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diff --git a/_sources/user/install_from_tarball.rst.txt b/_sources/user/install_from_tarball.rst.txt
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old mode 100755
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old mode 100755
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old mode 100755
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diff --git a/_sources/user/tutorial/add_second_reactor.rst.txt b/_sources/user/tutorial/add_second_reactor.rst.txt
old mode 100755
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diff --git a/_sources/user/tutorial/add_sep.rst.txt b/_sources/user/tutorial/add_sep.rst.txt
old mode 100755
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old mode 100755
new mode 100644
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old mode 100755
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old mode 100755
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diff --git a/_sources/user/tutorial/future_work.rst.txt b/_sources/user/tutorial/future_work.rst.txt
old mode 100755
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diff --git a/_sources/user/tutorial/index.rst.txt b/_sources/user/tutorial/index.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/install_launch_cyclus.rst.txt b/_sources/user/tutorial/install_launch_cyclus.rst.txt
old mode 100755
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diff --git a/_sources/user/tutorial/ipython_tour.rst.txt b/_sources/user/tutorial/ipython_tour.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/launch_cyclus.rst.txt b/_sources/user/tutorial/launch_cyclus.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/mod_rxtr.rst.txt b/_sources/user/tutorial/mod_rxtr.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/plot_output.rst.txt b/_sources/user/tutorial/plot_output.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/run_cyclus_native.rst.txt b/_sources/user/tutorial/run_cyclus_native.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/tutorial/sim_parm.rst.txt b/_sources/user/tutorial/sim_parm.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/unit_test.rst.txt b/_sources/user/unit_test.rst.txt
old mode 100755
new mode 100644
diff --git a/_sources/user/virtualbox.rst.txt b/_sources/user/virtualbox.rst.txt
old mode 100755
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diff --git a/_sources/user/writing_input.rst.txt b/_sources/user/writing_input.rst.txt
old mode 100755
new mode 100644
diff --git a/_static/AnlLogo.png b/_static/AnlLogo.png
old mode 100755
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diff --git a/_static/CVT-logo-250pix1.png b/_static/CVT-logo-250pix1.png
old mode 100755
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diff --git a/_static/USNRC.png b/_static/USNRC.png
old mode 100755
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diff --git a/_static/alarmclock.png b/_static/alarmclock.png
old mode 100755
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diff --git a/_static/antipode-bike.jpg b/_static/antipode-bike.jpg
old mode 100755
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diff --git a/_static/basic.css b/_static/basic.css
old mode 100755
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diff --git a/_static/bicyclelady.jpg b/_static/bicyclelady.jpg
old mode 100755
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diff --git a/_static/big_c.ico b/_static/big_c.ico
old mode 100755
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diff --git a/_static/big_c.png b/_static/big_c.png
old mode 100755
new mode 100644
diff --git a/_static/cloud.base.js b/_static/cloud.base.js
old mode 100755
new mode 100644
diff --git a/_static/cloud.css b/_static/cloud.css
old mode 100755
new mode 100644
diff --git a/_static/cloud.js b/_static/cloud.js
old mode 100755
new mode 100644
diff --git a/_static/core-team-2014-05-30.jpg b/_static/core-team-2014-05-30.jpg
old mode 100755
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diff --git a/_static/corner_flourish.png b/_static/corner_flourish.png
old mode 100755
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diff --git a/_static/crest.png b/_static/crest.png
old mode 100755
new mode 100644
diff --git a/_static/curlydivider-left.png b/_static/curlydivider-left.png
old mode 100755
new mode 100644
diff --git a/_static/curlydivider-right.png b/_static/curlydivider-right.png
old mode 100755
new mode 100644
diff --git a/_static/cyclus.css b/_static/cyclus.css
old mode 100755
new mode 100644
diff --git a/_static/doctools.js b/_static/doctools.js
old mode 100755
new mode 100644
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
old mode 100755
new mode 100644
index 5e38838d9..239a9b651
--- a/_static/documentation_options.js
+++ b/_static/documentation_options.js
@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
- VERSION: '(999999.999999)',
+ VERSION: '(1.5.5-492-g3881109d)',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
diff --git a/_static/file.png b/_static/file.png
old mode 100755
new mode 100644
diff --git a/_static/flying_gears.jpg b/_static/flying_gears.jpg
old mode 100755
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diff --git a/_static/gear_flourish_transp.png b/_static/gear_flourish_transp.png
old mode 100755
new mode 100644
diff --git a/_static/header-image.png b/_static/header-image.png
old mode 100755
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diff --git a/_static/icon-caution.png b/_static/icon-caution.png
old mode 100755
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diff --git a/_static/icon-danger.png b/_static/icon-danger.png
old mode 100755
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diff --git a/_static/icon-deprecated.png b/_static/icon-deprecated.png
old mode 100755
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diff --git a/_static/icon-note.png b/_static/icon-note.png
old mode 100755
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diff --git a/_static/icon-seealso.png b/_static/icon-seealso.png
old mode 100755
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diff --git a/_static/icon-todo.png b/_static/icon-todo.png
old mode 100755
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diff --git a/_static/icon-warning.png b/_static/icon-warning.png
old mode 100755
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diff --git a/_static/images/sort_asc.png b/_static/images/sort_asc.png
old mode 100755
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diff --git a/_static/images/sort_asc_disabled.png b/_static/images/sort_asc_disabled.png
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diff --git a/_static/images/sort_both.png b/_static/images/sort_both.png
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diff --git a/_static/images/sort_desc.png b/_static/images/sort_desc.png
old mode 100755
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diff --git a/_static/images/sort_desc_disabled.png b/_static/images/sort_desc_disabled.png
old mode 100755
new mode 100644
diff --git a/_static/jquery.cookie.js b/_static/jquery.cookie.js
old mode 100755
new mode 100644
diff --git a/_static/language_data.js b/_static/language_data.js
old mode 100755
new mode 100644
diff --git a/_static/logo1.png b/_static/logo1.png
old mode 100755
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diff --git a/_static/metal.png b/_static/metal.png
old mode 100755
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diff --git a/_static/minus.png b/_static/minus.png
old mode 100755
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diff --git a/_static/neup_logo_large.png b/_static/neup_logo_large.png
old mode 100755
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diff --git a/_static/nnsa.png b/_static/nnsa.png
old mode 100755
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diff --git a/_static/nsf_logo.png b/_static/nsf_logo.png
old mode 100755
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diff --git a/_static/pennyfarthing-jack.jpg b/_static/pennyfarthing-jack.jpg
old mode 100755
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diff --git a/_static/pivot/bootstrap.min.css b/_static/pivot/bootstrap.min.css
old mode 100755
new mode 100644
diff --git a/_static/pivot/dataTables.bootstrap.js b/_static/pivot/dataTables.bootstrap.js
old mode 100755
new mode 100644
diff --git a/_static/pivot/jquery.dataTables.min.js b/_static/pivot/jquery.dataTables.min.js
old mode 100755
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diff --git a/_static/pivot/jquery_pivot.js b/_static/pivot/jquery_pivot.js
old mode 100755
new mode 100644
diff --git a/_static/pivot/pivot.css b/_static/pivot/pivot.css
old mode 100755
new mode 100644
diff --git a/_static/pivot/pivot.min.js b/_static/pivot/pivot.min.js
old mode 100755
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diff --git a/_static/pivot/subnav.css b/_static/pivot/subnav.css
old mode 100755
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diff --git a/_static/pivot/subnav.js b/_static/pivot/subnav.js
old mode 100755
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diff --git a/_static/plus.png b/_static/plus.png
old mode 100755
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diff --git a/_static/pocket-watch.png b/_static/pocket-watch.png
old mode 100755
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diff --git a/_static/pygments.css b/_static/pygments.css
old mode 100755
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diff --git a/_static/searchtools.js b/_static/searchtools.js
old mode 100755
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diff --git a/_static/smallalarmclock.png b/_static/smallalarmclock.png
old mode 100755
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diff --git a/_static/sp_sketch.jpg b/_static/sp_sketch.jpg
old mode 100755
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diff --git a/_static/sphinx_highlight.js b/_static/sphinx_highlight.js
old mode 100755
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diff --git a/_static/steven-m-johnson-bike.jpeg b/_static/steven-m-johnson-bike.jpeg
old mode 100755
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diff --git a/_static/table_styling.css b/_static/table_styling.css
old mode 100755
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diff --git a/_static/tut_nucid_mass.png b/_static/tut_nucid_mass.png
old mode 100755
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diff --git a/arche/cli.html b/arche/cli.html
old mode 100755
new mode 100644
index 2aef0d277..126571870
--- a/arche/cli.html
+++ b/arche/cli.html
@@ -13,7 +13,7 @@
-
+
diff --git a/arche/cmake.html b/arche/cmake.html
old mode 100755
new mode 100644
index 4e531eefe..2d2ac1bdc
--- a/arche/cmake.html
+++ b/arche/cmake.html
@@ -13,7 +13,7 @@
-
+
diff --git a/arche/custom_tables.html b/arche/custom_tables.html
old mode 100755
new mode 100644
index 1d5116ee1..9a6fd43bf
--- a/arche/custom_tables.html
+++ b/arche/custom_tables.html
@@ -13,7 +13,7 @@
-
+
diff --git a/arche/cycpp.html b/arche/cycpp.html
old mode 100755
new mode 100644
index 158ae167a..967b1c94e
--- a/arche/cycpp.html
+++ b/arche/cycpp.html
@@ -13,7 +13,7 @@
-
+
diff --git a/arche/dbtypes.html b/arche/dbtypes.html
old mode 100755
new mode 100644
index ccf3b859c..0a7235c57
--- a/arche/dbtypes.html
+++ b/arche/dbtypes.html
@@ -13,7 +13,7 @@
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diff --git a/arche/dbtypes.json b/arche/dbtypes.json
old mode 100755
new mode 100644
index f65af70bd..b76094aa0
--- a/arche/dbtypes.json
+++ b/arche/dbtypes.json
@@ -1536,597 +1536,597 @@
[235, "VL_VECTOR_PAIR_PAIR_DOUBLE_DOUBLE_MAP_VL_STRING_DOUBLE", "std::vector, std::map > > > ", 5, "HDF5", "v1.4", 0, ["VL_VECTOR", ["PAIR", ["PAIR", "DOUBLE", "DOUBLE"], ["MAP", "VL_STRING", "DOUBLE"]]]],
[236, "VL_VECTOR_PAIR_PAIR_DOUBLE_DOUBLE_VL_MAP_STRING_DOUBLE", "std::vector, std::map > > > ", 5, "HDF5", "v1.4", 0, ["VL_VECTOR", ["PAIR", ["PAIR", "DOUBLE", "DOUBLE"], ["VL_MAP", "STRING", "DOUBLE"]]]],
[237, "VL_VECTOR_PAIR_PAIR_DOUBLE_DOUBLE_VL_MAP_VL_STRING_DOUBLE", "std::vector, std::map > > > ", 5, "HDF5", "v1.4", 0, ["VL_VECTOR", ["PAIR", ["PAIR", "DOUBLE", "DOUBLE"], ["VL_MAP", "VL_STRING", "DOUBLE"]]]]
- ,[0, "BOOL", "bool", 0, "SQLite", "v999999.999999", 1, "BOOL", false],
- [1, "INT", "int", 0, "SQLite", "v999999.999999", 1, "INT", false],
- [2, "FLOAT", "float", 0, "SQLite", "v999999.999999", 1, "FLOAT", false],
- [3, "DOUBLE", "double", 0, "SQLite", "v999999.999999", 1, "DOUBLE", false],
- [4, "STRING", "std::string", 1, "SQLite", "v999999.999999", 1, "STRING", false],
- [5, "VL_STRING", "std::string", 1, "SQLite", "v999999.999999", 1, "VL_STRING", true],
- [6, "BLOB", "cyclus::Blob", 0, "SQLite", "v999999.999999", 1, "BLOB", true],
- [7, "UUID", "boost::uuids::uuid", 0, "SQLite", "v999999.999999", 1, "UUID", false],
- [8, "VECTOR_BOOL", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VECTOR", "BOOL"], false],
- [9, "VL_VECTOR_BOOL", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VL_VECTOR", "BOOL"], true],
- [10, "VECTOR_INT", "std::vector", 1, "SQLite", "v999999.999999", 1, ["VECTOR", "INT"], false],
- [11, "VL_VECTOR_INT", "std::vector", 1, "SQLite", "v999999.999999", 1, ["VL_VECTOR", "INT"], true],
- [12, "VECTOR_FLOAT", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VECTOR", "FLOAT"], false],
- [13, "VL_VECTOR_FLOAT", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VL_VECTOR", "FLOAT"], true],
- [14, "VECTOR_DOUBLE", "std::vector", 1, "SQLite", "v999999.999999", 1, ["VECTOR", "DOUBLE"], false],
- [15, "VL_VECTOR_DOUBLE", "std::vector", 1, "SQLite", "v999999.999999", 1, ["VL_VECTOR", "DOUBLE"], true],
- [16, "VECTOR_STRING", "std::vector", 2, "SQLite", "v999999.999999", 1, ["VECTOR", "STRING"], false],
- [17, "VL_VECTOR_STRING", "std::vector", 2, "SQLite", "v999999.999999", 1, ["VL_VECTOR", "STRING"], true],
- [18, "VECTOR_VL_STRING", "std::vector", 2, "SQLite", "v999999.999999", 1, ["VECTOR", "VL_STRING"], false],
- [19, "VL_VECTOR_VL_STRING", "std::vector", 2, "SQLite", "v999999.999999", 1, ["VL_VECTOR", "VL_STRING"], true],
- [20, "VECTOR_BLOB", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VECTOR", "BLOB"], false],
- [21, "VL_VECTOR_BLOB", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VL_VECTOR", "BLOB"], true],
- [22, "VECTOR_UUID", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VECTOR", "UUID"], false],
- [23, "VL_VECTOR_UUID", "std::vector", 1, "SQLite", "v999999.999999", 0, ["VL_VECTOR", "UUID"], true],
- [24, "SET_BOOL", "std::set", 1, "SQLite", "v999999.999999", 0, ["SET", "BOOL"], false],
- [25, "VL_SET_BOOL", "std::set", 1, "SQLite", "v999999.999999", 0, ["VL_SET", "BOOL"], true],
- [26, "SET_INT", "std::set", 1, "SQLite", "v999999.999999", 1, ["SET", "INT"], false],
- [27, "VL_SET_INT", "std::set", 1, "SQLite", "v999999.999999", 1, ["VL_SET", "INT"], true],
- [28, "SET_FLOAT", "std::set", 1, "SQLite", "v999999.999999", 0, ["SET", "FLOAT"], false],
- [29, "VL_SET_FLOAT", "std::set", 1, "SQLite", "v999999.999999", 0, ["VL_SET", "FLOAT"], true],
- [30, "SET_DOUBLE", "std::set", 1, "SQLite", "v999999.999999", 0, ["SET", "DOUBLE"], false],
- [31, "VL_SET_DOUBLE", "std::set", 1, "SQLite", "v999999.999999", 0, ["VL_SET", "DOUBLE"], true],
- [32, "SET_STRING", "std::set", 2, "SQLite", "v999999.999999", 1, ["SET", "STRING"], false],
- [33, "VL_SET_STRING", "std::set", 2, "SQLite", "v999999.999999", 1, ["VL_SET", "STRING"], true],
- [34, "SET_VL_STRING", "std::set", 2, "SQLite", "v999999.999999", 1, ["SET", "VL_STRING"], false],
- [35, "VL_SET_VL_STRING", "std::set", 2, "SQLite", "v999999.999999", 1, ["VL_SET", "VL_STRING"], true],
- [36, "SET_BLOB", "std::set", 1, "SQLite", "v999999.999999", 0, ["SET", "BLOB"], false],
- [37, "VL_SET_BLOB", "std::set", 1, "SQLite", "v999999.999999", 0, ["VL_SET", "BLOB"], true],
- [38, "SET_UUID", "std::set", 1, "SQLite", "v999999.999999", 0, ["SET", "UUID"], false],
- [39, "VL_SET_UUID", "std::set", 1, "SQLite", "v999999.999999", 0, ["VL_SET", "UUID"], true],
- [40, "LIST_BOOL", "std::list", 1, "SQLite", "v999999.999999", 0, ["LIST", "BOOL"], false],
- [41, "VL_LIST_BOOL", "std::list", 1, "SQLite", "v999999.999999", 0, ["VL_LIST", "BOOL"], true],
- [42, "LIST_INT", "std::list", 1, "SQLite", "v999999.999999", 1, ["LIST", "INT"], false],
- [43, "VL_LIST_INT", "std::list", 1, "SQLite", "v999999.999999", 1, ["VL_LIST", "INT"], true],
- [44, "LIST_FLOAT", "std::list", 1, "SQLite", "v999999.999999", 0, ["LIST", "FLOAT"], false],
- [45, "VL_LIST_FLOAT", "std::list", 1, "SQLite", "v999999.999999", 0, ["VL_LIST", "FLOAT"], true],
- [46, "LIST_DOUBLE", "std::list", 1, "SQLite", "v999999.999999", 0, ["LIST", "DOUBLE"], false],
- [47, "VL_LIST_DOUBLE", "std::list", 1, "SQLite", "v999999.999999", 0, ["VL_LIST", "DOUBLE"], true],
- [48, "LIST_STRING", "std::list", 2, "SQLite", "v999999.999999", 1, ["LIST", "STRING"], false],
- [49, "VL_LIST_STRING", "std::list", 2, "SQLite", "v999999.999999", 1, ["VL_LIST", "STRING"], true],
- [50, "LIST_VL_STRING", "std::list", 2, "SQLite", "v999999.999999", 1, ["LIST", "VL_STRING"], false],
- [51, "VL_LIST_VL_STRING", "std::list", 2, "SQLite", "v999999.999999", 1, ["VL_LIST", "VL_STRING"], true],
- [52, "LIST_BLOB", "std::list", 1, "SQLite", "v999999.999999", 0, ["LIST", "BLOB"], false],
- [53, "VL_LIST_BLOB", "std::list", 1, "SQLite", "v999999.999999", 0, ["VL_LIST", "BLOB"], true],
- [54, "LIST_UUID", "std::list", 1, "SQLite", "v999999.999999", 0, ["LIST", "UUID"], false],
- [55, "VL_LIST_UUID", "std::list", 1, "SQLite", "v999999.999999", 0, ["VL_LIST", "UUID"], true],
- [56, "PAIR_INT_BOOL", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "BOOL"], false],
- [57, "PAIR_INT_INT", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "INT"], false],
- [58, "PAIR_INT_FLOAT", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "FLOAT"], false],
- [59, "PAIR_INT_DOUBLE", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "DOUBLE"], false],
- [60, "PAIR_INT_STRING", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "STRING"], false],
- [61, "PAIR_INT_VL_STRING", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "VL_STRING"], false],
- [62, "PAIR_INT_BLOB", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "BLOB"], false],
- [63, "PAIR_INT_UUID", "std::pair", 0, "SQLite", "v999999.999999", 0, ["PAIR", "INT", "UUID"], false],
- [64, "PAIR_STRING_BOOL", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "BOOL"], false],
- [65, "PAIR_STRING_INT", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "INT"], false],
- [66, "PAIR_STRING_FLOAT", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "FLOAT"], false],
- [67, "PAIR_STRING_DOUBLE", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "DOUBLE"], false],
- [68, "PAIR_STRING_STRING", "std::pair", 2, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "STRING"], false],
- [69, "PAIR_STRING_VL_STRING", "std::pair", 2, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "VL_STRING"], false],
- [70, "PAIR_STRING_BLOB", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "BLOB"], false],
- [71, "PAIR_STRING_UUID", "std::pair", 1, "SQLite", "v999999.999999", 0, ["PAIR", "STRING", "UUID"], false],
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