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mimic_env.yml
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mimic_env.yml
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name: mimic
channels:
- conda-forge
- bioconda
- defaults
- default
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.12=h4ab18f5_0
- asttokens=2.4.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- bedtools=2.31.1=hf5e1c6e_2
- biopython=1.84=py39hd3abc70_0
- blast=2.16.0=hc155240_2
- bowtie2=2.5.4=h7071971_4
- bracken=3.0=h4ac6f70_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- bwa=0.7.18=he4a0461_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.33.1=heb4867d_0
- ca-certificates=2024.7.4=hbcca054_0
- cairo=1.18.0=h3faef2a_0
- certifi=2024.7.4=pyhd8ed1ab_0
- comm=0.2.2=pyhd8ed1ab_0
- contourpy=1.2.1=py39h7633fee_0
- curl=8.8.0=he654da7_1
- cycler=0.12.1=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.8.5=py39h98e3656_0
- decorator=5.1.1=pyhd8ed1ab_0
- entrez-direct=22.4=he881be0_0
- ete3=3.1.3=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- fastani=1.34=h4dfc31f_3
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.53.1=py39hcd6043d_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- genometools-genometools=1.6.5=py39h33ebc56_3
- gettext=0.22.5=he02047a_3
- gettext-tools=0.22.5=he02047a_3
- glib=2.80.2=hf974151_0
- glib-tools=2.80.2=hb6ce0ca_0
- graphite2=1.3.13=h59595ed_1003
- gsl=2.7=he838d99_0
- gst-plugins-base=1.24.4=h9ad1361_0
- gstreamer=1.24.4=haf2f30d_0
- harfbuzz=8.5.0=hfac3d4d_0
- htseq=2.0.5=py39h91a4a08_2
- htslib=1.20=h5efdd21_2
- icu=73.2=h59595ed_0
- importlib-metadata=8.4.0=pyha770c72_0
- importlib-resources=6.4.4=pyhd8ed1ab_0
- importlib_metadata=8.4.0=hd8ed1ab_0
- importlib_resources=6.4.4=pyhd8ed1ab_0
- ipykernel=6.29.5=pyh3099207_0
- ipython=8.18.1=pyh707e725_3
- jedi=0.19.1=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- jupyter_client=8.6.2=pyhd8ed1ab_0
- jupyter_core=5.7.2=py39hf3d152e_0
- k8=0.2.5=hdcf5f25_4
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py39h7633fee_1
- kraken2=2.1.3=pl5321hdcf5f25_1
- krb5=1.21.3=h659f571_0
- lame=3.100=h166bdaf_1003
- last=1574=h43eeafb_0
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=hf3520f5_7
- lemur=1.0.1=hdfd78af_0
- lerc=4.0.0=h27087fc_0
- libasprintf=0.22.5=he8f35ee_3
- libasprintf-devel=0.22.5=he8f35ee_3
- libblas=3.9.0=23_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=23_linux64_openblas
- libclang-cpp15=15.0.7=default_h127d8a8_5
- libclang13=18.1.7=default_h087397f_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.8.0=hca28451_1
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc=14.1.0=h77fa898_1
- libgcc-ng=14.1.0=h69a702a_1
- libgcrypt=1.11.0=h4ab18f5_1
- libgettextpo=0.22.5=he02047a_3
- libgettextpo-devel=0.22.5=he02047a_3
- libgfortran=14.1.0=h69a702a_1
- libgfortran-ng=14.1.0=h69a702a_1
- libgfortran5=14.1.0=hc5f4f2c_1
- libglib=2.80.2=hf974151_0
- libgomp=14.1.0=h77fa898_1
- libgpg-error=1.50=h4f305b6_0
- libiconv=1.17=hd590300_2
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=23_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libllvm18=18.1.7=hb77312f_0
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libogg=1.3.5=h4ab18f5_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.43=h2797004_0
- libpq=16.4=h482b261_0
- libsndfile=1.2.2=hc60ed4a_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.1.0=hc0a3c3a_1
- libstdcxx-ng=14.1.0=h4852527_1
- libsystemd0=256.5=hb6d7363_0
- libtiff=4.6.0=h1dd3fc0_3
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.7.0=h662e7e4_0
- libxml2=2.12.7=hc051c1a_1
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.2.13=h4ab18f5_6
- lxml=5.2.2=py39h8a3eb29_0
- lz4-c=1.9.4=hcb278e6_0
- matplotlib-base=3.9.2=py39h0565ad7_0
- matplotlib-inline=0.1.7=pyhd8ed1ab_0
- minimap2=2.28=he4a0461_3
- mpg123=1.32.6=h59595ed_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.3.0=hf1915f5_4
- mysql-libs=8.3.0=hca2cd23_4
- nanosim=3.2.0=hdfd78af_0
- ncbi-datasets-cli=16.27.1=ha770c72_0
- ncbi-vdb=3.1.1=h4ac6f70_1
- ncurses=6.5=he02047a_1
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.100=hca3bf56_0
- numpy=1.26.4=py39h474f0d3_0
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.3.1=hb9d3cd8_3
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.2.2=py39hfc16268_1
- pango=1.54.0=h84a9a3c_0
- parallel=20240722=ha770c72_0
- parso=0.8.4=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre2=10.43=hcad00b1_0
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.21=pl5321hd590300_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_1
- perl-json-xs=4.03=pl5321h4ac6f70_3
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- piecewise-regression=1.1.2=pyhd8ed1ab_0
- pillow=10.3.0=py39h90c7501_0
- pip=24.2=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- ply=3.11=pyhd8ed1ab_2
- popt=1.16=h0b475e3_2002
- prompt-toolkit=3.0.47=pyha770c72_0
- psutil=6.0.0=py39hd3abc70_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio-client=17.0=hb77b528_0
- pure_eval=0.2.3=pyhd8ed1ab_0
- pybedtools=0.10.0=py39hdf45acc_2
- pygments=2.18.0=pyhd8ed1ab_0
- pyparsing=3.1.4=pyhd8ed1ab_0
- pyqt=5.15.9=py39h52134e7_5
- pyqt5-sip=12.12.2=py39h3d6467e_5
- pysam=0.22.1=py39h61809e1_2
- python=3.9.19=h0755675_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.9=5_cp39
- pytz=2024.1=pyhd8ed1ab_0
- pyzmq=26.2.0=py39h4e4fb57_0
- qhull=2020.2=h434a139_5
- qt-main=5.15.8=hc9dc06e_21
- readline=8.2=h8228510_1
- regex=2024.7.24=py39hcd6043d_0
- rpsbproc=0.5.0=h6a68c12_0
- rsync=3.3.0=he6cb5fe_0
- samtools=1.20=h50ea8bc_1
- scikit-learn=1.5.1=py39hf7b0125_0
- scipy=1.13.1=py39haf93ffa_0
- setuptools=72.2.0=pyhd8ed1ab_0
- sip=6.7.12=py39h3d6467e_0
- six=1.16.0=pyh6c4a22f_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.2=py39hd92a3bb_0
- tar=1.34=hb2e2bae_1
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.13=noxft_h4845f30_101
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.4.1=py39h8cd3c5a_1
- traitlets=5.14.3=pyhd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024a=h8827d51_1
- unicodedata2=15.1.0=py39hd1e30aa_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- wget=1.21.4=hda4d442_0
- wheel=0.44.0=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.42=h4ab18f5_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xxhash=0.8.2=hd590300_0
- xz=5.2.6=h166bdaf_0
- zeromq=4.3.5=h75354e8_4
- zipp=3.20.1=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zstd=1.5.6=ha6fb4c9_0
prefix: /home/Users/rdd4/.conda/envs/mimic