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pheno.txt
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pheno.txt
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sampleNames Cellular_type Cellular_type_simplified New diagnosis chondroid.group squamous.group spindle.group chondroid.v.squamous squamous.v.spindle spindle.v.chondroid TNBCtype_subtype TNBCtype_corr TNBCtype_p.value PAM50_affy PAM50_affy_corr PAM50_illumina PAM50_illumina_Corr Claudinlow Claudinlow_corrMETA30 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid UNS NA NA Basal 0.418 Basal 0.394 ClaudinLow 0.228META31 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid BL1 0.331 <0.001 Basal 0.627 Basal 0.6 ClaudinLow 0.196META32 Spindle Spindle Carcinoma with heterologous elements non-chondroid non-squamous Spindle Spindle Spindle IM 0.212 0.001 Basal 0.501 Basal 0.45 ClaudinLow 0.598META36 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid M 0.468 <0.001 Normal 0.642 Normal 0.66 ClaudinLow 0.183META37 Squamous Squamous Carcinoma with squamous features non-chondroid Squamous non-spindle Squamous Squamous IM 0.452 <0.001 Normal 0.421 Normal 0.464 ClaudinLow 0.202META39 Spindle Spindle Carcinoma with heterologous elements non-chondroid non-squamous Spindle Spindle Spindle M 0.197 <0.001 Basal 0.631 Basal 0.579 ClaudinLow 0.551META40 Spindle/Squamous mix Squamous Spindle cell carcinoma non-chondroid Squamous non-spindle Squamous Squamous UNS NA NA Basal 0.717 Basal 0.718 ClaudinLow 0.581META41 Squamous Squamous Carcinoma with heterologous elements non-chondroid Squamous non-spindle Squamous Squamous BL2 0.286 0.001 Basal 0.714 Basal 0.726 ClaudinLow 0.308META42 Epithelioid Squamous Carcinoma with squamous features non-chondroid Squamous non-spindle Squamous Squamous M 0.272 <0.001 Basal 0.556 Basal 0.562 other 0.106META47 Spindle Spindle Spindle cell carcinoma non-chondroid non-squamous Spindle Spindle Spindle IM 0.551 <0.001 NA 0.0624 NA 0.0883 ClaudinLow 0.755META49 Spindle Spindle Spindle cell carcinoma non-chondroid non-squamous Spindle Spindle Spindle BL2 0.494 <0.001 Basal 0.314 Basal 0.322 ClaudinLow 0.697META52 Chondroid/spindle Chondroid Spindle cell carcinoma with areas of chondroid differentiation (Carcinoma with heterologous elements) Chondroid non-squamous non-spindle Chondroid Chondroid BL1 0.351 <0.001 Basal 0.703 Basal 0.692 ClaudinLow 0.328META53 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid BL1 0.13 0.04 Normal 0.332 Normal 0.263 NA 0.053META55 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid M 0.442 <0.001 Normal 0.458 Normal 0.493 ClaudinLow 0.155META59 Spindle Spindle Carcinoma with heterologous elements non-chondroid non-squamous Spindle Spindle Spindle IM 0.223 0.002 Basal 0.624 Basal 0.573 ClaudinLow 0.643META62 Squamous Squamous Carcinoma with heterologous elements non-chondroid Squamous non-spindle Squamous Squamous IM 0.543 <0.001 Basal 0.713 Basal 0.7 ClaudinLow 0.454META64 Chondroid Chondroid Carcinoma with heterologous elements - Matrix producing Chondroid non-squamous non-spindle Chondroid Chondroid BL1 0.502 <0.001 Basal 0.515 Basal 0.491 ClaudinLow 0.209