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#355 fix chromosome comparison check #356

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merged 3 commits into from
Aug 16, 2023

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@calchoo calchoo commented Aug 16, 2023

Fix to get the chromosomes with a "chr" and without a "chr" to compare properly when aligning reads

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codecov bot commented Aug 16, 2023

Codecov Report

Patch coverage: 100.00% and project coverage change: -0.03% ⚠️

Comparison is base (d7e7c01) 86.92% compared to head (3bbe219) 86.90%.
Report is 1 commits behind head on develop_v3.

Additional details and impacted files
@@              Coverage Diff               @@
##           develop_v3     #356      +/-   ##
==============================================
- Coverage       86.92%   86.90%   -0.03%     
==============================================
  Files              57       57              
  Lines            9392     9392              
  Branches         2356     2356              
==============================================
- Hits             8164     8162       -2     
- Misses            753      754       +1     
- Partials          475      476       +1     
Flag Coverage Δ
unittests 86.90% <100.00%> (-0.03%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed Coverage Δ
src/mavis/validate/align.py 85.30% <100.00%> (ø)

... and 1 file with indirect coverage changes

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@calchoo calchoo merged commit 395e0fd into develop_v3 Aug 16, 2023
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2 participants