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publication-authors-and-journal.html
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publication-authors-and-journal.html
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<link rel="import" href="nextprot-elements-shared-styles.html">
<!--
`publication-authors-and-journal`
Publication authors with journal demo
@demo demo/publication-authors-and-journal-demo.html
-->
<dom-module id="publication-authors-and-journal">
<template>
<style include="nextprot-elements-shared-styles">
:host {
display: block;
}
.authors a {
color: #5496cf;
}
.np-grey-text {
color: #666;
}
.journal {
margin-bottom: 2px;
}
</style>
<template is="dom-if" if="[[publication]]">
<!-- Detailed view -->
<template is="dom-if" if="[[!summary]]">
<span class="authors">
<template is="dom-if" if="[[authorUrls]]">
<!-- beyond max number of authors-->
<template is="dom-if" if="[[_isAuthorUrlListBeyondMax(authorUrls)]]">
<template is="dom-if" if="[[_isAuthorUrlListCollapsed(accordionText)]]">
<span inner-h-t-m-l="[[_collapseAuthorUrlList(authorUrls)]]"></span>
</template>
<template is="dom-if" if="[[!_isAuthorUrlListCollapsed(accordionText)]]">
<span inner-h-t-m-l="[[_expandAuthorUrlListWithoutLast(authorUrls)]]"></span>
</template>
<span><a style="color:grey;" on-click="_toggleDescription">[[[accordionText]]]</a>,</span>
<span inner-h-t-m-l="[[lastAuthorUrl]]"></span>
</template>
<!-- acceptable number of authors -->
<template is="dom-if" if="[[!_isAuthorUrlListBeyondMax(authorUrls)]]">
<span inner-h-t-m-l="[[_concatAuthorUrlList(authorUrls)]]"></span>
</template>
</template>
</span>
<div class="journal">
<!-- Article -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'ARTICLE')]]">
<template is="dom-if" if="[[publication.journalResourceLocator.abbrev]]">
[[publication.journalResourceLocator.abbrev]]
</template>
<template is="dom-if" if="[[!publication.journalResourceLocator.abbrev]]">
[[publication.journalResourceLocator.name]]
</template>
<template is="dom-if" if="[[publication.volume]]">
<strong>[[publication.volume]],</strong>
</template>
<template is="dom-if" if="[[publication.firstPage]]">
[[pages]]
</template>
<template is="dom-if" if="[[publication.publicationYear]]">
([[publication.publicationYear]])
</template>
<template is="dom-repeat" items="[[publication.dbXrefs]]" as="xref">
[[[_formatXrefLabel(xref.databaseName)]]:
<a href="[[xref.resolvedUrl]]" class="ext-link" target='_blank'>[[xref.accession]]</a>]
</template>
</template>
<!-- Submission -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'SUBMISSION')]]">
[[publication.submission]]
([[publication.textDate]])
</template>
<!-- Patent -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'PATENT')]]">
Patent number [[publication.dbXrefs.0.accession]] ([[publication.textDate]])
<template is="dom-repeat" items="[[publication.dbXrefs]]" as="xref">
[Full text: <a href="[[xref.resolvedUrl]]" class="ext-link" target='_blank'>[[xref.accession]]</a>]
</template>
</template>
<!-- Book -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'BOOK')]]">
<eds-and-in locator="[[publication.publicationResourceLocator]]"
first-page="[[publication.firstPage]]" last-page="[[publication.lastPage]]"
publication-year="[[publication.publicationYear]]"></eds-and-in>
</template>
<!-- Thesis -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'THESIS')]]">
Thesis ([[publication.textDate]]), [[publication.publicationResourceLocator.institute]], [[publication.publicationResourceLocator.country]]</span>
</template>
<!-- Unpublished observation -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'UNPUBLISHED_OBSERVATION')]]">
Unpublished observations ([[publication.textDate]])</span>
</template>
</div>
</template>
<!-- Summary view -->
<template is="dom-if" if="[[summary]]">
<!-- First author et al. -->
<span inner-h-t-m-l="[[_formatFirstAuthorAndAl(publication.authors)]]"></span>
<template is="dom-if" if="[[!journalYearOnly]]">
<!-- Submission -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'SUBMISSION')]]">
<span class="np-grey-text">[[publication.submission]] ([[publication.textDate]])</span>
</template>
<!-- Patent -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'PATENT')]]">
<span class="np-grey-text">Patent number [[publication.dbXrefs.0.accession]] ([[publication.textDate]])</span>
</template>
<!-- Article -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'ARTICLE')]]">
<template is="dom-if" if="[[publication.journalResourceLocator.medAbbrev]]">
[[publication.journalResourceLocator.medAbbrev]]
</template>
<template is="dom-if" if="[[!publication.journalResourceLocator.medAbbrev]]">
[[publication.journalResourceLocator.name]]
</template>
<template is="dom-if" if="[[publication.volume]]"><strong>[[publication.volume]],</strong></template>
<template is="dom-if" if="[[publication.firstPage]]">[[pages]]</template>
<template is="dom-if" if="[[publication.publicationYear]]">([[publication.publicationYear]])</template>
</template>
<!-- Book -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'BOOK')]]">
<eds-and-in locator="[[publication.publicationResourceLocator]]"
first-page="[[publication.firstPage]]" last-page="[[publication.lastPage]]"
publication-year="[[publication.publicationYear]]" summary></eds-and-in>
</template>
<!-- Thesis -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'THESIS')]]">
<span class="np-grey-text">Thesis ([[publication.textDate]]), [[publication.publicationResourceLocator.institute]], [[publication.publicationResourceLocator.country]]</span>
</template>
<!-- Unpublished observation -->
<template is="dom-if" if="[[_isType(publication.publicationType, 'UNPUBLISHED_OBSERVATION')]]">
<span class="np-grey-text">Unpublished observations ([[publication.textDate]])</span>
</template>
</template>
</template>
</template>
</template>
<script>
Polymer({
is: 'publication-authors-and-journal',
properties: {
publication: {
type: Object,
observer: '_formatPublicationData'
},
journalYearOnly: {
type: Boolean,
value: false
},
authorUrls: {
type: Array,
value: []
},
summary: {
type: Boolean,
value: false
},
authorsMax: {
type: Number,
value: 20
},
accordionText: {
type: String,
value: "more"
}
},
_formatPublicationData: function() {
// authors
if (this.publication){
this.authorUrls = this._formatAuthorsAsUrls(this.publication.authors);
if (this.publication.authors.length > 0) {
this.lastAuthorUrl = this.authorUrls[this.publication.authors.length - 1];
}
// pages
if (this.publication.firstPage) {
var firstPage = this.publication.firstPage;
var lastPage = firstPage;
if (this.publication.lastPage) {
lastPage = this.publication.lastPage;
}
if (firstPage === lastPage) {
this.pages = firstPage;
}
else {
this.pages = firstPage + "-" + lastPage;
}
}
}
},
_formatFirstAuthorAndAl: function(authors) {
var firstAuthorAndAl = "";
if (authors.length > 0) {
firstAuthorAndAl = authors[0].lastName + " " + this._formatInitials(authors[0].initials);
if (authors.length === 2) {
firstAuthorAndAl += " and "
+ authors[1].lastName + " " + this._formatInitials(authors[1].initials);
}
else if (authors.length > 2) {
firstAuthorAndAl += " <i>et al.</i>";
}
if (this.journalYearOnly) {
firstAuthorAndAl += " (" + this.publication.publicationYear + ")";
}
else {
firstAuthorAndAl += ", ";
}
}
return firstAuthorAndAl;
},
_formatAuthorsAsUrls: function (authors) {
var len = authors.length;
var urls = [];
for (var i=0; i<len; ++i) {
var author = authors[i];
var href = "/publications/search?query=author:"+author.lastName+ " " + author.foreName;
urls.push("<a href=\""+href +"\">" + author.lastName+ " " + this._formatInitials(author.initials)+ "</a>");
}
return urls;
},
_formatInitials: function (name) {
return (name.replace(new RegExp(/\./, 'g'), "").split('').join('.') + '.').replace("-.", "");
},
_checkIfLast: function (array, index) {
return (array.length - 1 === index);
},
_formatXrefLabel: function (name) {
return name.replace("DOI", "Full text").replace("WEBINFO", "View web page");
},
_isType: function (type, test) {
return type === test;
},
_collapseAuthorUrlList: function (authorUrlList) {
if (authorUrlList.length > this.authorsMax) {
return this._concatAuthorUrlList(authorUrlList.slice(0, this.authorsMax-1))+ ",";
}
return this._concatAuthorUrlList(authorUrlList)
},
_expandAuthorUrlListWithoutLast: function (authorUrlList) {
return this._concatAuthorUrlList(authorUrlList.slice(0, authorUrlList.length-1))+ ",";
},
_concatAuthorUrlList: function (authorUrlList) {
var urls = "";
var len = authorUrlList.length;
for (var i = 0; i < len; ++i) {
urls += authorUrlList[i];
if (i < len - 1) {
urls += ", ";
}
}
return urls;
},
_isAuthorUrlListBeyondMax: function (array) {
return array.length > this.authorsMax;
},
_isAuthorUrlListCollapsed: function (linkName) {
return linkName === "more";
},
_toggleDescription: function () {
if (this.accordionText === "more") {
this.accordionText = "less";
}
else {
this.accordionText = "more";
}
}
});
</script>
</dom-module>
<dom-module id="eds-and-in">
<template>
<style include="nextprot-elements-shared-styles">
.inline-grey {
color: #666;
display: inline-block;
}
</style>
<template is="dom-if" if="[[locator]]">
<div class$="[[divClass]]">
<template is="dom-if" if="[[locator.editors]]">
<!-- TODO: add a comma before Eds in summary mode-->
(Eds)
<template is="dom-repeat" items="[[locator.editors]]" as="editor">
<template is="dom-if" if="[[!_checkIfLast(locator.editors,index)]]">
[[editor.lastName]] [[_formatInitials(editor.initials)]],
</template>
<template is="dom-if" if="[[_checkIfLast(locator.editors,index)]]">
[[editor.lastName]] [[_formatInitials(editor.initials)]]
</template>
</template>
</template>
</div>
<template is="dom-if" if="[[summary]]">
<br>
</template>
<div class$="[[divClass]]">
<template is="dom-if" if="[[locator.name]]">(In) [[locator.name]],</template>
<template is="dom-if" if="[[firstPage]]">pp.[[firstPage]]-[[lastPage]],</template>
<template is="dom-if" if="[[locator.publisher]]">[[locator.publisher]],</template>
<template is="dom-if" if="[[locator.city]]">[[locator.city]]</template>
<template is="dom-if" if="[[publicationYear]]">([[publicationYear]])</template>
</div>
</template>
</template>
<script>
Polymer({
is: 'eds-and-in',
properties: {
summary: {
type: Boolean,
value: false
},
editors: {
type: Object
},
locator: {
type: Object
},
firstPage: {
type: String
},
lastPage: {
type: String
},
publicationYear: {
type: String
},
divClass: {
type: String
}
},
attached: function() {
this.divClass = (this.summary) ? "inline-grey" : "";
},
_formatInitials: function (name) {
return (name.replace(new RegExp(/\./, 'g'), "").split('').join('.') + '.').replace("-.", "");
},
_checkIfLast: function (array, index) {
return (array.length - 1 === index);
}
});
</script>
</dom-module>