From bbbd858cc8492ae89b0fc29ffb89f3e838308e84 Mon Sep 17 00:00:00 2001 From: cyouh95 Date: Mon, 1 Jul 2024 17:43:18 -0700 Subject: [PATCH] NF_MAAffymetrix: #99 account for quoted commas --- .../NF_MAAffymetrix/workflow_code/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf b/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf index 1cf866bd..caa9c9e7 100644 --- a/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf +++ b/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf @@ -111,7 +111,7 @@ workflow { GENERATE_SOFTWARE_TABLE( ch_software_versions | unique | collectFile(newLine: true, sort: true, cache: false), - ch_runsheet | splitCsv(header: true) | first | map{ row -> row['Array Data File Name'] } + ch_runsheet | splitCsv(header: true, quote: '"') | first | map{ row -> row['Array Data File Name'] } ) // export meta for post processing usage