From 29464c16d30ab18f9bfe18308eb0c423722d1e52 Mon Sep 17 00:00:00 2001 From: Dave Bunten Date: Thu, 24 Aug 2023 10:04:19 -0600 Subject: [PATCH] Update DuckDB to `^v0.8.0` (#92) * update duckdb * remove experimental setting which is now a default * update read csv to expect headers and comma delim duckdb 0.8.x is now more permissive of csv reads and now requires further specificity in order to emit exceptions with csv's that have values but include missing headers. --- cytotable/convert.py | 4 +- cytotable/utils.py | 7 --- poetry.lock | 103 +++++++++++++++++++++++-------------------- pyproject.toml | 2 +- 4 files changed, 57 insertions(+), 59 deletions(-) diff --git a/cytotable/convert.py b/cytotable/convert.py index 531940f0..1716ea2d 100644 --- a/cytotable/convert.py +++ b/cytotable/convert.py @@ -216,7 +216,7 @@ def _get_table_chunk_offsets( _duckdb_reader() .execute( # nosec - f"SELECT COUNT(*) from read_csv_auto('{source_path}')" + f"SELECT COUNT(*) from read_csv_auto('{source_path}', header=TRUE, delim=',')" if source_type == ".csv" else f"SELECT COUNT(*) from sqlite_scan('{source_path}', '{table_name}')" ) @@ -299,7 +299,7 @@ def _source_chunk_to_parquet( # build output query and filepath base # (chunked output will append offset to keep output paths unique) if str(AnyPath(source["source_path"]).suffix).lower() == ".csv": - base_query = f"SELECT {select_columns} FROM read_csv_auto('{str(source['source_path'])}')" + base_query = f"SELECT {select_columns} FROM read_csv_auto('{str(source['source_path'])}', header=TRUE, delim=',')" result_filepath_base = f"{source_dest_path}/{str(source['source_path'].stem)}" elif str(AnyPath(source["source_path"]).suffix).lower() == ".sqlite": diff --git a/cytotable/utils.py b/cytotable/utils.py index 56fe779c..35a62f56 100644 --- a/cytotable/utils.py +++ b/cytotable/utils.py @@ -192,13 +192,6 @@ def _duckdb_reader() -> duckdb.DuckDBPyConnection: https://duckdb.org/docs/sql/configuration#configuration-reference */ PRAGMA preserve_insertion_order=FALSE; - - /* - Allow parallel csv reads for performance increase possibilities - See the following for more information: - https://duckdb.org/docs/sql/configuration#configuration-reference - */ - PRAGMA experimental_parallel_csv=TRUE; """, ) diff --git a/poetry.lock b/poetry.lock index 3ff32a8c..181793fe 100644 --- a/poetry.lock +++ b/poetry.lock @@ -797,58 +797,63 @@ files = [ [[package]] name = "duckdb" -version = "0.7.1" +version = "0.8.1" description = "DuckDB embedded database" optional = false python-versions = "*" files = [ - {file = "duckdb-0.7.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:3e0170be6cc315c179169dfa3e06485ef7009ef8ce399cd2908f29105ef2c67b"}, - {file = "duckdb-0.7.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:6360d41023e726646507d5479ba60960989a09f04527b36abeef3643c61d8c48"}, - {file = "duckdb-0.7.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:578c269d7aa27184e8d45421694f89deda3f41fe6bd2a8ce48b262b9fc975326"}, - {file = "duckdb-0.7.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:36aae9a923c9f78da1cf3fcf75873f62d32ea017d4cef7c706d16d3eca527ca2"}, - {file = "duckdb-0.7.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:630e0122a02f19bb1fafae00786350b2c31ae8422fce97c827bd3686e7c386af"}, - {file = "duckdb-0.7.1-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:9b9ca2d294725e523ce207bc37f28787478ae6f7a223e2cf3a213a2d498596c3"}, - {file = "duckdb-0.7.1-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:0bd89f388205b6c99b62650169efe9a02933555ee1d46ddf79fbd0fb9e62652b"}, - {file = "duckdb-0.7.1-cp310-cp310-win32.whl", hash = "sha256:a9e987565a268fd8da9f65e54621d28f39c13105b8aee34c96643074babe6d9c"}, - {file = "duckdb-0.7.1-cp310-cp310-win_amd64.whl", hash = "sha256:5d986b5ad1307b069309f9707c0c5051323e29865aefa059eb6c3b22dc9751b6"}, - {file = "duckdb-0.7.1-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:54606dfd24d7181d3098030ca6858f6be52f3ccbf42fff05f7587f2d9cdf4343"}, - {file = "duckdb-0.7.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:bd9367ae650b6605ffe00412183cf0edb688a5fc9fbb03ed757e8310e7ec3b6c"}, - {file = "duckdb-0.7.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:aaf33aeb543c7816bd915cd10141866d54f92f698e1b5712de9d8b7076da19df"}, - {file = "duckdb-0.7.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2e56b0329c38c0356b40449917bab6fce6ac27d356257b9a9da613d2a0f064e0"}, - {file = "duckdb-0.7.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:604b8b476d6cc6bf91625d8c2722ef9c50c402b3d64bc518c838d6c279e6d93b"}, - {file = "duckdb-0.7.1-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:32a268508c6d7fdc99d5442736051de74c28a5166c4cc3dcbbf35d383299b941"}, - {file = "duckdb-0.7.1-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:90794406fa2111414877ee9db154fef940911f3920c312c1cf69947621737c8d"}, - {file = "duckdb-0.7.1-cp311-cp311-win32.whl", hash = "sha256:bf20c5ee62cbbf10b39ebdfd70d454ce914e70545c7cb6cb78cb5befef96328a"}, - {file = "duckdb-0.7.1-cp311-cp311-win_amd64.whl", hash = "sha256:bb2700785cab37cd1e7a76c4547a5ab0f8a7c28ad3f3e4d02a8fae52be223090"}, - {file = "duckdb-0.7.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:b09741cfa31388b8f9cdf5c5200e0995d55a5b54d2d1a75b54784e2f5c042f7f"}, - {file = "duckdb-0.7.1-cp36-cp36m-win32.whl", hash = "sha256:766e6390f7ace7f1e322085c2ca5d0ad94767bde78a38d168253d2b0b4d5cd5c"}, - {file = "duckdb-0.7.1-cp36-cp36m-win_amd64.whl", hash = "sha256:6a3f3315e2b553db3463f07324f62dfebaf3b97656a87558e59e2f1f816eaf15"}, - {file = "duckdb-0.7.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:278edb8c912d836b3b77fd1695887e1dbd736137c3912478af3608c9d7307bb0"}, - {file = "duckdb-0.7.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e189b558d10b58fe6ed85ce79f728e143eb4115db1e63147a44db613cd4dd0d9"}, - {file = "duckdb-0.7.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6b91ec3544ee4dc9e6abbdf2669475d5adedaaea51987c67acf161673e6b7443"}, - {file = "duckdb-0.7.1-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:3fe3f3dbd62b76a773144eef31aa29794578c359da932e77fef04516535318ca"}, - {file = "duckdb-0.7.1-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:1e78c7f59325e99f0b3d9fe7c2bad4aaadf42d2c7711925cc26331d7647a91b2"}, - {file = "duckdb-0.7.1-cp37-cp37m-win32.whl", hash = "sha256:bc2a12d9f4fc8ef2fd1022d610287c9fc9972ea06b7510fc87387f1fa256a390"}, - {file = "duckdb-0.7.1-cp37-cp37m-win_amd64.whl", hash = "sha256:53e3db1bc0f445ee48b23cde47bfba08c7fa5a69976c740ec8cdf89543d2405d"}, - {file = "duckdb-0.7.1-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:1247cc11bac17f2585d11681329806c86295e32242f84a10a604665e697d5c81"}, - {file = "duckdb-0.7.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:5feaff16a012075b49dfa09d4cb24455938d6b0e06b08e1404ec00089119dba2"}, - {file = "duckdb-0.7.1-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:b411a0c361eab9b26dcd0d0c7a0d1bc0ad6b214068555de7e946fbdd2619961a"}, - {file = "duckdb-0.7.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:c7c76d8694ecdb579241ecfeaf03c51d640b984dbbe8e1d9f919089ebf3cdea6"}, - {file = "duckdb-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:193b896eed44d8751a755ccf002a137630020af0bc3505affa21bf19fdc90df3"}, - {file = "duckdb-0.7.1-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:7da132ee452c80a3784b8daffd86429fa698e1b0e3ecb84660db96d36c27ad55"}, - {file = "duckdb-0.7.1-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:5fd08c97c3e8cb5bec3822cf78b966b489213dcaab24b25c05a99f7caf8db467"}, - {file = "duckdb-0.7.1-cp38-cp38-win32.whl", hash = "sha256:9cb956f94fa55c4782352dac7cc7572a58312bd7ce97332bb14591d6059f0ea4"}, - {file = "duckdb-0.7.1-cp38-cp38-win_amd64.whl", hash = "sha256:289a5f65213e66d320ebcd51a94787e7097b9d1c3492d01a121a2c809812bf19"}, - {file = "duckdb-0.7.1-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:8085ad58c9b5854ee3820804fa1797e6b3134429c1506c3faab3cb96e71b07e9"}, - {file = "duckdb-0.7.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:b47c19d1f2f662a5951fc6c5f6939d0d3b96689604b529cdcffd9afdcc95bff2"}, - {file = "duckdb-0.7.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:6a611f598226fd634b7190f509cc6dd668132ffe436b0a6b43847b4b32b99e4a"}, - {file = "duckdb-0.7.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:6730f03b5b78f3943b752c90bdf37b62ae3ac52302282a942cc675825b4a8dc9"}, - {file = "duckdb-0.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fe23e938d29cd8ea6953d77dc828b7f5b95a4dbc7cd7fe5bcc3531da8cec3dba"}, - {file = "duckdb-0.7.1-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:feffe503c2e2a99480e1e5e15176f37796b3675e4dadad446fe7c2cc672aed3c"}, - {file = "duckdb-0.7.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:72fceb06f5bf24ad6bb5974c60d397a7a7e61b3d847507a22276de076f3392e2"}, - {file = "duckdb-0.7.1-cp39-cp39-win32.whl", hash = "sha256:c4d5217437d20d05fe23317bbc161befa1f9363f3622887cd1d2f4719b407936"}, - {file = "duckdb-0.7.1-cp39-cp39-win_amd64.whl", hash = "sha256:066885e1883464ce3b7d1fd844f9431227dcffe1ee39bfd2a05cd6d53f304557"}, - {file = "duckdb-0.7.1.tar.gz", hash = "sha256:a7db6da0366b239ea1e4541fcc19556b286872f5015c9a54c2e347146e25a2ad"}, + {file = "duckdb-0.8.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:14781d21580ee72aba1f5dcae7734674c9b6c078dd60470a08b2b420d15b996d"}, + {file = "duckdb-0.8.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f13bf7ab0e56ddd2014ef762ae4ee5ea4df5a69545ce1191b8d7df8118ba3167"}, + {file = "duckdb-0.8.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e4032042d8363e55365bbca3faafc6dc336ed2aad088f10ae1a534ebc5bcc181"}, + {file = "duckdb-0.8.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:31a71bd8f0b0ca77c27fa89b99349ef22599ffefe1e7684ae2e1aa2904a08684"}, + {file = "duckdb-0.8.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:24568d6e48f3dbbf4a933109e323507a46b9399ed24c5d4388c4987ddc694fd0"}, + {file = "duckdb-0.8.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:297226c0dadaa07f7c5ae7cbdb9adba9567db7b16693dbd1b406b739ce0d7924"}, + {file = "duckdb-0.8.1-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:5792cf777ece2c0591194006b4d3e531f720186102492872cb32ddb9363919cf"}, + {file = "duckdb-0.8.1-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:12803f9f41582b68921d6b21f95ba7a51e1d8f36832b7d8006186f58c3d1b344"}, + {file = "duckdb-0.8.1-cp310-cp310-win32.whl", hash = "sha256:d0953d5a2355ddc49095e7aef1392b7f59c5be5cec8cdc98b9d9dc1f01e7ce2b"}, + {file = "duckdb-0.8.1-cp310-cp310-win_amd64.whl", hash = "sha256:6e6583c98a7d6637e83bcadfbd86e1f183917ea539f23b6b41178f32f813a5eb"}, + {file = "duckdb-0.8.1-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:fad7ed0d4415f633d955ac24717fa13a500012b600751d4edb050b75fb940c25"}, + {file = "duckdb-0.8.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:81ae602f34d38d9c48dd60f94b89f28df3ef346830978441b83c5b4eae131d08"}, + {file = "duckdb-0.8.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:7d75cfe563aaa058d3b4ccaaa371c6271e00e3070df5de72361fd161b2fe6780"}, + {file = "duckdb-0.8.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8dbb55e7a3336f2462e5e916fc128c47fe1c03b6208d6bd413ac11ed95132aa0"}, + {file = "duckdb-0.8.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:a6df53efd63b6fdf04657385a791a4e3c4fb94bfd5db181c4843e2c46b04fef5"}, + {file = "duckdb-0.8.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1b188b80b70d1159b17c9baaf541c1799c1ce8b2af4add179a9eed8e2616be96"}, + {file = "duckdb-0.8.1-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:5ad481ee353f31250b45d64b4a104e53b21415577943aa8f84d0af266dc9af85"}, + {file = "duckdb-0.8.1-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:d1d1b1729993611b1892509d21c21628917625cdbe824a61ce891baadf684b32"}, + {file = "duckdb-0.8.1-cp311-cp311-win32.whl", hash = "sha256:2d8f9cc301e8455a4f89aa1088b8a2d628f0c1f158d4cf9bc78971ed88d82eea"}, + {file = "duckdb-0.8.1-cp311-cp311-win_amd64.whl", hash = "sha256:07457a43605223f62d93d2a5a66b3f97731f79bbbe81fdd5b79954306122f612"}, + {file = "duckdb-0.8.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:d2c8062c3e978dbcd80d712ca3e307de8a06bd4f343aa457d7dd7294692a3842"}, + {file = "duckdb-0.8.1-cp36-cp36m-win32.whl", hash = "sha256:fad486c65ae944eae2de0d590a0a4fb91a9893df98411d66cab03359f9cba39b"}, + {file = "duckdb-0.8.1-cp36-cp36m-win_amd64.whl", hash = "sha256:86fa4506622c52d2df93089c8e7075f1c4d0ba56f4bf27faebde8725355edf32"}, + {file = "duckdb-0.8.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:60e07a62782f88420046e30cc0e3de842d0901c4fd5b8e4d28b73826ec0c3f5e"}, + {file = "duckdb-0.8.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f18563675977f8cbf03748efee0165b4c8ef64e0cbe48366f78e2914d82138bb"}, + {file = "duckdb-0.8.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:16e179443832bea8439ae4dff93cf1e42c545144ead7a4ef5f473e373eea925a"}, + {file = "duckdb-0.8.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a413d5267cb41a1afe69d30dd6d4842c588256a6fed7554c7e07dad251ede095"}, + {file = "duckdb-0.8.1-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:3784680df59eadd683b0a4c2375d451a64470ca54bd171c01e36951962b1d332"}, + {file = "duckdb-0.8.1-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:67a1725c2b01f9b53571ecf3f92959b652f60156c1c48fb35798302e39b3c1a2"}, + {file = "duckdb-0.8.1-cp37-cp37m-win32.whl", hash = "sha256:197d37e2588c5ad063e79819054eedb7550d43bf1a557d03ba8f8f67f71acc42"}, + {file = "duckdb-0.8.1-cp37-cp37m-win_amd64.whl", hash = "sha256:3843feb79edf100800f5037c32d5d5a5474fb94b32ace66c707b96605e7c16b2"}, + {file = "duckdb-0.8.1-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:624c889b0f2d656794757b3cc4fc58030d5e285f5ad2ef9fba1ea34a01dab7fb"}, + {file = "duckdb-0.8.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:fcbe3742d77eb5add2d617d487266d825e663270ef90253366137a47eaab9448"}, + {file = "duckdb-0.8.1-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:47516c9299d09e9dbba097b9fb339b389313c4941da5c54109df01df0f05e78c"}, + {file = "duckdb-0.8.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:cf1ba718b7522d34399446ebd5d4b9fcac0b56b6ac07bfebf618fd190ec37c1d"}, + {file = "duckdb-0.8.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e36e35d38a9ae798fe8cf6a839e81494d5b634af89f4ec9483f4d0a313fc6bdb"}, + {file = "duckdb-0.8.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:23493313f88ce6e708a512daacad13e83e6d1ea0be204b175df1348f7fc78671"}, + {file = "duckdb-0.8.1-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:1fb9bf0b6f63616c8a4b9a6a32789045e98c108df100e6bac783dc1e36073737"}, + {file = "duckdb-0.8.1-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:12fc13ecd5eddd28b203b9e3999040d3a7374a8f4b833b04bd26b8c5685c2635"}, + {file = "duckdb-0.8.1-cp38-cp38-win32.whl", hash = "sha256:a12bf4b18306c9cb2c9ba50520317e6cf2de861f121d6f0678505fa83468c627"}, + {file = "duckdb-0.8.1-cp38-cp38-win_amd64.whl", hash = "sha256:e4e809358b9559c00caac4233e0e2014f3f55cd753a31c4bcbbd1b55ad0d35e4"}, + {file = "duckdb-0.8.1-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:7acedfc00d97fbdb8c3d120418c41ef3cb86ef59367f3a9a30dff24470d38680"}, + {file = "duckdb-0.8.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:99bfe264059cdc1e318769103f656f98e819cd4e231cd76c1d1a0327f3e5cef8"}, + {file = "duckdb-0.8.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:538b225f361066231bc6cd66c04a5561de3eea56115a5dd773e99e5d47eb1b89"}, + {file = "duckdb-0.8.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ae0be3f71a18cd8492d05d0fc1bc67d01d5a9457b04822d025b0fc8ee6efe32e"}, + {file = "duckdb-0.8.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:cd82ba63b58672e46c8ec60bc9946aa4dd7b77f21c1ba09633d8847ad9eb0d7b"}, + {file = "duckdb-0.8.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:780a34559aaec8354e83aa4b7b31b3555f1b2cf75728bf5ce11b89a950f5cdd9"}, + {file = "duckdb-0.8.1-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:01f0d4e9f7103523672bda8d3f77f440b3e0155dd3b2f24997bc0c77f8deb460"}, + {file = "duckdb-0.8.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:31f692decb98c2d57891da27180201d9e93bb470a3051fcf413e8da65bca37a5"}, + {file = "duckdb-0.8.1-cp39-cp39-win32.whl", hash = "sha256:e7fe93449cd309bbc67d1bf6f6392a6118e94a9a4479ab8a80518742e855370a"}, + {file = "duckdb-0.8.1-cp39-cp39-win_amd64.whl", hash = "sha256:81d670bc6807672f038332d9bf587037aabdd741b0810de191984325ed307abd"}, + {file = "duckdb-0.8.1.tar.gz", hash = "sha256:a54d37f4abc2afc4f92314aaa56ecf215a411f40af4bffe1e86bd25e62aceee9"}, ] [[package]] @@ -3586,4 +3591,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.13" -content-hash = "6a2f9d7eb0153d5ca0607beedf5aa109b12b47a9070cbb958fd30145d91d959b" +content-hash = "8b1d0c799b4a49350c627b6b8607ebdc9d63202079264512cd0c30b2c64256fd" diff --git a/pyproject.toml b/pyproject.toml index 41854931..8042069b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,7 +10,7 @@ packages = [{include = "cytotable"}] python = ">=3.8,<3.13" pyarrow = "^12.0.0" cloudpathlib = {extras = ["all"], version = "^0.13.0"} -duckdb = "^0.7.0" +duckdb = "^0.8.0" parsl = "^2023.4.24" [tool.poetry.dev-dependencies]