From 1e32d852464c395b52683057b36101f0d8f68a1c Mon Sep 17 00:00:00 2001 From: chase mateusiak Date: Wed, 20 Dec 2023 21:41:06 +0000 Subject: [PATCH] debugging ci --- .../regulatory_data/tests/test_data/rank_response_config.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/yeastregulatorydb/regulatory_data/tests/test_data/rank_response_config.json b/yeastregulatorydb/regulatory_data/tests/test_data/rank_response_config.json index abb7ff0..b79ce71 100644 --- a/yeastregulatorydb/regulatory_data/tests/test_data/rank_response_config.json +++ b/yeastregulatorydb/regulatory_data/tests/test_data/rank_response_config.json @@ -1 +1 @@ -{"binding_data_path": "/home/oguzkhan/code/callingCardsTools/tests/test_data/yeast/Analysis/hap5_exprid_17_yiming_adh1_promoter_sig.csv.gz", "binding_source": "cc_17", "binding_identifier_col": "target_gene_id", "binding_effect_col": "callingcards_enrichment", "binding_pvalue_col": "poisson_pval", "rank_by_effect": false, "expression_data_path": "/home/oguzkhan/code/callingCardsTools/tests/test_data/yeast/Analysis/hap5_15min_mcisaac.csv.gz", "expression_source": "mcisaac_hap5_15", "expression_identifier_col": "gene_id", "expression_effect_col": "log2_shrunken_timecourses", "expression_effect_thres": 0.0, "expression_pvalue_col": null, "expression_pvalue_thres": null, "rank_bin_size": 5, "normalize": false, "output_file": "/tmp/pytest-of-oguzkhan/pytest-0/test_validate_config0/rank_response.csv", "compress": false} \ No newline at end of file +{"binding_data_path": "/home/oguzkhan/code/callingCardsTools/tests/test_data/yeast/Analysis/hap5_exprid_17_yiming_adh1_promoter_sig.csv.gz", "binding_source": "cc_17", "binding_identifier_col": "target_gene_id", "binding_effect_col": "callingcards_enrichment", "binding_pvalue_col": "poisson_pval", "rank_by_effect": false, "expression_data_path": "/home/oguzkhan/code/callingCardsTools/tests/test_data/yeast/Analysis/hap5_15min_mcisaac.csv.gz", "expression_source": "mcisaac_hap5_15", "expression_identifier_col": "gene_id", "expression_effect_col": "log2_shrunken_timecourses", "expression_effect_thres": 0.0, "expression_pvalue_col": null, "expression_pvalue_thres": null, "rank_bin_size": 5, "normalize": false, "output_file": "/tmp/pytest-of-oguzkhan/pytest-0/test_validate_config0/rank_response.csv", "compress": false}