The table below lists old Oscar modules and their corresponding LMOD modules.
If a cell
- is blank, that module will be installed later
- says "(system RPM)", that software is installed on the nodes. Users don't need to load this module.
- says "N/A", that module will NOT be installed
- lists one or more modules , users can load a listed module using the command
module load <name>
| Old Oscar Module | LMOD Module |
|---|---|
| abaqus | abaqus/2021.1 |
| abinit | abinit-mpi/9.8.3 |
| admixture | admixture/1.3.0 |
| afni | afni/23.3.07s |
| ambertools | |
| anaconda | miniconda3/22.11.1 |
| angsd | angsd/0.935 |
| ants | ants/2.4.3 |
| apache-ant | ant/1.10.13 |
| argweaver | N/A - Users install in their python/conda environments |
| aria2 | aria2/1.36.0 |
| ase | N/A - Users install in their python/conda environments |
| aspera | |
| assura | |
| atlas | openblas/0.3.23 |
| atom | atom/1.19.3 |
| awscli | awscli/1.27.84 |
| bamtools | bamtools/2.5.2 |
| basilisk | basilisk/2023.11.11s |
| bazel | bazel/6.1.1 |
| bbmap | bbmap/39.01 |
| bbtools | bbmap/39.01 |
| bcftools | bcftools/1.16 |
| bcl2fastq | bcl2fastq2/2.20.0.422 |
| beagle | beagle/5.4 |
| bedGraphToBigWig | |
| bedops | bedops/2.4.40 |
| bedtools | bedtools2/2.31.0 |
| binutils | (system RPM) |
| biopython | N/A - User install in their python/conda environments |
| bismark | bismark/0.23.0 |
| blas | netlib-lapack/3.11.0 |
| blast | blast-plus/2.2.30 |
| blat | blat/37 |
| blender | blender/4.0.0 |
| boost |
|
| bowtie | bowtie/1.3.1 |
| bowtie2 | bowtie2/2.4.2 |
| brotli | brotli/1.0.9 |
| busco | N/A - Users install in their python/conda environments |
| bwa | bwa/0.7.17 |
| bxh_xcede_tools | |
| bzip2 | (system RPM) |
| cadence | cadence/IC06.18.090 |
| caffe | |
| cantera | N/A - deprecated |
| cartopy | N/A - Users install in their python/conda environments |
| casa | casa/6.6.0-20-py3.8.el7 |
| cave-utils | N/A |
| cdhit | cdhit/4.8.1 |
| cdo | cdo-mpi/2.1.1 |
| cellranger |
|
| cesm | N/A |
| cfitsio | cfitsio/4.2.0 |
| cgal | cgal/5.4.1 |
| CharMM | |
| chrome | chrome/119.0.6045.159s |
| circlator | N/A - User install in their python/conda environments |
| clang | llvm/16.0.2 |
| CloudCompare | |
| clustal_omega | clustal-omega/1.2.4 |
| cmake | cmake/3.26.3 |
| colordiff | olordiff/1.0.21 |
| comsol |
|
| conn | conn/22a |
| connectome_workbench | connectome-workbench/1.5.0 |
| cp2k | |
| cppunit | [email protected] |
| crossrate | |
| cuda | cuda/12.1.1 |
| cudnn | cudnn/8.7.0.84-11.8 |
| cufflinks | cufflinks/2.2.1 |
| curl | (system RPM) |
| cutadapt | N/A - User install in their python/conda environments |
| dada2 | N/A - User install in their python/conda environments |
| datamash | datamash/1.8 |
| dcm2bids | N/A - User install in their python/conda environments |
| dcm2niix | dcm2niix/1.0.20220720 |
| dedalus | |
| deeparg | N/A - User install in their python/conda environments |
| deeplabcut | N/A - User install in their python/conda environments |
| deeptools | N/A - User install in their python/conda environments |
| deeptoolsintervals | N/A - User install in their python/conda environments |
| diamond | diamond/2.0.15 |
| dicombrowser | dicombrowser/20181217 |
| dlib | dlib/19.22 |
| dmtcp | dmtcp/3.0.0 |
| dos2unix | dos2unix/7.4.2 |
| dotnet | dotnet/8.0.100 |
| dropest | dropest/0.8.6 |
| ds9 | ds/9.8.5s |
| dsi | dsi-studio/chen-2023-sif |
| dtitk | dtitk/2.3.1s |
| eigen | eigen/3.4.0 |
| eigensoft | eigensoft/7.2.1 |
| elbencho | N/A |
| emacs | (system RPM) |
| emboss | |
| engineering | |
| fastme | fastme/2.1.5.1 |
| fastq_screen | |
| fastqc | fastqc/0.11.9 |
| fasttree | fasttree/2.1.11 |
| fastx-toolkit | fastx-toolkit/0.0.14 |
| ferret | ferret/7.6.0 |
| ffmpeg | ffmpeg/6.0 |
| fftw | fftw/3.3.10 |
| fiji | fiji/20231107-1617 |
| fileZilla | filezilla/3.49.1 |
| firefox | firefox-102.9.0 |
| flashpca | flashpca/2.0 |
| freebayes | freebayes/1.3.6 |
| freeglut | freeglut/3.2.2 |
| freesurfer | freesurfer/7.3.2 |
| freetype | freetype/2.11.1 |
| fsl | fsl/6.0.7.7s |
| fv | fv/5.5.2 |
| gatk | gatk/4.3.0.0 |
| gaussian | gaussian/09_v1 |
| gaussview | gaussview/v05 |
| gcc | (system RPM) |
| gdal | gdal/3.7.0 |
| gdb | (system RPM) |
| geos | geos/3.11.2 |
| ghostscript | ghostscript/10.0.0 |
| gimp | gimp/2.10.32 |
| git | (system RPM) |
| gitlfs | git-lfs/3.3.0 |
| glew | glew/2.2.0 |
| glm | glm/0.9.9.8 |
| glmnet | N/A - User install in their python/conda environments |
| global_arrays | globalarrays-mpi/5.8. |
| globus | N/A - User install in their python/conda environments |
| gmp | gmp/6.2.1 |
| gnuplot | gnuplot/5.4.3 |
| golang | go/1.20.3 |
| gpaw | |
| grace | grace/5.1.25 |
| graphviz | graphviz/8.0.1 |
| gromacs |
|
| gsl | gsl/2.7.1 |
| gsutil | google-cloud-cli/456.0.0 |
| guppy |
|
| gurobi | gurobi/10.0.1 |
| h5py | N/A - User install in their python/conda environments |
| haplostrips | |
| hdf5 | hdf5/1.14.1-2 |
| hdfview |
|
| hisat2 | hisat2/2.2.1 |
| hmmer | hmmer-mpi/3.3.2 |
| homer | homer/4.11.1 |
| htop | htop/3.2.2 |
| htseq | N/A - User install in their python/conda environments |
| htslib | htslib/1.17 |
| idba | idba/1.1.3 |
| idemp | idemp/201706 |
| idl | idl/8.8.2 |
| idl_DEEPS | N/A |
| igraph | igraph/0.7.1 |
| imagej | imagej/154-linux64-java8 |
| imagemagick | imagemagick/7.1.1-3 |
| incisive | |
| inkscape | inkscape/1.3s |
| intel | intel-oneapi-compilers/2023.1.0 |
| intltool | intltool/0.51.0 |
| ior | ior-mpi/3.3.0 |
| iq-tree | iq-tree/2.1.3 |
| iraf | iraf/2.17.1s |
| isis | N/A - User install in their python/conda environments |
| JAGS | jags/4.3.1 |
| java | openjdk/11.0.17_8 |
| jellyfish | jellyfish/2.2.7 |
| jo | jo/1.9 |
| json_cpp | jsoncpp/1.9.5 |
| json_fortran | [email protected] |
| julia | julia/1.9.0 |
| keras | N/A - User install in their python/conda environments |
| kneaddata | N/A - User install in their python/conda environments |
| kraken | kraken/1.1.1 |
| lammps | lammps-mpi/20220623.3 |
| lapack | netlib-lapack/3.11.0 |
| leveldb | leveldb/1.23 |
| lftp | lftp/4.9.2 |
| libarchive | libarchive/3.6.2 |
| libbeef | libbeef/Nov2020 |
| libcutensor | cutensor/1.5.0.3 |
| libgd | libgd/2.3.3 |
| libgeotiff | libgeotiff/1.6.0 |
| libgit | libgit2/1.6.4 |
| libjpeg | libjpeg/9e |
| libjpeg-turbo | libjpeg-turbo/2.1.5 |
| libpng12 | libpng/1.6.39 |
| libreoffice | libreoffice/7.2.2.sif |
| libtiff | libtiff/4.5.0 |
| libvdwxc | libvdwxc-mpi/0.4.0 |
| libwnck | libwnck/3.24.1 |
| libxc | libxc/5.2.3 |
| libzip | libzip/1.3.2 |
| llvm | llvm/16.0.2 |
| macs | N/A - User install in their python/conda environments |
| mafft | mafft/7.505 |
| magma-gpu | magma/2.7.1 |
| maple | maple/22 |
| mark | mark/2018.07.08 |
| materialstudio | materialstudio/2020s |
| mathematica | mathematica/13.2.0 |
| matlab | matlab/R2023a |
| matplotlib | N/A - User install in their python/conda environments |
| maven | maven/3.8.4 |
| mayavi | N/A - User install in their python/conda environments |
| meme | meme-mpi/5.3.0 |
| mentor-calibre | |
| mercurial | mercurial/5.8 |
| meshlab | |
| metaphlan | N/A - User install in their python/conda environments |
| metis | metis/5.1.0 |
| miniconda | miniconda3/23.11.0 |
| minimap2 | minimap2/2.14 |
| minvr | |
| mne | N/A - User install in their python/conda environments |
| molden | molden/6.7 |
| Molpro | |
| mpfr | mpfr/4.2.0 |
| mpi |
|
| mpi4py | N/A - User install in their python/conda environments |
| mrcc | |
| mriconvert | mriconvert/2.1.0 |
| mricrogl | mricrogl/2022.07.20 |
| mricron | mricron/201909 |
| msmc | msmc2/2.1.4 |
| msprime | N/A - User install in their python/conda environments |
| mujoco-py | N/A - User install in their python/conda environments |
| MultiQC | N/A - User install in their python/conda environments |
| multiwfn | multiwfn/3.8_1208 |
| mummer | mummer4/4.0.0rc1 |
| muscle | muscle/3.8.1551 |
| mysql | mysql/8.0.29 |
| n2p2 | n2p2-mpi/2.2.0 |
| nbo | nbo/7.0 |
| nccl | nccl/2.16.2-1 |
| ncdu | ncdu/1.18.1 |
| ncl | ncl-mpi/6.6.2 |
| nco | nco/5.1.5 |
| ncview | ncview/2.1.8 |
| neovim | neovim/0.9.4 |
| netcdf | netcdf-c/4.7.4 |
| netpbm | netpbm/10.73.43 |
| neuron | N/A - User install in their python/conda environments |
| ninja | ninja/1.11.1 |
| nipype | N/A - User install in their python/conda environments |
| nlopt | nlopt/2.7.1 |
| node.js | node-js/18.12.1 |
| numpy | N/A - User install in their python/conda environments |
| numpydoc | N/A - User install in their python/conda environments |
| nvhpc-sdk | nvhpc/23.3 |
| nvtop | nvtop/3.0.1 |
| nwchem | nwchem-mpi/7.2.0 |
| obitools | N/A - User install in their python/conda environments |
| octopus | octopus-lunter/0.7.4 |
| openbabel | openbabel/3.1.1 |
| openblas | openblas/0.3.23 |
| opencv | opencv/4.6.0s |
| opencv-python | N/A - User install in their python/conda environments |
| openexr | openexr/3.1.5 |
| openfoam | |
| opengl | mesa/22.1.6 |
| openjpeg | openjpeg/2.5.0 |
| openmolcas | |
| openscenegraph | N/A |
| openslide | openslide/3.4.1 |
| openslide-python | N/A - User install in their python/conda environments |
| openssl |
|
| orca | orca-mpi/5.0.7 |
| osgearth | N/A |
| ovito | ovito/3.6.0 |
| p7zip | p7zip/17.05 |
| pandas | N/A - User install in their python/conda environments |
| pandoc | pandoc/2.19.2 |
| paraview | |
| patchelf | patchelf/0.17.2 |
| paup | paup/4.0a168 |
| pcre2 | pcre2/10.42 |
| pdftk | pdftk/2.02 |
| pdsh | pdsh-chaos/22.12 |
| perl | perl/5.36.0 |
| petsc | |
| photoscan | |
| picard-tools | picard/2.26.2 |
| pigz | pigz/2.7 |
| planetaryviewer | N/A - User install in their python/conda environments |
| plink | plink/2.00 |
| plotly | N/A - User install in their python/conda environments |
| plumed | |
| pnetcdf | parallel-netcdf-mpi/1.12.3 |
| popoolation2 | popoolation2/1.205s |
| prodigal | prodigal/2.6.3 |
| proj | proj/9.2.0 |
| protobuf | protobuf/3.22.2 |
| py2bit | N/A - User install in their python/conda environments |
| pybigwig | N/A - User install in their python/conda environments |
| pycharm | pycharm-community/2021.3.3 |
| pymol | N/A - User install in their python/conda environments |
| pypy | pypy/7.3.13 |
| pysam | N/A - User install in their python/conda environments |
| pyscf | N/A - User install in their python/conda environments |
| python | (system RPM - python/3.9.16) |
| pytorch | N/A - User install in their python/conda environments |
| qchem | |
| qgis | qgis/3.22 |
| qiime | N/A - User install in their python/conda environments |
| qit | qit/2023-04-04 |
| qmcpack | qmcpack-mpi/3.16.0s |
| qt | qt/5.15.9 |
| qualimap | qualimap/2.2.1 |
| quantumespresso | quantum-espresso/7.1 |
| quast | N/A - User install in their python/conda environments |
| R | r/4.2.2 |
| RAiSD | raisd/2.9 |
| raxml | |
| raxml-ng | raxml-ng-mpi/1.1.0 |
| rclone | rclone/1.62.2 |
| repeatmasker | repeatmasker-mpi/4.1.2-p1 |
| root | root/6.28.04 |
| rsem | rsem/1.3.3 |
| rstudio | rstudio/2023.09.1 |
| rsync | (system RPM) |
| ruby | ruby/3.1.0 |
| rust | rust/1.74.0s |
| sage | sage/9.5 |
| salmon | salmon/1.9.0 |
| samtools | samtools/1.16.1 |
| SAS | |
| scalable | N/A |
| scalapack | netlib-scalapack |
| schrodinger | schrodinger/2023-4 |
| scikit-image | N/A - Users install in their python/conda environments |
| scikit-learn | N/A - Users install in their python/conda environments |
| scons | scons/4.5.2 |
| scotch | scotch-mpi/7.0.3 |
| seaborn | N/A - Users install in their python/conda environments |
| selscan | selscan/2.0.0 |
| seqkit | seqkit/0.10.1 |
| seqtk | seqtk/1.3 |
| sextractor | sextractor/2.25.0 |
| sga | N/A |
| sharc | sharc-mpi/3.0.1 |
| singularity2 | (system RPM) |
| six | N/A - Users install in their python/conda environments |
| skewer | skewer/0.2.2 |
| slicer | slicer/5.4.0 |
| slim | slim/4.0.1 |
| snakemake | N/A - Users install in their python/conda environments |
| SNAP | N/A |
| spectre | |
| splash | splash/2.1.4 |
| spm | spm/12_r7606 |
| spyder | N/A - Users install in their python/conda environments |
| sqlite | (system RPM) |
| sratoolkit | sratoolkit/3.0.0 |
| stacks | stacks/2.65 |
| star | star/2.7.10b |
| stata | stata/mp17 |
| statsmodels | N/A - Users install in their python/conda environments |
| stringtie | stringtie/2.2.1 |
| sublime | sublime-text/4.4143 |
| subread | subread/2.0.2 |
| svn | subversion/1.14.1 |
| swarp | swarp/2.41.5 |
| sympy | N/A - Users install in their python/conda environments |
| synopsys | |
| sysstat | sysstat/12.5.4 |
| tabix | tabix/2013-12-16 |
| tecplot | tecplot/2022r1 |
| tensorflow | N/A - Users install in their python/conda environments |
| tesseract | tesseract/4.1.1 |
| texlive | texlive/20220321 |
| texstudio | texstudio/3.0.1 |
| tmux | tmux/3.3a |
| tn93 | tn93/1.0.12- |
| tophat | |
| tortoise | N/A |
| tree | tree/2.1.0-7 |
| trimal | trimal/1.4.1 |
| trimgalore | trimgalore/0.6.6 |
| trimmomatic | trimmomatic/0.39 |
| trinity | |
| udunits | udunits/2.2.28 |
| usearch | usearch/11.0.667 |
| v8 | v8/3.14.5 |
| vasp |
|
| vcftools | vcftools/0.1.14 |
| vep | |
| vim | (system RPM) |
| virtualgl | virtualgl/3.1 |
| visit | N/A |
| vmd | vmd/1.9.3 |
| vrg3d | N/A |
| vrpn | N/A |
| vscode | vscode/1.84.2 |
| vtk | vtk-mpi/9.2.6 |
| wcstools | wcstools/3.9.7 |
| weblogo | N/A - Users install in their python/conda environments |
| workshop | N/A |
| xcrysden | xcrysden/1.5.60 |
| xeyes | xeyes/1.2.0 |
| xfce | |
| xgboost | xgboost/1.6.2 |
| Xvfb | (system RPM) |
| yaml-cpp | yaml-cpp/0.7.0 |
| zlib | zlib/1.2.13 |
| zsh | (system RPM) |