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40 Open 28 Closed
40 Open 28 Closed
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Issues list

How to set the value of sequence identity before running "ensembler build_models" to avoid useless operations?
#94 opened Mar 20, 2021 by ABChh26
Ensembler does not retain disulfide bond records from original PDB files.
#93 opened May 30, 2017 by MehtapIsik
Uniprot has changed search syntax enhancement prio:low
#92 opened May 2, 2017 by steven-albanese
1
Fix travis
#91 opened Jan 14, 2017 by jchodera
Uniprot doesn't always specify a domain
#90 opened Dec 6, 2016 by daveminh
Pin msmbuilder version to 3.3.1 until API can be updated bug
#89 opened Dec 6, 2016 by daveminh
@jchodera
1
A note on reproducibility - changes in Uniprot IDs
#84 opened Jun 28, 2016 by rafwiewiora
3
ensembler cluster appears to not deal ok with re-running on existing directories
#83 opened Jun 24, 2016 by rafwiewiora
1
We can add a link to Ensembler on the Modeller website
#82 opened Jun 5, 2016 by rafwiewiora
2
Fix PDBFixer dependencies
#81 opened Apr 13, 2016 by jchodera
5
Fix broken nosetests
#77 opened Apr 8, 2016 by jchodera
Bug in symlinks creation at gather_templates
#73 opened Apr 7, 2016 by rafwiewiora
Add a manual template?
#72 opened Apr 6, 2016 by rafwiewiora
3
How to set up Ensembler-mpi-multiple GPUs?
#71 opened Apr 6, 2016 by rafwiewiora
13
Link to example dataset doesn't work
#69 opened Apr 2, 2016 by rafwiewiora
7
Confusing Error messages
#67 opened Jan 20, 2016 by steven-albanese
[FR/ENH] Allow user to limit template crystallographic resolution enhancement
#64 opened Dec 2, 2015 by msultan
Skip template loop modeling for templates not missing any loops bug
#63 opened Dec 2, 2015 by jchodera
Add option to specify ionic strength when solvating in explicit solvent
#58 opened Oct 15, 2015 by jchodera
Set PME parameters explicitly when packaging for FAH
#55 opened Sep 3, 2015 by jchodera
@jchodera
Ensembler usage for missing parts in crystal structure
#53 opened Aug 27, 2015 by mihirdate
9
Note that 'cluster' is not optional
#50 opened Aug 24, 2015 by sonyahanson
2
Add computation of MolProbity scores
#46 opened Aug 23, 2015 by jchodera
@danielparton
Is there a way in gather_templates to use an input file for query, like a pre-made list of PDBs?
#42 opened Aug 14, 2015 by sonyahanson
1
Allow user to specify one or more forcefield (ffxml) files during implicit and explicit solvent steps
#40 opened Aug 14, 2015 by jchodera
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