From ddab0002ccc90f663374e4582e7d586231389518 Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Thu, 7 Dec 2023 12:59:29 -0600
Subject: [PATCH] chore: Cut out deadcode

---
 src/include/align/Aligner.hpp                          |  2 --
 src/include/map/ChainBuilder.hpp                       |  1 -
 src/lib/align/Aligner.cpp                              |  2 --
 .../dragen/src/host/infra/linux/infra_linux_utils.cpp  | 10 ----------
 4 files changed, 15 deletions(-)

diff --git a/src/include/align/Aligner.hpp b/src/include/align/Aligner.hpp
index 63cf18c..7a7ab31 100644
--- a/src/include/align/Aligner.hpp
+++ b/src/include/align/Aligner.hpp
@@ -141,8 +141,6 @@ class Aligner {
   const map::Mapper         mapper_;
   const SimilarityScores    similarity_;
   const ScoreType           gapInit_;
-  // const ScoreType           gapExtend_;
-  // const ScoreType           unclipScore_;
   const ScoreType           alnMinScore_;
   const int                 aln_cfg_mapq_min_len_;
   const int                 aln_cfg_unpaired_pen_;
diff --git a/src/include/map/ChainBuilder.hpp b/src/include/map/ChainBuilder.hpp
index c1a1326..ac14298 100644
--- a/src/include/map/ChainBuilder.hpp
+++ b/src/include/map/ChainBuilder.hpp
@@ -77,7 +77,6 @@ class ChainBuilder {
   size_t                 seedChainCount_;
   double                 chainFilterRatio_    = 2.0;
   double                 chainFilterConstant_ = 0.0;
-  // int                    numRandomSampleHits_ = 0;
 };
 
 }  // namespace map
diff --git a/src/lib/align/Aligner.cpp b/src/lib/align/Aligner.cpp
index 37185ef..89cb7ef 100644
--- a/src/lib/align/Aligner.cpp
+++ b/src/lib/align/Aligner.cpp
@@ -56,8 +56,6 @@ Aligner::Aligner(
     mapper_(&hashtable),
     similarity_(similarity),
     gapInit_(gapInit),
-    // gapExtend_(gapExtend),
-    // unclipScore_(unclipScore),
     alnMinScore_(alnMinScore),
     aln_cfg_mapq_min_len_(aln_cfg_mapq_min_len),
     aln_cfg_unpaired_pen_(aln_cfg_unpaired_pen),
diff --git a/stubs/dragen/src/host/infra/linux/infra_linux_utils.cpp b/stubs/dragen/src/host/infra/linux/infra_linux_utils.cpp
index f3ddc25..b63e21c 100644
--- a/stubs/dragen/src/host/infra/linux/infra_linux_utils.cpp
+++ b/stubs/dragen/src/host/infra/linux/infra_linux_utils.cpp
@@ -39,16 +39,6 @@ namespace infra {
 static std::string g_kernelVersionStr;
 static int         g_kernelVersion;
 
-// static constexpr int MKVER(const int major, const int minor, const int patch)
-// {
-//   return major * 10000 + minor * 100 + patch;
-// }
-
-// static constexpr int MKVER(const int major, const int minor)
-// {
-//   return major * 10000 + minor * 100;
-// }
-
 //------------------------------------------------------------------------alain
 int GetDmiValue(const std::string& label, std::string& value)
 {