From 388512deee369648456061b7fb945e1971b13baf Mon Sep 17 00:00:00 2001
From: John Elizarraras <13990267+iblacksand@users.noreply.github.com>
Date: Wed, 6 Mar 2024 20:44:29 -0800
Subject: [PATCH 1/2] Update idMappingMetabolites.R to address warning

---
 R/idMappingMetabolites.R | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/R/idMappingMetabolites.R b/R/idMappingMetabolites.R
index 31bd037..134f902 100644
--- a/R/idMappingMetabolites.R
+++ b/R/idMappingMetabolites.R
@@ -163,14 +163,14 @@ add_prefix <- function(x, sourceIdType) {
   uppers <- c("LIPIDMAPS", "CAS")
   if (toupper(sourceIdType) %in% uppers) {
     return(unlist(sapply(x, function(y) {
-      if (grepl(":", y, FIXED = TRUE)) {
+      if (grepl(":", y)) {
         return(y)
       }
       return(paste0(toupper(sourceIdType), ":", toupper(y)))
     })))
   } else {
     return(unlist(sapply(x, function(y) {
-      if (grepl(":", y, fixed = TRUE) && sourceIdType != "swisslipids") {
+      if (grepl(":", y) && sourceIdType != "swisslipids") {
         return(y)
       }
       return(paste0(sourceIdType, ":", y))

From acd660af5b047ed9d0addc40cdf4141976922909 Mon Sep 17 00:00:00 2001
From: John Elizarraras <13990267+iblacksand@users.noreply.github.com>
Date: Wed, 6 Mar 2024 20:46:47 -0800
Subject: [PATCH 2/2] Update README.md

---
 README.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index 225e1d5..c9681d4 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,6 @@
 # WebGestaltR
 
-[![R-CMD-check](https://github.com/iblacksand/WebGestaltR/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/iblacksand/WebGestaltR/actions/workflows/check-standard.yaml)
+[![R-CMD-check](https://github.com/bzhanglab/WebGestaltR/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/bzhanglab/WebGestaltR/actions/workflows/check-standard.yaml)
 
 > [!IMPORTANT]
 > The new version of WebGestaltR requires Rust, which must be installed on your device prior to installing or updating the package from CRAN. See the installation section for more information.
@@ -28,14 +28,14 @@ After installing Rust, you can install WebGestaltR by running the following comm
 
 ```R
 # install.packages("devtools") # run if devtools not already installed
-devtools::install_github("iblacksand/WebGestaltR")
+devtools::install_github("bzhanglab/WebGestaltR")
 ```
 
-During installation, the Rust compiler will be called to build the computation library used by WebGestaltR. If you run into problems with installation of the new version, please [open a new issue](https://github.com/iblacksand/WebGestaltR/issues/new/choose).
+During installation, the Rust compiler will be called to build the computation library used by WebGestaltR. If you run into problems with installation of the new version, please [open a new issue](https://github.com/bzhanglab/WebGestaltR/issues/new/choose).
 
 ## Changes
 
 > [!NOTE]
-> Besides the change in installation, there should be no difference in how the R package performs for existing use-cases. If you experience any difference in results that are not due to the data-update, that is considered a bug. [Please report the changes you experience in a new issue](https://github.com/iblacksand/WebGestaltR/issues/new/choose).
+> Besides the change in installation, there should be no difference in how the R package performs for existing use-cases. If you experience any difference in results that are not due to the data-update, that is considered a bug. [Please report the changes you experience in a new issue](https://github.com/bzhanglab/WebGestaltR/issues/new/choose).
 
 WebGestaltR's core was re-written in Rust, which dramatically increased performance, with up to 15x the speed of previous versions. The new version also supports metabolomics, with support for 15 different ID types.