From c08bdef166dae2d0007e4eace5890da66ca64258 Mon Sep 17 00:00:00 2001
From: rforaita <foraita@bips.uni-bremen.de>
Date: Tue, 8 Aug 2023 10:49:36 +0200
Subject: [PATCH] gitignore

---
 .gitignore     |  5 ++--
 misc/files.txt | 74 --------------------------------------------------
 2 files changed, 3 insertions(+), 76 deletions(-)
 delete mode 100644 misc/files.txt

diff --git a/.gitignore b/.gitignore
index efefff1..f7ed4b9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,6 @@
+# misc
+misc/
+
 # History files
 .Rhistory
 .Rapp.history
@@ -39,5 +42,3 @@ vignettes/*.pdf
 # R Environment Variables
 .Renviron
 
-# misc
-misc/
diff --git a/misc/files.txt b/misc/files.txt
deleted file mode 100644
index af37078..0000000
--- a/misc/files.txt
+++ /dev/null
@@ -1,74 +0,0 @@
-FILE							 Input								Output	
--------------------------------+--------------------------------+-------------------------------------
-01_DataPreparation				from snapshot						00.RData
-																	
-02_CreateAnalysisData			00.RData							data2impute.rds
-
-03_Imputation					data2impute.rds						MI-10.rds
-																	MI-input.rds
-
-04_CreateScores					MI-10.rds							MI-10-scores-mids.rds
-
-05_fixedGaps					MI-10-scores-mids.rds				graph.RData
-																	original-data.RData
-																	
-06_Graph_cluster_10trees_pa		graph.RData							graph-10trees.RData
-
-06sens_Graph_cluster_10trees_pa_alpha	graph.RData					graph-10trees-alpha.RData (alpha = 10%)
-
-07a_Batch_Imputation_boot		MI-input.rds						BOOTruns100.rds; 
-																	registry: ccg-boot100
-
-07b_Bootstrap-CreateScores-100boot_1mi	ccg-boot100.dbp/results/	/boot-mi1/1.rds - 100.rds  	(from 10 imputed chains keep chain 1)
-
-07c_Batch_graph_boot_mi1		/boot-mi1/1.rds - 100.rds			boot100_mi1-graph.rds
-								bt_sonst.RData						registry: ccg-boot100_mi1-graph.dbp		
-								
-07d_Boot2igraph					boot100_mi1-graph.RDS				boot100igraph.RData
-								graph-10trees.RData
-
-08_SEM							original-data.RData					graph-sem-hc_bic-cg.RData
-								graph.RData
-
-09_Testwisedeletion				data2impute.rds						graph-twd.RData
-								graph.RData							
-																	
-10_RMSEU						boot100_mi1-graph.RDS				rmseu.RData							
-																	
-
-
--------------------------------+--------------------------------+-------------------------------------
-RESULTS							 Input								Output
--------------------------------+--------------------------------+-------------------------------------
-
-Table_descriptives				graph.RData							table_desc_with_missing.rtf
-																	tableS_desc_after_imputation.rtf
-
-Table_paths_for_all...			graph-10trees.RData					paths_xxx.rtf
-								boot100_mi1-graph.RDS
-
-Table_networkcharacteristics	graph-10trees-pa.RDat				table_network.RData
-								twd.RData							table_network.rtf
-								graph-sem-hc_bic-cg.RData
-								boot100igraph.RData
-								graph-10trees.RData
-								graph-10trees-alpha.RData
-								rmseu.RData
-								
-Table_repeated_measurements		graph-10trees.RData					table-repeatedM-main.rtf
-								boot100_mi1-graph.RDS				table-repeatedM-boot-m1.rtf
-								
-TableS_edgefreq					graph-10trees.RData					tab_edgefreq.csv
-								boot100_mi1-graph.RDS
-								
-FigureS_miceplot				graph.RData							imp_boxplot.png
-																	imp_density.png
-																	imp_bar.png
-
-FigureS_missingnessPlot			graph.RData							MI_diagnostics.pdf	
-
-VisNet							graph-10trees.RData					vis-xxx.html	
-								graph-10trees-alpha.RData
-								graph-twd.RData
-								graph-sem-hc_bic-cg.RData
-								boot100igraph.RData
\ No newline at end of file