From 10fed6bd6cff991e1dd427d77cfc5f7a14e8335c Mon Sep 17 00:00:00 2001 From: EtomicBomb Date: Sun, 20 Oct 2024 19:39:09 -0400 Subject: [PATCH] just docker --- .dockerignore | 0 Dockerfile | 24 ++++++++++++++++++++++++ 2 files changed, 24 insertions(+) create mode 100644 .dockerignore create mode 100644 Dockerfile diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 000000000..e69de29bb diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 000000000..2bf802e19 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,24 @@ +FROM debian:12.7 + +WORKDIR /benchmarks + +COPY . . + +RUN apt update && apt install -y --no-install-recommends \ + tcpdump \ + curl \ + wget \ + unzip \ + samtools \ + minimap2 \ + bcftools \ + python3-pip \ + vim \ + ffmpeg unrtf imagemagick libarchive-tools libncurses5-dev libncursesw5-dev zstd liblzma-dev libbz2-dev zip unzip nodejs tcpdump \ + git + +RUN pip3 install --break-system-packages \ + scikit-learn \ + kaggle + +CMD ["bash"]