Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

preselect.R Don't assume multiple identical plates #8

Open
bethac07 opened this issue May 4, 2017 · 2 comments
Open

preselect.R Don't assume multiple identical plates #8

bethac07 opened this issue May 4, 2017 · 2 comments

Comments

@bethac07
Copy link
Collaborator

bethac07 commented May 4, 2017

preselect.R assumes that replicates can be found by looking for 2 plates that have an identical "Metadata_Plate_Map_Name" and then saying the replicates are just a matter of matching wells across these identical plates.

In some experiments, however, each plate may be unique, and replicates may be found in either a different location on the same (or even another) plate. Allowing the user an optional flag to pass something else would be helpful.

@shntnu
Copy link
Collaborator

shntnu commented May 4, 2017

This can be done but note that two plates with the same Metadata_Plate_Map_Name should be identical. If they are not, then they have different plate maps.

Nonetheless, it makes sense to be able to specify other grouping variables to define replicates

@bethac07
Copy link
Collaborator Author

bethac07 commented May 4, 2017

This can be done but note that two plates with the same Metadata_Plate_Map_Name should be identical.

Completely on board with this. 😄

TY!

@shntnu shntnu changed the title Don't assume multiple identical plates preselect.R Don't assume multiple identical plates Mar 25, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants