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TypeError: __init__() missing 1 required positional argument: 'args' #258

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imsarath opened this issue Sep 29, 2021 · 1 comment
Open

TypeError: __init__() missing 1 required positional argument: 'args' #258

imsarath opened this issue Sep 29, 2021 · 1 comment
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@calchoo
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awaiting reply waiting for reply from the reporter bug

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@imsarath
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Describe the bug

Encountered the following error msg when try to run mavis with the local scheduler.

File - "mavis/schedule/pipeline.py", line 887, in read_build_file
TypeError: __init__() missing 1 required positional argument: 'args'

To Reproduce
Try to run with a local scheduler

Expected behavior
Successful execution of mavis with local cores.

Versions (please complete the following information):

  • OS: Ubuntu 18.04.5 LTS
  • Python Version 3.6.13
  • MAVIS Version 2.2.10
  • Blat/BWA Version - 36/bwa-0.7.17
@imsarath imsarath added the bug label Sep 29, 2021
@mattdoug604
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Hi @imsarath, thanks for reporting this.

Version 2.2.10 of MAVIS is still under review. I would recommend using version 2.2.9 for now (https://github.com/bcgsc/mavis/releases/tag/v2.2.9)

@creisle creisle added the awaiting reply waiting for reply from the reporter label Oct 29, 2021
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@calchoo calchoo

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@creisle @mattdoug604 @imsarath @calchoo