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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "actigraphy"
version = "0.1.0"
description = "A beautiful description."
authors = ["Reinder Vos de Wael <[email protected]>"]
license = "LGPL-2.1"
readme = "README.md"
packages = [{include = "actigraphy", from = "src"}]
[tool.poetry.dependencies]
python = "~3.11"
dash-bootstrap-components = "^1.4.2"
dash-daq = "^0.5.0"
numpy = "^1.26.4"
pandas = "^2.2.0"
plotly = "^5.16.1"
rdata = "^0.10"
pydantic = "^2.6.1"
dash = "^2.15.0"
sqlalchemy = "^2.0.26"
pydantic-settings = "^2.1.0"
polars = "^0.20.7"
pyarrow = "^15.0.0"
[tool.poetry.group.dev.dependencies]
pytest = "^8.0.2"
mypy = "^1.8.0"
pre-commit = "^3.6.2"
pytest-cov = "^4.1.0"
ruff = "^0.6"
pytest-mock = "^3.12.0"
vulture = "^2.11"
[tool.poetry.group.docs.dependencies]
pdoc = "^14.4.0"
[tool.poetry.extras]
docs = ["pdoc"]
[tool.poetry.scripts]
actigraphy = "actigraphy.__main__:main_entrypoint"
actigraphy_preprocess = 'actigraphy.__main__:preprocess_entrypoint'
[build-system]
requires = ["poetry-core>=1.2.0"]
build-backend = "poetry.core.masonry.api"
[tool.pytest.ini_options]
pythonpath = [
"src"
]
[tool.mypy]
ignore_missing_imports = true
strict = true
plugins =[
"pydantic.mypy"
]
[tool.ruff]
exclude = [
".bzr",
".direnv",
".eggs",
".git",
".git-rewrite",
".hg",
".mypy_cache",
".nox",
".pants.d",
".pytype",
".ruff_cache",
".svn",
".tox",
".venv",
"__pypackages__",
"_build",
"buck-out",
"build",
"dist",
"node_modules",
"venv",
]
line-length = 88
indent-width = 4
src=["src"]
target-version = "py311"
[tool.ruff.lint]
select = ["ALL"]
ignore = [
"ANN101", # Self should never be type annotated.
"ANN102", # cls should never be type annotated.
"PTH", # Dash cannot store Path objects.
"DTZ", # Timezones handling is not consistent.
]
fixable = ["ALL"]
unfixable = []
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"
[tool.ruff.lint.pydocstyle]
convention = "google"
[tool.ruff.lint.per-file-ignores]
"tests/**/*.py" = [
"S101", # Allow assets
"ARG", # Unused arguments are common in tests (fixtures).
"FBT", #Allow positional booleans
"SLF001", # Allow private member access.
"INP001", # No need for namespace packages in tests.
]