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Fix alias parsing and release fixed database #76

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5 of 6 tasks
reece opened this issue Apr 5, 2020 · 0 comments
Closed
5 of 6 tasks

Fix alias parsing and release fixed database #76

reece opened this issue Apr 5, 2020 · 0 comments
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@reece
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reece commented Apr 5, 2020

Something changed last year in a way that caused the entire defline to be loaded as an alias. seqrepo releases since last June or so are affected. This affects NCBI and Ensembl.
See comments in cli.py::load()

This issue is a master list for work to comprehensively fix parsing. It will need to span several package and data releases.

0.5.5

@reece reece changed the title Double-check/fix alias parsing from fasta Fix alias parsing and affected databases Apr 9, 2020
@reece reece changed the title Fix alias parsing and affected databases Fix alias parsing and release fixed database Apr 10, 2020
@reece reece added this to the 0.6 milestone Jun 9, 2020
@reece reece closed this as completed Jul 5, 2020
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