Add checkpoint after to_dense_mt for trio stats #641
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klaricch
requested changes
Oct 18, 2024
| @@ -481,6 +481,7 @@ def run_generate_trio_stats( | |||
| rmt = rmt.filter_cols(hl.is_defined(vmt.cols()[rmt.col_key])) | |||
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| mt = hl.vds.to_dense_mt(hl.vds.VariantDataset(rmt, vmt)) | |||
| mt = mt.checkpoint(hl.utils.new_temp_file("trio_stats_dense", "mt"), overwrite=True) | |||
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| mt = mt.checkpoint(hl.utils.new_temp_file("trio_stats_dense", "mt"), overwrite=True) | |
| mt = mt.checkpoint(hl.utils.new_temp_file("trio_stats_dense", "mt")) |
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the overwrite arg isn't needed when using new_temp_file
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L560, L621, L665 had overwrite too, should I remove them?
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yeah those can be removed too
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