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ssaha.mf
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OPTIONS=-tags 1 -rtype abi -score 30 -seeds 5 -output ssaha2
query.fastq.0 query.fastq.1 query.fastq.2 query.fastq.3 query.fastq.4 query.fastq.5 query.fastq.6 query.fastq.7 query.fastq.8 query.fastq.9 query.fastq.10 query.fastq.11 query.fastq.12 query.fastq.13 query.fastq.14 query.fastq.15 query.fastq.16 query.fastq.17 query.fastq.18 query.fastq.19 query.fastq.20 query.fastq.21 query.fastq.22 query.fastq.23 query.fastq.24 query.fastq.25 query.fastq.26 query.fastq.27 query.fastq.28 query.fastq.29 query.fastq.30 query.fastq.31 query.fastq.32 query.fastq.33 query.fastq.34 query.fastq.35 query.fastq.36 query.fastq.37 query.fastq.38 query.fastq.39 query.fastq.40 query.fastq.41 query.fastq.42 query.fastq.43 query.fastq.44 query.fastq.45 query.fastq.46 query.fastq.47 query.fastq.48 query.fastq.49 query.fastq.50 query.fastq.51 query.fastq.52 query.fastq.53 query.fastq.54 query.fastq.55 query.fastq.56 query.fastq.57 query.fastq.58 query.fastq.59 query.fastq.60 query.fastq.61 query.fastq.62 query.fastq.63 query.fastq.64 query.fastq.65 query.fastq.66 query.fastq.67 query.fastq.68 query.fastq.69 query.fastq.70 query.fastq.71 query.fastq.72 query.fastq.73 query.fastq.74 query.fastq.75 query.fastq.76 query.fastq.77 query.fastq.78 query.fastq.79 query.fastq.80 query.fastq.81 query.fastq.82 query.fastq.83 query.fastq.84 query.fastq.85 query.fastq.86 query.fastq.87 query.fastq.88 query.fastq.89 query.fastq.90 query.fastq.91 query.fastq.92 query.fastq.93 query.fastq.94 query.fastq.95 query.fastq.96 query.fastq.97 query.fastq.98 query.fastq.99 : query.fastq fastq_reduce
LOCAL ./fastq_reduce query.fastq 1000
output.fastq.0: query.fastq.0 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.0 > output.fastq.0
output.fastq.1: query.fastq.1 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.1 > output.fastq.1
output.fastq.2: query.fastq.2 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.2 > output.fastq.2
output.fastq.3: query.fastq.3 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.3 > output.fastq.3
output.fastq.4: query.fastq.4 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.4 > output.fastq.4
output.fastq.5: query.fastq.5 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.5 > output.fastq.5
output.fastq.6: query.fastq.6 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.6 > output.fastq.6
output.fastq.7: query.fastq.7 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.7 > output.fastq.7
output.fastq.8: query.fastq.8 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.8 > output.fastq.8
output.fastq.9: query.fastq.9 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.9 > output.fastq.9
output.fastq.10: query.fastq.10 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.10 > output.fastq.10
output.fastq.11: query.fastq.11 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.11 > output.fastq.11
output.fastq.12: query.fastq.12 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.12 > output.fastq.12
output.fastq.13: query.fastq.13 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.13 > output.fastq.13
output.fastq.14: query.fastq.14 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.14 > output.fastq.14
output.fastq.15: query.fastq.15 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.15 > output.fastq.15
output.fastq.16: query.fastq.16 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.16 > output.fastq.16
output.fastq.17: query.fastq.17 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.17 > output.fastq.17
output.fastq.18: query.fastq.18 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.18 > output.fastq.18
output.fastq.19: query.fastq.19 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.19 > output.fastq.19
output.fastq.20: query.fastq.20 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.20 > output.fastq.20
output.fastq.21: query.fastq.21 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.21 > output.fastq.21
output.fastq.22: query.fastq.22 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.22 > output.fastq.22
output.fastq.23: query.fastq.23 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.23 > output.fastq.23
output.fastq.24: query.fastq.24 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.24 > output.fastq.24
output.fastq.25: query.fastq.25 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.25 > output.fastq.25
output.fastq.26: query.fastq.26 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.26 > output.fastq.26
output.fastq.27: query.fastq.27 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.27 > output.fastq.27
output.fastq.28: query.fastq.28 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.28 > output.fastq.28
output.fastq.29: query.fastq.29 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.29 > output.fastq.29
output.fastq.30: query.fastq.30 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.30 > output.fastq.30
output.fastq.31: query.fastq.31 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.31 > output.fastq.31
output.fastq.32: query.fastq.32 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.32 > output.fastq.32
output.fastq.33: query.fastq.33 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.33 > output.fastq.33
output.fastq.34: query.fastq.34 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.34 > output.fastq.34
output.fastq.35: query.fastq.35 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.35 > output.fastq.35
output.fastq.36: query.fastq.36 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.36 > output.fastq.36
output.fastq.37: query.fastq.37 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.37 > output.fastq.37
output.fastq.38: query.fastq.38 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.38 > output.fastq.38
output.fastq.39: query.fastq.39 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.39 > output.fastq.39
output.fastq.40: query.fastq.40 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.40 > output.fastq.40
output.fastq.41: query.fastq.41 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.41 > output.fastq.41
output.fastq.42: query.fastq.42 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.42 > output.fastq.42
output.fastq.43: query.fastq.43 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.43 > output.fastq.43
output.fastq.44: query.fastq.44 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.44 > output.fastq.44
output.fastq.45: query.fastq.45 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.45 > output.fastq.45
output.fastq.46: query.fastq.46 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.46 > output.fastq.46
output.fastq.47: query.fastq.47 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.47 > output.fastq.47
output.fastq.48: query.fastq.48 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.48 > output.fastq.48
output.fastq.49: query.fastq.49 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.49 > output.fastq.49
output.fastq.50: query.fastq.50 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.50 > output.fastq.50
output.fastq.51: query.fastq.51 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.51 > output.fastq.51
output.fastq.52: query.fastq.52 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.52 > output.fastq.52
output.fastq.53: query.fastq.53 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.53 > output.fastq.53
output.fastq.54: query.fastq.54 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.54 > output.fastq.54
output.fastq.55: query.fastq.55 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.55 > output.fastq.55
output.fastq.56: query.fastq.56 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.56 > output.fastq.56
output.fastq.57: query.fastq.57 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.57 > output.fastq.57
output.fastq.58: query.fastq.58 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.58 > output.fastq.58
output.fastq.59: query.fastq.59 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.59 > output.fastq.59
output.fastq.60: query.fastq.60 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.60 > output.fastq.60
output.fastq.61: query.fastq.61 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.61 > output.fastq.61
output.fastq.62: query.fastq.62 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.62 > output.fastq.62
output.fastq.63: query.fastq.63 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.63 > output.fastq.63
output.fastq.64: query.fastq.64 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.64 > output.fastq.64
output.fastq.65: query.fastq.65 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.65 > output.fastq.65
output.fastq.66: query.fastq.66 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.66 > output.fastq.66
output.fastq.67: query.fastq.67 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.67 > output.fastq.67
output.fastq.68: query.fastq.68 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.68 > output.fastq.68
output.fastq.69: query.fastq.69 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.69 > output.fastq.69
output.fastq.70: query.fastq.70 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.70 > output.fastq.70
output.fastq.71: query.fastq.71 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.71 > output.fastq.71
output.fastq.72: query.fastq.72 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.72 > output.fastq.72
output.fastq.73: query.fastq.73 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.73 > output.fastq.73
output.fastq.74: query.fastq.74 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.74 > output.fastq.74
output.fastq.75: query.fastq.75 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.75 > output.fastq.75
output.fastq.76: query.fastq.76 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.76 > output.fastq.76
output.fastq.77: query.fastq.77 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.77 > output.fastq.77
output.fastq.78: query.fastq.78 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.78 > output.fastq.78
output.fastq.79: query.fastq.79 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.79 > output.fastq.79
output.fastq.80: query.fastq.80 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.80 > output.fastq.80
output.fastq.81: query.fastq.81 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.81 > output.fastq.81
output.fastq.82: query.fastq.82 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.82 > output.fastq.82
output.fastq.83: query.fastq.83 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.83 > output.fastq.83
output.fastq.84: query.fastq.84 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.84 > output.fastq.84
output.fastq.85: query.fastq.85 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.85 > output.fastq.85
output.fastq.86: query.fastq.86 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.86 > output.fastq.86
output.fastq.87: query.fastq.87 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.87 > output.fastq.87
output.fastq.88: query.fastq.88 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.88 > output.fastq.88
output.fastq.89: query.fastq.89 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.89 > output.fastq.89
output.fastq.90: query.fastq.90 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.90 > output.fastq.90
output.fastq.91: query.fastq.91 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.91 > output.fastq.91
output.fastq.92: query.fastq.92 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.92 > output.fastq.92
output.fastq.93: query.fastq.93 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.93 > output.fastq.93
output.fastq.94: query.fastq.94 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.94 > output.fastq.94
output.fastq.95: query.fastq.95 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.95 > output.fastq.95
output.fastq.96: query.fastq.96 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.96 > output.fastq.96
output.fastq.97: query.fastq.97 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.97 > output.fastq.97
output.fastq.98: query.fastq.98 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.98 > output.fastq.98
output.fastq.99: query.fastq.99 db.fastq ssaha2
./ssaha2 $OPTIONS db.fastq query.fastq.99 > output.fastq.99
output.fastq: output.fastq.0 output.fastq.1 output.fastq.2 output.fastq.3 output.fastq.4 output.fastq.5 output.fastq.6 output.fastq.7 output.fastq.8 output.fastq.9 output.fastq.10 output.fastq.11 output.fastq.12 output.fastq.13 output.fastq.14 output.fastq.15 output.fastq.16 output.fastq.17 output.fastq.18 output.fastq.19 output.fastq.20 output.fastq.21 output.fastq.22 output.fastq.23 output.fastq.24 output.fastq.25 output.fastq.26 output.fastq.27 output.fastq.28 output.fastq.29 output.fastq.30 output.fastq.31 output.fastq.32 output.fastq.33 output.fastq.34 output.fastq.35 output.fastq.36 output.fastq.37 output.fastq.38 output.fastq.39 output.fastq.40 output.fastq.41 output.fastq.42 output.fastq.43 output.fastq.44 output.fastq.45 output.fastq.46 output.fastq.47 output.fastq.48 output.fastq.49 output.fastq.50 output.fastq.51 output.fastq.52 output.fastq.53 output.fastq.54 output.fastq.55 output.fastq.56 output.fastq.57 output.fastq.58 output.fastq.59 output.fastq.60 output.fastq.61 output.fastq.62 output.fastq.63 output.fastq.64 output.fastq.65 output.fastq.66 output.fastq.67 output.fastq.68 output.fastq.69 output.fastq.70 output.fastq.71 output.fastq.72 output.fastq.73 output.fastq.74 output.fastq.75 output.fastq.76 output.fastq.77 output.fastq.78 output.fastq.79 output.fastq.80 output.fastq.81 output.fastq.82 output.fastq.83 output.fastq.84 output.fastq.85 output.fastq.86 output.fastq.87 output.fastq.88 output.fastq.89 output.fastq.90 output.fastq.91 output.fastq.92 output.fastq.93 output.fastq.94 output.fastq.95 output.fastq.96 output.fastq.97 output.fastq.98 output.fastq.99
LOCAL cat output.fastq.0 output.fastq.1 output.fastq.2 output.fastq.3 output.fastq.4 output.fastq.5 output.fastq.6 output.fastq.7 output.fastq.8 output.fastq.9 output.fastq.10 output.fastq.11 output.fastq.12 output.fastq.13 output.fastq.14 output.fastq.15 output.fastq.16 output.fastq.17 output.fastq.18 output.fastq.19 output.fastq.20 output.fastq.21 output.fastq.22 output.fastq.23 output.fastq.24 output.fastq.25 output.fastq.26 output.fastq.27 output.fastq.28 output.fastq.29 output.fastq.30 output.fastq.31 output.fastq.32 output.fastq.33 output.fastq.34 output.fastq.35 output.fastq.36 output.fastq.37 output.fastq.38 output.fastq.39 output.fastq.40 output.fastq.41 output.fastq.42 output.fastq.43 output.fastq.44 output.fastq.45 output.fastq.46 output.fastq.47 output.fastq.48 output.fastq.49 output.fastq.50 output.fastq.51 output.fastq.52 output.fastq.53 output.fastq.54 output.fastq.55 output.fastq.56 output.fastq.57 output.fastq.58 output.fastq.59 output.fastq.60 output.fastq.61 output.fastq.62 output.fastq.63 output.fastq.64 output.fastq.65 output.fastq.66 output.fastq.67 output.fastq.68 output.fastq.69 output.fastq.70 output.fastq.71 output.fastq.72 output.fastq.73 output.fastq.74 output.fastq.75 output.fastq.76 output.fastq.77 output.fastq.78 output.fastq.79 output.fastq.80 output.fastq.81 output.fastq.82 output.fastq.83 output.fastq.84 output.fastq.85 output.fastq.86 output.fastq.87 output.fastq.88 output.fastq.89 output.fastq.90 output.fastq.91 output.fastq.92 output.fastq.93 output.fastq.94 output.fastq.95 output.fastq.96 output.fastq.97 output.fastq.98 output.fastq.99 > output.fastq