.gitignore

# NOTE: This file is taken from DEICODE's .gitignore file.
# Temporary files
*~
\#*#

#big files
*simulation_base_truth.csv
*simulation_subsampled_noisy.csv
*simulation_base_truth.csv
*simulation_subsampled_noisy.csv
*.gz
*.gtf

*.py[cod]

# C extensions
*.so

# Packages
*.egg
*.eggs
*.egg-info
dist
build
eggs
parts
bin
var
sdist
develop-eggs
.installed.cfg
lib
lib64
__pycache__
.pytest_cache/

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
.tox
nosetests.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# vi
.*.swp

# Sphinx builds
doc/source/generated

# OSX files
.DS_Store

# IPython checkpoints
.ipynb_checkpoints

# example jupyter notebook outputs
example_notebooks/*/output/*

# to cut down on clutter in this directory
tmp_files/*
junk/*
# Duplicate .coverage files
.coverage.*

# Ignore test outputs that we don't want to bother having as demos
# (this cuts down the size of the repo)
docs/demos/*
!docs/demos/byrd/
!docs/demos/sleep_apnea/
!docs/demos/red_sea/
!docs/demos/q2_moving_pictures/
!docs/demos/mackerel/
# ... that being said, still don't bother including the q2templateassets/
# files (for any QIIME 2 Qurro outputs). As far as I'm aware, these files
# aren't used when viewing Qurro visualizations outside of QIIME 2 (even if
# the visualizations were created using QIIME 2).
docs/demos/*/q2templateassets/

# Ignore various outputs from Qurro's JS testing process
qurro/tests/web_tests/instrumented_js/*
coverage.xml
js_coverage.json