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@sahakiann sahakiann released this 03 Oct 15:50
· 248 commits to master since this release
2.21.1
ab140e2
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Learn about vigilant mode.
  • Fixing up tests in MarkDuplicates so that tests with duplex UMIs are handled properly. (#1404)
  • Make crosscheck take a file->sample map input so that we can crosscheck to a un-duplicated vcf. (#1303)
  • Improvements to the locus iteration. (#1376)
    • Added in a progress meter to CollectSamErrorMetrics.
    • Added a flag to enable jumping to loci rather than iterating through all variants / loci in order each run.
  • Added a test to CollectHsMetrics to harden against future code changes (#1386)
    • Added a test to CollectHsMetrics to harden against future code changes.
    • removed non-working (and unneeded) code in reflectiveCopy
    • added some protection against NPE
    • cleaned-up some code formatting issues.
    • sanitized some sam files.
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