DESCRIPTION

Package: crisprBase
Version: 1.9.1
Date: 2024-07-23
Title: Base functions and classes for CRISPR gRNA design
Authors@R: person("Jean-Philippe", "Fortin", email = "fortin946@gmail.com", role = c("aut", "cre"))
Depends: 
    utils,
    methods,
    R (>= 4.1)
Imports:
    BiocGenerics,
    Biostrings,
    GenomicRanges,
    graphics,
    IRanges,
    S4Vectors,
    stringr
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    testthat
biocViews: CRISPR, FunctionalGenomics
Description: Provides S4 classes for general nucleases, CRISPR nucleases,
    CRISPR nickases, and base editors.Several CRISPR-specific genome
    arithmetic functions are implemented to help extract genomic coordinates
    of spacer and protospacer sequences. Commonly-used CRISPR nuclease objects
    are provided that can be readily used in other packages.
    Both DNA- and RNA-targeting nucleases are supported.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
VignetteBuilder: knitr
BugReports: https://github.com/crisprVerse/crisprBase/issues
URL: https://github.com/crisprVerse/crisprBase
Collate: 
    'AllGenerics.R'
    'rebase.R'
    'Nuclease-class.R'    
    'Nickase-class.R'
    'CrisprNuclease-class.R'
    'CrisprNickase-class.R'
    'BaseEditor-class.R'
    'arithmetics.R'
    'data.R'
    'utils.R'
    'converters.R'
    'annotateMismatches.R'
LazyData: true