From d1032e1b1efb26af8940dcfc027990498d40131c Mon Sep 17 00:00:00 2001
From: Tim Rudge <timrudge@gmail.com>
Date: Thu, 21 Jun 2018 13:58:02 -0400
Subject: [PATCH] Add dependencies for pdfgeneration and plotting. Clean up use
 of bashrc in installer.

---
 Installers/InstallCellModellerLinux64_public.sh  |  6 ++++--
 Installers/InstallCellModellerOSX_public.command |  6 ++++--
 setup.py                                         | 12 ++++++------
 3 files changed, 14 insertions(+), 10 deletions(-)

diff --git a/Installers/InstallCellModellerLinux64_public.sh b/Installers/InstallCellModellerLinux64_public.sh
index b6d1ec70..cae1c6ef 100755
--- a/Installers/InstallCellModellerLinux64_public.sh
+++ b/Installers/InstallCellModellerLinux64_public.sh
@@ -21,7 +21,6 @@ echo
 echo 1. Installing CellModeller and dependencies via Anaconda...
 echo ------------------------------------------------------------
 echo
-source ~/.bash_profile
 
 command -v conda >/dev/null 2>&1 || { echo "You must install Anaconda before running this installer..." >&2; exit 1; }
 
@@ -69,7 +68,10 @@ echo -------------------------------------------------------
 echo
 # Put an environment variable in bash_profile to tell CellModeller where things are
 # Also append our bin dir to PATH
+touch $HOME/.bashrc
+touch $HOME/.bash_profile
 echo export CMPATH=$CMDIR >> $HOME/.bash_profile
 echo export "PATH=$BINDIR:$PATH" >> $HOME/.bash_profile
-source ~/.bash_profile
+echo export CMPATH=$CMDIR >> $HOME/.bashrc
+echo export "PATH=$BINDIR:$PATH" >> $HOME/.bashrc
 
diff --git a/Installers/InstallCellModellerOSX_public.command b/Installers/InstallCellModellerOSX_public.command
index b6d1ec70..cae1c6ef 100755
--- a/Installers/InstallCellModellerOSX_public.command
+++ b/Installers/InstallCellModellerOSX_public.command
@@ -21,7 +21,6 @@ echo
 echo 1. Installing CellModeller and dependencies via Anaconda...
 echo ------------------------------------------------------------
 echo
-source ~/.bash_profile
 
 command -v conda >/dev/null 2>&1 || { echo "You must install Anaconda before running this installer..." >&2; exit 1; }
 
@@ -69,7 +68,10 @@ echo -------------------------------------------------------
 echo
 # Put an environment variable in bash_profile to tell CellModeller where things are
 # Also append our bin dir to PATH
+touch $HOME/.bashrc
+touch $HOME/.bash_profile
 echo export CMPATH=$CMDIR >> $HOME/.bash_profile
 echo export "PATH=$BINDIR:$PATH" >> $HOME/.bash_profile
-source ~/.bash_profile
+echo export CMPATH=$CMDIR >> $HOME/.bashrc
+echo export "PATH=$BINDIR:$PATH" >> $HOME/.bashrc
 
diff --git a/setup.py b/setup.py
index e14bac4a..10b38e61 100644
--- a/setup.py
+++ b/setup.py
@@ -16,14 +16,14 @@
     with open(version_py, 'r') as fh:
         version_git = open(version_py).read().strip().split('=')[-1].replace('"','')
 
-version_msg = "# Do not edit this file, pipeline versioning is governed by git tags"
-with open(version_py, 'w') as fh:
-    fh.write(version_msg + os.linesep + "__version__='" + version_git + "'")
+#version_msg = "# Do not edit this file, pipeline versioning is governed by git tags"
+#with open(version_py, 'w') as fh:
+#    fh.write(version_msg + os.linesep + "__version__='" + version_git + "'")
 
 
 setup(name='CellModeller',
-    install_requires=['numpy', 'scipy', 'pyopengl', 'pyopencl==2014.1'],
-    setup_requires=['numpy', 'scipy', 'pyopengl', 'pyopencl==2014.1'],
+    install_requires=['numpy', 'scipy', 'pyopengl', 'pyopencl==2014.1', 'reportlab', 'matplotlib'],
+    setup_requires=['numpy', 'scipy', 'pyopengl', 'pyopencl==2014.1', 'reportlab', 'matplotlib'],
     #setup_requires=['numpy', 'pyopengl', 'mako', 'pyopencl'],
     packages=['CellModeller',
                 'CellModeller.Biophysics',
@@ -34,5 +34,5 @@
                 'CellModeller.Signalling',
                 'CellModeller.GUI'],
      package_data={'':['*.cl','*.ui']},
-     version=version_git
+     version=str(version_git)
 )