diff --git a/cyclus_gui/gui/backend_window.py b/cyclus_gui/gui/backend_window.py index fe2715e..57f72d6 100644 --- a/cyclus_gui/gui/backend_window.py +++ b/cyclus_gui/gui/backend_window.py @@ -2,7 +2,6 @@ from tkinter import messagebox from tkinter import filedialog from tkinter.scrolledtext import ScrolledText -import xmltodict import uuid import os import shutil @@ -19,7 +18,7 @@ class BackendWindow(Frame): - def __init__(self, master, output_path): + def __init__(self, master, output_path, filename='cyclus.sqlite'): """ does backend analysis """ @@ -31,7 +30,7 @@ def __init__(self, master, output_path): self.output_path = output_path self.master.geometry('+0+%s' %int(self.screen_height/4)) self.configure_window() - self.get_cursor() + self.get_cursor(filename) self.get_id_proto_dict() self.get_start_times() @@ -129,8 +128,8 @@ def get_id_proto_dict(self): self.id_proto_dict[agent['agentid']] = agent['prototype'] - def get_cursor(self): - con = lite.connect(os.path.join(self.output_path, 'cyclus.sqlite')) + def get_cursor(self, filename='cyclus.sqlite'): + con = lite.connect(os.path.join(self.output_path, filename)) con.row_factory = lite.Row self.cur = con.cursor() diff --git a/neams/cyclus/cyclus.sqlite b/neams/cyclus/cyclus.sqlite new file mode 100644 index 0000000..78547cb Binary files /dev/null and b/neams/cyclus/cyclus.sqlite differ diff --git a/neams/cyclus/cyclus.wbp b/neams/cyclus/cyclus.wbp index cf56b40..1bb8cdd 100644 --- a/neams/cyclus/cyclus.wbp +++ b/neams/cyclus/cyclus.wbp @@ -1,62 +1,66 @@ % how it's set up: -% the postrun generates 5 different csv files with a specific keyword in it +% the postrun generates a csv file with a specific keyword in it +% with BEGIN and END lines % that allows the postprocessor to recognize / parse the appropriate values % material flow agent to agent extensions = [csv] -filter_pattern = "material_flow_agent_to_agent" -processor("Material flow agent to agent:") { - delimiter = ";" +filter_pattern = "CYCLUS" - logic = """${PYTHON} ${RT}/../cyclus/cyclus_processor.py ${CURRENT_FILE}""" +processor("Material flow agent to agent") { + delimiter = "," + + logic = """${AWK} "/BEGIN trade_flow_agent/,/END trade_flow_agent/" ${CURRENT_FILE}""" graph("Material flow agent to agent"){ % key axis (x-axis) label - key_axis_label = "${a4}" + key_axis_label = "Timesteps" % value axis (y-axis) label - value_axis_label = "${b4}" + value_axis_label = "Mass [kg]" % key axis scale (linear, log) - key_axis_scale = log + key_axis_scale = linear % line style (line, stepleft, stepright, stepcenter, impulse, none) - line_style = "${c2}" + line_style = "line" % series keys (x-values) - keys = "a5:a?" % energy + keys = "a2:?2" % timesteps % series values (y-values) - values = "b5:b?" + values = "f4:?4" - % series value uncertainties (+/- unc) - values_uncertainty = "c5:c?" } } -% material flow proto to proto -extensions = [csv] -filter_pattern = "material_flow_proto_to_proto" - - +processor("Agent flow deployed") { + delimiter = "," -% commodity flow -extensions = [csv] -filter_pattern = "commodity_flow" + logic = """${AWK} "/BEGIN agent_flow_deployed/,/END agent_flow_deployed/" ${CURRENT_FILE}""" + graph("Material flow agent to agent"){ + % key axis (x-axis) label + key_axis_label = "Timesteps" + % value axis (y-axis) label + value_axis_label = "Deployed" -% timeseries -extensions = [csv] -filter_pattern = "timeseries" + % key axis scale (linear, log) + key_axis_scale = linear + % line style (line, stepleft, stepright, stepcenter, impulse, none) + line_style = "line" + % series keys (x-values) + keys = "a2:?2" % timesteps -% inventory -extensions = [csv] -filter_pattern = "inventory" + % series values (y-values) + values = "b4:?4" + } +} diff --git a/neams/cyclus/cyclus_postproc.py b/neams/cyclus/cyclus_postproc.py deleted file mode 100644 index b35f1e2..0000000 --- a/neams/cyclus/cyclus_postproc.py +++ /dev/null @@ -1,209 +0,0 @@ -import numpy as np -from __future__ import print_function, division -import sys, os -from argparse import ArgumentParser, FileType, Namespace, SUPPRESS -import sqlite3 as lite - -class CyclusProcessor(Processor): - def __init__(self, name='cyclus', options=None): - super(CyclusProcessor, self).__init__(name, options) - self.filepath = 'path/to/some/file' - self.el_z_dict = {'H': 1, 'He': 2, 'Li': 3, 'Be': 4, 'B': 5, 'C': 6, 'N': 7, 'O': 8, 'F': 9, 'Ne': 10, 'Na': 11, 'Mg': 12, 'Al': 13, 'Si': 14, 'P': 15, 'S': 16, 'Cl': 17, 'Ar': 18, 'K': 19, 'Ca': 20, 'Sc': 21, 'Ti': 22, 'V': 23, 'Cr': 24, 'Mn': 25, 'Fe': 26, 'Co': 27, 'Ni': 28, 'Cu': 29, 'Zn': 30, 'Ga': 31, 'Ge': 32, 'As': 33, 'Se': 34, 'Br': 35, 'Kr': 36, 'Rb': 37, 'Sr': 38, 'Y': 39, 'Zr': 40, 'Nb': 41, 'Mo': 42, 'Tc': 43, 'Ru': 44, 'Rh': 45, 'Pd': 46, 'Ag': 47, 'Cd': 48, 'In': 49, 'Sn': 50, 'Sb': 51, 'Te': 52, 'I': 53, 'Xe': 54, 'Cs': 55, 'Ba': 56, 'La': 57, 'Ce': 58, 'Pr': 59, 'Nd': 60, 'Pm': 61, 'Sm': 62, 'Eu': 63, 'Gd': 64, 'Tb': 65, 'Dy': 66, 'Ho': 67, 'Er': 68, 'Tm': 69, 'Yb': 70, 'Lu': 71, 'Hf': 72, 'Ta': 73, 'W': 74, 'Re': 75, 'Os': 76, 'Ir': 77, 'Pt': 78, 'Au': 79, 'Hg': 80, 'Tl': 81, 'Pb': 82, 'Bi': 83, 'Po': 84, 'At': 85, 'Rn': 86, 'Fr': 87, 'Ra': 88, 'Ac': 89, 'Th': 90, 'Pa': 91, 'U': 92, 'Np': 93, 'Pu': 94, 'Am': 95, 'Cm': 96, 'Bk': 97, 'Cf': 98, 'Es': 99, 'Fm': 100, 'Md': 101, 'No': 102, 'Lr': 103} - self.z_el_dict = {v:k for k, v in self.el_z_dict.items()} - con = lite.connect(self.filepath) - con.row_factory = lite.Row - self.cur = con.cursor() - self.get_id_proto_dict() - self.get_start_times() - - - - - ############################################################################################################################## - ## initializing functions - def get_id_proto_dict(self): - agentids = self.cur.execute('SELECT agentid, prototype, kind FROM agententry').fetchall() - self.id_proto_dict = {} - for agent in agentids: - if agent['kind'] == 'Facility': - self.id_proto_dict[agent['agentid']] = agent['prototype'] - - def get_start_times(self): - i = self.cur.execute('SELECT * FROM info').fetchone() - self.init_year = i['InitialYear'] - self.init_month = i['InitialMonth'] - self.duration = i['Duration'] - i = self.cur.execute('SELECT * FROM TimeStepDur').fetchone() - self.dt = i['DurationSecs'] - - - ############################################################################################################################## - - ############################################################################################################################## - ## label generation functions - def generate_material_flow_labels(self, groupby): - trades = self.cur.execute('SELECT DISTINCT senderid, receiverid, commodity FROM transactions').fetchall() - if groupby == 'agent': - table_dict = {'sender': [], - 'receiver': [], - 'commodity': []} - for i in traders: - table_dict['sender'].append(self.id_proto_dict[i['senderid']] + '(%s)' %str(i['senderid'])) - table_dict['receiver'].append(self.id_proto_dict[i['receiverid']] + '(%s)' %str(i['receiverid'])) - table_dict['commodity'].append(i['commodity']) - - elif groupby == 'prototype': - already = [] - table_dict = {'sender': [], 'receiver': [], 'commodity': []} - for i in traders: - checker = [self.id_proto_dict[i['senderid']], self.id_proto_dict[i['receiverid']], i['commodity']] - if checker in already: - continue - else: - already.append(checker) - table_dict['sender'].append(checker[0]) - table_dict['receiver'].append(checker[1]) - table_dict['commodity'].append(checker[2]) - - #! generate processing son - #! export_sender_receiver - - - def generate_commodity_transfer_labels(self): - commods = self.cur.execute('SELECT DISTINCT commodity FROM transactions').fetchall() - names = [i['commodity'] for i in commods] - names.sort(key=str.lower) - #! generate processing son - #export_commodity_transfer - - - def generate_agent_deployment_labels(self): - entry = self.cur.execute('SELECT DISTINCT prototype FROM agententry WHERE kind="Facility"').fetchall() - proto_list = [i['prototype'] for i in entry] - proto_list.sort(key=str.lower) - #! generate processing son - # export_agent_deployment - - def generate_timeseries_labels(self): - tables = self.cur.execute('SELECT name FROM sqlite_master WHERE type="table"').fetchall() - timeseries_table_list = [i['name'].replace('TimeSeries', '') for i in tables if 'TimeSeries' in i] - timeseries_table_list.sort() - #! generate processing son - # export_timeseries - - - ############################################################################################################################## - - - ############################################################################################################################## - ## export functions - def export_sender_receiver(self, sender, receiver, commodity, groupby): - #! get n_isos from a configuration thing? - if groupby == 'prototype': - receiver_id = [k for k,v in self.id_proto_dict.items() if v == receiver] - sender_id = [k for k,v in self.id_proto_dict.items() if v == sender] - else: - sender_name = sender[:sender.index('(')] - receiver_name = receiver[:receiver.index('(')] - sender_id = [sender[sender.index('(')+1:sender.index(')')]] - receiver_id = [receiver[receiver.index('(')+1:receiver.index(')')]] - - #!#!#!#! - str_sender_id = [str(q) for q in sender_id] - str_receiver_id = [str(q) for q in receiver_id] - if n_isos == 0: - query = 'SELECT sum(quantity), time FROM transactions INNER JOIN resources ON transactions.resourceid == resources.resourceid WHERE (senderid = ' + ' OR senderid = '.join(str_sender_id) + ') AND (receiverid = ' + ' OR receiverid = '.join(str_receiver_id) + ') GROUP BY time' - q = self.cur.execute(query).fetchall() - x, y = self.query_result_to_timeseries(q, 'sum(quantity)') - else: - # query = 'SELECT sum(quantity)*massfrac, nucid, time FROM transactions INNER JOIN resources ON transactions.resourceid == resources.resourceid LEFT OUTER JOIN compositions ON compositions.qualid = resources.qualid WHERE (senderid = ' + ' OR senderid = '.join(str_sender_id) + ') AND (receiverid = ' + ' OR receiverid = '.join(str_receiver_id) + ') GROUP BY time, nucid' - # q = self.cur.execute(query).fetchall() - # x, y = self.query_result_to_dict(q, 'nucid', 'sum(quantity)*massfrac') - x, y = self.get_iso_flow_dict('(senderid = ' + ' OR senderid = '.join(str_sender_id) + ') AND (receiverid = ' + ' OR receiverid = '.join(str_receiver_id) + ')', n_isos) - - self.export_to_csv(x, y, - '%s sent' %commodity, '%s->[%s]->%s' %(sender, receiver, commodity)) - - - def export_commodity_transfer(self, commod): - movement = self.cur.execute('SELECT time, sum(quantity) FROM transactions INNER JOIN resources ON transactions.resourceid==resources.resourceid WHERE commodity="%s" GROUP BY time' %commod).fetchall() - x, y = self.query_result_to_timeseries(movement, 'sum(quantity)') - - self.export_to_csv(x, y, - '$s sent', commod) - - def export_agent_deployment(self, prototype, which): - entry = self.cur.execute('SELECT agentid, entertime FROM agententry WHERE prototype="%s"' %prototype).fetchall() - agent_id_list = [i['agentid'] for i in entry] - entertime = [i['entertime'] for i in entry] - exittime = [] - for i in agent_id_list: - try: - exit = self.cur.execute('SELECT agentid, exittime FROM agentexit WHERE agentid=%s' %str(i)).fetchone() - except: - # agentexit table doesn't exist - continue - if exit == None: - exittime.append(-1) - else: - exittime.append(exit['exittime']) - x = np.array(list(range(self.duration))) - y = [] - if which == 'enter': - for time in x: - y.append(entertime.count(time)) - elif which == 'exit': - for time in x: - y.append(exittime.count(time)) - elif which == 'deployed': - deployed = 0 - for time in x: - deployed += entertime.count(time) - deployed -= exittime.count(time) - y.append(deployed) - - self.export_to_csv(x, y, - 'Number of %s (%s)' %(prototype, which), '%s_%s' %(prototype, which)) - - - def export_timeseries(self, timeseries): - - - - - ############################################################################################################################## - - - ############################################################################################################################## - ## helper functions - def query_result_to_timeseries(self, query_result, col_name, - time_col_name='time'): - x = np.arange(self.duration) - y = np.zeros(self.duration) - for i in query_result: - y[int(i[time_col_name])] += i[col_name] - return x, y - - - def export_to_csv(x, y, ylabel, title, xlabel='Date'): - #if self.config_dict['cumulative'].get() == 'True': - # if type(y) is dict: - # new_y = {k: np.cumsum(v) for k, v in y.items()} - # y = new_y - # else: - # y = np.cumsum(y) - #! Where to export this to? - if type(y) is dict: - columns = [str(q) for q in list(y.keys())] - s = 'time, %s\n' %', '.join(columns) - for indx, val in enumerate(x): - s += '%s, %s\n' %(str(x[indx]), ', '.join([str(q[indx]) for q in list(y.values())])) - else: - s = 'time, quantity\n' - for indx, val in enumerate(x): - s += '%s, %s\n' %(str(x[indx]), str(y[indx])) - with open(filename, 'w') as f: - f.write(s) - - ############################################################################################################################## - diff --git a/neams/cyclus/cyclus_processor.py b/neams/cyclus/cyclus_processor.py index 3f22f1c..154a57e 100644 --- a/neams/cyclus/cyclus_processor.py +++ b/neams/cyclus/cyclus_processor.py @@ -3,22 +3,36 @@ import shutil import json import copy +import matplotlib.pyplot as plt import sqlite3 as lite +from argparse import ArgumentParser, FileType, Namespace, SUPPRESS import sys -sys.path.append('/Users/4ib/Downloads/Workbench-Darwin/rte/util/') +here = os.path.abspath(os.path.dirname(__file__)) +sys.path.append(os.path.join(here, os.pardir, 'util')) from processor import load_environment, BinnedData, Sheet, Options, Processor -class CyclusProcessor(Processor): - def __init__(self, sqlite_path, name='cyclus', options=None): - super(CyclusProcessor, self).__init__(name, options) +from cyclus_gui.gui.backend_window import BackendWindow +from tkinter import * + + + +class CyclusPostrunner: + def __init__(self, sqlite_path): #! self.get_cursor(sqlite_path) self.get_times() self.get_id_proto_dict() self.el_z_dict = {'H': 1, 'He': 2, 'Li': 3, 'Be': 4, 'B': 5, 'C': 6, 'N': 7, 'O': 8, 'F': 9, 'Ne': 10, 'Na': 11, 'Mg': 12, 'Al': 13, 'Si': 14, 'P': 15, 'S': 16, 'Cl': 17, 'Ar': 18, 'K': 19, 'Ca': 20, 'Sc': 21, 'Ti': 22, 'V': 23, 'Cr': 24, 'Mn': 25, 'Fe': 26, 'Co': 27, 'Ni': 28, 'Cu': 29, 'Zn': 30, 'Ga': 31, 'Ge': 32, 'As': 33, 'Se': 34, 'Br': 35, 'Kr': 36, 'Rb': 37, 'Sr': 38, 'Y': 39, 'Zr': 40, 'Nb': 41, 'Mo': 42, 'Tc': 43, 'Ru': 44, 'Rh': 45, 'Pd': 46, 'Ag': 47, 'Cd': 48, 'In': 49, 'Sn': 50, 'Sb': 51, 'Te': 52, 'I': 53, 'Xe': 54, 'Cs': 55, 'Ba': 56, 'La': 57, 'Ce': 58, 'Pr': 59, 'Nd': 60, 'Pm': 61, 'Sm': 62, 'Eu': 63, 'Gd': 64, 'Tb': 65, 'Dy': 66, 'Ho': 67, 'Er': 68, 'Tm': 69, 'Yb': 70, 'Lu': 71, 'Hf': 72, 'Ta': 73, 'W': 74, 'Re': 75, 'Os': 76, 'Ir': 77, 'Pt': 78, 'Au': 79, 'Hg': 80, 'Tl': 81, 'Pb': 82, 'Bi': 83, 'Po': 84, 'At': 85, 'Rn': 86, 'Fr': 87, 'Ra': 88, 'Ac': 89, 'Th': 90, 'Pa': 91, 'U': 92, 'Np': 93, 'Pu': 94, 'Am': 95, 'Cm': 96, 'Bk': 97, 'Cf': 98, 'Es': 99, 'Fm': 100, 'Md': 101, 'No': 102, 'Lr': 103} self.z_el_dict = {v:k for k, v in self.el_z_dict.items()} + self.csv_string = 'CYCLUS\n' + self.generate_trade_flow('prototype') + self.generate_trade_flow('agent') + self.generate_commodity_flow() + self.generate_agent_flow() + with open(sqlite_path.replace('.sqlite', '.csv'), 'w') as f: + f.write(self.csv_string) ########################### # Auxiliary functions @@ -131,7 +145,7 @@ def generate_trade_flow(self, groupby): # first row: keyword # second row: x values (space separated) # sender, receiver, commodity, y (space separated) - csv_string = 'trade_flow_%s' %groupby + '\n' + self.csv_string += 'BEGIN trade_flow_%s' %groupby + '\n' if groupby == 'prototype': header = ['sender', 'receiver', 'commodity', 'y'] else: #groupby == 'prototype' @@ -143,27 +157,26 @@ def generate_trade_flow(self, groupby): if (prev_x != x).all(): raise ValueError('The x values are not the same!') else: - csv_string += ' '.join([str(q) for q in x]) + '\n' - csv_string += ','.join(header) + '\n' + self.csv_string += ','.join([str(q) for q in x]) + '\n' + self.csv_string += ','.join(header) + '\n' if groupby == 'prototype': - csv_string += ','.join([s, r, c]) + ',' + ' '.join([str(q) for q in y]) + '\n' + self.csv_string += ','.join([s, r, c]) + ',' + ','.join([str(q) for q in y]) + '\n' else: #groupby == 'agent' sender_name = s[:s.index('(')] receiver_name = r[:r.index('(')] sender_id = s[s.index('(')+1:s.index(')')] receiver_id = r[r.index('(')+1:r.index(')')] - csv_string += ','.join([sender_name, sender_id, receiver_name, receiver_id, c]) + ',' + ' '.join([str(q) for q in y]) + '\n' + self.csv_string += ','.join([sender_name, sender_id, receiver_name, receiver_id, c]) + ',' + ','.join([str(q) for q in y]) + '\n' prev_x = x - with open('trade_flow_%s.csv' %groupby, 'w') as f: - f.write(csv_string[:-1]) + self.csv_string += 'END trade_flow_%s\n' %groupby def generate_commodity_flow(self): commods = self.cur.execute('SELECT DISTINCT commodity FROM transactions').fetchall() - csv_string = 'commodity_flow\n' + self.csv_string += 'BEGIN commodity_flow\n' header = ['commodity', 'y'] for indx, i in enumerate(commods): commod = i['commodity'] @@ -172,20 +185,19 @@ def generate_commodity_flow(self): if (prev_x != x).all(): raise ValueError('The x values are not the same') else: - csv_string += ' '.join([str(q) for q in x]) + '\n' - csv_string += ','.join(header) + '\n' + self.csv_string += ','.join([str(q) for q in x]) + '\n' + self.csv_string += ','.join(header) + '\n' - csv_string += commod + ',' + ' '.join([str(q) for q in y])+'\n' + self.csv_string += commod + ',' + ','.join([str(q) for q in y])+'\n' prev_x = x - with open('commodity_flow.csv', 'w') as f: - f.write(csv_string[:-1]) + self.csv_string += 'END commodity_flow\n' def generate_agent_flow(self): entry = self.cur.execute('SELECT DISTINCT prototype FROM agententry WHERE kind="Facility"').fetchall() for which in ['entered', 'exited', 'deployed']: - csv_string = 'agent_flow_%s\n' %which + self.csv_string += 'BEGIN agent_flow_%s\n' %which header = ['prototype', 'y'] for indx, i in enumerate(entry): proto = i['prototype'] @@ -194,13 +206,13 @@ def generate_agent_flow(self): if (prev_x != x).all(): raise ValueError('The x values are not the same') else: - csv_string += ' '.join([str(q) for q in x]) + '\n' - csv_string += ','.join(header) + '\n' + self.csv_string += ','.join([str(q) for q in x]) + '\n' + self.csv_string += ','.join(header) + '\n' - csv_string += proto + ',' + ' '.join([str(q) for q in y]) + '\n' + self.csv_string += proto + ',' + ','.join([str(q) for q in y]) + '\n' prev_x = x - with open('agent_flow_%s.csv' %which, 'w') as f: - f.write(csv_string[:-1]) + + self.csv_string += 'END agent_flow_%s\n' %which @@ -314,6 +326,53 @@ def get_inventory_flow(self): z=0 +def read_csv(file, data_type): + filestr = file.read() + # lol research + alpha = filestr.find('BEGIN %s'%data_type) + len('BEGIN %s'%data_type) + omega = filestr.find('END %s' %data_type) + result = filestr[alpha+1:omega-1] + lines = result.split('\n') + lines = [q.split(',') for q in lines] + x = [float(q) for q in lines[0]] + + # where's y? + y_indx = lines[1].index('y') + print(y_indx) + + labels = ['_'.join(q[:y_indx]) for q in lines[2:]] + ys = [np.array(q[y_indx:], dtype=float) for q in lines[2:]] + + for indx, val in enumerate(ys): + plt.plot(x, ys[indx], label=labels[indx]) + + plt.title(data_type.replace('_', ' ').capitalize()) + plt.legend() + plt.show() + + + +def main(): + parser = ArgumentParser(description='', epilog='Jin Whan Bae') + #parser.add_argument('file', type=FileType('r'), + # help='Cyclus output csv file path') + parser.add_argument('file', type=str) + parser.add_argument('-data_type', type=str, default=None, + dest='data_type', + help='Type of data to be printed [trade_flow_agent/trade_flow_prototype/commodity_flow/agent_flow_entered/agent_flow_exited/agent_flow_deployed]' + ) + args = parser.parse_args() + if '.csv' in args.file: + sqlite = args.file.replace('.csv', '.sqlite') + args.file = os.path.dirname(args.file) + root = Tk() + app = BackendWindow(root, args.file, sqlite) + root.mainloop() + + + #read_csv(args.file, args.data_type) + # cyclus_processor = CyclusProcessor('cyclus', args) + - - +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/neams/cyclus/exported_csv/enrichment_reactor_uox_.csv b/neams/cyclus/exported_csv/enrichment_reactor_uox_.csv new file mode 100644 index 0000000..1c390a1 --- /dev/null +++ b/neams/cyclus/exported_csv/enrichment_reactor_uox_.csv @@ -0,0 +1,601 @@ +time, quantity +0, 90000.0 +1, 0.0 +2, 0.0 +3, 0.0 +4, 0.0 +5, 0.0 +6, 0.0 +7, 0.0 +8, 0.0 +9, 0.0 +10, 0.0 +11, 0.0 +12, 0.0 +13, 0.0 +14, 0.0 +15, 0.0 +16, 0.0 +17, 30000.0 +18, 0.0 +19, 0.0 +20, 0.0 +21, 0.0 +22, 0.0 +23, 0.0 +24, 0.0 +25, 0.0 +26, 0.0 +27, 0.0 +28, 0.0 +29, 0.0 +30, 0.0 +31, 0.0 +32, 0.0 +33, 0.0 +34, 0.0 +35, 0.0 +36, 30000.0 +37, 0.0 +38, 0.0 +39, 0.0 +40, 0.0 +41, 0.0 +42, 0.0 +43, 0.0 +44, 0.0 +45, 0.0 +46, 0.0 +47, 0.0 +48, 0.0 +49, 0.0 +50, 0.0 +51, 0.0 +52, 0.0 +53, 0.0 +54, 0.0 +55, 30000.0 +56, 0.0 +57, 0.0 +58, 0.0 +59, 0.0 +60, 0.0 +61, 0.0 +62, 0.0 +63, 0.0 +64, 0.0 +65, 0.0 +66, 0.0 +67, 0.0 +68, 0.0 +69, 0.0 +70, 0.0 +71, 0.0 +72, 0.0 +73, 0.0 +74, 30000.0 +75, 0.0 +76, 0.0 +77, 0.0 +78, 0.0 +79, 0.0 +80, 0.0 +81, 0.0 +82, 0.0 +83, 0.0 +84, 0.0 +85, 0.0 +86, 0.0 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[ + ] +} diff --git a/neams/cyclus/out.csv b/neams/cyclus/out.csv new file mode 100644 index 0000000..df3d08c --- /dev/null +++ b/neams/cyclus/out.csv @@ -0,0 +1,65 @@ +CYCLUS +BEGIN trade_flow_prototype 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+END trade_flow_prototype +BEGIN trade_flow_agent 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+END agent_flow_deployed diff --git a/neams/cyclus/out.sqlite b/neams/cyclus/out.sqlite new file mode 100644 index 0000000..78547cb Binary files /dev/null and b/neams/cyclus/out.sqlite differ diff --git a/neams/cyclus/test/.ipynb_checkpoints/test-checkpoint.ipynb b/neams/cyclus/test/.ipynb_checkpoints/test-checkpoint.ipynb new file mode 100644 index 0000000..8a8240f --- /dev/null +++ b/neams/cyclus/test/.ipynb_checkpoints/test-checkpoint.ipynb @@ -0,0 +1,60 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "import sys\n", + "sys.path.append('Users/4ib/Desktop/git/cyclus_gui/neams/cyclus/')\n", + "sys.path.append('../')\n", + "from cyclus_processor import CyclusPostrunner" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [ + "obj = CyclusPostrunner('../out.sqlite')" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.7.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/neams/cyclus/test/test.ipynb b/neams/cyclus/test/test.ipynb index 2dab76f..8a8240f 100644 --- a/neams/cyclus/test/test.ipynb +++ b/neams/cyclus/test/test.ipynb @@ -9,7 +9,7 @@ "import sys\n", "sys.path.append('Users/4ib/Desktop/git/cyclus_gui/neams/cyclus/')\n", "sys.path.append('../')\n", - "from cyclus_processor import CyclusProcessor" + "from cyclus_processor import CyclusPostrunner" ] }, { @@ -18,35 +18,15 @@ "metadata": {}, "outputs": [], "source": [ - "obj = CyclusProcessor('../out.sqlite')" + "obj = CyclusPostrunner('../out.sqlite')" ] }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 10, "metadata": {}, "outputs": [], - "source": [ - "#obj.generate_trade_flow('prototype')" - ] - }, - { - "cell_type": "code", - "execution_count": 4, - "metadata": {}, - "outputs": [], - "source": [ - "#obj.generate_trade_flow('agent')" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "metadata": {}, - "outputs": [], - "source": [ - "obj.generate_agent_flow()" - ] + "source": [] }, { "cell_type": "code", @@ -58,21 +38,21 @@ ], "metadata": { "kernelspec": { - "display_name": "Python 2", + "display_name": "Python 3", "language": "python", - "name": "python2" + "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", - "version": 2 + "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", - 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CyclusRuntimeEnvironment(workbench.WorkbenchRuntimeEnvironment): @@ -30,6 +31,7 @@ def app_name(self): def app_options(self): """list of app-specific options""" opts = [] + # no options return opts @@ -41,39 +43,52 @@ def environment(self): def run_args(self, options): - args = [options.input] + args = [] args.append('-i') args.append(os.path.join(self.temp_xml_path)) args.append('-o') pre, ext = os.path.splitext(options.input) - args.append(os.path.join(options.output_directory, pre + '.sqlite')) + self.outpath = os.path.join(options.output_directory, pre + '.sqlite') + if os.path.exists(self.outpath): + self.echo(1, '#!!!!! Previous output file with name %s exists.' %self.outpath) + self.echo(1, '#!!!!! NOTE THAT Cyclus does not delete and create a new Sqlite file.') + self.echo(1, '#!!!!! It simply adds a new SimId.') + self.echo(1, '#!!!!! So you will have one file with multiple simulation results.') + + + args.append(self.outpath) return args def prerun(self, options): # convert son into xml binpath = os.path.join(here, os.pardir, 'bin') sonjson_path = os.path.join(binpath, 'sonjson') + self.echo(1, "#### Converting SON to XML... ") schema_file_path = os.path.join(here, os.pardir, 'cyclus', 'cyclus.sch') p = subprocess.Popen([sonjson_path, schema_file_path, options.input], stdout=subprocess.PIPE) json_str = p.stdout.read() - temp_json_path = os.path.join(options.working_directory, 'temp.json') + temp_json_path = os.path.join(self.working_directory, 'temp.json') with open(temp_json_path, 'w') as f: f.write(json_str) p = subprocess.Popen([self.executable, '--json-to-xml', temp_json_path], stdout=subprocess.PIPE) xml_str = generate_cyclus_sch.clean_xml(p.stdout.read()) pre, ext = os.path.splitext(options.input) - self.temp_xml_path = os.path.join(options.working_directory, pre+'.xml') + self.temp_xml_path = os.path.join(self.working_directory, pre+'.xml') with open(self.temp_xml_path, 'w') as f: f.write(xml_str) + self.echo(1, "#### Finished converting to XML!") + - #def postrun(self, options): + def postrun(self, options): """actions to perform after the run finishes""" - # here, we are going to try to get that sqlite to be a text file - + # here, we are going to try to get that sqlite to be a csv file + self.echo(1, '#### Postrunner on %s' %self.outpath) + CyclusPostrunner(self.outpath) + self.echo(1, '#### Finished Postrunner')