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When running updates via the CLI, tons and tons of disease normalization failure lines get printed to stdout:
Failed to normalize disease term: Wrist Fractures
Failed to normalize disease term: wrist fracture
Failed to normalize disease term: mesh:D007718
Failed to normalize disease term: EFO:0009507
Failed to normalize disease term: Knee Injuries
Failed to normalize disease term: knee injury
13%|████▎ | 324539/2431025 [04:07<25:45, 1363.31it/s]Failed to normalize disease term: mesh:D058533
13%|████▎ | 326418/2431025 [04:09<23:59, 1462.28it/s]Failed to normalize disease term: mesh:D011030
Failed to normalize disease term: HP:0002107
Failed to normalize disease term: mesh:D016657
14%|████▎ | 328544/2431025 [04:10<24:49, 1411.52it/s]Failed to normalize disease term: mesh:D000077299
Failed to normalize disease term: mesh:D018784
Failed to normalize disease term: EFO:1001753
Failed to normalize disease term: Abdominal Abscess
Failed to normalize disease term: mesh:D017192
This probably has to do with the way click intersects with the logging module. We should definitely be logging these warnings but shouldn't be printing them.
The text was updated successfully, but these errors were encountered:
When running updates via the CLI, tons and tons of disease normalization failure lines get printed to stdout:
This probably has to do with the way
click
intersects with the logging module. We should definitely be logging these warnings but shouldn't be printing them.The text was updated successfully, but these errors were encountered: