diff --git a/env.yml b/env.yml index 444862a..1d744b8 100644 --- a/env.yml +++ b/env.yml @@ -14,6 +14,9 @@ dependencies: - bioconda::picard>=2.27.4 # - bioconda::gatk4 - bioconda::fastqc + - bioconda::trim_galore + - bioconda::bowtie2 + - bioconda::woltka # - bioconda::multiqc # Python - conda-forge::python>=3.7 diff --git a/modules/08-metagenomics/.setup.sh.kate-swp b/modules/08-metagenomics/.setup.sh.kate-swp deleted file mode 100644 index efc292a..0000000 Binary files a/modules/08-metagenomics/.setup.sh.kate-swp and /dev/null differ diff --git a/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh b/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh index e06568f..256406c 100644 --- a/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh +++ b/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh @@ -4,7 +4,7 @@ # Step 0. Activate conda environment ############################################## -conda activate mopp +conda activate bootcamp echo "This is runnning woltka first step against the above50 database (large)"