cmQTL uses custom cytominer scripts for single cell type profiling

[gwaybio]

The code introduced in broadinstitute/cytominer_scripts#30 includes the customized cytominer scripts used to process the cmQTL pilot data.

This analysis is not reproducible until these changes are officially merged into cytominer

[gwaybio]

Changes added in broadinstitute/cytominer_scripts@1340d0e should allow the aggregate step to work

Note that this is not tested.

@shntnu , perhaps you can (if it ends up not being too much of a hassle) use the cytominer scripts from the issue/29 branch

[shntnu]

@gwaygenomics This was the issue I mentioned over our chat. I'll peek into the code again and figure out what I'd need help with.

[shntnu]

We decided not to produce these profiles going forward, given that all the analysis is now happening directly on the single cell data #30 (comment)