DESCRIPTION

Package: TOmicsVis
Type: Package
Title: TOmicsVis An All-in-One Transcriptomic Analysis and Visualization R Package with shinyapp Interface
Version: 2.1.1
Authors@R: c(
    person(given = "Benben", family = "Miao", email = "benben.miao@outlook.com", 
    			 role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7307-1331")),
    person(given = 'Wei', family = 'Dong', email = 'dwei1220779@gmail.com', 
           role = c("aut"), comment = c(ORCID = '0000-0003-2201-7164'))
	)
Description: Transcriptome visualization from sample trait statistics to gene expression analysis. Six categories include "Samples Statistics", "Traits Analysis", "Differential Expression Analysis", "Advanced Analysis", "GO and KEGG Enrichment", "Tables Operations", with complete sample data.
URL: https://benben-miao.github.io/TOmicsVis/
BugReports: https://github.com/benben-miao/TOmicsVis/issues/
License: MIT + file LICENSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Encoding: UTF-8
LazyData: true
Depends: 
    R (>= 3.5),
    Biobase (>= 2.5.5),
    e1071 (>= 1.7-0)
Imports: 
    stats,
    utils,
    grid,
    graphics,
    grDevices,
    ggplot2,
    ggsci,
    reshape2,
    ggpubr,
    ggcorrplot,
    ggforce,
    vegan,
    venn,
    UpSetR,
    circlize,
    randomcoloR,
    ComplexHeatmap,
    EnhancedVolcano,
    GGally,
    survival,
    survminer,
    Rtsne,
    umap,
    dplyr,
    tidyr,
    clusterProfiler,
    enrichplot,
    ggnewscale,
    igraph,
    WGCNA,
    stringr,
    pheatmap,
    RColorBrewer,
    ggpolypath,
    factoextra,
    ggrepel,
    cowplot,
    ggplotify,
    plotrix,
    Mfuzz,
    shiny
Suggests: 
	knitr,
    rmarkdown,
    bs4Dash,
    DT,
    colourpicker,
    shinyWidgets
VignetteBuilder: knitr