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quantum chemistry calculation workflow

Requirements:

  • start with molecular coordinates
  • calculate quantum mechanical wavefunction
  1. Input molecular coordinates from file
  2. Gather basis set from file and place on atoms
  3. Calculate overlap (S), kinetic energy (T), nuclear-electron attraction (V) integrals
  4. Calculate initial guess by diagonalizing H = T + V
  5. Do SCF iterations: integral direct TEIs, solve HF equations...
  6. ...
  7. Profit!

Plan post-2019-04-20

  • Find crate containing gamma function: rgsl?
  • Find crate containing n-dimensional array crate w/ eigendecomposition (nalgebra, ndarray)
  • What format should input files be in (Conf, TOML, JSON? not YAML)
  • Read in JSON-formatted basis set definitions from EMSL
  • How to store basis sets? Can we wrap https://github.com/MolSSI-BSE/basis_set_exchange (Python)? Yes