From 849a592e706b58db59f01f140af87f5a760f80af Mon Sep 17 00:00:00 2001 From: <> Date: Wed, 7 Feb 2024 07:00:06 +0000 Subject: [PATCH] Deployed 2a8f07d with MkDocs version: 1.5.3 --- ANATOMICALDIRECTION/index.html | 7 +- AnatomicalSpace/index.html | 6 -- ParcellationAtlas/index.html | 16 ++-- index.html | 2 +- search/search_index.json | 2 +- sitemap.xml | 144 ++++++++++++++++----------------- sitemap.xml.gz | Bin 736 -> 736 bytes 7 files changed, 89 insertions(+), 88 deletions(-) diff --git a/ANATOMICALDIRECTION/index.html b/ANATOMICALDIRECTION/index.html index 8751f39..b42ef17 100644 --- a/ANATOMICALDIRECTION/index.html +++ b/ANATOMICALDIRECTION/index.html @@ -317,6 +317,7 @@

Enum: ANATOMICALDIRECTION

+

A controlled vocabulary term defining axis direction in terms of anatomical direction.

URI: ANATOMICALDIRECTION

Permissible Values

@@ -331,7 +332,7 @@

Permissible Values

- + @@ -377,13 +378,13 @@

LinkML Source

name: ANATOMICAL_DIRECTION
+description: A controlled vocabulary term defining axis direction in terms of anatomical
+  direction.
 from_schema: https://w3id.org/my-org/ansrs-schema
 rank: 1000
 permissible_values:
   left_to_right:
     text: left_to_right
-    description: A controlled vocabulary term defining the x axis direction in terms
-      of  anatomical direction.
     title: left-to-right
   posterior_to_anterior:
     text: posterior_to_anterior
diff --git a/AnatomicalSpace/index.html b/AnatomicalSpace/index.html
index 0f48e65..81fa68d 100644
--- a/AnatomicalSpace/index.html
+++ b/AnatomicalSpace/index.html
@@ -317,12 +317,6 @@ 
Usages
- - - - - -
left_to_right NoneA controlled vocabulary term defining the x axis direction in terms of anato...
posterior_to_anterior range AnatomicalSpace
ParcellationAtlasrevision_ofrangeAnatomicalSpace

Identifier and Mapping Information

diff --git a/ParcellationAtlas/index.html b/ParcellationAtlas/index.html index 1ccfdcb..d991bfa 100644 --- a/ParcellationAtlas/index.html +++ b/ParcellationAtlas/index.html @@ -231,7 +231,7 @@

Class: ParcellationAtlas

ParcellationAtlas : revision_of - ParcellationAtlas --> AnatomicalSpace : revision_of + ParcellationAtlas --> ParcellationAtlas : revision_of ParcellationAtlas : specialization_of @@ -294,7 +294,7 @@

Slots

revision_of -0..1
AnatomicalSpace +0..1
ParcellationAtlas VersionedNamedThing @@ -335,6 +335,12 @@

Usages

range ParcellationAtlas + +ParcellationAtlas +revision_of +range +ParcellationAtlas +

Identifier and Mapping Information

@@ -382,7 +388,7 @@

Direct

name: revision_of domain_of: - VersionedNamedThing - range: AnatomicalSpace + range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space @@ -436,7 +442,7 @@

Induced

name: revision_of domain_of: - VersionedNamedThing - range: AnatomicalSpace + range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space @@ -502,7 +508,7 @@

Induced

owner: ParcellationAtlas domain_of: - VersionedNamedThing - range: AnatomicalSpace + range: ParcellationAtlas id: name: id from_schema: https://w3id.org/my-org/ansrs-schema diff --git a/index.html b/index.html index 8e00c19..6c36c47 100644 --- a/index.html +++ b/index.html @@ -608,7 +608,7 @@

Enumerations

ANATOMICALDIRECTION - +A controlled vocabulary term defining axis direction in terms of anatomical d... DISTANCEUNIT diff --git a/search/search_index.json b/search/search_index.json index 0aeae93..ef983b3 100644 --- a/search/search_index.json +++ b/search/search_index.json @@ -1 +1 @@ -{"config":{"indexing":"full","lang":["en"],"min_search_length":3,"prebuild_index":false,"separator":"[\\s\\-]+"},"docs":[{"location":"","text":"ANSRS schema Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema Name: ansrs-schema Classes Class Description NamedThing Core base entity for ANSRS schema representing an entity with an identifier name and description. ParcellationTerm A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. Slots Slot Description color A string representing to hex triplet code of a color description has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atla... has_anatomical_space Reference to the anatomical space component of the parcellation atlas has_parcellation_terminology Reference to the parcellation terminology component of the parcellation atlas has_parent_parcellation_term Reference to the parent parcellation term for which the parcellation term is ... has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term... id internal_identifier An identifier that uniquely denotes a specific parcellation annotation within... measures Reference to the specific image dataset used to define the anatomical space name ordinal Ordinal of the parcellation term set among other term sets within the context... parameterizes Reference to the anatomical space for which the anatomical annotation set is ... part_of_anatomical_annotation_set part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is ... part_of_parcellation_term_set Reference to the parcellation term set for which the parcellation term is par... part_of_parcellation_terminology Reference to the parcellation terminology for which the parcellation term set... revision_of specialization_of Reference to the general (non versioned) parcellation atlas for which the par... subject_parcellation_annotation Reference to the parcellation annotation that is the subject of the associati... subject_parcellation_term Reference to the parcellation term identifier for which the color assignment ... subject_parcellation_terminology Reference to the parcellation terminology for which the parcellation color sc... symbol Symbol representing a parcellation term unit A controlled vocabulary attribute defining the length unit of the x, y, and z... version voxel_count The number of voxels (3D pixels) spanned by the parcellation annotation (opti... x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... x_resolution The resolution (length / pixel) in along the x axis (numerical value part) x_size The number of pixels/voxels (size) along the x axis y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... y_resolution The resolution (length / pixel) in along the y axis (numerical value part) y_size The number of pixels/voxels (size) along the y axis z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... z_resolution The resolution (length / pixel) in along the z axis (numerical value part) z_size The number of pixels/voxels (size) along the y axis Enumerations Enumeration Description ANATOMICALDIRECTION DISTANCEUNIT Types Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE Subsets Subset Description","title":"Index"},{"location":"#ansrs-schema","text":"Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema Name: ansrs-schema","title":"ANSRS schema"},{"location":"#classes","text":"Class Description NamedThing Core base entity for ANSRS schema representing an entity with an identifier name and description. ParcellationTerm A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to.","title":"Classes"},{"location":"#slots","text":"Slot Description color A string representing to hex triplet code of a color description has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atla... has_anatomical_space Reference to the anatomical space component of the parcellation atlas has_parcellation_terminology Reference to the parcellation terminology component of the parcellation atlas has_parent_parcellation_term Reference to the parent parcellation term for which the parcellation term is ... has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term... id internal_identifier An identifier that uniquely denotes a specific parcellation annotation within... measures Reference to the specific image dataset used to define the anatomical space name ordinal Ordinal of the parcellation term set among other term sets within the context... parameterizes Reference to the anatomical space for which the anatomical annotation set is ... part_of_anatomical_annotation_set part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is ... part_of_parcellation_term_set Reference to the parcellation term set for which the parcellation term is par... part_of_parcellation_terminology Reference to the parcellation terminology for which the parcellation term set... revision_of specialization_of Reference to the general (non versioned) parcellation atlas for which the par... subject_parcellation_annotation Reference to the parcellation annotation that is the subject of the associati... subject_parcellation_term Reference to the parcellation term identifier for which the color assignment ... subject_parcellation_terminology Reference to the parcellation terminology for which the parcellation color sc... symbol Symbol representing a parcellation term unit A controlled vocabulary attribute defining the length unit of the x, y, and z... version voxel_count The number of voxels (3D pixels) spanned by the parcellation annotation (opti... x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... x_resolution The resolution (length / pixel) in along the x axis (numerical value part) x_size The number of pixels/voxels (size) along the x axis y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... y_resolution The resolution (length / pixel) in along the y axis (numerical value part) y_size The number of pixels/voxels (size) along the y axis z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... z_resolution The resolution (length / pixel) in along the z axis (numerical value part) z_size The number of pixels/voxels (size) along the y axis","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description ANATOMICALDIRECTION DISTANCEUNIT","title":"Enumerations"},{"location":"#types","text":"Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE","title":"Types"},{"location":"#subsets","text":"Subset Description","title":"Subsets"},{"location":"ANATOMICALDIRECTION/","text":"Enum: ANATOMICALDIRECTION URI: ANATOMICALDIRECTION Permissible Values Value Meaning Description left_to_right None A controlled vocabulary term defining the x axis direction in terms of anato... posterior_to_anterior None inferior_to_superior None Slots Name Description x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: ANATOMICAL_DIRECTION from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: left_to_right: text: left_to_right description: A controlled vocabulary term defining the x axis direction in terms of anatomical direction. title: left-to-right posterior_to_anterior: text: posterior_to_anterior title: posterior-to-anterior inferior_to_superior: text: inferior_to_superior title: inferior-to-superior","title":"Enum: ANATOMICALDIRECTION"},{"location":"ANATOMICALDIRECTION/#enum-anatomicaldirection","text":"URI: ANATOMICALDIRECTION","title":"Enum: ANATOMICALDIRECTION"},{"location":"ANATOMICALDIRECTION/#permissible-values","text":"Value Meaning Description left_to_right None A controlled vocabulary term defining the x axis direction in terms of anato... posterior_to_anterior None inferior_to_superior None","title":"Permissible Values"},{"location":"ANATOMICALDIRECTION/#slots","text":"Name Description x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... z_direction A controlled vocabulary attribute defining the z axis direction in terms of a...","title":"Slots"},{"location":"ANATOMICALDIRECTION/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ANATOMICALDIRECTION/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ANATOMICALDIRECTION/#linkml-source","text":"name: ANATOMICAL_DIRECTION from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: left_to_right: text: left_to_right description: A controlled vocabulary term defining the x axis direction in terms of anatomical direction. title: left-to-right posterior_to_anterior: text: posterior_to_anterior title: posterior-to-anterior inferior_to_superior: text: inferior_to_superior title: inferior-to-superior","title":"LinkML Source"},{"location":"AnatomicalAnnotationSet/","text":"Class: AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) URI: ANSRS:AnatomicalAnnotationSet classDiagram class AnatomicalAnnotationSet VersionedNamedThing <|-- AnatomicalAnnotationSet AnatomicalAnnotationSet : description AnatomicalAnnotationSet : id AnatomicalAnnotationSet : name AnatomicalAnnotationSet : parameterizes AnatomicalAnnotationSet --> AnatomicalSpace : parameterizes AnatomicalAnnotationSet : revision_of AnatomicalAnnotationSet --> ParcellationTerminology : revision_of AnatomicalAnnotationSet : version Inheritance NamedThing VersionedNamedThing AnatomicalAnnotationSet Slots Name Cardinality and Range Description Inheritance parameterizes 1..1 AnatomicalSpace Reference to the anatomical space for which the anatomical annotation set is ... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationAnnotation part_of_anatomical_annotation_set range AnatomicalAnnotationSet ParcellationAtlas has_anatomical_annotation_set range AnatomicalAnnotationSet Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:AnatomicalAnnotationSet native ANSRS:AnatomicalAnnotationSet LinkML Source Direct name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true Induced name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalAnnotationSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true","title":"Class: AnatomicalAnnotationSet"},{"location":"AnatomicalAnnotationSet/#class-anatomicalannotationset","text":"An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) URI: ANSRS:AnatomicalAnnotationSet classDiagram class AnatomicalAnnotationSet VersionedNamedThing <|-- AnatomicalAnnotationSet AnatomicalAnnotationSet : description AnatomicalAnnotationSet : id AnatomicalAnnotationSet : name AnatomicalAnnotationSet : parameterizes AnatomicalAnnotationSet --> AnatomicalSpace : parameterizes AnatomicalAnnotationSet : revision_of AnatomicalAnnotationSet --> ParcellationTerminology : revision_of AnatomicalAnnotationSet : version","title":"Class: AnatomicalAnnotationSet"},{"location":"AnatomicalAnnotationSet/#inheritance","text":"NamedThing VersionedNamedThing AnatomicalAnnotationSet","title":"Inheritance"},{"location":"AnatomicalAnnotationSet/#slots","text":"Name Cardinality and Range Description Inheritance parameterizes 1..1 AnatomicalSpace Reference to the anatomical space for which the anatomical annotation set is ... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"AnatomicalAnnotationSet/#usages","text":"used by used in type used ParcellationAnnotation part_of_anatomical_annotation_set range AnatomicalAnnotationSet ParcellationAtlas has_anatomical_annotation_set range AnatomicalAnnotationSet","title":"Usages"},{"location":"AnatomicalAnnotationSet/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnatomicalAnnotationSet/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"AnatomicalAnnotationSet/#mappings","text":"Mapping Type Mapped Value self ANSRS:AnatomicalAnnotationSet native ANSRS:AnatomicalAnnotationSet","title":"Mappings"},{"location":"AnatomicalAnnotationSet/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnatomicalAnnotationSet/#direct","text":"name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true","title":"Direct"},{"location":"AnatomicalAnnotationSet/#induced","text":"name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalAnnotationSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"AnatomicalSpace/","text":"Class: AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) URI: ANSRS:AnatomicalSpace classDiagram class AnatomicalSpace VersionedNamedThing <|-- AnatomicalSpace AnatomicalSpace : description AnatomicalSpace : id AnatomicalSpace : measures AnatomicalSpace --> ImageDataset : measures AnatomicalSpace : name AnatomicalSpace : revision_of AnatomicalSpace --> AnatomicalSpace : revision_of AnatomicalSpace : version Inheritance NamedThing VersionedNamedThing AnatomicalSpace Slots Name Cardinality and Range Description Inheritance measures 1..1 ImageDataset Reference to the specific image dataset used to define the anatomical space direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used AnatomicalSpace revision_of range AnatomicalSpace AnatomicalAnnotationSet parameterizes range AnatomicalSpace ParcellationAtlas has_anatomical_space range AnatomicalSpace ParcellationAtlas revision_of range AnatomicalSpace Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:AnatomicalSpace native ANSRS:AnatomicalSpace LinkML Source Direct name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ImageDataset required: true Induced name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: measures owner: AnatomicalSpace domain_of: - AnatomicalSpace range: ImageDataset required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalSpace domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalSpace domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalSpace domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalSpace domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalSpace domain_of: - NamedThing range: string required: true","title":"Class: AnatomicalSpace"},{"location":"AnatomicalSpace/#class-anatomicalspace","text":"An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) URI: ANSRS:AnatomicalSpace classDiagram class AnatomicalSpace VersionedNamedThing <|-- AnatomicalSpace AnatomicalSpace : description AnatomicalSpace : id AnatomicalSpace : measures AnatomicalSpace --> ImageDataset : measures AnatomicalSpace : name AnatomicalSpace : revision_of AnatomicalSpace --> AnatomicalSpace : revision_of AnatomicalSpace : version","title":"Class: AnatomicalSpace"},{"location":"AnatomicalSpace/#inheritance","text":"NamedThing VersionedNamedThing AnatomicalSpace","title":"Inheritance"},{"location":"AnatomicalSpace/#slots","text":"Name Cardinality and Range Description Inheritance measures 1..1 ImageDataset Reference to the specific image dataset used to define the anatomical space direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"AnatomicalSpace/#usages","text":"used by used in type used AnatomicalSpace revision_of range AnatomicalSpace AnatomicalAnnotationSet parameterizes range AnatomicalSpace ParcellationAtlas has_anatomical_space range AnatomicalSpace ParcellationAtlas revision_of range AnatomicalSpace","title":"Usages"},{"location":"AnatomicalSpace/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnatomicalSpace/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"AnatomicalSpace/#mappings","text":"Mapping Type Mapped Value self ANSRS:AnatomicalSpace native ANSRS:AnatomicalSpace","title":"Mappings"},{"location":"AnatomicalSpace/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnatomicalSpace/#direct","text":"name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ImageDataset required: true","title":"Direct"},{"location":"AnatomicalSpace/#induced","text":"name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: measures owner: AnatomicalSpace domain_of: - AnatomicalSpace range: ImageDataset required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalSpace domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalSpace domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalSpace domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalSpace domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalSpace domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DISTANCEUNIT/","text":"Enum: DISTANCEUNIT URI: DISTANCEUNIT Permissible Values Value Meaning Description mm None um None m None Slots Name Description unit A controlled vocabulary attribute defining the length unit of the x, y, and z... Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: DISTANCE_UNIT from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: mm: text: mm title: millimeter um: text: um title: micrometer m: text: m title: meter","title":"Enum: DISTANCEUNIT"},{"location":"DISTANCEUNIT/#enum-distanceunit","text":"URI: DISTANCEUNIT","title":"Enum: DISTANCEUNIT"},{"location":"DISTANCEUNIT/#permissible-values","text":"Value Meaning Description mm None um None m None","title":"Permissible Values"},{"location":"DISTANCEUNIT/#slots","text":"Name Description unit A controlled vocabulary attribute defining the length unit of the x, y, and z...","title":"Slots"},{"location":"DISTANCEUNIT/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DISTANCEUNIT/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DISTANCEUNIT/#linkml-source","text":"name: DISTANCE_UNIT from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: mm: text: mm title: millimeter um: text: um title: micrometer m: text: m title: meter","title":"LinkML Source"},{"location":"Date/","text":"Type: Date a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ImageDataset/","text":"Class: ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) URI: ANSRS:ImageDataset classDiagram class ImageDataset VersionedNamedThing <|-- ImageDataset ImageDataset : description ImageDataset : id ImageDataset : name ImageDataset : revision_of ImageDataset --> ImageDataset : revision_of ImageDataset : unit ImageDataset --> DISTANCE_UNIT : unit ImageDataset : version ImageDataset : x_direction ImageDataset --> ANATOMICAL_DIRECTION : x_direction ImageDataset : x_resolution ImageDataset : x_size ImageDataset : y_direction ImageDataset --> ANATOMICAL_DIRECTION : y_direction ImageDataset : y_resolution ImageDataset : y_size ImageDataset : z_direction ImageDataset --> ANATOMICAL_DIRECTION : z_direction ImageDataset : z_resolution ImageDataset : z_size Inheritance NamedThing VersionedNamedThing ImageDataset Slots Name Cardinality and Range Description Inheritance x_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the x axis direction in terms of a... direct y_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the y axis direction in terms of a... direct z_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the z axis direction in terms of a... direct x_size 0..1 Integer The number of pixels/voxels (size) along the x axis direct y_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct z_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct x_resolution 0..1 Float The resolution (length / pixel) in along the x axis (numerical value part) direct y_resolution 0..1 Float The resolution (length / pixel) in along the y axis (numerical value part) direct z_resolution 0..1 Float The resolution (length / pixel) in along the z axis (numerical value part) direct unit 0..1 DISTANCEUNIT A controlled vocabulary attribute defining the length unit of the x, y, and z... direct version 1..1 String VersionedNamedThing revision_of 0..1 ImageDataset VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ImageDataset revision_of range ImageDataset AnatomicalSpace measures range ImageDataset Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ImageDataset native ANSRS:ImageDataset LinkML Source Direct name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: DISTANCE_UNIT Induced name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: unit owner: ImageDataset domain_of: - ImageDataset range: DISTANCE_UNIT version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ImageDataset domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ImageDataset domain_of: - VersionedNamedThing range: ImageDataset id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ImageDataset domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ImageDataset domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ImageDataset domain_of: - NamedThing range: string required: true","title":"Class: ImageDataset"},{"location":"ImageDataset/#class-imagedataset","text":"An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) URI: ANSRS:ImageDataset classDiagram class ImageDataset VersionedNamedThing <|-- ImageDataset ImageDataset : description ImageDataset : id ImageDataset : name ImageDataset : revision_of ImageDataset --> ImageDataset : revision_of ImageDataset : unit ImageDataset --> DISTANCE_UNIT : unit ImageDataset : version ImageDataset : x_direction ImageDataset --> ANATOMICAL_DIRECTION : x_direction ImageDataset : x_resolution ImageDataset : x_size ImageDataset : y_direction ImageDataset --> ANATOMICAL_DIRECTION : y_direction ImageDataset : y_resolution ImageDataset : y_size ImageDataset : z_direction ImageDataset --> ANATOMICAL_DIRECTION : z_direction ImageDataset : z_resolution ImageDataset : z_size","title":"Class: ImageDataset"},{"location":"ImageDataset/#inheritance","text":"NamedThing VersionedNamedThing ImageDataset","title":"Inheritance"},{"location":"ImageDataset/#slots","text":"Name Cardinality and Range Description Inheritance x_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the x axis direction in terms of a... direct y_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the y axis direction in terms of a... direct z_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the z axis direction in terms of a... direct x_size 0..1 Integer The number of pixels/voxels (size) along the x axis direct y_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct z_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct x_resolution 0..1 Float The resolution (length / pixel) in along the x axis (numerical value part) direct y_resolution 0..1 Float The resolution (length / pixel) in along the y axis (numerical value part) direct z_resolution 0..1 Float The resolution (length / pixel) in along the z axis (numerical value part) direct unit 0..1 DISTANCEUNIT A controlled vocabulary attribute defining the length unit of the x, y, and z... direct version 1..1 String VersionedNamedThing revision_of 0..1 ImageDataset VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ImageDataset/#usages","text":"used by used in type used ImageDataset revision_of range ImageDataset AnatomicalSpace measures range ImageDataset","title":"Usages"},{"location":"ImageDataset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ImageDataset/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ImageDataset/#mappings","text":"Mapping Type Mapped Value self ANSRS:ImageDataset native ANSRS:ImageDataset","title":"Mappings"},{"location":"ImageDataset/#linkml-source","text":"","title":"LinkML Source"},{"location":"ImageDataset/#direct","text":"name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: DISTANCE_UNIT","title":"Direct"},{"location":"ImageDataset/#induced","text":"name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: unit owner: ImageDataset domain_of: - ImageDataset range: DISTANCE_UNIT version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ImageDataset domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ImageDataset domain_of: - VersionedNamedThing range: ImageDataset id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ImageDataset domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ImageDataset domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ImageDataset domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"NamedThing/","text":"Class: NamedThing Core base entity for ANSRS schema representing an entity with an identifier name and description. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:NamedThing classDiagram class NamedThing NamedThing <|-- ParcellationTermSet NamedThing <|-- ParcellationTerm NamedThing <|-- VersionedNamedThing NamedThing : description NamedThing : id NamedThing : name Inheritance NamedThing ParcellationTermSet ParcellationTerm VersionedNamedThing Slots Name Cardinality and Range Description Inheritance id 1..1 Uriorcurie direct name 1..1 String direct description 1..1 String direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:NamedThing native ANSRS:NamedThing LinkML Source Direct name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true slots: - id - name - description Induced name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true attributes: id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: NamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: NamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: NamedThing domain_of: - NamedThing range: string required: true","title":"Class: NamedThing"},{"location":"NamedThing/#class-namedthing","text":"Core base entity for ANSRS schema representing an entity with an identifier name and description. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:NamedThing classDiagram class NamedThing NamedThing <|-- ParcellationTermSet NamedThing <|-- ParcellationTerm NamedThing <|-- VersionedNamedThing NamedThing : description NamedThing : id NamedThing : name","title":"Class: NamedThing"},{"location":"NamedThing/#inheritance","text":"NamedThing ParcellationTermSet ParcellationTerm VersionedNamedThing","title":"Inheritance"},{"location":"NamedThing/#slots","text":"Name Cardinality and Range Description Inheritance id 1..1 Uriorcurie direct name 1..1 String direct description 1..1 String direct","title":"Slots"},{"location":"NamedThing/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"NamedThing/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"NamedThing/#mappings","text":"Mapping Type Mapped Value self ANSRS:NamedThing native ANSRS:NamedThing","title":"Mappings"},{"location":"NamedThing/#linkml-source","text":"","title":"LinkML Source"},{"location":"NamedThing/#direct","text":"name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true slots: - id - name - description","title":"Direct"},{"location":"NamedThing/#induced","text":"name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true attributes: id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: NamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: NamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: NamedThing domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotation/","text":"Class: ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. URI: ANSRS:ParcellationAnnotation classDiagram class ParcellationAnnotation ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation --> AnatomicalAnnotationSet : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count Slots Name Cardinality and Range Description Inheritance part_of_anatomical_annotation_set 1..1 AnatomicalAnnotationSet direct internal_identifier 1..1 String An identifier that uniquely denotes a specific parcellation annotation within... direct voxel_count 0..1 Integer The number of voxels (3D pixels) spanned by the parcellation annotation (opti... direct Usages used by used in type used ParcellationAnnotationTermMap subject_parcellation_annotation range ParcellationAnnotation Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAnnotation native ANSRS:ParcellationAnnotation LinkML Source Direct name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0 Induced name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: voxel_count owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: integer minimum_value: 0","title":"Class: ParcellationAnnotation"},{"location":"ParcellationAnnotation/#class-parcellationannotation","text":"A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. URI: ANSRS:ParcellationAnnotation classDiagram class ParcellationAnnotation ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation --> AnatomicalAnnotationSet : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count","title":"Class: ParcellationAnnotation"},{"location":"ParcellationAnnotation/#slots","text":"Name Cardinality and Range Description Inheritance part_of_anatomical_annotation_set 1..1 AnatomicalAnnotationSet direct internal_identifier 1..1 String An identifier that uniquely denotes a specific parcellation annotation within... direct voxel_count 0..1 Integer The number of voxels (3D pixels) spanned by the parcellation annotation (opti... direct","title":"Slots"},{"location":"ParcellationAnnotation/#usages","text":"used by used in type used ParcellationAnnotationTermMap subject_parcellation_annotation range ParcellationAnnotation","title":"Usages"},{"location":"ParcellationAnnotation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAnnotation/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotation/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAnnotation native ANSRS:ParcellationAnnotation","title":"Mappings"},{"location":"ParcellationAnnotation/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAnnotation/#direct","text":"name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0","title":"Direct"},{"location":"ParcellationAnnotation/#induced","text":"name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: voxel_count owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: integer minimum_value: 0","title":"Induced"},{"location":"ParcellationAnnotationTermMap/","text":"Class: ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. URI: ANSRS:ParcellationAnnotationTermMap classDiagram class ParcellationAnnotationTermMap ParcellationAnnotationTermMap : subject_parcellation_annotation ParcellationAnnotationTermMap --> ParcellationAnnotation : subject_parcellation_annotation ParcellationAnnotationTermMap : subject_parcellation_term ParcellationAnnotationTermMap --> ParcellationTerm : subject_parcellation_term Slots Name Cardinality and Range Description Inheritance subject_parcellation_annotation 1..1 ParcellationAnnotation Reference to the parcellation annotation that is the subject of the associati... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term that is the subject of the association direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAnnotationTermMap native ANSRS:ParcellationAnnotationTermMap LinkML Source Direct name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema range: ParcellationTerm required: true Induced name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_annotation owner: ParcellationAnnotationTermMap domain_of: - ParcellationAnnotationTermMap range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema alias: subject_parcellation_term owner: ParcellationAnnotationTermMap domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true","title":"Class: ParcellationAnnotationTermMap"},{"location":"ParcellationAnnotationTermMap/#class-parcellationannotationtermmap","text":"The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. URI: ANSRS:ParcellationAnnotationTermMap classDiagram class ParcellationAnnotationTermMap ParcellationAnnotationTermMap : subject_parcellation_annotation ParcellationAnnotationTermMap --> ParcellationAnnotation : subject_parcellation_annotation ParcellationAnnotationTermMap : subject_parcellation_term ParcellationAnnotationTermMap --> ParcellationTerm : subject_parcellation_term","title":"Class: ParcellationAnnotationTermMap"},{"location":"ParcellationAnnotationTermMap/#slots","text":"Name Cardinality and Range Description Inheritance subject_parcellation_annotation 1..1 ParcellationAnnotation Reference to the parcellation annotation that is the subject of the associati... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term that is the subject of the association direct","title":"Slots"},{"location":"ParcellationAnnotationTermMap/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAnnotationTermMap/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotationTermMap/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAnnotationTermMap native ANSRS:ParcellationAnnotationTermMap","title":"Mappings"},{"location":"ParcellationAnnotationTermMap/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAnnotationTermMap/#direct","text":"name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema range: ParcellationTerm required: true","title":"Direct"},{"location":"ParcellationAnnotationTermMap/#induced","text":"name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_annotation owner: ParcellationAnnotationTermMap domain_of: - ParcellationAnnotationTermMap range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema alias: subject_parcellation_term owner: ParcellationAnnotationTermMap domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true","title":"Induced"},{"location":"ParcellationAtlas/","text":"Class: ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). URI: ANSRS:ParcellationAtlas classDiagram class ParcellationAtlas VersionedNamedThing <|-- ParcellationAtlas ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas --> AnatomicalAnnotationSet : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas --> AnatomicalSpace : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas --> ParcellationTerminology : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> AnatomicalSpace : revision_of ParcellationAtlas : specialization_of ParcellationAtlas --> ParcellationAtlas : specialization_of ParcellationAtlas : version Inheritance NamedThing VersionedNamedThing ParcellationAtlas Slots Name Cardinality and Range Description Inheritance has_anatomical_space 1..1 AnatomicalSpace Reference to the anatomical space component of the parcellation atlas direct has_anatomical_annotation_set 1..1 AnatomicalAnnotationSet Reference to the anatomical annotation set component of the parcellation atla... direct has_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology component of the parcellation atlas direct specialization_of 0..1 ParcellationAtlas Reference to the general (non versioned) parcellation atlas for which the par... direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationAtlas specialization_of range ParcellationAtlas Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAtlas native ANSRS:ParcellationAtlas LinkML Source Direct name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAtlas Induced name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: specialization_of owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationAtlas version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationAtlas domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationAtlas domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationAtlas domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationAtlas domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationAtlas domain_of: - NamedThing range: string required: true","title":"Class: ParcellationAtlas"},{"location":"ParcellationAtlas/#class-parcellationatlas","text":"A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). URI: ANSRS:ParcellationAtlas classDiagram class ParcellationAtlas VersionedNamedThing <|-- ParcellationAtlas ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas --> AnatomicalAnnotationSet : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas --> AnatomicalSpace : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas --> ParcellationTerminology : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> AnatomicalSpace : revision_of ParcellationAtlas : specialization_of ParcellationAtlas --> ParcellationAtlas : specialization_of ParcellationAtlas : version","title":"Class: ParcellationAtlas"},{"location":"ParcellationAtlas/#inheritance","text":"NamedThing VersionedNamedThing ParcellationAtlas","title":"Inheritance"},{"location":"ParcellationAtlas/#slots","text":"Name Cardinality and Range Description Inheritance has_anatomical_space 1..1 AnatomicalSpace Reference to the anatomical space component of the parcellation atlas direct has_anatomical_annotation_set 1..1 AnatomicalAnnotationSet Reference to the anatomical annotation set component of the parcellation atla... direct has_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology component of the parcellation atlas direct specialization_of 0..1 ParcellationAtlas Reference to the general (non versioned) parcellation atlas for which the par... direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationAtlas/#usages","text":"used by used in type used ParcellationAtlas specialization_of range ParcellationAtlas","title":"Usages"},{"location":"ParcellationAtlas/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAtlas/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAtlas/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAtlas native ANSRS:ParcellationAtlas","title":"Mappings"},{"location":"ParcellationAtlas/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAtlas/#direct","text":"name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAtlas","title":"Direct"},{"location":"ParcellationAtlas/#induced","text":"name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: specialization_of owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationAtlas version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationAtlas domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationAtlas domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationAtlas domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationAtlas domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationAtlas domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"ParcellationColorAssignment/","text":"Class: ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. URI: ANSRS:ParcellationColorAssignment classDiagram class ParcellationColorAssignment ParcellationColorAssignment : color ParcellationColorAssignment : part_of_parcellation_color_scheme ParcellationColorAssignment --> ParcellationColorScheme : part_of_parcellation_color_scheme ParcellationColorAssignment : subject_parcellation_term ParcellationColorAssignment --> ParcellationTerm : subject_parcellation_term Slots Name Cardinality and Range Description Inheritance part_of_parcellation_color_scheme 1..1 ParcellationColorScheme Reference to the parcellation color scheme for which the color assignment is ... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term identifier for which the color assignment ... direct color 0..1 String A string representing to hex triplet code of a color direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationColorAssignment native ANSRS:ParcellationColorAssignment LinkML Source Direct name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: string structured_pattern: syntax: '{ColorHexTriplet}' Induced name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_color_scheme owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_term owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Class: ParcellationColorAssignment"},{"location":"ParcellationColorAssignment/#class-parcellationcolorassignment","text":"The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. URI: ANSRS:ParcellationColorAssignment classDiagram class ParcellationColorAssignment ParcellationColorAssignment : color ParcellationColorAssignment : part_of_parcellation_color_scheme ParcellationColorAssignment --> ParcellationColorScheme : part_of_parcellation_color_scheme ParcellationColorAssignment : subject_parcellation_term ParcellationColorAssignment --> ParcellationTerm : subject_parcellation_term","title":"Class: ParcellationColorAssignment"},{"location":"ParcellationColorAssignment/#slots","text":"Name Cardinality and Range Description Inheritance part_of_parcellation_color_scheme 1..1 ParcellationColorScheme Reference to the parcellation color scheme for which the color assignment is ... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term identifier for which the color assignment ... direct color 0..1 String A string representing to hex triplet code of a color direct","title":"Slots"},{"location":"ParcellationColorAssignment/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationColorAssignment/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationColorAssignment/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationColorAssignment native ANSRS:ParcellationColorAssignment","title":"Mappings"},{"location":"ParcellationColorAssignment/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationColorAssignment/#direct","text":"name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Direct"},{"location":"ParcellationColorAssignment/#induced","text":"name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_color_scheme owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_term owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Induced"},{"location":"ParcellationColorScheme/","text":"Class: ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. 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A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. 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A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: subject_parcellation_terminology: name: subject_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation color scheme is in context of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_terminology owner: ParcellationColorScheme domain_of: - ParcellationColorScheme range: ParcellationTerminology required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationColorScheme domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationColorScheme domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationColorScheme domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationColorScheme domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationColorScheme domain_of: - NamedThing range: string required: true","title":"Class: ParcellationColorScheme"},{"location":"ParcellationColorScheme/#class-parcellationcolorscheme","text":"A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. URI: ANSRS:ParcellationColorScheme classDiagram class ParcellationColorScheme VersionedNamedThing <|-- ParcellationColorScheme ParcellationColorScheme : description ParcellationColorScheme : id ParcellationColorScheme : name ParcellationColorScheme : revision_of ParcellationColorScheme --> ParcellationTerminology : revision_of ParcellationColorScheme : subject_parcellation_terminology ParcellationColorScheme --> ParcellationTerminology : subject_parcellation_terminology ParcellationColorScheme : version","title":"Class: ParcellationColorScheme"},{"location":"ParcellationColorScheme/#inheritance","text":"NamedThing VersionedNamedThing ParcellationColorScheme","title":"Inheritance"},{"location":"ParcellationColorScheme/#slots","text":"Name Cardinality and Range Description Inheritance subject_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology for which the parcellation color sc... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationColorScheme/#usages","text":"used by used in type used ParcellationColorAssignment part_of_parcellation_color_scheme range ParcellationColorScheme","title":"Usages"},{"location":"ParcellationColorScheme/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationColorScheme/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationColorScheme/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationColorScheme native ANSRS:ParcellationColorScheme","title":"Mappings"},{"location":"ParcellationColorScheme/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationColorScheme/#direct","text":"name: ParcellationColorScheme description: A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: subject_parcellation_terminology: name: subject_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation color scheme is in context of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true","title":"Direct"},{"location":"ParcellationColorScheme/#induced","text":"name: ParcellationColorScheme description: A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. 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A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. URI: ANSRS:ParcellationTerm classDiagram class ParcellationTerm NamedThing <|-- ParcellationTerm ParcellationTerm : description ParcellationTerm : has_parent_parcellation_term ParcellationTerm --> ParcellationTerm : has_parent_parcellation_term ParcellationTerm : id ParcellationTerm : name ParcellationTerm : ordinal ParcellationTerm : part_of_parcellation_term_set ParcellationTerm --> ParcellationTermSet : part_of_parcellation_term_set ParcellationTerm : symbol Inheritance NamedThing ParcellationTerm Slots Name Cardinality and Range Description Inheritance symbol 0..1 String Symbol representing a parcellation term direct part_of_parcellation_term_set 1..1 ParcellationTermSet Reference to the parcellation term set for which the parcellation term is par... direct ordinal 0..1 Integer Ordinal of the parcellation term among other terms within the context of the ... direct has_parent_parcellation_term 0..1 ParcellationTerm Reference to the parent parcellation term for which the parcellation term is ... direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationTerm has_parent_parcellation_term range ParcellationTerm ParcellationColorAssignment subject_parcellation_term range ParcellationTerm ParcellationAnnotationTermMap subject_parcellation_term range ParcellationTerm Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationTerm native ANSRS:ParcellationTerm LinkML Source Direct name: ParcellationTerm description: A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: symbol: name: symbol description: Symbol representing a parcellation term. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 part_of_parcellation_term_set: name: part_of_parcellation_term_set description: Reference to the parcellation term set for which the parcellation term is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTermSet required: true ordinal: name: ordinal description: Ordinal of the parcellation term among other terms within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema range: integer minimum_value: 0 has_parent_parcellation_term: name: has_parent_parcellation_term description: Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm Induced name: ParcellationTerm description: A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. 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A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. URI: ANSRS:ParcellationTerm classDiagram class ParcellationTerm NamedThing <|-- ParcellationTerm ParcellationTerm : description ParcellationTerm : has_parent_parcellation_term ParcellationTerm --> ParcellationTerm : has_parent_parcellation_term ParcellationTerm : id ParcellationTerm : name ParcellationTerm : ordinal ParcellationTerm : part_of_parcellation_term_set ParcellationTerm --> ParcellationTermSet : part_of_parcellation_term_set ParcellationTerm : symbol","title":"Class: ParcellationTerm"},{"location":"ParcellationTerm/#inheritance","text":"NamedThing ParcellationTerm","title":"Inheritance"},{"location":"ParcellationTerm/#slots","text":"Name Cardinality and Range Description Inheritance symbol 0..1 String Symbol representing a parcellation term direct part_of_parcellation_term_set 1..1 ParcellationTermSet Reference to the parcellation term set for which the parcellation term is par... direct ordinal 0..1 Integer Ordinal of the parcellation term among other terms within the context of the ... direct has_parent_parcellation_term 0..1 ParcellationTerm Reference to the parent parcellation term for which the parcellation term is ... direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationTerm/#usages","text":"used by used in type used ParcellationTerm has_parent_parcellation_term range ParcellationTerm ParcellationColorAssignment subject_parcellation_term range ParcellationTerm ParcellationAnnotationTermMap subject_parcellation_term range ParcellationTerm","title":"Usages"},{"location":"ParcellationTerm/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationTerm/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationTerm/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationTerm native ANSRS:ParcellationTerm","title":"Mappings"},{"location":"ParcellationTerm/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationTerm/#direct","text":"name: ParcellationTerm description: A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: symbol: name: symbol description: Symbol representing a parcellation term. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 part_of_parcellation_term_set: name: part_of_parcellation_term_set description: Reference to the parcellation term set for which the parcellation term is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTermSet required: true ordinal: name: ordinal description: Ordinal of the parcellation term among other terms within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema range: integer minimum_value: 0 has_parent_parcellation_term: name: has_parent_parcellation_term description: Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm","title":"Direct"},{"location":"ParcellationTerm/#induced","text":"name: ParcellationTerm description: A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: symbol: name: symbol description: Symbol representing a parcellation term. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: symbol owner: ParcellationTerm domain_of: - ParcellationTerm range: string part_of_parcellation_term_set: name: part_of_parcellation_term_set description: Reference to the parcellation term set for which the parcellation term is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_term_set owner: ParcellationTerm domain_of: - ParcellationTerm range: ParcellationTermSet required: true ordinal: name: ordinal description: Ordinal of the parcellation term among other terms within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema alias: ordinal owner: ParcellationTerm domain_of: - ParcellationTermSet - ParcellationTerm range: integer minimum_value: 0 has_parent_parcellation_term: name: has_parent_parcellation_term description: Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term owner: ParcellationTerm domain_of: - ParcellationTerm range: ParcellationTerm id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTerm domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTerm domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTerm domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"ParcellationTermSet/","text":"Class: ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. URI: ANSRS:ParcellationTermSet classDiagram class ParcellationTermSet NamedThing <|-- ParcellationTermSet ParcellationTermSet : description ParcellationTermSet : has_parent_parcellation_term_set ParcellationTermSet --> ParcellationTermSet : has_parent_parcellation_term_set ParcellationTermSet : id ParcellationTermSet : name ParcellationTermSet : ordinal ParcellationTermSet : part_of_parcellation_terminology ParcellationTermSet --> ParcellationTerminology : part_of_parcellation_terminology Inheritance NamedThing ParcellationTermSet Slots Name Cardinality and Range Description Inheritance part_of_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology for which the parcellation term set... direct ordinal 0..1 Integer Ordinal of the parcellation term set among other term sets within the context... direct has_parent_parcellation_term_set 0..1 ParcellationTermSet Reference to the parent parcellation term set for which the parcellation term... direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationTermSet has_parent_parcellation_term_set range ParcellationTermSet ParcellationTerm part_of_parcellation_term_set range ParcellationTermSet Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationTermSet native ANSRS:ParcellationTermSet LinkML Source Direct name: ParcellationTermSet description: A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTermSet Induced name: ParcellationTermSet description: A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_terminology owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: ordinal owner: ParcellationTermSet domain_of: - ParcellationTermSet - ParcellationTerm range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term_set owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTermSet id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTermSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTermSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTermSet domain_of: - NamedThing range: string required: true","title":"Class: ParcellationTermSet"},{"location":"ParcellationTermSet/#class-parcellationtermset","text":"A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. URI: ANSRS:ParcellationTermSet classDiagram class ParcellationTermSet NamedThing <|-- ParcellationTermSet ParcellationTermSet : description ParcellationTermSet : has_parent_parcellation_term_set ParcellationTermSet --> ParcellationTermSet : has_parent_parcellation_term_set ParcellationTermSet : id ParcellationTermSet : name ParcellationTermSet : ordinal ParcellationTermSet : part_of_parcellation_terminology ParcellationTermSet --> ParcellationTerminology : part_of_parcellation_terminology","title":"Class: ParcellationTermSet"},{"location":"ParcellationTermSet/#inheritance","text":"NamedThing ParcellationTermSet","title":"Inheritance"},{"location":"ParcellationTermSet/#slots","text":"Name Cardinality and Range Description Inheritance part_of_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology for which the parcellation term set... direct ordinal 0..1 Integer Ordinal of the parcellation term set among other term sets within the context... direct has_parent_parcellation_term_set 0..1 ParcellationTermSet Reference to the parent parcellation term set for which the parcellation term... direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationTermSet/#usages","text":"used by used in type used ParcellationTermSet has_parent_parcellation_term_set range ParcellationTermSet ParcellationTerm part_of_parcellation_term_set range ParcellationTermSet","title":"Usages"},{"location":"ParcellationTermSet/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationTermSet/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationTermSet/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationTermSet native ANSRS:ParcellationTermSet","title":"Mappings"},{"location":"ParcellationTermSet/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationTermSet/#direct","text":"name: ParcellationTermSet description: A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTermSet","title":"Direct"},{"location":"ParcellationTermSet/#induced","text":"name: ParcellationTermSet description: A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_terminology owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: ordinal owner: ParcellationTermSet domain_of: - ParcellationTermSet - ParcellationTerm range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term_set owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTermSet id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTermSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTermSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTermSet domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"ParcellationTerminology/","text":"Class: ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) URI: ANSRS:ParcellationTerminology classDiagram class ParcellationTerminology VersionedNamedThing <|-- ParcellationTerminology ParcellationTerminology : description ParcellationTerminology : id ParcellationTerminology : name ParcellationTerminology : revision_of ParcellationTerminology --> ParcellationTerminology : revision_of ParcellationTerminology : version Inheritance NamedThing VersionedNamedThing ParcellationTerminology Slots Name Cardinality and Range Description Inheritance version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationTerminology revision_of range ParcellationTerminology ParcellationTermSet part_of_parcellation_terminology range ParcellationTerminology ParcellationColorScheme subject_parcellation_terminology range ParcellationTerminology ParcellationColorScheme revision_of range ParcellationTerminology AnatomicalAnnotationSet revision_of range ParcellationTerminology ParcellationAtlas has_parcellation_terminology range ParcellationTerminology Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationTerminology native ANSRS:ParcellationTerminology LinkML Source Direct name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology Induced name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationTerminology domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationTerminology domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTerminology domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTerminology domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTerminology domain_of: - NamedThing range: string required: true","title":"Class: ParcellationTerminology"},{"location":"ParcellationTerminology/#class-parcellationterminology","text":"A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) URI: ANSRS:ParcellationTerminology classDiagram class ParcellationTerminology VersionedNamedThing <|-- ParcellationTerminology ParcellationTerminology : description ParcellationTerminology : id ParcellationTerminology : name ParcellationTerminology : revision_of ParcellationTerminology --> ParcellationTerminology : revision_of ParcellationTerminology : version","title":"Class: ParcellationTerminology"},{"location":"ParcellationTerminology/#inheritance","text":"NamedThing VersionedNamedThing ParcellationTerminology","title":"Inheritance"},{"location":"ParcellationTerminology/#slots","text":"Name Cardinality and Range Description Inheritance version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationTerminology/#usages","text":"used by used in type used ParcellationTerminology revision_of range ParcellationTerminology ParcellationTermSet part_of_parcellation_terminology range ParcellationTerminology ParcellationColorScheme subject_parcellation_terminology range ParcellationTerminology ParcellationColorScheme revision_of range ParcellationTerminology AnatomicalAnnotationSet revision_of range ParcellationTerminology ParcellationAtlas has_parcellation_terminology range ParcellationTerminology","title":"Usages"},{"location":"ParcellationTerminology/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationTerminology/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationTerminology/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationTerminology native ANSRS:ParcellationTerminology","title":"Mappings"},{"location":"ParcellationTerminology/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationTerminology/#direct","text":"name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology","title":"Direct"},{"location":"ParcellationTerminology/#induced","text":"name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationTerminology domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationTerminology domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTerminology domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTerminology domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTerminology domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Uri/","text":"Type: Uri a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str Comments in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str","title":"Type: Uri"},{"location":"Uri/#comments","text":"in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node","title":"Comments"},{"location":"Uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uri/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Uriorcurie/","text":"Type: Uriorcurie a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uriorcurie/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"VersionedNamedThing/","text":"Class: VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:VersionedNamedThing classDiagram class VersionedNamedThing NamedThing <|-- VersionedNamedThing VersionedNamedThing <|-- ImageDataset VersionedNamedThing <|-- AnatomicalSpace VersionedNamedThing <|-- ParcellationTerminology VersionedNamedThing <|-- ParcellationColorScheme VersionedNamedThing <|-- AnatomicalAnnotationSet VersionedNamedThing <|-- ParcellationAtlas VersionedNamedThing : description VersionedNamedThing : id VersionedNamedThing : name VersionedNamedThing : revision_of VersionedNamedThing --> VersionedNamedThing : revision_of VersionedNamedThing : version Inheritance NamedThing VersionedNamedThing ImageDataset AnatomicalSpace ParcellationTerminology ParcellationColorScheme AnatomicalAnnotationSet ParcellationAtlas Slots Name Cardinality and Range Description Inheritance version 1..1 String direct revision_of 0..1 VersionedNamedThing direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used VersionedNamedThing revision_of range VersionedNamedThing Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:VersionedNamedThing native ANSRS:VersionedNamedThing LinkML Source Direct name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true slots: - version - revision_of Induced name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: VersionedNamedThing domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: VersionedNamedThing domain_of: - VersionedNamedThing range: VersionedNamedThing id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: VersionedNamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: VersionedNamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: VersionedNamedThing domain_of: - NamedThing range: string required: true","title":"Class: VersionedNamedThing"},{"location":"VersionedNamedThing/#class-versionednamedthing","text":"Core base entity for ANSRS schema representing an versioned named thing. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:VersionedNamedThing classDiagram class VersionedNamedThing NamedThing <|-- VersionedNamedThing VersionedNamedThing <|-- ImageDataset VersionedNamedThing <|-- AnatomicalSpace VersionedNamedThing <|-- ParcellationTerminology VersionedNamedThing <|-- ParcellationColorScheme VersionedNamedThing <|-- AnatomicalAnnotationSet VersionedNamedThing <|-- ParcellationAtlas VersionedNamedThing : description VersionedNamedThing : id VersionedNamedThing : name VersionedNamedThing : revision_of VersionedNamedThing --> VersionedNamedThing : revision_of VersionedNamedThing : version","title":"Class: VersionedNamedThing"},{"location":"VersionedNamedThing/#inheritance","text":"NamedThing VersionedNamedThing ImageDataset AnatomicalSpace ParcellationTerminology ParcellationColorScheme AnatomicalAnnotationSet ParcellationAtlas","title":"Inheritance"},{"location":"VersionedNamedThing/#slots","text":"Name Cardinality and Range Description Inheritance version 1..1 String direct revision_of 0..1 VersionedNamedThing direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"VersionedNamedThing/#usages","text":"used by used in type used VersionedNamedThing revision_of range VersionedNamedThing","title":"Usages"},{"location":"VersionedNamedThing/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"VersionedNamedThing/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"VersionedNamedThing/#mappings","text":"Mapping Type Mapped Value self ANSRS:VersionedNamedThing native ANSRS:VersionedNamedThing","title":"Mappings"},{"location":"VersionedNamedThing/#linkml-source","text":"","title":"LinkML Source"},{"location":"VersionedNamedThing/#direct","text":"name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true slots: - version - revision_of","title":"Direct"},{"location":"VersionedNamedThing/#induced","text":"name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: VersionedNamedThing domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: VersionedNamedThing domain_of: - VersionedNamedThing range: VersionedNamedThing id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: VersionedNamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: VersionedNamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: VersionedNamedThing domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"about/","text":"ansrs-schema Schema for ANSRS","title":"About"},{"location":"about/#ansrs-schema","text":"Schema for ANSRS","title":"ansrs-schema"},{"location":"ansrs-schema/","text":"ansrs-schema Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema","title":"ansrs-schema"},{"location":"ansrs-schema/#ansrs-schema","text":"Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema","title":"ansrs-schema"},{"location":"color/","text":"Slot: color A string representing to hex triplet code of a color URI: ANSRS:color Applicable Classes Name Description Modifies Slot ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellatio... no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Slot: color"},{"location":"color/#slot-color","text":"A string representing to hex triplet code of a color URI: ANSRS:color","title":"Slot: color"},{"location":"color/#applicable-classes","text":"Name Description Modifies Slot ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellatio... no","title":"Applicable Classes"},{"location":"color/#properties","text":"Range: String","title":"Properties"},{"location":"color/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"color/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"color/#linkml-source","text":"name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"LinkML Source"},{"location":"description/","text":"Slot: description URI: ANSRS:description Applicable Classes Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description domain_of: - NamedThing range: string required: true","title":"Slot: description"},{"location":"description/#slot-description","text":"URI: ANSRS:description","title":"Slot: description"},{"location":"description/#applicable-classes","text":"Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no","title":"Applicable Classes"},{"location":"description/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"description/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"description/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"description/#linkml-source","text":"name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description domain_of: - NamedThing range: string required: true","title":"LinkML Source"},{"location":"has_anatomical_annotation_set/","text":"Slot: has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atlas URI: ANSRS:has_anatomical_annotation_set Applicable Classes Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no Properties Range: AnatomicalAnnotationSet Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true","title":"Slot: has_anatomical_annotation_set"},{"location":"has_anatomical_annotation_set/#slot-has_anatomical_annotation_set","text":"Reference to the anatomical annotation set component of the parcellation atlas URI: ANSRS:has_anatomical_annotation_set","title":"Slot: has_anatomical_annotation_set"},{"location":"has_anatomical_annotation_set/#applicable-classes","text":"Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no","title":"Applicable Classes"},{"location":"has_anatomical_annotation_set/#properties","text":"Range: AnatomicalAnnotationSet Required: True","title":"Properties"},{"location":"has_anatomical_annotation_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_anatomical_annotation_set/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_anatomical_annotation_set/#linkml-source","text":"name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true","title":"LinkML Source"},{"location":"has_anatomical_space/","text":"Slot: has_anatomical_space Reference to the anatomical space component of the parcellation atlas URI: ANSRS:has_anatomical_space Applicable Classes Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no Properties Range: AnatomicalSpace Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true","title":"Slot: has_anatomical_space"},{"location":"has_anatomical_space/#slot-has_anatomical_space","text":"Reference to the anatomical space component of the parcellation atlas URI: ANSRS:has_anatomical_space","title":"Slot: has_anatomical_space"},{"location":"has_anatomical_space/#applicable-classes","text":"Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no","title":"Applicable Classes"},{"location":"has_anatomical_space/#properties","text":"Range: AnatomicalSpace Required: True","title":"Properties"},{"location":"has_anatomical_space/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_anatomical_space/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_anatomical_space/#linkml-source","text":"name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true","title":"LinkML Source"},{"location":"has_parcellation_terminology/","text":"Slot: has_parcellation_terminology Reference to the parcellation terminology component of the parcellation atlas URI: ANSRS:has_parcellation_terminology Applicable Classes Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no Properties Range: ParcellationTerminology Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true","title":"Slot: has_parcellation_terminology"},{"location":"has_parcellation_terminology/#slot-has_parcellation_terminology","text":"Reference to the parcellation terminology component of the parcellation atlas URI: ANSRS:has_parcellation_terminology","title":"Slot: has_parcellation_terminology"},{"location":"has_parcellation_terminology/#applicable-classes","text":"Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no","title":"Applicable Classes"},{"location":"has_parcellation_terminology/#properties","text":"Range: ParcellationTerminology Required: True","title":"Properties"},{"location":"has_parcellation_terminology/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_parcellation_terminology/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_parcellation_terminology/#linkml-source","text":"name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true","title":"LinkML Source"},{"location":"has_parent_parcellation_term/","text":"Slot: has_parent_parcellation_term Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of URI: ANSRS:has_parent_parcellation_term Applicable Classes Name Description Modifies Slot ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no Properties Range: ParcellationTerm Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_parent_parcellation_term description: Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term owner: ParcellationTerm domain_of: - ParcellationTerm range: ParcellationTerm","title":"Slot: has_parent_parcellation_term"},{"location":"has_parent_parcellation_term/#slot-has_parent_parcellation_term","text":"Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of URI: ANSRS:has_parent_parcellation_term","title":"Slot: has_parent_parcellation_term"},{"location":"has_parent_parcellation_term/#applicable-classes","text":"Name Description Modifies Slot ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no","title":"Applicable Classes"},{"location":"has_parent_parcellation_term/#properties","text":"Range: ParcellationTerm","title":"Properties"},{"location":"has_parent_parcellation_term/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_parent_parcellation_term/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_parent_parcellation_term/#linkml-source","text":"name: has_parent_parcellation_term description: Reference to the parent parcellation term for which the parcellation term is a child ( spatially part) of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term owner: ParcellationTerm domain_of: - ParcellationTerm range: ParcellationTerm","title":"LinkML Source"},{"location":"has_parent_parcellation_term_set/","text":"Slot: has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. URI: ANSRS:has_parent_parcellation_term_set Applicable Classes Name Description Modifies Slot ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no Properties Range: ParcellationTermSet Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term_set owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTermSet","title":"Slot: has_parent_parcellation_term_set"},{"location":"has_parent_parcellation_term_set/#slot-has_parent_parcellation_term_set","text":"Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. URI: ANSRS:has_parent_parcellation_term_set","title":"Slot: has_parent_parcellation_term_set"},{"location":"has_parent_parcellation_term_set/#applicable-classes","text":"Name Description Modifies Slot ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no","title":"Applicable Classes"},{"location":"has_parent_parcellation_term_set/#properties","text":"Range: ParcellationTermSet","title":"Properties"},{"location":"has_parent_parcellation_term_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_parent_parcellation_term_set/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_parent_parcellation_term_set/#linkml-source","text":"name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term_set owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTermSet","title":"LinkML Source"},{"location":"id/","text":"Slot: id URI: ANSRS:id Applicable Classes Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id domain_of: - NamedThing range: uriorcurie required: true","title":"Slot: id"},{"location":"id/#slot-id","text":"URI: ANSRS:id","title":"Slot: id"},{"location":"id/#applicable-classes","text":"Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no","title":"Applicable Classes"},{"location":"id/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"id/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"id/#linkml-source","text":"name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id domain_of: - 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ParcellationTermSet - ParcellationTerm range: string","title":"LinkML Source"},{"location":"parameterizes/","text":"Slot: parameterizes Reference to the anatomical space for which the anatomical annotation set is anchored URI: ANSRS:parameterizes Applicable Classes Name Description Modifies Slot AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no Properties Range: AnatomicalSpace Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true","title":"Slot: parameterizes"},{"location":"parameterizes/#slot-parameterizes","text":"Reference to the anatomical space for which the anatomical annotation set is anchored URI: ANSRS:parameterizes","title":"Slot: parameterizes"},{"location":"parameterizes/#applicable-classes","text":"Name Description Modifies Slot AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no","title":"Applicable Classes"},{"location":"parameterizes/#properties","text":"Range: AnatomicalSpace Required: True","title":"Properties"},{"location":"parameterizes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parameterizes/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"parameterizes/#linkml-source","text":"name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true","title":"LinkML Source"},{"location":"part_of_anatomical_annotation_set/","text":"Slot: part_of_anatomical_annotation_set URI: ANSRS:part_of_anatomical_annotation_set Applicable Classes Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no Properties Range: AnatomicalAnnotationSet Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true","title":"Slot: part_of_anatomical_annotation_set"},{"location":"part_of_anatomical_annotation_set/#slot-part_of_anatomical_annotation_set","text":"URI: ANSRS:part_of_anatomical_annotation_set","title":"Slot: part_of_anatomical_annotation_set"},{"location":"part_of_anatomical_annotation_set/#applicable-classes","text":"Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no","title":"Applicable Classes"},{"location":"part_of_anatomical_annotation_set/#properties","text":"Range: AnatomicalAnnotationSet Required: True","title":"Properties"},{"location":"part_of_anatomical_annotation_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"part_of_anatomical_annotation_set/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"part_of_anatomical_annotation_set/#linkml-source","text":"name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true","title":"LinkML Source"},{"location":"part_of_parcellation_color_scheme/","text":"Slot: part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is part of. 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ParcellationTerm A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. Slots Slot Description color A string representing to hex triplet code of a color description has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atla... has_anatomical_space Reference to the anatomical space component of the parcellation atlas has_parcellation_terminology Reference to the parcellation terminology component of the parcellation atlas has_parent_parcellation_term Reference to the parent parcellation term for which the parcellation term is ... has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term... id internal_identifier An identifier that uniquely denotes a specific parcellation annotation within... measures Reference to the specific image dataset used to define the anatomical space name ordinal Ordinal of the parcellation term set among other term sets within the context... parameterizes Reference to the anatomical space for which the anatomical annotation set is ... part_of_anatomical_annotation_set part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is ... part_of_parcellation_term_set Reference to the parcellation term set for which the parcellation term is par... part_of_parcellation_terminology Reference to the parcellation terminology for which the parcellation term set... revision_of specialization_of Reference to the general (non versioned) parcellation atlas for which the par... subject_parcellation_annotation Reference to the parcellation annotation that is the subject of the associati... subject_parcellation_term Reference to the parcellation term identifier for which the color assignment ... subject_parcellation_terminology Reference to the parcellation terminology for which the parcellation color sc... symbol Symbol representing a parcellation term unit A controlled vocabulary attribute defining the length unit of the x, y, and z... version voxel_count The number of voxels (3D pixels) spanned by the parcellation annotation (opti... x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... x_resolution The resolution (length / pixel) in along the x axis (numerical value part) x_size The number of pixels/voxels (size) along the x axis y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... y_resolution The resolution (length / pixel) in along the y axis (numerical value part) y_size The number of pixels/voxels (size) along the y axis z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... z_resolution The resolution (length / pixel) in along the z axis (numerical value part) z_size The number of pixels/voxels (size) along the y axis Enumerations Enumeration Description ANATOMICALDIRECTION A controlled vocabulary term defining axis direction in terms of anatomical d... DISTANCEUNIT Types Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE Subsets Subset Description","title":"Index"},{"location":"#ansrs-schema","text":"Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema Name: ansrs-schema","title":"ANSRS schema"},{"location":"#classes","text":"Class Description NamedThing Core base entity for ANSRS schema representing an entity with an identifier name and description. ParcellationTerm A parcellation term is an individual term within a specific parcellation terminology describing a single anatomical entity by a persistent identifier, name, symbol and description. A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to.","title":"Classes"},{"location":"#slots","text":"Slot Description color A string representing to hex triplet code of a color description has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atla... has_anatomical_space Reference to the anatomical space component of the parcellation atlas has_parcellation_terminology Reference to the parcellation terminology component of the parcellation atlas has_parent_parcellation_term Reference to the parent parcellation term for which the parcellation term is ... has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term... id internal_identifier An identifier that uniquely denotes a specific parcellation annotation within... measures Reference to the specific image dataset used to define the anatomical space name ordinal Ordinal of the parcellation term set among other term sets within the context... parameterizes Reference to the anatomical space for which the anatomical annotation set is ... part_of_anatomical_annotation_set part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is ... part_of_parcellation_term_set Reference to the parcellation term set for which the parcellation term is par... part_of_parcellation_terminology Reference to the parcellation terminology for which the parcellation term set... revision_of specialization_of Reference to the general (non versioned) parcellation atlas for which the par... subject_parcellation_annotation Reference to the parcellation annotation that is the subject of the associati... subject_parcellation_term Reference to the parcellation term identifier for which the color assignment ... subject_parcellation_terminology Reference to the parcellation terminology for which the parcellation color sc... symbol Symbol representing a parcellation term unit A controlled vocabulary attribute defining the length unit of the x, y, and z... version voxel_count The number of voxels (3D pixels) spanned by the parcellation annotation (opti... x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... x_resolution The resolution (length / pixel) in along the x axis (numerical value part) x_size The number of pixels/voxels (size) along the x axis y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... y_resolution The resolution (length / pixel) in along the y axis (numerical value part) y_size The number of pixels/voxels (size) along the y axis z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... z_resolution The resolution (length / pixel) in along the z axis (numerical value part) z_size The number of pixels/voxels (size) along the y axis","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description ANATOMICALDIRECTION A controlled vocabulary term defining axis direction in terms of anatomical d... DISTANCEUNIT","title":"Enumerations"},{"location":"#types","text":"Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE","title":"Types"},{"location":"#subsets","text":"Subset Description","title":"Subsets"},{"location":"ANATOMICALDIRECTION/","text":"Enum: ANATOMICALDIRECTION A controlled vocabulary term defining axis direction in terms of anatomical direction. URI: ANATOMICALDIRECTION Permissible Values Value Meaning Description left_to_right None posterior_to_anterior None inferior_to_superior None Slots Name Description x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... z_direction A controlled vocabulary attribute defining the z axis direction in terms of a... Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: ANATOMICAL_DIRECTION description: A controlled vocabulary term defining axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: left_to_right: text: left_to_right title: left-to-right posterior_to_anterior: text: posterior_to_anterior title: posterior-to-anterior inferior_to_superior: text: inferior_to_superior title: inferior-to-superior","title":"Enum: ANATOMICALDIRECTION"},{"location":"ANATOMICALDIRECTION/#enum-anatomicaldirection","text":"A controlled vocabulary term defining axis direction in terms of anatomical direction. URI: ANATOMICALDIRECTION","title":"Enum: ANATOMICALDIRECTION"},{"location":"ANATOMICALDIRECTION/#permissible-values","text":"Value Meaning Description left_to_right None posterior_to_anterior None inferior_to_superior None","title":"Permissible Values"},{"location":"ANATOMICALDIRECTION/#slots","text":"Name Description x_direction A controlled vocabulary attribute defining the x axis direction in terms of a... y_direction A controlled vocabulary attribute defining the y axis direction in terms of a... z_direction A controlled vocabulary attribute defining the z axis direction in terms of a...","title":"Slots"},{"location":"ANATOMICALDIRECTION/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ANATOMICALDIRECTION/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ANATOMICALDIRECTION/#linkml-source","text":"name: ANATOMICAL_DIRECTION description: A controlled vocabulary term defining axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: left_to_right: text: left_to_right title: left-to-right posterior_to_anterior: text: posterior_to_anterior title: posterior-to-anterior inferior_to_superior: text: inferior_to_superior title: inferior-to-superior","title":"LinkML Source"},{"location":"AnatomicalAnnotationSet/","text":"Class: AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) URI: ANSRS:AnatomicalAnnotationSet classDiagram class AnatomicalAnnotationSet VersionedNamedThing <|-- AnatomicalAnnotationSet AnatomicalAnnotationSet : description AnatomicalAnnotationSet : id AnatomicalAnnotationSet : name AnatomicalAnnotationSet : parameterizes AnatomicalAnnotationSet --> AnatomicalSpace : parameterizes AnatomicalAnnotationSet : revision_of AnatomicalAnnotationSet --> ParcellationTerminology : revision_of AnatomicalAnnotationSet : version Inheritance NamedThing VersionedNamedThing AnatomicalAnnotationSet Slots Name Cardinality and Range Description Inheritance parameterizes 1..1 AnatomicalSpace Reference to the anatomical space for which the anatomical annotation set is ... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationAnnotation part_of_anatomical_annotation_set range AnatomicalAnnotationSet ParcellationAtlas has_anatomical_annotation_set range AnatomicalAnnotationSet Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:AnatomicalAnnotationSet native ANSRS:AnatomicalAnnotationSet LinkML Source Direct name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true Induced name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalAnnotationSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true","title":"Class: AnatomicalAnnotationSet"},{"location":"AnatomicalAnnotationSet/#class-anatomicalannotationset","text":"An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499) URI: ANSRS:AnatomicalAnnotationSet classDiagram class AnatomicalAnnotationSet VersionedNamedThing <|-- AnatomicalAnnotationSet AnatomicalAnnotationSet : description AnatomicalAnnotationSet : id AnatomicalAnnotationSet : name AnatomicalAnnotationSet : parameterizes AnatomicalAnnotationSet --> AnatomicalSpace : parameterizes AnatomicalAnnotationSet : revision_of AnatomicalAnnotationSet --> ParcellationTerminology : revision_of AnatomicalAnnotationSet : version","title":"Class: AnatomicalAnnotationSet"},{"location":"AnatomicalAnnotationSet/#inheritance","text":"NamedThing VersionedNamedThing AnatomicalAnnotationSet","title":"Inheritance"},{"location":"AnatomicalAnnotationSet/#slots","text":"Name Cardinality and Range Description Inheritance parameterizes 1..1 AnatomicalSpace Reference to the anatomical space for which the anatomical annotation set is ... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"AnatomicalAnnotationSet/#usages","text":"used by used in type used ParcellationAnnotation part_of_anatomical_annotation_set range AnatomicalAnnotationSet ParcellationAtlas has_anatomical_annotation_set range AnatomicalAnnotationSet","title":"Usages"},{"location":"AnatomicalAnnotationSet/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnatomicalAnnotationSet/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"AnatomicalAnnotationSet/#mappings","text":"Mapping Type Mapped Value self ANSRS:AnatomicalAnnotationSet native ANSRS:AnatomicalAnnotationSet","title":"Mappings"},{"location":"AnatomicalAnnotationSet/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnatomicalAnnotationSet/#direct","text":"name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true","title":"Direct"},{"location":"AnatomicalAnnotationSet/#induced","text":"name: AnatomicalAnnotationSet description: 'An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: parameterizes: name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalAnnotationSet domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalAnnotationSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalAnnotationSet domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"AnatomicalSpace/","text":"Class: AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) URI: ANSRS:AnatomicalSpace classDiagram class AnatomicalSpace VersionedNamedThing <|-- AnatomicalSpace AnatomicalSpace : description AnatomicalSpace : id AnatomicalSpace : measures AnatomicalSpace --> ImageDataset : measures AnatomicalSpace : name AnatomicalSpace : revision_of AnatomicalSpace --> AnatomicalSpace : revision_of AnatomicalSpace : version Inheritance NamedThing VersionedNamedThing AnatomicalSpace Slots Name Cardinality and Range Description Inheritance measures 1..1 ImageDataset Reference to the specific image dataset used to define the anatomical space direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used AnatomicalSpace revision_of range AnatomicalSpace AnatomicalAnnotationSet parameterizes range AnatomicalSpace ParcellationAtlas has_anatomical_space range AnatomicalSpace Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:AnatomicalSpace native ANSRS:AnatomicalSpace LinkML Source Direct name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ImageDataset required: true Induced name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: measures owner: AnatomicalSpace domain_of: - AnatomicalSpace range: ImageDataset required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalSpace domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalSpace domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalSpace domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalSpace domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalSpace domain_of: - NamedThing range: string required: true","title":"Class: AnatomicalSpace"},{"location":"AnatomicalSpace/#class-anatomicalspace","text":"An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499) URI: ANSRS:AnatomicalSpace classDiagram class AnatomicalSpace VersionedNamedThing <|-- AnatomicalSpace AnatomicalSpace : description AnatomicalSpace : id AnatomicalSpace : measures AnatomicalSpace --> ImageDataset : measures AnatomicalSpace : name AnatomicalSpace : revision_of AnatomicalSpace --> AnatomicalSpace : revision_of AnatomicalSpace : version","title":"Class: AnatomicalSpace"},{"location":"AnatomicalSpace/#inheritance","text":"NamedThing VersionedNamedThing AnatomicalSpace","title":"Inheritance"},{"location":"AnatomicalSpace/#slots","text":"Name Cardinality and Range Description Inheritance measures 1..1 ImageDataset Reference to the specific image dataset used to define the anatomical space direct version 1..1 String VersionedNamedThing revision_of 0..1 AnatomicalSpace VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"AnatomicalSpace/#usages","text":"used by used in type used AnatomicalSpace revision_of range AnatomicalSpace AnatomicalAnnotationSet parameterizes range AnatomicalSpace ParcellationAtlas has_anatomical_space range AnatomicalSpace","title":"Usages"},{"location":"AnatomicalSpace/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnatomicalSpace/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"AnatomicalSpace/#mappings","text":"Mapping Type Mapped Value self ANSRS:AnatomicalSpace native ANSRS:AnatomicalSpace","title":"Mappings"},{"location":"AnatomicalSpace/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnatomicalSpace/#direct","text":"name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ImageDataset required: true","title":"Direct"},{"location":"AnatomicalSpace/#induced","text":"name: AnatomicalSpace description: 'An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: AnatomicalSpace attributes: measures: name: measures description: Reference to the specific image dataset used to define the anatomical space. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: measures owner: AnatomicalSpace domain_of: - AnatomicalSpace range: ImageDataset required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: AnatomicalSpace domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: AnatomicalSpace domain_of: - VersionedNamedThing range: AnatomicalSpace id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: AnatomicalSpace domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: AnatomicalSpace domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: AnatomicalSpace domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DISTANCEUNIT/","text":"Enum: DISTANCEUNIT URI: DISTANCEUNIT Permissible Values Value Meaning Description mm None um None m None Slots Name Description unit A controlled vocabulary attribute defining the length unit of the x, y, and z... Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: DISTANCE_UNIT from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: mm: text: mm title: millimeter um: text: um title: micrometer m: text: m title: meter","title":"Enum: DISTANCEUNIT"},{"location":"DISTANCEUNIT/#enum-distanceunit","text":"URI: DISTANCEUNIT","title":"Enum: DISTANCEUNIT"},{"location":"DISTANCEUNIT/#permissible-values","text":"Value Meaning Description mm None um None m None","title":"Permissible Values"},{"location":"DISTANCEUNIT/#slots","text":"Name Description unit A controlled vocabulary attribute defining the length unit of the x, y, and z...","title":"Slots"},{"location":"DISTANCEUNIT/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DISTANCEUNIT/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DISTANCEUNIT/#linkml-source","text":"name: DISTANCE_UNIT from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 permissible_values: mm: text: mm title: millimeter um: text: um title: micrometer m: text: m title: meter","title":"LinkML Source"},{"location":"Date/","text":"Type: Date a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ImageDataset/","text":"Class: ImageDataset An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) URI: ANSRS:ImageDataset classDiagram class ImageDataset VersionedNamedThing <|-- ImageDataset ImageDataset : description ImageDataset : id ImageDataset : name ImageDataset : revision_of ImageDataset --> ImageDataset : revision_of ImageDataset : unit ImageDataset --> DISTANCE_UNIT : unit ImageDataset : version ImageDataset : x_direction ImageDataset --> ANATOMICAL_DIRECTION : x_direction ImageDataset : x_resolution ImageDataset : x_size ImageDataset : y_direction ImageDataset --> ANATOMICAL_DIRECTION : y_direction ImageDataset : y_resolution ImageDataset : y_size ImageDataset : z_direction ImageDataset --> ANATOMICAL_DIRECTION : z_direction ImageDataset : z_resolution ImageDataset : z_size Inheritance NamedThing VersionedNamedThing ImageDataset Slots Name Cardinality and Range Description Inheritance x_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the x axis direction in terms of a... direct y_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the y axis direction in terms of a... direct z_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the z axis direction in terms of a... direct x_size 0..1 Integer The number of pixels/voxels (size) along the x axis direct y_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct z_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct x_resolution 0..1 Float The resolution (length / pixel) in along the x axis (numerical value part) direct y_resolution 0..1 Float The resolution (length / pixel) in along the y axis (numerical value part) direct z_resolution 0..1 Float The resolution (length / pixel) in along the z axis (numerical value part) direct unit 0..1 DISTANCEUNIT A controlled vocabulary attribute defining the length unit of the x, y, and z... direct version 1..1 String VersionedNamedThing revision_of 0..1 ImageDataset VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ImageDataset revision_of range ImageDataset AnatomicalSpace measures range ImageDataset Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ImageDataset native ANSRS:ImageDataset LinkML Source Direct name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: DISTANCE_UNIT Induced name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: unit owner: ImageDataset domain_of: - ImageDataset range: DISTANCE_UNIT version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ImageDataset domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ImageDataset domain_of: - VersionedNamedThing range: ImageDataset id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ImageDataset domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ImageDataset domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ImageDataset domain_of: - NamedThing range: string required: true","title":"Class: ImageDataset"},{"location":"ImageDataset/#class-imagedataset","text":"An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266) URI: ANSRS:ImageDataset classDiagram class ImageDataset VersionedNamedThing <|-- ImageDataset ImageDataset : description ImageDataset : id ImageDataset : name ImageDataset : revision_of ImageDataset --> ImageDataset : revision_of ImageDataset : unit ImageDataset --> DISTANCE_UNIT : unit ImageDataset : version ImageDataset : x_direction ImageDataset --> ANATOMICAL_DIRECTION : x_direction ImageDataset : x_resolution ImageDataset : x_size ImageDataset : y_direction ImageDataset --> ANATOMICAL_DIRECTION : y_direction ImageDataset : y_resolution ImageDataset : y_size ImageDataset : z_direction ImageDataset --> ANATOMICAL_DIRECTION : z_direction ImageDataset : z_resolution ImageDataset : z_size","title":"Class: ImageDataset"},{"location":"ImageDataset/#inheritance","text":"NamedThing VersionedNamedThing ImageDataset","title":"Inheritance"},{"location":"ImageDataset/#slots","text":"Name Cardinality and Range Description Inheritance x_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the x axis direction in terms of a... direct y_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the y axis direction in terms of a... direct z_direction 0..1 ANATOMICALDIRECTION A controlled vocabulary attribute defining the z axis direction in terms of a... direct x_size 0..1 Integer The number of pixels/voxels (size) along the x axis direct y_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct z_size 0..1 Integer The number of pixels/voxels (size) along the y axis direct x_resolution 0..1 Float The resolution (length / pixel) in along the x axis (numerical value part) direct y_resolution 0..1 Float The resolution (length / pixel) in along the y axis (numerical value part) direct z_resolution 0..1 Float The resolution (length / pixel) in along the z axis (numerical value part) direct unit 0..1 DISTANCEUNIT A controlled vocabulary attribute defining the length unit of the x, y, and z... direct version 1..1 String VersionedNamedThing revision_of 0..1 ImageDataset VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ImageDataset/#usages","text":"used by used in type used ImageDataset revision_of range ImageDataset AnatomicalSpace measures range ImageDataset","title":"Usages"},{"location":"ImageDataset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ImageDataset/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ImageDataset/#mappings","text":"Mapping Type Mapped Value self ANSRS:ImageDataset native ANSRS:ImageDataset","title":"Mappings"},{"location":"ImageDataset/#linkml-source","text":"","title":"LinkML Source"},{"location":"ImageDataset/#direct","text":"name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: DISTANCE_UNIT","title":"Direct"},{"location":"ImageDataset/#induced","text":"name: ImageDataset description: 'An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ImageDataset attributes: x_direction: name: x_direction description: A controlled vocabulary attribute defining the x axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION y_direction: name: y_direction description: A controlled vocabulary attribute defining the y axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION z_direction: name: z_direction description: A controlled vocabulary attribute defining the z axis direction in terms of anatomical direction. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_direction owner: ImageDataset domain_of: - ImageDataset range: ANATOMICAL_DIRECTION x_size: name: x_size description: The number of pixels/voxels (size) along the x axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 y_size: name: y_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 z_size: name: z_size description: The number of pixels/voxels (size) along the y axis. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_size owner: ImageDataset domain_of: - ImageDataset range: integer minimum_value: 1 x_resolution: name: x_resolution description: The resolution (length / pixel) in along the x axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: x_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' y_resolution: name: y_resolution description: The resolution (length / pixel) in along the y axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: y_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' z_resolution: name: z_resolution description: The resolution (length / pixel) in along the z axis (numerical value part). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: z_resolution owner: ImageDataset domain_of: - ImageDataset range: float structured_pattern: syntax: '{PositiveFloat}' unit: name: unit description: A controlled vocabulary attribute defining the length unit of the x, y, and z resolution values. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: unit owner: ImageDataset domain_of: - ImageDataset range: DISTANCE_UNIT version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ImageDataset domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ImageDataset domain_of: - VersionedNamedThing range: ImageDataset id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ImageDataset domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ImageDataset domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ImageDataset domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"NamedThing/","text":"Class: NamedThing Core base entity for ANSRS schema representing an entity with an identifier name and description. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:NamedThing classDiagram class NamedThing NamedThing <|-- ParcellationTermSet NamedThing <|-- ParcellationTerm NamedThing <|-- VersionedNamedThing NamedThing : description NamedThing : id NamedThing : name Inheritance NamedThing ParcellationTermSet ParcellationTerm VersionedNamedThing Slots Name Cardinality and Range Description Inheritance id 1..1 Uriorcurie direct name 1..1 String direct description 1..1 String direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:NamedThing native ANSRS:NamedThing LinkML Source Direct name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true slots: - id - name - description Induced name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true attributes: id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: NamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: NamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: NamedThing domain_of: - NamedThing range: string required: true","title":"Class: NamedThing"},{"location":"NamedThing/#class-namedthing","text":"Core base entity for ANSRS schema representing an entity with an identifier name and description. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:NamedThing classDiagram class NamedThing NamedThing <|-- ParcellationTermSet NamedThing <|-- ParcellationTerm NamedThing <|-- VersionedNamedThing NamedThing : description NamedThing : id NamedThing : name","title":"Class: NamedThing"},{"location":"NamedThing/#inheritance","text":"NamedThing ParcellationTermSet ParcellationTerm VersionedNamedThing","title":"Inheritance"},{"location":"NamedThing/#slots","text":"Name Cardinality and Range Description Inheritance id 1..1 Uriorcurie direct name 1..1 String direct description 1..1 String direct","title":"Slots"},{"location":"NamedThing/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"NamedThing/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"NamedThing/#mappings","text":"Mapping Type Mapped Value self ANSRS:NamedThing native ANSRS:NamedThing","title":"Mappings"},{"location":"NamedThing/#linkml-source","text":"","title":"LinkML Source"},{"location":"NamedThing/#direct","text":"name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true slots: - id - name - description","title":"Direct"},{"location":"NamedThing/#induced","text":"name: NamedThing description: Core base entity for ANSRS schema representing an entity with an identifier name and description. from_schema: https://w3id.org/my-org/ansrs-schema abstract: true attributes: id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: NamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: NamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: NamedThing domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotation/","text":"Class: ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. URI: ANSRS:ParcellationAnnotation classDiagram class ParcellationAnnotation ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation --> AnatomicalAnnotationSet : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count Slots Name Cardinality and Range Description Inheritance part_of_anatomical_annotation_set 1..1 AnatomicalAnnotationSet direct internal_identifier 1..1 String An identifier that uniquely denotes a specific parcellation annotation within... direct voxel_count 0..1 Integer The number of voxels (3D pixels) spanned by the parcellation annotation (opti... direct Usages used by used in type used ParcellationAnnotationTermMap subject_parcellation_annotation range ParcellationAnnotation Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAnnotation native ANSRS:ParcellationAnnotation LinkML Source Direct name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0 Induced name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: voxel_count owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: integer minimum_value: 0","title":"Class: ParcellationAnnotation"},{"location":"ParcellationAnnotation/#class-parcellationannotation","text":"A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. URI: ANSRS:ParcellationAnnotation classDiagram class ParcellationAnnotation ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation --> AnatomicalAnnotationSet : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count","title":"Class: ParcellationAnnotation"},{"location":"ParcellationAnnotation/#slots","text":"Name Cardinality and Range Description Inheritance part_of_anatomical_annotation_set 1..1 AnatomicalAnnotationSet direct internal_identifier 1..1 String An identifier that uniquely denotes a specific parcellation annotation within... direct voxel_count 0..1 Integer The number of voxels (3D pixels) spanned by the parcellation annotation (opti... direct","title":"Slots"},{"location":"ParcellationAnnotation/#usages","text":"used by used in type used ParcellationAnnotationTermMap subject_parcellation_annotation range ParcellationAnnotation","title":"Usages"},{"location":"ParcellationAnnotation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAnnotation/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotation/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAnnotation native ANSRS:ParcellationAnnotation","title":"Mappings"},{"location":"ParcellationAnnotation/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAnnotation/#direct","text":"name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0","title":"Direct"},{"location":"ParcellationAnnotation/#induced","text":"name: ParcellationAnnotation description: A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_anatomical_annotation_set: name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true internal_identifier: name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true voxel_count: name: voxel_count description: The number of voxels (3D pixels) spanned by the parcellation annotation (optional). from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: voxel_count owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: integer minimum_value: 0","title":"Induced"},{"location":"ParcellationAnnotationTermMap/","text":"Class: ParcellationAnnotationTermMap The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. URI: ANSRS:ParcellationAnnotationTermMap classDiagram class ParcellationAnnotationTermMap ParcellationAnnotationTermMap : subject_parcellation_annotation ParcellationAnnotationTermMap --> ParcellationAnnotation : subject_parcellation_annotation ParcellationAnnotationTermMap : subject_parcellation_term ParcellationAnnotationTermMap --> ParcellationTerm : subject_parcellation_term Slots Name Cardinality and Range Description Inheritance subject_parcellation_annotation 1..1 ParcellationAnnotation Reference to the parcellation annotation that is the subject of the associati... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term that is the subject of the association direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAnnotationTermMap native ANSRS:ParcellationAnnotationTermMap LinkML Source Direct name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema range: ParcellationTerm required: true Induced name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_annotation owner: ParcellationAnnotationTermMap domain_of: - ParcellationAnnotationTermMap range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema alias: subject_parcellation_term owner: ParcellationAnnotationTermMap domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true","title":"Class: ParcellationAnnotationTermMap"},{"location":"ParcellationAnnotationTermMap/#class-parcellationannotationtermmap","text":"The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. URI: ANSRS:ParcellationAnnotationTermMap classDiagram class ParcellationAnnotationTermMap ParcellationAnnotationTermMap : subject_parcellation_annotation ParcellationAnnotationTermMap --> ParcellationAnnotation : subject_parcellation_annotation ParcellationAnnotationTermMap : subject_parcellation_term ParcellationAnnotationTermMap --> ParcellationTerm : subject_parcellation_term","title":"Class: ParcellationAnnotationTermMap"},{"location":"ParcellationAnnotationTermMap/#slots","text":"Name Cardinality and Range Description Inheritance subject_parcellation_annotation 1..1 ParcellationAnnotation Reference to the parcellation annotation that is the subject of the associati... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term that is the subject of the association direct","title":"Slots"},{"location":"ParcellationAnnotationTermMap/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAnnotationTermMap/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAnnotationTermMap/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAnnotationTermMap native ANSRS:ParcellationAnnotationTermMap","title":"Mappings"},{"location":"ParcellationAnnotationTermMap/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAnnotationTermMap/#direct","text":"name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema range: ParcellationTerm required: true","title":"Direct"},{"location":"ParcellationAnnotationTermMap/#induced","text":"name: ParcellationAnnotationTermMap description: The parcellation annotation term map table defines the relationship between parcellation annotations and parcellation terms. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. A parcellation term can be spatially parameterized by the union of one or more parcellation annotations within a versioned release of an anatomical annotation set. For example, annotations defining individual cortical layers in cortical region R (R1, R2/3, R4, etc) can be combined to define the parent region R. from_schema: https://w3id.org/my-org/ansrs-schema attributes: subject_parcellation_annotation: name: subject_parcellation_annotation description: Reference to the parcellation annotation that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_annotation owner: ParcellationAnnotationTermMap domain_of: - ParcellationAnnotationTermMap range: ParcellationAnnotation required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term that is the subject of the association. from_schema: https://w3id.org/my-org/ansrs-schema alias: subject_parcellation_term owner: ParcellationAnnotationTermMap domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true","title":"Induced"},{"location":"ParcellationAtlas/","text":"Class: ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). URI: ANSRS:ParcellationAtlas classDiagram class ParcellationAtlas VersionedNamedThing <|-- ParcellationAtlas ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas --> AnatomicalAnnotationSet : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas --> AnatomicalSpace : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas --> ParcellationTerminology : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> ParcellationAtlas : revision_of ParcellationAtlas : specialization_of ParcellationAtlas --> ParcellationAtlas : specialization_of ParcellationAtlas : version Inheritance NamedThing VersionedNamedThing ParcellationAtlas Slots Name Cardinality and Range Description Inheritance has_anatomical_space 1..1 AnatomicalSpace Reference to the anatomical space component of the parcellation atlas direct has_anatomical_annotation_set 1..1 AnatomicalAnnotationSet Reference to the anatomical annotation set component of the parcellation atla... direct has_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology component of the parcellation atlas direct specialization_of 0..1 ParcellationAtlas Reference to the general (non versioned) parcellation atlas for which the par... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationAtlas VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationAtlas specialization_of range ParcellationAtlas ParcellationAtlas revision_of range ParcellationAtlas Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationAtlas native ANSRS:ParcellationAtlas LinkML Source Direct name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAtlas Induced name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: specialization_of owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationAtlas version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationAtlas domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationAtlas domain_of: - VersionedNamedThing range: ParcellationAtlas id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationAtlas domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationAtlas domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationAtlas domain_of: - NamedThing range: string required: true","title":"Class: ParcellationAtlas"},{"location":"ParcellationAtlas/#class-parcellationatlas","text":"A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499). URI: ANSRS:ParcellationAtlas classDiagram class ParcellationAtlas VersionedNamedThing <|-- ParcellationAtlas ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas --> AnatomicalAnnotationSet : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas --> AnatomicalSpace : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas --> ParcellationTerminology : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> ParcellationAtlas : revision_of ParcellationAtlas : specialization_of ParcellationAtlas --> ParcellationAtlas : specialization_of ParcellationAtlas : version","title":"Class: ParcellationAtlas"},{"location":"ParcellationAtlas/#inheritance","text":"NamedThing VersionedNamedThing ParcellationAtlas","title":"Inheritance"},{"location":"ParcellationAtlas/#slots","text":"Name Cardinality and Range Description Inheritance has_anatomical_space 1..1 AnatomicalSpace Reference to the anatomical space component of the parcellation atlas direct has_anatomical_annotation_set 1..1 AnatomicalAnnotationSet Reference to the anatomical annotation set component of the parcellation atla... direct has_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology component of the parcellation atlas direct specialization_of 0..1 ParcellationAtlas Reference to the general (non versioned) parcellation atlas for which the par... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationAtlas VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationAtlas/#usages","text":"used by used in type used ParcellationAtlas specialization_of range ParcellationAtlas ParcellationAtlas revision_of range ParcellationAtlas","title":"Usages"},{"location":"ParcellationAtlas/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationAtlas/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationAtlas/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationAtlas native ANSRS:ParcellationAtlas","title":"Mappings"},{"location":"ParcellationAtlas/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationAtlas/#direct","text":"name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationAtlas","title":"Direct"},{"location":"ParcellationAtlas/#induced","text":"name: ParcellationAtlas description: 'A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationAtlas attributes: has_anatomical_space: name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true has_anatomical_annotation_set: name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true has_parcellation_terminology: name: has_parcellation_terminology description: Reference to the parcellation terminology component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parcellation_terminology owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationTerminology required: true specialization_of: name: specialization_of description: Reference to the general (non versioned) parcellation atlas for which the parcellation atlas is a specific version release of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: specialization_of owner: ParcellationAtlas domain_of: - ParcellationAtlas range: ParcellationAtlas version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationAtlas domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationAtlas domain_of: - VersionedNamedThing range: ParcellationAtlas id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationAtlas domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationAtlas domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationAtlas domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"ParcellationColorAssignment/","text":"Class: ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. URI: ANSRS:ParcellationColorAssignment classDiagram class ParcellationColorAssignment ParcellationColorAssignment : color ParcellationColorAssignment : part_of_parcellation_color_scheme ParcellationColorAssignment --> ParcellationColorScheme : part_of_parcellation_color_scheme ParcellationColorAssignment : subject_parcellation_term ParcellationColorAssignment --> ParcellationTerm : subject_parcellation_term Slots Name Cardinality and Range Description Inheritance part_of_parcellation_color_scheme 1..1 ParcellationColorScheme Reference to the parcellation color scheme for which the color assignment is ... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term identifier for which the color assignment ... direct color 0..1 String A string representing to hex triplet code of a color direct Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationColorAssignment native ANSRS:ParcellationColorAssignment LinkML Source Direct name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: string structured_pattern: syntax: '{ColorHexTriplet}' Induced name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_color_scheme owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_term owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Class: ParcellationColorAssignment"},{"location":"ParcellationColorAssignment/#class-parcellationcolorassignment","text":"The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. URI: ANSRS:ParcellationColorAssignment classDiagram class ParcellationColorAssignment ParcellationColorAssignment : color ParcellationColorAssignment : part_of_parcellation_color_scheme ParcellationColorAssignment --> ParcellationColorScheme : part_of_parcellation_color_scheme ParcellationColorAssignment : subject_parcellation_term ParcellationColorAssignment --> ParcellationTerm : subject_parcellation_term","title":"Class: ParcellationColorAssignment"},{"location":"ParcellationColorAssignment/#slots","text":"Name Cardinality and Range Description Inheritance part_of_parcellation_color_scheme 1..1 ParcellationColorScheme Reference to the parcellation color scheme for which the color assignment is ... direct subject_parcellation_term 1..1 ParcellationTerm Reference to the parcellation term identifier for which the color assignment ... direct color 0..1 String A string representing to hex triplet code of a color direct","title":"Slots"},{"location":"ParcellationColorAssignment/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationColorAssignment/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationColorAssignment/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationColorAssignment native ANSRS:ParcellationColorAssignment","title":"Mappings"},{"location":"ParcellationColorAssignment/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationColorAssignment/#direct","text":"name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Direct"},{"location":"ParcellationColorAssignment/#induced","text":"name: ParcellationColorAssignment description: The parcellation color assignment associates hex color value to a parcellation term within a versioned release of a color scheme. A parcellation term is uniquely denoted by a parcellation term identifier and the parcellation terminology it belongs to. from_schema: https://w3id.org/my-org/ansrs-schema attributes: part_of_parcellation_color_scheme: name: part_of_parcellation_color_scheme description: Reference to the parcellation color scheme for which the color assignment is part of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_color_scheme owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: ParcellationColorScheme required: true subject_parcellation_term: name: subject_parcellation_term description: Reference to the parcellation term identifier for which the color assignment is about. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_term owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment - ParcellationAnnotationTermMap range: ParcellationTerm required: true color: name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Induced"},{"location":"ParcellationColorScheme/","text":"Class: ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. URI: ANSRS:ParcellationColorScheme classDiagram class ParcellationColorScheme VersionedNamedThing <|-- ParcellationColorScheme ParcellationColorScheme : description ParcellationColorScheme : id ParcellationColorScheme : name ParcellationColorScheme : revision_of ParcellationColorScheme --> ParcellationTerminology : revision_of ParcellationColorScheme : subject_parcellation_terminology ParcellationColorScheme --> ParcellationTerminology : subject_parcellation_terminology ParcellationColorScheme : version Inheritance NamedThing VersionedNamedThing ParcellationColorScheme Slots Name Cardinality and Range Description Inheritance subject_parcellation_terminology 1..1 ParcellationTerminology Reference to the parcellation terminology for which the parcellation color sc... direct version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationColorAssignment part_of_parcellation_color_scheme range ParcellationColorScheme Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationColorScheme native ANSRS:ParcellationColorScheme LinkML Source Direct name: ParcellationColorScheme description: A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: subject_parcellation_terminology: name: subject_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation color scheme is in context of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true Induced name: ParcellationColorScheme description: A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: subject_parcellation_terminology: name: subject_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation color scheme is in context of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: subject_parcellation_terminology owner: ParcellationColorScheme domain_of: - ParcellationColorScheme range: ParcellationTerminology required: true version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationColorScheme domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationColorScheme domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationColorScheme domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationColorScheme domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationColorScheme domain_of: - NamedThing range: string required: true","title":"Class: ParcellationColorScheme"},{"location":"ParcellationColorScheme/#class-parcellationcolorscheme","text":"A parcellation color scheme is a versioned release color palette that can be used to visualize a parcellation terminology or its related parcellation annotation. A parcellation terminology may have zero or more parcellation color schemes and each color scheme is in context of a specific parcellation terminology, where each parcellation term is assigned a hex color value. A parcellation color scheme is defined as a part of one and only one parcellation terminology. 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A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. 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A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. Although term identifiers must be unique within the context of one versioned release of a parcellation terminology, they can be reused in different parcellation terminology versions enabling the representation of terminology updates and modifications over time. 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A parcellation term is a unique and exclusive member of a versioned release parcellation terminology. 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A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. 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For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 range: ParcellationTermSet","title":"Direct"},{"location":"ParcellationTermSet/#induced","text":"name: ParcellationTermSet description: A parcellation term set is the set of parcellation terms within a specific parcellation terminology. A parcellation term set belongs to one and only one parcellation terminology and each parcellation term in a parcellation terminology belongs to one and only one term set. If the parcellation terminology is a taxonomy, parcellation term sets can be used to represent taxonomic ranks. For consistency, if the terminology does not have the notion of taxonomic ranks, all terms are grouped into a single parcellation term set. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing attributes: part_of_parcellation_terminology: name: part_of_parcellation_terminology description: Reference to the parcellation terminology for which the parcellation term set partitions. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_parcellation_terminology owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTerminology required: true ordinal: name: ordinal description: Ordinal of the parcellation term set among other term sets within the context of the associated parcellation terminology. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: ordinal owner: ParcellationTermSet domain_of: - ParcellationTermSet - ParcellationTerm range: integer minimum_value: 0 has_parent_parcellation_term_set: name: has_parent_parcellation_term_set description: Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_parent_parcellation_term_set owner: ParcellationTermSet domain_of: - ParcellationTermSet range: ParcellationTermSet id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTermSet domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTermSet domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTermSet domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"ParcellationTerminology/","text":"Class: ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) URI: ANSRS:ParcellationTerminology classDiagram class ParcellationTerminology VersionedNamedThing <|-- ParcellationTerminology ParcellationTerminology : description ParcellationTerminology : id ParcellationTerminology : name ParcellationTerminology : revision_of ParcellationTerminology --> ParcellationTerminology : revision_of ParcellationTerminology : version Inheritance NamedThing VersionedNamedThing ParcellationTerminology Slots Name Cardinality and Range Description Inheritance version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used ParcellationTerminology revision_of range ParcellationTerminology ParcellationTermSet part_of_parcellation_terminology range ParcellationTerminology ParcellationColorScheme subject_parcellation_terminology range ParcellationTerminology ParcellationColorScheme revision_of range ParcellationTerminology AnatomicalAnnotationSet revision_of range ParcellationTerminology ParcellationAtlas has_parcellation_terminology range ParcellationTerminology Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:ParcellationTerminology native ANSRS:ParcellationTerminology LinkML Source Direct name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology Induced name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationTerminology domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationTerminology domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTerminology domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTerminology domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTerminology domain_of: - NamedThing range: string required: true","title":"Class: ParcellationTerminology"},{"location":"ParcellationTerminology/#class-parcellationterminology","text":"A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499) URI: ANSRS:ParcellationTerminology classDiagram class ParcellationTerminology VersionedNamedThing <|-- ParcellationTerminology ParcellationTerminology : description ParcellationTerminology : id ParcellationTerminology : name ParcellationTerminology : revision_of ParcellationTerminology --> ParcellationTerminology : revision_of ParcellationTerminology : version","title":"Class: ParcellationTerminology"},{"location":"ParcellationTerminology/#inheritance","text":"NamedThing VersionedNamedThing ParcellationTerminology","title":"Inheritance"},{"location":"ParcellationTerminology/#slots","text":"Name Cardinality and Range Description Inheritance version 1..1 String VersionedNamedThing revision_of 0..1 ParcellationTerminology VersionedNamedThing id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"ParcellationTerminology/#usages","text":"used by used in type used ParcellationTerminology revision_of range ParcellationTerminology ParcellationTermSet part_of_parcellation_terminology range ParcellationTerminology ParcellationColorScheme subject_parcellation_terminology range ParcellationTerminology ParcellationColorScheme revision_of range ParcellationTerminology AnatomicalAnnotationSet revision_of range ParcellationTerminology ParcellationAtlas has_parcellation_terminology range ParcellationTerminology","title":"Usages"},{"location":"ParcellationTerminology/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ParcellationTerminology/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"ParcellationTerminology/#mappings","text":"Mapping Type Mapped Value self ANSRS:ParcellationTerminology native ANSRS:ParcellationTerminology","title":"Mappings"},{"location":"ParcellationTerminology/#linkml-source","text":"","title":"LinkML Source"},{"location":"ParcellationTerminology/#direct","text":"name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology","title":"Direct"},{"location":"ParcellationTerminology/#induced","text":"name: ParcellationTerminology description: 'A parcellation terminology is a versioned release set of terms that can be used to label annotations in an atlas, providing human readability and context and allowing communication about brain locations and structural properties. Typically, a terminology is a set of descriptive anatomical terms following a specific naming convention and/or approach to organization scheme. The terminology may be a flat list of controlled vocabulary, a taxonomy and partonomy, or an ontology (ref: ILX:0777107, RRID:SCR_023499)' from_schema: https://w3id.org/my-org/ansrs-schema is_a: VersionedNamedThing slot_usage: revision_of: name: revision_of domain_of: - VersionedNamedThing range: ParcellationTerminology attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: ParcellationTerminology domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: ParcellationTerminology domain_of: - VersionedNamedThing range: ParcellationTerminology id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: ParcellationTerminology domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: ParcellationTerminology domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: ParcellationTerminology domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:time base : XSDTime uri : xsd:time repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Uri/","text":"Type: Uri a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str Comments in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str","title":"Type: Uri"},{"location":"Uri/#comments","text":"in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node","title":"Comments"},{"location":"Uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uri/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"Uriorcurie/","text":"Type: Uriorcurie a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uriorcurie/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"VersionedNamedThing/","text":"Class: VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:VersionedNamedThing classDiagram class VersionedNamedThing NamedThing <|-- VersionedNamedThing VersionedNamedThing <|-- ImageDataset VersionedNamedThing <|-- AnatomicalSpace VersionedNamedThing <|-- ParcellationTerminology VersionedNamedThing <|-- ParcellationColorScheme VersionedNamedThing <|-- AnatomicalAnnotationSet VersionedNamedThing <|-- ParcellationAtlas VersionedNamedThing : description VersionedNamedThing : id VersionedNamedThing : name VersionedNamedThing : revision_of VersionedNamedThing --> VersionedNamedThing : revision_of VersionedNamedThing : version Inheritance NamedThing VersionedNamedThing ImageDataset AnatomicalSpace ParcellationTerminology ParcellationColorScheme AnatomicalAnnotationSet ParcellationAtlas Slots Name Cardinality and Range Description Inheritance version 1..1 String direct revision_of 0..1 VersionedNamedThing direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing Usages used by used in type used VersionedNamedThing revision_of range VersionedNamedThing Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema Mappings Mapping Type Mapped Value self ANSRS:VersionedNamedThing native ANSRS:VersionedNamedThing LinkML Source Direct name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true slots: - version - revision_of Induced name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: VersionedNamedThing domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: VersionedNamedThing domain_of: - VersionedNamedThing range: VersionedNamedThing id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: VersionedNamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: VersionedNamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: VersionedNamedThing domain_of: - NamedThing range: string required: true","title":"Class: VersionedNamedThing"},{"location":"VersionedNamedThing/#class-versionednamedthing","text":"Core base entity for ANSRS schema representing an versioned named thing. NOTE : this is an abstract class and should not be instantiated directly URI: ANSRS:VersionedNamedThing classDiagram class VersionedNamedThing NamedThing <|-- VersionedNamedThing VersionedNamedThing <|-- ImageDataset VersionedNamedThing <|-- AnatomicalSpace VersionedNamedThing <|-- ParcellationTerminology VersionedNamedThing <|-- ParcellationColorScheme VersionedNamedThing <|-- AnatomicalAnnotationSet VersionedNamedThing <|-- ParcellationAtlas VersionedNamedThing : description VersionedNamedThing : id VersionedNamedThing : name VersionedNamedThing : revision_of VersionedNamedThing --> VersionedNamedThing : revision_of VersionedNamedThing : version","title":"Class: VersionedNamedThing"},{"location":"VersionedNamedThing/#inheritance","text":"NamedThing VersionedNamedThing ImageDataset AnatomicalSpace ParcellationTerminology ParcellationColorScheme AnatomicalAnnotationSet ParcellationAtlas","title":"Inheritance"},{"location":"VersionedNamedThing/#slots","text":"Name Cardinality and Range Description Inheritance version 1..1 String direct revision_of 0..1 VersionedNamedThing direct id 1..1 Uriorcurie NamedThing name 1..1 String NamedThing description 1..1 String NamedThing","title":"Slots"},{"location":"VersionedNamedThing/#usages","text":"used by used in type used VersionedNamedThing revision_of range VersionedNamedThing","title":"Usages"},{"location":"VersionedNamedThing/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"VersionedNamedThing/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"VersionedNamedThing/#mappings","text":"Mapping Type Mapped Value self ANSRS:VersionedNamedThing native ANSRS:VersionedNamedThing","title":"Mappings"},{"location":"VersionedNamedThing/#linkml-source","text":"","title":"LinkML Source"},{"location":"VersionedNamedThing/#direct","text":"name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true slots: - version - revision_of","title":"Direct"},{"location":"VersionedNamedThing/#induced","text":"name: VersionedNamedThing description: Core base entity for ANSRS schema representing an versioned named thing. from_schema: https://w3id.org/my-org/ansrs-schema is_a: NamedThing abstract: true attributes: version: name: version from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: version owner: VersionedNamedThing domain_of: - VersionedNamedThing range: string required: true revision_of: name: revision_of from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: revision_of owner: VersionedNamedThing domain_of: - VersionedNamedThing range: VersionedNamedThing id: name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id owner: VersionedNamedThing domain_of: - NamedThing range: uriorcurie required: true name: name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name owner: VersionedNamedThing domain_of: - NamedThing range: string required: true description: name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description owner: VersionedNamedThing domain_of: - NamedThing range: string required: true","title":"Induced"},{"location":"about/","text":"ansrs-schema Schema for ANSRS","title":"About"},{"location":"about/#ansrs-schema","text":"Schema for ANSRS","title":"ansrs-schema"},{"location":"ansrs-schema/","text":"ansrs-schema Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema","title":"ansrs-schema"},{"location":"ansrs-schema/#ansrs-schema","text":"Schema for ANSRS URI: https://w3id.org/my-org/ansrs-schema","title":"ansrs-schema"},{"location":"color/","text":"Slot: color A string representing to hex triplet code of a color URI: ANSRS:color Applicable Classes Name Description Modifies Slot ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellatio... no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"Slot: color"},{"location":"color/#slot-color","text":"A string representing to hex triplet code of a color URI: ANSRS:color","title":"Slot: color"},{"location":"color/#applicable-classes","text":"Name Description Modifies Slot ParcellationColorAssignment The parcellation color assignment associates hex color value to a parcellatio... no","title":"Applicable Classes"},{"location":"color/#properties","text":"Range: String","title":"Properties"},{"location":"color/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"color/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"color/#linkml-source","text":"name: color description: A string representing to hex triplet code of a color from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: color owner: ParcellationColorAssignment domain_of: - ParcellationColorAssignment range: string structured_pattern: syntax: '{ColorHexTriplet}'","title":"LinkML Source"},{"location":"description/","text":"Slot: description URI: ANSRS:description Applicable Classes Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description domain_of: - NamedThing range: string required: true","title":"Slot: description"},{"location":"description/#slot-description","text":"URI: ANSRS:description","title":"Slot: description"},{"location":"description/#applicable-classes","text":"Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no","title":"Applicable Classes"},{"location":"description/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"description/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"description/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"description/#linkml-source","text":"name: description from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: description domain_of: - NamedThing range: string required: true","title":"LinkML Source"},{"location":"has_anatomical_annotation_set/","text":"Slot: has_anatomical_annotation_set Reference to the anatomical annotation set component of the parcellation atlas URI: ANSRS:has_anatomical_annotation_set Applicable Classes Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no Properties Range: AnatomicalAnnotationSet Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true","title":"Slot: has_anatomical_annotation_set"},{"location":"has_anatomical_annotation_set/#slot-has_anatomical_annotation_set","text":"Reference to the anatomical annotation set component of the parcellation atlas URI: ANSRS:has_anatomical_annotation_set","title":"Slot: has_anatomical_annotation_set"},{"location":"has_anatomical_annotation_set/#applicable-classes","text":"Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no","title":"Applicable Classes"},{"location":"has_anatomical_annotation_set/#properties","text":"Range: AnatomicalAnnotationSet Required: True","title":"Properties"},{"location":"has_anatomical_annotation_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_anatomical_annotation_set/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_anatomical_annotation_set/#linkml-source","text":"name: has_anatomical_annotation_set description: Reference to the anatomical annotation set component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_annotation_set owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalAnnotationSet required: true","title":"LinkML Source"},{"location":"has_anatomical_space/","text":"Slot: has_anatomical_space Reference to the anatomical space component of the parcellation atlas URI: ANSRS:has_anatomical_space Applicable Classes Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no Properties Range: AnatomicalSpace Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - ParcellationAtlas range: AnatomicalSpace required: true","title":"Slot: has_anatomical_space"},{"location":"has_anatomical_space/#slot-has_anatomical_space","text":"Reference to the anatomical space component of the parcellation atlas URI: ANSRS:has_anatomical_space","title":"Slot: has_anatomical_space"},{"location":"has_anatomical_space/#applicable-classes","text":"Name Description Modifies Slot ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no","title":"Applicable Classes"},{"location":"has_anatomical_space/#properties","text":"Range: AnatomicalSpace Required: True","title":"Properties"},{"location":"has_anatomical_space/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_anatomical_space/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"has_anatomical_space/#linkml-source","text":"name: has_anatomical_space description: Reference to the anatomical space component of the parcellation atlas from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: has_anatomical_space owner: ParcellationAtlas domain_of: - 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ParcellationTerm range: ParcellationTerm","title":"LinkML Source"},{"location":"has_parent_parcellation_term_set/","text":"Slot: has_parent_parcellation_term_set Reference to the parent parcellation term set for which the parcellation term set is a child (lower taxonomic rank) of. 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ParcellationTermSet range: ParcellationTermSet","title":"LinkML Source"},{"location":"id/","text":"Slot: id URI: ANSRS:id Applicable Classes Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id domain_of: - NamedThing range: uriorcurie required: true","title":"Slot: id"},{"location":"id/#slot-id","text":"URI: ANSRS:id","title":"Slot: id"},{"location":"id/#applicable-classes","text":"Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no","title":"Applicable Classes"},{"location":"id/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"id/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"id/#linkml-source","text":"name: id from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 identifier: true alias: id domain_of: - NamedThing range: uriorcurie required: true","title":"LinkML Source"},{"location":"internal_identifier/","text":"Slot: internal_identifier An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set URI: ANSRS:internal_identifier Applicable Classes Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true","title":"Slot: internal_identifier"},{"location":"internal_identifier/#slot-internal_identifier","text":"An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set URI: ANSRS:internal_identifier","title":"Slot: internal_identifier"},{"location":"internal_identifier/#applicable-classes","text":"Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no","title":"Applicable Classes"},{"location":"internal_identifier/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"internal_identifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"internal_identifier/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"internal_identifier/#linkml-source","text":"name: internal_identifier description: An identifier that uniquely denotes a specific parcellation annotation within the context of an anatomical annotation set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: internal_identifier owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: string required: true","title":"LinkML Source"},{"location":"measures/","text":"Slot: measures Reference to the specific image dataset used to define the anatomical space. 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NamedThing range: string required: true","title":"Slot: name"},{"location":"name/#slot-name","text":"URI: ANSRS:name","title":"Slot: name"},{"location":"name/#applicable-classes","text":"Name Description Modifies Slot NamedThing Core base entity for ANSRS schema representing an entity with an identifier ... no ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no VersionedNamedThing Core base entity for ANSRS schema representing an versioned named thing no","title":"Applicable Classes"},{"location":"name/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"name/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"name/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"name/#linkml-source","text":"name: name from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: name domain_of: - 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ParcellationTermSet - ParcellationTerm range: string","title":"LinkML Source"},{"location":"parameterizes/","text":"Slot: parameterizes Reference to the anatomical space for which the anatomical annotation set is anchored URI: ANSRS:parameterizes Applicable Classes Name Description Modifies Slot AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no Properties Range: AnatomicalSpace Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true","title":"Slot: parameterizes"},{"location":"parameterizes/#slot-parameterizes","text":"Reference to the anatomical space for which the anatomical annotation set is anchored URI: ANSRS:parameterizes","title":"Slot: parameterizes"},{"location":"parameterizes/#applicable-classes","text":"Name Description Modifies Slot AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no","title":"Applicable Classes"},{"location":"parameterizes/#properties","text":"Range: AnatomicalSpace Required: True","title":"Properties"},{"location":"parameterizes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parameterizes/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"parameterizes/#linkml-source","text":"name: parameterizes description: Reference to the anatomical space for which the anatomical annotation set is anchored from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: parameterizes owner: AnatomicalAnnotationSet domain_of: - AnatomicalAnnotationSet range: AnatomicalSpace required: true","title":"LinkML Source"},{"location":"part_of_anatomical_annotation_set/","text":"Slot: part_of_anatomical_annotation_set URI: ANSRS:part_of_anatomical_annotation_set Applicable Classes Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no Properties Range: AnatomicalAnnotationSet Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/my-org/ansrs-schema LinkML Source name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true","title":"Slot: part_of_anatomical_annotation_set"},{"location":"part_of_anatomical_annotation_set/#slot-part_of_anatomical_annotation_set","text":"URI: ANSRS:part_of_anatomical_annotation_set","title":"Slot: part_of_anatomical_annotation_set"},{"location":"part_of_anatomical_annotation_set/#applicable-classes","text":"Name Description Modifies Slot ParcellationAnnotation A parcellation annotation defines a specific segment of an anatomical space d... no","title":"Applicable Classes"},{"location":"part_of_anatomical_annotation_set/#properties","text":"Range: AnatomicalAnnotationSet Required: True","title":"Properties"},{"location":"part_of_anatomical_annotation_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"part_of_anatomical_annotation_set/#schema-source","text":"from schema: https://w3id.org/my-org/ansrs-schema","title":"Schema Source"},{"location":"part_of_anatomical_annotation_set/#linkml-source","text":"name: part_of_anatomical_annotation_set from_schema: https://w3id.org/my-org/ansrs-schema rank: 1000 alias: part_of_anatomical_annotation_set owner: ParcellationAnnotation domain_of: - ParcellationAnnotation range: AnatomicalAnnotationSet required: true","title":"LinkML Source"},{"location":"part_of_parcellation_color_scheme/","text":"Slot: part_of_parcellation_color_scheme Reference to the parcellation color scheme for which the color assignment is part of. 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