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.travis.yml
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# Netpyne travis testing script
sudo: false
addons:
apt:
packages:
# Requirements for Neuron/NetPyne/OMV
- python-numpy
- python-scipy
- python-matplotlib
- python-tk
- python-sympy
- python-tornado
- python-pandas
- python-tables
language: python
python: 2.7
virtualenv:
system_site_packages: true
install:
- pip install scipy
# Install OMV to facilitate installation of packages below
- pip install git+https://github.com/OpenSourceBrain/osb-model-validation
# Need to pre install NEURON so nrnivmodl can be run targeting mod files in a different directory
- omv install NEURON
# Need to pre install pyNeuroML to test export to NeuroML 2
- omv install pyNeuroML
# Main install for NetPyNE
- python setup.py install
- export NEURON_HOME=/home/travis/neuron/nrn/x86_64/
script:
- cd doc/source/code/
- $NEURON_HOME/bin/nrnivmodl mod
- python tut2.py -nogui
- python tut3.py -nogui
- python tut5.py -nogui
- python tut6.py -nogui
- python tut7.py -nogui
# - python tut_import.py
- cd ../../../examples/HHTut
- python HHTut_run.py -nogui
- cd ../HybridTut
- $NEURON_HOME/bin/nrnivmodl
- python HybridTut_run.py -nogui
- cd ../M1
- $NEURON_HOME/bin/nrnivmodl
- python M1_run.py -nogui
- cd ../M1
- $NEURON_HOME/bin/nrnivmodl
- python M1_run.py -nogui
# - cd ../RL_arm
# - $NEURON_HOME/bin/nrnivmodl
# - python main.py
- cd ../..
# Run all OMV tests...
- omv all -V
notifications:
email: false
#slack: neurosim:pj4DaRn3CrmH6hSRV0zBhfjS
# sudo: true
# addons:
# apt:
# packages:
# # Requirements for Neuron/NetPyne
# - build-essential
# - autoconf
# - automake
# - libtool
# - python-numpy
# - python-scipy
# - python-matplotlib
# language: python
# python: 2.7
# env:
# system_site_packages: true
# # - NEURON_HOME=$TRAVIS_BUILD_DIR/nrn-7.3/x86_64/bin/
# # - PYTHONPATH=$TRAVIS_BUILD_DIR:$PYTHONPATH
# install:
# #- pip install scipy
# - pip install numpy
# - pip install matplotlib
# - wget http://www.neuron.yale.edu/ftp/neuron/versions/v7.3/nrn-7.3.tar.gz
# - tar xzvf nrn-7.3.tar.gz
# - cd nrn-7.3
# - ./configure --prefix `pwd` --without-iv --with-nrnpython
# - make
# - make install
# - cd src/nrnpython
# - sudo python setup.py install
# - cd ../../..
# - ls -alt
# - export NEURON_HOME=$TRAVIS_BUILD_DIR/nrn-7.3/x86_64/bin/
# - export PYTHONPATH=$TRAVIS_BUILD_DIR:/usr/local/lib/python2.7/dist-packages/:/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages
# - echo $PYTHONPATH
# - $NEURON_HOME/nrnivmodl doc/source/code/mod
# - cp examples/HHTut/HHTut.py doc/source/code/
# script:
# - python doc/source/code/tut1.py
# - python doc/source/code/tut2.py
# - python doc/source/code/tut3.py
# - python doc/source/code/tut5.py
# - python doc/source/code/tut6.py
# - python doc/source/code/tut_import.py
# - python examples/HHTut/HHTut_run.py
# - python examples/HybridTut/HybridTut_run.py
# - python examples/M1/M1_run.py
# - python examples/RL_arm/main.py
# notifications:
# email: false
# slack: neurosim:pj4DaRn3CrmH6hSRV0zBhfjS
# Framework for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
# sudo: false
# addons:
# apt:
# packages:
# # Requirements for Neuron/NetPyne
# - build-essential
# - autoconf
# - automake
# - libtool
# - python-numpy
# - python-scipy
# - python-matplotlib
# - python-sympy
# language: python
# python: 2.7
# virtualenv:
# system_site_packages: true
# env:
# - OMV_ENGINE=PyNEURON
# install:
# # Need to pre install NEURON so nrnivmodl can be run targeting mod files in a different directory
# - omv install NEURON
# - export NEURON_HOME=$TRAVIS_BUILD_DIR/neuron/nrn/x86_64/bin/
# - export PATH=$PATH:/home/travis/neuron/nrn/x86_64/bin/
# - export PYTHONPATH=$TRAVIS_BUILD_DIR:/usr/local/lib/python2.7/dist-packages/:/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages
# - $NEURON_HOME/nrnivmodl doc/source/code/mod
# #- /home/travis/neuron/nrn/x86_64/bin/nrnivmodl ../mod.files
# - cd ../..
# script:
# - python doc/source/code/tut2.py
# ## PyNN
# language: python
# python:
# - 2.6
# - 3.3
# - 3.5
# - "2.7_with_system_site_packages"
# sudo: false
# addons:
# apt:
# packages:
# - build-essential
# - autoconf
# - automake
# - libtool
# - libreadline6-dev
# - libncurses5-dev
# - libgsl0-dev
# - python-all-dev
# - python-numpy
# - python-scipy
# - python-sympy
# - openmpi-bin
# - libopenmpi-dev
# install:
# - pip install -r requirements.txt
# - pip install coverage coveralls
# - source ci/install_brian.sh
# - source ci/install_nest.sh
# - source ci/install_neuron.sh
# - pip install .
# script: bash ci/test_script.sh
# after_success:
# - coveralls
# cache:
# directories:
# - $HOME/nest-2.6.0
# - $HOME/nrn-7.3
# - $HOME/build/nest-2.6.0
# - $HOME/build/nrn-7.3
# - $HOME/.cache/pip