diff --git a/docker/Dockerfile b/docker/Dockerfile
index e7c4c1b3..f4678f38 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -9,13 +9,13 @@ RUN make gh-preview
 
 WORKDIR /cyclus/build
 RUN make cyclusdoc && \
-    mkdir -p /cyclus.github.com/${BUILDDIR}/cyclus/api && \
-    cp -r doc/html/* /cyclus.github.com/${BUILDDIR}/cyclus/api/
+    mkdir -p /cyclus.github.com/${BUILDDIR}/cyclus && \
+    cp -r doc/html/* /cyclus.github.com/${BUILDDIR}/cyclus/
 
 WORKDIR /cycamore/build
 RUN make cycamoredoc && \
-    mkdir -p /cyclus.github.com/${BUILDDIR}/cycamore/api && \
-    cp -r doc/html/* /cyclus.github.com/${BUILDDIR}/cycamore/api/
+    mkdir -p /cyclus.github.com/${BUILDDIR}/cycamore && \
+    cp -r doc/html/* /cyclus.github.com/${BUILDDIR}/cycamore/
 
 
 FROM scratch
diff --git a/source/arche/sim_init.rst b/source/arche/sim_init.rst
index c9e09d0d..749df73a 100644
--- a/source/arche/sim_init.rst
+++ b/source/arche/sim_init.rst
@@ -24,7 +24,7 @@ used to automate the generation of code for the following functions:
     void InitFrom(cyclus::Agent*);
 
 When the preprocessor isn't sufficient, read the `API documents
-<http://fuelcycle.org/cyclus/api/classcyclus_1_1Agent.html>`_ for the functions
+</cyclus/classcyclus_1_1Agent.html>`_ for the functions
 listed above VERY CAREFULLY. There are also a few other functions related to
 initialization that are important to understand well:
 
diff --git a/source/arche/testing.rst b/source/arche/testing.rst
index 49aed51c..dc3f0870 100644
--- a/source/arche/testing.rst
+++ b/source/arche/testing.rst
@@ -278,7 +278,7 @@ The parameters that can be set (or not) for each source/sink are:
 * ``lifetime(int)``: The number of time steps the source/sink is deployed
   until automatic decommissioning. Default is infinite (never decommissioned).
 
-For more details, you can read the `MockSim API docs <http://fuelcycle.org/cyclus/api/classcyclus_1_1MockSim.html>`_.
+For more details, you can read the `MockSim API docs </cyclus/classcyclus_1_1MockSim.html>`_.
 Querying simulation results can be accomplished by getting a reference to the
 in-memory database generated.  Not all data that is present in normal
 full-stack simulations is available.  However, most of the key core tables are
@@ -307,9 +307,9 @@ a sample query and test you might write using the gtest framework:
     EXPECT_DOUBLE_EQ(9.5, mq.mass(922380000));
 
 You can read API documentation for the `queryable database
-<http://fuelcycle.org/cyclus/api/classcyclus_1_1QueryableBackend.html>`_ and
+</cyclus/classcyclus_1_1QueryableBackend.html>`_ and
 `query results
-<http://fuelcycle.org/cyclus/api/classcyclus_1_1QueryResult.html>`_ for more
+</cyclus/classcyclus_1_1QueryResult.html>`_ for more
 details.
 
 Debugging
diff --git a/source/arche/toolkit.rst b/source/arche/toolkit.rst
index 27719d0e..782d4cb5 100644
--- a/source/arche/toolkit.rst
+++ b/source/arche/toolkit.rst
@@ -61,7 +61,7 @@ in one of the following ways:
         mybuf = ts.ResBufMaterialInv(capacity='buf_cap')
 
 You can read the `ResBuf API documentation
-<http://fuelcycle.org/cyclus/api/classcyclus_1_1toolkit_1_1ResBuf.html>`_ for
+</cyclus/classcyclus_1_1toolkit_1_1ResBuf.html>`_ for
 more details on how to use the buffer.
 
 MatQuery [C++]
diff --git a/source/atemplates/sidebar.html b/source/atemplates/sidebar.html
index 3df52f71..46b04527 100644
--- a/source/atemplates/sidebar.html
+++ b/source/atemplates/sidebar.html
@@ -8,8 +8,8 @@ <h3>{{ _('Useful Pages') }}</h3>
     <li><a href="/arche/index.html">Archetype Developer Guide</a></li>
     <li><a href="/arche/tutorial_cpp/index.html">Archetype Developer C++ Tutorial</a></li>
     <li><a href="/arche/tutorial_py/index.html">Archetype Developer Python Tutorial</a></li>
-    <li><a href="/cyclus/api/">Cyclus API Documentation</a></li>
-    <li><a href="/cycamore/api/">Cycamore API Documentation</a></li>
+    <li><a href="/cyclus/">Cyclus API Documentation</a></li>
+    <li><a href="/cycamore/">Cycamore API Documentation</a></li>
     <li><a href="/basics/glossary.html">Glossary</a></li>
     <li><a href="mailto:cyclus-users+subscribe@googlegroups.com?subject=Subscribe&body=Send this message to subscribe to the list">Join</a> the
       <a href="https://groups.google.com/forum/#!forum/cyclus-users" target="_blank"><span style="font-variant:small-caps">Cyclus</span> Users</a> mailing list.
diff --git a/source/kernel/style_guide.rst b/source/kernel/style_guide.rst
index e13aa95c..cdcce593 100644
--- a/source/kernel/style_guide.rst
+++ b/source/kernel/style_guide.rst
@@ -15,8 +15,8 @@ The definitive documentation of any software is the source code itself.
 |cyclus| will relies on Doxygen for automation of rich documentation from
 appropriately formatted comments in the source code. Current Doxygen 
 documentation can be found online for both `cyclus 
-<http://fuelcycle.org/cyclus/api/>`_ and `cycamore 
-<http://fuelcycle.org/cycamore/api/>`_.  These pages will be updated nightly.
+</cyclus/>`_ and `cycamore 
+</cycamore/>`_.  These pages will be updated nightly.
 
 Documentation is a make target in the CMake build system. Documentation
 will automatically be built when you `make all`. You can build only the