Problem with saving to the database

[afvalzak]

I have the following setup:
1 JAVA Program using your SQLite driver, this communicates with two databases.
One is the settings database(settings.sqlite) the other is the work database.
In the work database I can add rows/update/delete without problems.
When using the settings database I can do the same, but whenever I restart my application all settings are lost.

When I try to use 'autocommit' (before the execute it is set to false and afterwards it is set to true I get the following error:
java.sql.SQLException: SQL logic error or missing database