diff --git a/tests/test_long_deletions.py b/tests/test_long_deletions.py
index 2793b99..0eb9119 100644
--- a/tests/test_long_deletions.py
+++ b/tests/test_long_deletions.py
@@ -16,8 +16,8 @@ def test_long_deletions():
 
     # Input data
     bamfile = "test_aln.cram"
-    snvsfile = "debug/snv/SNV.tsv"
-    outfile = "debug/snv/SNVs_0.010000.tsv"
+    snvsfile = "work/snv/SNV.tsv"
+    outfile = "work/snv/SNVs_0.010000.tsv"
 
     helper_long_deletions.main(bamfile=bamfile, snvsfile=snvsfile, outfile=outfile)
 
diff --git a/tests/test_shotgun_e2e.py b/tests/test_shotgun_e2e.py
index 4928d1f..b80c536 100644
--- a/tests/test_shotgun_e2e.py
+++ b/tests/test_shotgun_e2e.py
@@ -35,7 +35,7 @@ def test_e2e_shorah():
 
     assert filecmp.cmp(
         "./data_1/test.csv",
-        "./data_1/snv/SNVs_0.010000_final.csv",
+        "./data_1/work/snv/SNVs_0.010000_final.csv",
         shallow=False
     )