From d726841b79b7c5544c7d64e0c071caf041ab6310 Mon Sep 17 00:00:00 2001 From: samgdotson Date: Mon, 9 Jan 2023 20:05:55 +0000 Subject: [PATCH] update docs at commit: Merge pull request #178 from yardasol/serpent-material-temps Serpent material temps beb9b1dc05ecbdecfeba3b2a1f54a13453ba5a5c --- master/.buildinfo | 2 +- .../.doctrees/devguide/contributing.doctree | Bin 23237 -> 23237 bytes master/.doctrees/devguide/index.doctree | Bin 5467 -> 5467 bytes master/.doctrees/environment.pickle | Bin 283990 -> 285800 bytes master/.doctrees/examples.doctree | Bin 6196 -> 6196 bytes .../fileformatspec/databasefile.doctree | Bin 31254 -> 31254 bytes master/.doctrees/fileformatspec/index.doctree | Bin 3365 -> 3365 bytes .../fileformatspec/inputfile.doctree | Bin 54146 -> 54146 bytes master/.doctrees/index.doctree | Bin 18384 -> 18384 bytes master/.doctrees/installation.doctree | Bin 31061 -> 31061 bytes master/.doctrees/overview.doctree | Bin 23266 -> 23266 bytes 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     inactive_cycles : int
         Number of inactive cycles.
 
-
     """
 
 
[docs] def __init__(self, @@ -172,7 +171,7 @@

Source code for saltproc.serpent_depcode

 
 
[docs] def create_runtime_matfile(self, file_lines): """Creates the runtime material file tracking burnable materials - ans inserts the path to this file in the Serpent2 runtime input file + and inserts the path to this file in the Serpent2 runtime input file Parameters ---------- @@ -185,6 +184,20 @@

Source code for saltproc.serpent_depcode

             Serpent2 runtime input file with updated material file path.
 
         """
+        burnable_materials_path, absolute_path = self._get_burnable_materials_file(file_lines)
+
+        # Create data directory
+        Path.mkdir(Path(self.runtime_matfile).parents[0], exist_ok=True)
+
+        # Get material cards
+        flines = self.read_plaintext_file(absolute_path)
+        self._get_burnable_material_card_data(flines)
+
+         # Create file with path for SaltProc rewritable iterative material file
+        shutil.copy2(absolute_path, self.runtime_matfile)
+        return [line.replace(burnable_materials_path, self.runtime_matfile) for line in file_lines]
+ + def _get_burnable_materials_file(self, file_lines): runtime_dir = Path(self.template_input_file_path).parents[0] include_card = [line for line in file_lines if line.startswith("include ")] if not include_card: @@ -196,17 +209,30 @@

Source code for saltproc.serpent_depcode

             absolute_path = (runtime_dir / burnable_materials_path)
         else:
             absolute_path = Path(burnable_materials_path)
-            with open(absolute_path) as f:
-                if 'mat ' not in f.read():
-                    raise IOError('Template file '
-                                  f'{self.template_input_file_path} includes '
-                                  'no file with materials description')
-        # Create data directory
-        Path.mkdir(Path(self.runtime_matfile).parents[0], exist_ok=True)
-
-        # Create file with path for SaltProc rewritable iterative material file
-        shutil.copy2(absolute_path, self.runtime_matfile)
-        return [line.replace(burnable_materials_path, self.runtime_matfile) for line in file_lines]
+ with open(absolute_path) as f: + if 'mat ' not in f.read(): + raise IOError('Template file ' + f'{self.template_input_file_path} includes ' + 'no file with materials description') + return burnable_materials_path, absolute_path.resolve() + + def _get_burnable_material_card_data(self, file_lines): + # Get data for matfile + mat_cards = \ + [line.split() for line in file_lines if line.startswith("mat ")] + + for card in mat_cards: + if 'fix' not in card: + raise IOError(f'"mat" card for burnable material "{card[1]}"' + ' does not have a "fix" option. Burnable materials' + ' in SaltProc must include the "fix" option. See' + ' the serpent wiki for more information:' + ' https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#mat') + # Get volume indices + card_volume_idx = [(card.index('vol') + 1) for card in mat_cards] + mat_names = [card[1] for card in mat_cards] + mat_data = zip(mat_cards, card_volume_idx)#, mat_extensions) + self._burnable_material_card_data = dict(zip(mat_names, mat_data))
[docs] def convert_nuclide_code_to_name(self, nuc_code): """Converts Serpent2 nuclide code to symbolic nuclide name. @@ -597,13 +623,17 @@

Source code for saltproc.serpent_depcode

             f.write('%% Material compositions (after %f days)\n\n'
                     % dep_end_time)
             nuc_code_map = self.map_nuclide_code_zam_to_serpent()
+            if not(hasattr(self, '_burnable_material_card_data')):
+                lines = self.read_plaintext_file(self.template_input_file_path)
+                _, abs_src_matfile = self.get_burnable_materials_file(lines)
+                file_lines = self.read_plaintext_file(abs_src_matfile)
+                self._get_burnable_material_card_data(file_lines)
             for name, mat in mats.items():
-                f.write('mat  %s  %5.9E burn 1 fix %3s %4i vol %7.5E\n' %
-                        (name,
-                         -mat.density,
-                         '09c',
-                         mat.temp,
-                         mat.vol))
+                mat_card, card_volume_idx = self._burnable_material_card_data[name]
+                mat_card[2] = str(-mat.density)
+                mat_card[card_volume_idx] = "%7.5E" % mat.vol
+                f.write(" ".join(mat_card))
+                f.write("\n")
                 for nuc_code, mass_fraction in mat.comp.items():
                     zam_code = pyname.zzaaam(nuc_code)
                     f.write('           %9s  %7.14E\n' %
diff --git a/master/_sources/releasenotes/v0.5.0.rst.txt b/master/_sources/releasenotes/v0.5.0.rst.txt
index b4e995d75..22a8e2a73 100644
--- a/master/_sources/releasenotes/v0.5.0.rst.txt
+++ b/master/_sources/releasenotes/v0.5.0.rst.txt
@@ -148,13 +148,15 @@ Python API Changes
     - ``write_mat_file()`` → ``update_depletable_materials()``
     - ``get_nuc_name()`` →  ``convert_nuclide_code_to_name()``
     - ``convert_nuclide_name_serpent_to_zam()`` → ``convert_nuclide_code_to_zam()`` 
-    - ``change_sim_par()`` →  (deleted)
-    -  (new function) →  ``get_neutron_settings()``
     - ``create_iter_matfile()`` → ``create_runtime_matfile()``
     - ``replace_burnup_parameters()`` → ``set_power_load()``
     - ``write_depcode_input()`` →  ``write_runtime_input()``
     - ``iter_inputfile``  →  ``runtime_inputfile``
     - ``iter_matfile``  →  ``runtime_matfile``
+    - ``change_sim_par()`` →  (deleted)
+    - (new function) →  ``get_neutron_settings()``
+    - (new function) →  ``_get_burnable_materials_file()`` 
+    - (new function) →  ``_get_burnable_material_card_data()``
 
 
   - ``OpenMCDepcode`` is a ``Depcode`` subclass that interfaces with ``openmc``. This class implements the following functions 
diff --git a/master/releasenotes/v0.5.0.html b/master/releasenotes/v0.5.0.html
index 3fb35cf8f..79fe8d39b 100644
--- a/master/releasenotes/v0.5.0.html
+++ b/master/releasenotes/v0.5.0.html
@@ -204,13 +204,15 @@ 

Python API Changeswrite_mat_file()update_depletable_materials()

  • get_nuc_name()convert_nuclide_code_to_name()

  • convert_nuclide_name_serpent_to_zam()convert_nuclide_code_to_zam()

  • -
  • change_sim_par() → (deleted)

  • -
  • (new function) → get_neutron_settings()

  • create_iter_matfile()create_runtime_matfile()

  • replace_burnup_parameters()set_power_load()

  • write_depcode_input()write_runtime_input()

  • iter_inputfileruntime_inputfile

  • iter_matfileruntime_matfile

  • +
  • change_sim_par() → (deleted)

  • +
  • (new function) → get_neutron_settings()

  • +
  • (new function) → _get_burnable_materials_file()

  • +
  • (new function) → _get_burnable_material_card_data()

  • OpenMCDepcode is a Depcode subclass that interfaces with openmc. This class implements the following functions diff --git a/master/searchindex.js b/master/searchindex.js index b137706a5..24d4db941 100644 --- a/master/searchindex.js +++ b/master/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["devguide/contributing", "devguide/index", "examples", "fileformatspec/databasefile", "fileformatspec/index", "fileformatspec/inputfile", "index", "installation", "overview", "releasenotes/index", "releasenotes/template", "releasenotes/v0.3.0", "releasenotes/v0.4.0", "releasenotes/v0.5.0", "src/index", "src/modules", "src/saltproc", "src/saltproc.abc", "src/saltproc.app", "src/saltproc.materialflow", "src/saltproc.openmc_depcode", "src/saltproc.openmc_deplete", "src/saltproc.process", "src/saltproc.reactor", "src/saltproc.separator", "src/saltproc.serpent_depcode", "src/saltproc.simulation", "src/saltproc.sparger", "src/saltproc.version"], "filenames": ["devguide/contributing.rst", "devguide/index.rst", "examples.rst", 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"module-saltproc.separator"]], "temp_room (saltproc.separator.separator attribute)": [[24, "saltproc.separator.Separator.temp_room"]], "serpentdepcode (class in saltproc.serpent_depcode)": [[25, "saltproc.serpent_depcode.SerpentDepcode"]], "__init__() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.__init__"]], "active_cycles (saltproc.serpent_depcode.serpentdepcode attribute)": [[25, "saltproc.serpent_depcode.SerpentDepcode.active_cycles"]], "convert_nuclide_code_to_name() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name"]], "convert_nuclide_code_to_zam() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam"]], "create_runtime_matfile() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile"]], "get_neutron_settings() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings"]], "inactive_cycles (saltproc.serpent_depcode.serpentdepcode attribute)": [[25, "saltproc.serpent_depcode.SerpentDepcode.inactive_cycles"]], "insert_path_to_geometry() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry"]], "map_nuclide_code_zam_to_serpent() (saltproc.serpent_depcode.serpentdepcode method)": [[25, "saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent"]], "neutronics_parameters (saltproc.serpent_depcode.serpentdepcode attribute)": [[25, "saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters"]], "npop (saltproc.serpent_depcode.serpentdepcode attribute)": [[25, "saltproc.serpent_depcode.SerpentDepcode.npop"]], "read_depleted_materials() (saltproc.serpent_depcode.serpentdepcode method)": [[25, 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(saltproc.sparger.sparger method)": [[27, "saltproc.sparger.Sparger.__init__"]], "area (saltproc.sparger.sparger attribute)": [[27, "saltproc.sparger.Sparger.area"]], "calc_rem_efficiency() (saltproc.sparger.sparger method)": [[27, "saltproc.sparger.Sparger.calc_rem_efficiency"]], "calculate_removal_efficiency() (saltproc.sparger.sparger method)": [[27, "saltproc.sparger.Sparger.calculate_removal_efficiency"]], "db (saltproc.sparger.sparger attribute)": [[27, "saltproc.sparger.Sparger.db"]], "description() (saltproc.sparger.sparger method)": [[27, "id0"], [27, "saltproc.sparger.Sparger.description"]], "diffusivity (saltproc.sparger.sparger attribute)": [[27, "id1"], [27, "saltproc.sparger.Sparger.diffusivity"]], "dp (saltproc.sparger.sparger attribute)": [[27, "saltproc.sparger.Sparger.dp"]], "eff() (saltproc.sparger.sparger method)": [[27, "id2"], [27, "saltproc.sparger.Sparger.eff"]], "eps() (saltproc.sparger.sparger method)": [[27, "id3"], [27, "saltproc.sparger.Sparger.eps"]], 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"module-saltproc.version"]]}}) \ No newline at end of file diff --git a/master/src/saltproc.serpent_depcode.html b/master/src/saltproc.serpent_depcode.html index b9fcde193..2cc85f6e2 100644 --- a/master/src/saltproc.serpent_depcode.html +++ b/master/src/saltproc.serpent_depcode.html @@ -225,7 +225,7 @@

    create_runtime_matfile(file_lines)[source]

    Creates the runtime material file tracking burnable materials -ans inserts the path to this file in the Serpent2 runtime input file

    +and inserts the path to this file in the Serpent2 runtime input file

    Parameters

    file_lines (list of str) – Serpent2 runtime input file.

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