From 93762e32cf81c0c811baa51655b9c90994634e72 Mon Sep 17 00:00:00 2001 From: Brent Pedersen Date: Wed, 23 Sep 2020 14:50:21 -0700 Subject: [PATCH] clarify readme --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 68beb49..1b3f97e 100644 --- a/README.md +++ b/README.md @@ -17,8 +17,10 @@ these formats can be output by [mosdepth](https://github.com/brentp/mosdepth) bu Generate a report: ``` -seqcover report PIGA,KCNQ2,ARX,DNM1,SLC25A22,CDKL5,GABRA1,CAD,MDH2,SCN1B,CNPY3,CPLX1,RHOBTB --background seqcover/seqcover_p5.d4 \ - --fasta $fasta samples/*.bed.gz +seqcover report --genes PIGA,KCNQ2,ARX,DNM1,SLC25A22,CDKL5,GABRA1,CAD,MDH2,SCN1B,CNPY3,CPLX1,RHOBTB \ + --background seqcover/seqcover_p5.d4 \ + --fasta $fasta samples/*.bed.gz \ + -r my_genes_report.html ``` Generate a background level: