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test.sh
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test.sh
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#! /bin/bash
# -*- coding: utf-8 -*-
export PATH="$HOME/miniconda/bin:$PATH"
FAILURE=0
# Disable py.test cacheprovider because it requires r/w access to the test directory
#### Pre-tests
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests
TEST_SCRIPTS='test_fixtures.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-report= --cov-config ../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_buddy_resources/
#### Buddy Resources
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_buddy_resources
TEST_SCRIPTS='test_buddy_resources.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_buddysuite/
#### BuddySuite
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_buddysuite
TEST_SCRIPTS='test_buddysuite.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_alignbuddy/
#### AlignBuddy
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_alignbuddy
TEST_SCRIPTS='test_alb_class_and_helpers.py '
TEST_SCRIPTS+='test_alb_api.py '
TEST_SCRIPTS+='test_alb_ui.py '
TEST_SCRIPTS+='test_alb_3rd_party.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_databasebuddy/
#### DatabaseBuddy
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_databasebuddy
TEST_SCRIPTS='test_db_class_and_helpers.py '
TEST_SCRIPTS+='test_db_clients.py '
TEST_SCRIPTS+='test_db_ui.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_seqbuddy/
#### SeqBuddy
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_seqbuddy
TEST_SCRIPTS='test_sb_class_and_helpers.py '
TEST_SCRIPTS+='test_sb_api.py '
TEST_SCRIPTS+='test_sb_ui.py '
TEST_SCRIPTS+='test_sb_3rd_party.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_phylobuddy/
#### PhyloBuddy
cd /home/travis/build/biologyguy/BuddySuite/buddysuite/tests/test_phylobuddy
TEST_SCRIPTS='test_pb_class_and_helpers.py '
TEST_SCRIPTS+='test_pb_api.py '
TEST_SCRIPTS+='test_pb_ui.py '
TEST_SCRIPTS+='test_pb_3rd_party.py '
py.test ${TEST_SCRIPTS} --cache-clear -p no:cacheprovider --cov --cov-append --cov-report= --cov-config ../../.coveragerc --durations=10
if [ $? -ne 0 ]
then
FAILURE=1
fi
mv .coverage /home/travis/build/biologyguy/BuddySuite/
#### Run Coveralls
cd /home/travis/build/biologyguy/BuddySuite
coveralls
exit ${FAILURE}