-
Notifications
You must be signed in to change notification settings - Fork 1
/
contrib.html
571 lines (436 loc) · 31 KB
/
contrib.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
<!DOCTYPE html>
<html lang="en" data-content_root="./" >
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
<title>How to contribute — benchopt 1.6.1.dev16 documentation</title>
<script data-cfasync="false">
document.documentElement.dataset.mode = localStorage.getItem("mode") || "";
document.documentElement.dataset.theme = localStorage.getItem("theme") || "";
</script>
<!--
this give us a css class that will be invisible only if js is disabled
-->
<noscript>
<style>
.pst-js-only { display: none !important; }
</style>
</noscript>
<!-- Loaded before other Sphinx assets -->
<link href="_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link href="_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="_static/styles/sphinx-book-theme.css?v=a3416100" />
<link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=d2d258e8" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
<link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
<link rel="stylesheet" type="text/css" href="_static/sphinx-design.min.css?v=95c83b7e" />
<link rel="stylesheet" type="text/css" href="_static/style.css?v=d6e0657c" />
<!-- So that users can add custom icons -->
<script src="_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
<!-- Pre-loaded scripts that we'll load fully later -->
<link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
<script src="_static/documentation_options.js?v=dddb45da"></script>
<script src="_static/doctools.js?v=9bcbadda"></script>
<script src="_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="_static/clipboard.min.js?v=a7894cd8"></script>
<script src="_static/copybutton.js?v=30646c52"></script>
<script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
<script src="_static/design-tabs.js?v=f930bc37"></script>
<script>DOCUMENTATION_OPTIONS.pagename = 'contrib';</script>
<link rel="icon" href="_static/logo_benchopt.png"/>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="What’s new" href="whats_new.html" />
<link rel="prev" title="Available benchmarks" href="available_benchmarks.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="1.6.1.dev16" />
</head>
<body data-bs-spy="scroll" data-bs-target=".bd-toc-nav" data-offset="180" data-bs-root-margin="0px 0px -60%" data-default-mode="">
<div id="pst-skip-link" class="skip-link d-print-none"><a href="#main-content">Skip to main content</a></div>
<div id="pst-scroll-pixel-helper"></div>
<button type="button" class="btn rounded-pill" id="pst-back-to-top">
<i class="fa-solid fa-arrow-up"></i>Back to top</button>
<dialog id="pst-search-dialog">
<form class="bd-search d-flex align-items-center"
action="search.html"
method="get">
<i class="fa-solid fa-magnifying-glass"></i>
<input type="search"
class="form-control"
name="q"
placeholder="Search..."
aria-label="Search..."
autocomplete="off"
autocorrect="off"
autocapitalize="off"
spellcheck="false"/>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
</form>
</dialog>
<div class="pst-async-banner-revealer d-none">
<aside id="bd-header-version-warning" class="d-none d-print-none" aria-label="Version warning"></aside>
</div>
<header class="bd-header navbar navbar-expand-lg bd-navbar d-print-none">
</header>
<div class="bd-container">
<div class="bd-container__inner bd-page-width">
<dialog id="pst-primary-sidebar-modal"></dialog>
<div id="pst-primary-sidebar" class="bd-sidebar-primary bd-sidebar">
<div class="sidebar-header-items sidebar-primary__section">
</div>
<div class="sidebar-primary-items__start sidebar-primary__section">
<div class="sidebar-primary-item">
<a class="navbar-brand logo" href="index.html">
<img src="_static/logo_benchopt.png" class="logo__image only-light" alt="benchopt logo"/>
<img src="_static/logo_benchopt.png" class="logo__image only-dark pst-js-only" alt="benchopt logo"/>
<p class="title logo__title">1.6.1.dev16</p>
</a></div>
<div class="sidebar-primary-item">
<form class="bd-search d-flex align-items-center"
action="search.html"
method="get">
<i class="fa-solid fa-magnifying-glass"></i>
<input type="search"
class="form-control"
name="q"
placeholder="Search..."
aria-label="Search..."
autocomplete="off"
autocorrect="off"
autocapitalize="off"
spellcheck="false"/>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
</form></div>
<div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
<div class="bd-toc-item navbar-nav active">
<ul class="nav bd-sidenav bd-sidenav__home-link">
<li class="toctree-l1">
<a class="reference internal" href="index.html">
Benchopt
</a>
</li>
</ul>
<ul class="current nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="get_started.html">Get started</a></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="benchmark_workflow/index.html">Benchmark workflow</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
<li class="toctree-l2"><a class="reference internal" href="benchmark_workflow/run_benchmark.html">Run a benchmark</a></li>
<li class="toctree-l2"><a class="reference internal" href="benchmark_workflow/write_benchmark.html">Write a benchmark</a></li>
<li class="toctree-l2"><a class="reference internal" href="benchmark_workflow/visualize_benchmark.html">Visualize a benchmark</a></li>
<li class="toctree-l2"><a class="reference internal" href="benchmark_workflow/manage_benchmark_results.html">Manage benchmark results</a></li>
<li class="toctree-l2"><a class="reference internal" href="benchmark_workflow/config_benchopt.html">Configure Benchopt</a></li>
</ul>
</details></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="tutorials/index.html">Tutorials</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
<li class="toctree-l2"><a class="reference internal" href="tutorials/build_benchmark.html">Understanding and building a simple benchmark</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorials/add_solver.html">Add a solver to an existing benchmark</a></li>
</ul>
</details></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="user_guide/index.html">User guide</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
<li class="toctree-l2 has-children"><a class="reference internal" href="user_guide/API_ref.html">API references</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.BaseObjective.html">benchopt.BaseObjective</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.BaseDataset.html">benchopt.BaseDataset</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.BaseSolver.html">benchopt.BaseSolver</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.run_benchmark.html">benchopt.run_benchmark</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.safe_import_context.html">benchopt.safe_import_context</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.plotting.plot_benchmark.html">benchopt.plotting.plot_benchmark</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.datasets.simulated.make_correlated_data.html">benchopt.datasets.simulated.make_correlated_data</a></li>
<li class="toctree-l3"><a class="reference internal" href="user_guide/generated/benchopt.utils.profile.html">benchopt.utils.profile</a></li>
</ul>
</details></li>
<li class="toctree-l2"><a class="reference internal" href="user_guide/CLI_ref.html">Command line interface (CLI) references</a></li>
<li class="toctree-l2"><a class="reference internal" href="user_guide/advanced.html">Advanced usage</a></li>
<li class="toctree-l2"><a class="reference internal" href="user_guide/ml_benchmark.html">Setting up an ML benchmark</a></li>
<li class="toctree-l2"><a class="reference internal" href="user_guide/performance_curves.html">Performance curves</a></li>
<li class="toctree-l2"><a class="reference internal" href="user_guide/tweak_datasets.html">Tweak a dataset</a></li>
</ul>
</details></li>
<li class="toctree-l1"><a class="reference internal" href="available_benchmarks.html">Available benchmarks</a></li>
<li class="toctree-l1 current active"><a class="current reference internal" href="#">How to contribute</a></li>
<li class="toctree-l1"><a class="reference internal" href="whats_new.html">What’s new</a></li>
</ul>
</div>
</nav></div>
</div>
<div class="sidebar-primary-items__end sidebar-primary__section">
<div class="sidebar-primary-item">
<div id="ethical-ad-placement"
class="flat"
data-ea-publisher="readthedocs"
data-ea-type="readthedocs-sidebar"
data-ea-manual="true">
</div></div>
</div>
</div>
<main id="main-content" class="bd-main" role="main">
<div class="sbt-scroll-pixel-helper"></div>
<div class="bd-content">
<div class="bd-article-container">
<div class="bd-header-article d-print-none">
<div class="header-article-items header-article__inner">
<div class="header-article-items__start">
<div class="header-article-item"><button class="sidebar-toggle primary-toggle btn btn-sm" title="Toggle primary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="fa-solid fa-bars"></span>
</button></div>
</div>
<div class="header-article-items__end">
<div class="header-article-item">
<div class="article-header-buttons">
<a href="https://github.com/benchopt/benchopt" target="_blank"
class="btn btn-sm btn-source-repository-button"
title="Source repository"
data-bs-placement="bottom" data-bs-toggle="tooltip"
>
<span class="btn__icon-container">
<i class="fab fa-github"></i>
</span>
</a>
<button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button pst-js-only" aria-label="Color mode" data-bs-title="Color mode" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="theme-switch fa-solid fa-sun fa-lg" data-mode="light" title="Light"></i>
<i class="theme-switch fa-solid fa-moon fa-lg" data-mode="dark" title="Dark"></i>
<i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto" title="System Settings"></i>
</button>
<button class="btn btn-sm pst-navbar-icon search-button search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass fa-lg"></i>
</button>
<button class="sidebar-toggle secondary-toggle btn btn-sm" title="Toggle secondary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="fa-solid fa-list"></span>
</button>
</div></div>
</div>
</div>
</div>
<div id="jb-print-docs-body" class="onlyprint">
<h1>How to contribute</h1>
<!-- Table of contents -->
<div id="print-main-content">
<div id="jb-print-toc">
<div>
<h2> Contents </h2>
</div>
<nav aria-label="Page">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#bug-report-and-feature-request">Bug report and feature request</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#code-contribution">Code contribution</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#documentation">Documentation</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#testing-a-benchmark">Testing a benchmark</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#basic-philosophy">Basic philosophy</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#test-for-solver-run">Test for Solver run</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#test-configuration">Test configuration</a></li>
</ul>
</li>
</ul>
</nav>
</div>
</div>
</div>
<div id="searchbox"></div>
<article class="bd-article">
<section id="how-to-contribute">
<span id="contrib-doc"></span><h1>How to contribute<a class="headerlink" href="#how-to-contribute" title="Link to this heading">#</a></h1>
<section id="bug-report-and-feature-request">
<h2>Bug report and feature request<a class="headerlink" href="#bug-report-and-feature-request" title="Link to this heading">#</a></h2>
<p>We use benchopt <a class="reference external" href="https://github.com/benchopt/benchopt/issues">GitHub repo</a> to track all bugs and feature requests; feel free to open
an issue if you have found a bug or wish to see a feature implemented.</p>
</section>
<section id="code-contribution">
<h2>Code contribution<a class="headerlink" href="#code-contribution" title="Link to this heading">#</a></h2>
<p>The preferred way to contribute to benchopt is to fork the <a class="reference external" href="https://github.com/benchopt/benchopt/">main
repository</a> on GitHub,
then submit a “Pull Request” (PR).</p>
<p>In the first few steps, we explain how to locally install benchopt, and
how to set up your git repository:</p>
<ol class="arabic">
<li><p><a class="reference external" href="https://github.com/join">Create an account</a> on
GitHub if you do not already have one.</p></li>
<li><p>Fork the <a class="reference external" href="https://github.com/benchopt/benchopt">project repository</a>: click on the ‘Fork’
button near the top of the page. This creates a copy of the code under your
account on the GitHub user account. For more details on how to fork a
repository see <a class="reference external" href="https://help.github.com/articles/fork-a-repo/">this guide</a>.</p></li>
<li><p>Clone your fork of the benchopt repo from your GitHub account to your
local disk:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><style type="text/css">
span.prompt1:before {
content: "$ ";
}
</style><span class="prompt1">git<span class="w"> </span>clone<span class="w"> </span>[email protected]:YourLogin/benchopt.git</span>
<span class="prompt1"><span class="nb">cd</span><span class="w"> </span>benchopt</span>
</pre></div></div></li>
</ol>
<ol class="arabic" id="upstream" start="4">
<li><p>Add the <code class="docutils literal notranslate"><span class="pre">upstream</span></code> remote. This saves a reference to the main
benchopt repository, which you can use to keep your repository
synchronized with the latest changes:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>remote<span class="w"> </span>add<span class="w"> </span>upstream<span class="w"> </span>https://github.com/benchopt/benchopt</span>
</pre></div></div></li>
<li><p>Check that the <cite>upstream</cite> and <cite>origin</cite> remote aliases are configured correctly
by running <cite>git remote -v</cite> which should display:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">origin</span> <span class="n">git</span><span class="nd">@github</span><span class="o">.</span><span class="n">com</span><span class="p">:</span><span class="n">YourLogin</span><span class="o">/</span><span class="n">benchopt</span><span class="o">.</span><span class="n">git</span> <span class="p">(</span><span class="n">fetch</span><span class="p">)</span>
<span class="n">origin</span> <span class="n">git</span><span class="nd">@github</span><span class="o">.</span><span class="n">com</span><span class="p">:</span><span class="n">YourLogin</span><span class="o">/</span><span class="n">benchopt</span><span class="o">.</span><span class="n">git</span> <span class="p">(</span><span class="n">push</span><span class="p">)</span>
<span class="n">upstream</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="n">benchopt</span><span class="o">/</span><span class="n">benchopt</span> <span class="p">(</span><span class="n">fetch</span><span class="p">)</span>
<span class="n">upstream</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="n">benchopt</span><span class="o">/</span><span class="n">benchopt</span> <span class="p">(</span><span class="n">push</span><span class="p">)</span>
</pre></div>
</div>
</li>
</ol>
<p>You should now have a working installation of benchopt, and your git
repository properly configured. The next steps now describe the process of
modifying code and submitting a PR:</p>
<ol class="arabic" start="6">
<li><p>Synchronize your <code class="docutils literal notranslate"><span class="pre">main</span></code> branch with the <code class="docutils literal notranslate"><span class="pre">upstream/main</span></code> branch,
more details on <a class="reference external" href="https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/syncing-a-fork">GitHub Docs</a>:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>switch<span class="w"> </span>main</span>
<span class="prompt1">git<span class="w"> </span>fetch<span class="w"> </span>upstream</span>
<span class="prompt1">git<span class="w"> </span>merge<span class="w"> </span>upstream/main</span>
</pre></div></div></li>
<li><p>Create a feature branch to hold your development changes:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>switch<span class="w"> </span>-c<span class="w"> </span>my_feature</span>
</pre></div></div><p>and start making changes. Always use a feature branch. It’s good
practice to never work on the <code class="docutils literal notranslate"><span class="pre">main</span></code> branch!</p>
</li>
<li><p>Develop the feature on your feature branch on your computer, using Git to
do the version control. When you’re done editing, add changed files using
<code class="docutils literal notranslate"><span class="pre">git</span> <span class="pre">add</span></code> and then <code class="docutils literal notranslate"><span class="pre">git</span> <span class="pre">commit</span></code>:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>add<span class="w"> </span>modified_files</span>
<span class="prompt1">git<span class="w"> </span>commit</span>
</pre></div></div><p>to record your changes in Git, then push the changes to your GitHub
account with:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>push<span class="w"> </span>-u<span class="w"> </span>origin<span class="w"> </span>my_feature</span>
</pre></div></div></li>
<li><p>Follow <a class="reference external" href="https://help.github.com/articles/creating-a-pull-request-from-a-fork">these</a> instructions
to create a pull request from your fork.</p></li>
</ol>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p>It is often helpful to keep your local feature branch synchronized with the latest
changes of the main benchopt repository:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">git<span class="w"> </span>fetch<span class="w"> </span>upstream</span>
<span class="prompt1">git<span class="w"> </span>merge<span class="w"> </span>upstream/main</span>
</pre></div></div></div>
</section>
<section id="documentation">
<h2>Documentation<a class="headerlink" href="#documentation" title="Link to this heading">#</a></h2>
<p>We are glad to accept any sort of documentation: function docstrings,
reStructuredText documents (like this one), tutorials, etc. reStructuredText
documents live in the source code repository under the <code class="docutils literal notranslate"><span class="pre">doc/</span></code> directory.</p>
<p>You can edit the documentation using any text editor, and then generate the
HTML output by typing, in a shell:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span class="prompt1">pip<span class="w"> </span>install<span class="w"> </span>benchopt<span class="o">[</span>doc<span class="o">]</span></span>
<span class="prompt1"><span class="nb">cd</span><span class="w"> </span>doc/</span>
<span class="prompt1">make<span class="w"> </span>html</span>
<span class="prompt1">firefox<span class="w"> </span>_build/html/index.html</span>
</pre></div></div></section>
<section id="testing-a-benchmark">
<span id="test-config"></span><h2>Testing a benchmark<a class="headerlink" href="#testing-a-benchmark" title="Link to this heading">#</a></h2>
<p>To ensure that the benchmark is reproducible and can be run by others, benchopt provides a set of tools to test that the benchmark is properly formatted and that it can be installed and run easily.
This page describes the various tweaks that can be made to the benchmark tests.</p>
<section id="basic-philosophy">
<h3>Basic philosophy<a class="headerlink" href="#basic-philosophy" title="Link to this heading">#</a></h3>
<p>The test run by <code class="docutils literal notranslate"><span class="pre">benchopt</span> <span class="pre">test</span></code> will make sure that:</p>
<ol class="arabic simple">
<li><p>All classes can be retrieved easily from the benchmark, even when some dependencies are missing.</p></li>
<li><p>The classes which have dependencies can be properly installed in a new environment and can then be imported.</p></li>
<li><p>The datasets are compatible with the objective API.</p></li>
<li><p>The solvers can all be run for a few number of iterations.</p></li>
<li><p>For convex problems, the tests will also check that the solution is optimal for a small enough problem. This test can be deactivated by setting the <code class="docutils literal notranslate"><span class="pre">Objective.is_convex</span></code> flag to <code class="docutils literal notranslate"><span class="pre">False</span></code>.</p></li>
</ol>
</section>
<section id="test-for-solver-run">
<h3>Test for Solver run<a class="headerlink" href="#test-for-solver-run" title="Link to this heading">#</a></h3>
<p>To ensure point 4, benchopt needs to load at least one small dataset that is compatible with each solver. This is why each benchmark needs to implement at least a <code class="docutils literal notranslate"><span class="pre">Simulated</span></code> dataset, that will be used for testing purposes. However, some solvers require different datasets and objective settings to be able to run. There are two ways to ensure that a solver can find an appropriate configuration:</p>
<ul class="simple">
<li><p>In the simulated dataset, one can add the class attribute <code class="docutils literal notranslate"><span class="pre">test_parameters</span></code>, which stands for a list of parameters that will be tried to test the solver. For each solver, at least one of these configurations should be compatible (not skipped). See benchopt.github.io/how.html#example-of-parametrized-simulated-dataset</p></li>
<li><p>The solvers can also provide a <code class="docutils literal notranslate"><span class="pre">test_config</span></code> class attribute, which is a dictionary with optional keys <code class="docutils literal notranslate"><span class="pre">dataset,</span> <span class="pre">objective</span></code>. The value of these keys should be a dictionary of parameters for the classes <code class="docutils literal notranslate"><span class="pre">Dataset</span></code> and <code class="docutils literal notranslate"><span class="pre">Objective</span></code>, that will be compatible with the given <code class="docutils literal notranslate"><span class="pre">Solver</span></code>.</p></li>
</ul>
</section>
<section id="test-configuration">
<h3>Test configuration<a class="headerlink" href="#test-configuration" title="Link to this heading">#</a></h3>
<p>In some cases, some tests should be <code class="docutils literal notranslate"><span class="pre">skip</span></code>, or <code class="docutils literal notranslate"><span class="pre">xfail</span></code> for a given benchmark. You can configure this for benchopt using a <code class="docutils literal notranslate"><span class="pre">test_config.py</span></code> file at the root of the benchmark. Implementing a function named <code class="docutils literal notranslate"><span class="pre">check_TESTNAME</span></code> with the same argument as the original test, you can then call <code class="docutils literal notranslate"><span class="pre">pytest.xfail</span></code> or <code class="docutils literal notranslate"><span class="pre">pytest.skip</span></code> to mark the test appropriately. For instance, to skip install tests for solver <code class="docutils literal notranslate"><span class="pre">XXX</span></code>, you can have the following:</p>
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># test_config.py</span>
<span class="kn">import</span> <span class="nn">pytest</span>
<span class="k">def</span> <span class="nf">check_test_solver_install</span><span class="p">(</span><span class="n">solver_class</span><span class="p">):</span>
<span class="k">if</span> <span class="n">solver_class</span><span class="o">.</span><span class="n">name</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">'xxx'</span><span class="p">:</span>
<span class="n">pytest</span><span class="o">.</span><span class="n">skip</span><span class="p">(</span><span class="s1">'XXX is not easy to install automatically.'</span><span class="p">)</span>
</pre></div>
</div>
</section>
</section>
</section>
</article>
<footer class="prev-next-footer d-print-none">
<div class="prev-next-area">
<a class="left-prev"
href="available_benchmarks.html"
title="previous page">
<i class="fa-solid fa-angle-left"></i>
<div class="prev-next-info">
<p class="prev-next-subtitle">previous</p>
<p class="prev-next-title">Available benchmarks</p>
</div>
</a>
<a class="right-next"
href="whats_new.html"
title="next page">
<div class="prev-next-info">
<p class="prev-next-subtitle">next</p>
<p class="prev-next-title">What’s new</p>
</div>
<i class="fa-solid fa-angle-right"></i>
</a>
</div>
</footer>
</div>
<dialog id="pst-secondary-sidebar-modal"></dialog>
<div id="pst-secondary-sidebar" class="bd-sidebar-secondary bd-toc"><div class="sidebar-secondary-items sidebar-secondary__inner">
<div class="sidebar-secondary-item">
<div class="page-toc tocsection onthispage">
<i class="fa-solid fa-list"></i> Contents
</div>
<nav class="bd-toc-nav page-toc">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#bug-report-and-feature-request">Bug report and feature request</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#code-contribution">Code contribution</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#documentation">Documentation</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#testing-a-benchmark">Testing a benchmark</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#basic-philosophy">Basic philosophy</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#test-for-solver-run">Test for Solver run</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#test-configuration">Test configuration</a></li>
</ul>
</li>
</ul>
</nav></div>
</div></div>
</div>
<footer class="bd-footer-content">
<div class="bd-footer-content__inner container">
<div class="footer-item">
<p class="component-author">
By Benchopt contributors
</p>
</div>
<div class="footer-item">
<p class="copyright">
© Copyright 2020-2024.
<br/>
</p>
</div>
<div class="footer-item">
</div>
<div class="footer-item">
</div>
</div>
</footer>
</main>
</div>
</div>
<!-- Scripts loaded after <body> so the DOM is not blocked -->
<script defer src="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
<script defer src="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
<footer class="bd-footer">
</footer>
</body>
</html>