CR1.yaml

# An executable must have a name and a location (RELATIVE TO THE ROOT OF THE GIT REPO)
executable:
  name: "ssa"
  location: "StochKit"
# The parameter_prefix is the string that will be placed at the start of all parameters.
parameter_prefix: "--"
# The parameter_suffix is the string that will separate the parameter and the value for value parameters.
parameter_suffix: " "
# File parameters are parameters that require a file name to be specified. Each parameter should be specified
# as a (parameter name, file extension) pair.
required_file_parameters:
  - 
    name: "model"
    extension: "xml"
# Value parameters are parameters that can have a range of values, where some value must be specified if 
# they are included.
required_value_parameters: ["time","realizations"]
optional_value_parameters: ["intervals","bins","species","out-dir","seed","processes"]
# Boolean parameters are parameters with a binary value, whose inclusion/exclusion signify their value
optional_boolean_parameters: ["no-stats","keep-trajectories","keep-histograms","label","force","no-recompile"]