tool_conf.xml

<?xml version='1.0' encoding='utf-8'?>
<toolbox monitor="true" tool_path="${tool_conf_dir}" is_shed_conf="false">
  <section id="islandcompare" name="IslandCompare">
	<tool file="colombo/SigiHMM.xml" />
	<tool file="feature_merge/feature_merge.xml" />
	<tool file="islandpath/IslandPath.xml" />
	<tool file="mash/mash.xml" />
	<tool file="parsnp/ParSNP.xml" />
	<tool file="mcl/mcl.xml" />
	<tool file="biopython-convert/biopython-convert.xml" />
	<tool file="extract_tree_order/extract_tree_order.xml" />
	<tool file="mauve_contig_mover/mauve_contig_mover.xml" />
	<tool file="mauve_contig_mover/mcm_stitch.xml" />
	<tool file="make_unique_id/make_unique_id.xml" />
	<tool file="sendmail/sendmail.xml" />
	<tool file="hash/sha256sum.xml" />
	<tool file="base64/base64.xml" />
	<tool file="awkscript/awkscript.xml" />
	<tool file="microbedb/all_fasta.xml" />
	<!-- tool file="inspect/inspect.xml" / -->
  </section>
</toolbox>