From 73488b6db92a2c9b1c1c1056006a5a07a127e71f Mon Sep 17 00:00:00 2001 From: cfarkas Date: Sat, 13 Mar 2021 15:10:48 -0600 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c56b7bb..73eb2c7 100644 --- a/README.md +++ b/README.md @@ -165,5 +165,5 @@ SnpEff_processing -v SnpEff-Nov-30-2020.GISAID.vcf ``` In each folder, variants_per_protein subfolder contain variants per protein. Files ending in ".SnpEff" contains parsed variants per consequence and ".counts" contains associated counts, respectively. Also, the script computed aminoacid changes (see SnpEff.AAchanges files). We suggest user-provided vcf files should be processed in a likewise manner, placing the vcf file in a specific folder and executing steps 3) and 4). -## More than 100000 GISAID sequences to analyze? +## V) More than 100000 GISAID sequences to analyze? please visit our wiki page here: https://github.com/cfarkas/SARS-CoV-2-freebayes/wiki#i-two-step-full-pipeline