From 5e25d961ccb42bdc2b4cd076791c39ba06635ae9 Mon Sep 17 00:00:00 2001 From: Vinicius Aguiar Date: Wed, 4 Oct 2023 10:11:29 -0300 Subject: [PATCH] feat: add update table metadata job (#423) --- basedosdados_api/api/v1/admin.py | 47 +- basedosdados_api/api/v1/models.py | 8 + basedosdados_api/api/v1/signals.py | 2 +- basedosdados_api/api/v1/tasks.py | 10 +- basedosdados_api/settings/base.py | 4 +- docker-compose.yaml | 21 +- poetry.lock | 793 +++++++++++++++++++++-------- pyproject.toml | 5 +- 8 files changed, 643 insertions(+), 247 deletions(-) diff --git a/basedosdados_api/api/v1/admin.py b/basedosdados_api/api/v1/admin.py index 74785b6e..a02371f2 100644 --- a/basedosdados_api/api/v1/admin.py +++ b/basedosdados_api/api/v1/admin.py @@ -11,11 +11,13 @@ from django.shortcuts import get_object_or_404, render from django.utils.html import format_html from google.api_core.exceptions import BadRequest, NotFound -from google.cloud.bigquery import Client +from google.cloud.bigquery import Client as GBQClient +from google.cloud.storage import Client as GCSClient from google.oauth2 import service_account from loguru import logger from modeltranslation.admin import TabbedTranslationAdmin, TranslationStackedInline from ordered_model.admin import OrderedInlineModelAdminMixin, OrderedStackedInline +from pandas import read_gbq from basedosdados_api.api.v1.filters import ( OrganizationImageFilter, @@ -223,30 +225,53 @@ def get_credentials(): return credentials -def update_table_metadata(modeladmin, request, queryset: QuerySet): +def update_table_metadata(modeladmin=None, request=None, queryset: QuerySet = None): """Update the metadata of selected tables in the database""" creds = get_credentials() - client = Client(credentials=creds) + bq_client = GBQClient(credentials=creds) + cs_client = GCSClient(credentials=creds) + + bucket_name = "basedosdados" + bucket = cs_client.get_bucket(bucket_name) tables: list[Table] = [] match str(modeladmin): - case "v1.TableAdmin": - tables = queryset case "v1.DatasetAdmin": - for database in queryset: - for table in database.tables.all(): - tables.append(table) + tables = Table.objects.filter( + dataset__in=queryset, + source_bucket_name__isnull=False, + ) + case "v1.TableAdmin": + tables = queryset.filter(source_bucket_name__isnull=False) + case _: + tables = Table.objects.filter(source_bucket_name__isnull=False) for table in tables: try: - bq_table = client.get_table(table.db_slug) + bq_table = bq_client.get_table(table.db_slug) table.number_rows = bq_table.num_rows or None table.number_columns = len(bq_table.schema) or None table.uncompressed_file_size = bq_table.num_bytes or None + if bq_table.table_type == "VIEW": + # Get number of rows from big query + table.number_rows = read_gbq( + """ + SELECT COUNT(1) AS n_rows + FROM `{table.db_slug}` + """ + ).loc[0, "n_rows"] + # Get file size in bytes from storage + file_size = 0 + folder_prefix = f"staging/{table.dataset.db_slug}/{table.db_slug}" + for blob in bucket.list_blobs(prefix=folder_prefix): + file_size += blob.size + table.uncompressed_file_size = file_size table.save() except (BadRequest, NotFound, ValueError) as e: - logger.debug(e) + logger.warning(e) + except Exception as e: + logger.error(e) update_table_metadata.short_description = "Atualizar metadados das tabelas" @@ -319,7 +344,7 @@ def reorder_columns(modeladmin, request, queryset): """ try: creds = get_credentials() - client = Client(credentials=creds) + client = GBQClient(credentials=creds) query_job = client.query(query, timeout=90) except Exception as e: messages.error( diff --git a/basedosdados_api/api/v1/models.py b/basedosdados_api/api/v1/models.py index dce94e49..6792b940 100644 --- a/basedosdados_api/api/v1/models.py +++ b/basedosdados_api/api/v1/models.py @@ -557,6 +557,10 @@ def db_slug(self): """Get the database slug""" return self.full_slug.replace("sa_br", "br") + @property + def get_graphql_db_slug(self): + return self.db_slug + @property def full_slug(self): """Get the full slug or Dataset""" @@ -970,6 +974,10 @@ def db_slug(self): bucket_slug = self.source_bucket_name return f"{bucket_slug}.{dataset_slug}.{table_slug}" + @property + def get_graphql_db_slug(self): + return self.db_slug + @property def partitions(self): """Returns a list of columns used to partition the table""" diff --git a/basedosdados_api/api/v1/signals.py b/basedosdados_api/api/v1/signals.py index f1a4106d..dd576249 100644 --- a/basedosdados_api/api/v1/signals.py +++ b/basedosdados_api/api/v1/signals.py @@ -53,7 +53,7 @@ def handle_save(self, sender, instance, raw, **kwargs): for ds in datasets or []: index.update_object(ds, using=using) except NotHandled as error: - logger.debug(error) + logger.warning(error) except Exception as error: logger.error(error) diff --git a/basedosdados_api/api/v1/tasks.py b/basedosdados_api/api/v1/tasks.py index 3ff650e5..0ba09a25 100644 --- a/basedosdados_api/api/v1/tasks.py +++ b/basedosdados_api/api/v1/tasks.py @@ -1,8 +1,16 @@ # -*- coding: utf-8 -*- from huey import crontab from huey.contrib.djhuey import periodic_task +from loguru import logger + +from basedosdados_api.api.v1.admin import _update_table_metadata @periodic_task(crontab(minute="*/10")) def every_ten_mins(): - print("It's been ten minutes!") + logger.info("Am I alive between these periods?") + + +@periodic_task(crontab(day_of_week="0", hour="0", minute="0")) +def update_table_metadata(): + _update_table_metadata() diff --git a/basedosdados_api/settings/base.py b/basedosdados_api/settings/base.py index b4973cc4..9d7b421c 100644 --- a/basedosdados_api/settings/base.py +++ b/basedosdados_api/settings/base.py @@ -413,7 +413,8 @@ "results": True, "immediate": False, "connection": { - "host": getenv("REDIS_URL", "localhost"), + # TODO: Delete this hotfix + "host": getenv("REDIS_URL", "localhost").replace("http://", ""), "port": getenv("REDIS_PORT", 6379), "db": getenv("REDIS_DB", 1), "read_timeout": 1, @@ -426,4 +427,3 @@ "periodic": True, }, } -HUEY = None diff --git a/docker-compose.yaml b/docker-compose.yaml index 30767d08..d8c22d37 100644 --- a/docker-compose.yaml +++ b/docker-compose.yaml @@ -1,9 +1,9 @@ version: "3" services: - elasticsearch: + index: image: docker.elastic.co/elasticsearch/elasticsearch:7.17.3 - container_name: elasticsearch + container_name: index environment: - cluster.name=docker-cluster - bootstrap.memory_lock=true @@ -26,6 +26,17 @@ services: retries: 5 start_period: 1m + queue: + image: redis:6.0 + container_name: queue + ports: + - 6379:6379 + healthcheck: + test: ["CMD", "redis-cli", "ping"] + interval: 10s + timeout: 5s + retries: 3 + database: image: postgres:14 container_name: database @@ -47,15 +58,15 @@ services: build: context: . dockerfile: Dockerfile - container_name: basedosdados_api + container_name: api env_file: - .env ports: - 8080:80 depends_on: - database: + index: condition: service_healthy - elasticsearch: + database: condition: service_healthy healthcheck: test: ["CMD", "curl", "-f", "http://localhost/healthcheck/"] diff --git a/poetry.lock b/poetry.lock index 09e7cdbf..9d4ae354 100644 --- a/poetry.lock +++ b/poetry.lock @@ -153,87 +153,102 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "3.3.0" description = "The Real First Universal Charset Detector. 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