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Our bioconda recipe does not use the build.py script #95

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loic-couderc opened this issue Oct 16, 2019 · 1 comment

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loic-couderc commented Oct 16, 2019

Our Bioconda recipe does not use the same process to build MATAM.
For maintenance purpose it will be better to use the same process.

loic-couderc added the enhancement label

loic-couderc added a commit that referenced this issue


          Update build process #95

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loic-couderc commented Oct 16, 2019 •

edited

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~~I have updated my fork: https://github.com/loic-couderc/bioconda-recipes/commit/5448ede955aa7ec56336710b331e5513663c85be~~
To achieve this, update the bioconda recipe as follow:
recipes/matam/build.sh

# replace
git submodule update --init --recursive -- componentsearch ovgraphbuild
# with
$PYTHON build.py

# remove
# use make CC=$CXX instead of make to avoid g++ not found
cd $SRC_DIR/componentsearch && make CC=$CXX

# remove
OVGRAPHBUILD_BUILD_DIR=$SRC_DIR/ovgraphbuild/build
mkdir $OVGRAPHBUILD_BUILD_DIR && cd $OVGRAPHBUILD_BUILD_DIR && cmake .. -G"CodeBlocks - Unix Makefiles" && make

recipes/matam/meta.yaml

# add in "host" section:
    - python >=3

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