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-      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
+  <title>app &mdash; Saltproc 0.5.dev documentation</title>
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+      <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
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+            <a href="../index.html" class="icon icon-home"> Saltproc
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-  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
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+          <a href="../index.html">Saltproc</a>
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-      <li><a href="../../index.html" class="icon icon-home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">saltproc.app</li>
+      <li><a href="../index.html" class="icon icon-home"></a></li>
+          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
+      <li class="breadcrumb-item active">app</li>
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@@ -74,8 +76,9 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">pathlib</span> <span class="kn">import</span> <span class="n">Path</span>
+  <h1>Source code for app</h1><div class="highlight"><pre>
+<span></span><span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">from</span> <span class="nn">pathlib</span> <span class="kn">import</span> <span class="n">Path</span>
 <span class="kn">from</span> <span class="nn">copy</span> <span class="kn">import</span> <span class="n">deepcopy</span>
 
 <span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
@@ -86,7 +89,6 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">json</span><span class="o">,</span> <span class="nn">jsonschema</span>
 <span class="kn">import</span> <span class="nn">gc</span>
 <span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
-<span class="kn">import</span> <span class="nn">pydotplus</span>
 
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">SerpentDepcode</span><span class="p">,</span> <span class="n">OpenMCDepcode</span><span class="p">,</span> <span class="n">Simulation</span><span class="p">,</span> <span class="n">Reactor</span>
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span><span class="p">,</span> <span class="n">Sparger</span><span class="p">,</span> <span class="n">Separator</span><span class="p">,</span> <span class="n">Materialflow</span>
@@ -104,10 +106,16 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
 <span class="n">DAY_UNITS</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="s1">&#39;day&#39;</span><span class="p">)</span>
 <span class="n">YEAR_UNITS</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="s1">&#39;year&#39;</span><span class="p">,</span> <span class="s1">&#39;yr&#39;</span><span class="p">)</span>
 
-<div class="viewcode-block" id="run"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">():</span>
+<span class="n">_SECONDS_PER_DAY</span> <span class="o">=</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">24</span>
+<span class="n">_MINUTES_PER_DAY</span> <span class="o">=</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">24</span>
+<span class="n">_HOURS_PER_DAY</span> <span class="o">=</span> <span class="mi">24</span>
+<span class="n">_DAYS_PER_YEAR</span> <span class="o">=</span> <span class="mf">365.25</span>
+
+<div class="viewcode-block" id="run"><a class="viewcode-back" href="../api/generated/app.run.html#app.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot; Inititializes main run&quot;&quot;&quot;</span>
     <span class="n">threads</span><span class="p">,</span> <span class="n">saltproc_input</span> <span class="o">=</span> <span class="n">parse_arguments</span><span class="p">()</span>
-    <span class="n">input_path</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> <span class="n">object_input</span> <span class="o">=</span> \
+    <span class="n">input_path</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> \
+        <span class="n">rebuild_saltproc_results</span><span class="p">,</span> <span class="n">run_without_reprocessing</span><span class="p">,</span> <span class="n">object_input</span> <span class="o">=</span> \
         <span class="n">read_main_input</span><span class="p">(</span><span class="n">saltproc_input</span><span class="p">)</span>
     <span class="n">_print_simulation_input_info</span><span class="p">(</span><span class="n">object_input</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">object_input</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
     <span class="c1"># Intializing objects</span>
@@ -117,18 +125,22 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
     <span class="n">msr</span> <span class="o">=</span> <span class="n">_create_reactor_object</span><span class="p">(</span><span class="n">object_input</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
 
     <span class="c1"># Check: Restarting previous simulation or starting new?</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">check_restart</span><span class="p">()</span>
+    <span class="n">failed_step</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_restart</span><span class="p">()</span>
     <span class="c1"># Run sequence</span>
     <span class="c1"># Start sequence</span>
-    <span class="k">for</span> <span class="n">step_idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">msr</span><span class="o">.</span><span class="n">depletion_timesteps</span><span class="p">)):</span>
+    <span class="k">for</span> <span class="n">step_idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">failed_step</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">msr</span><span class="o">.</span><span class="n">depletion_timesteps</span><span class="p">)):</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n\n\n</span><span class="s2">Step #</span><span class="si">%i</span><span class="s2"> has been started&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">step_idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
         <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">write_runtime_input</span><span class="p">(</span><span class="n">msr</span><span class="p">,</span>
                                                    <span class="n">step_idx</span><span class="p">,</span>
                                                    <span class="n">simulation</span><span class="o">.</span><span class="n">restart_flag</span><span class="p">)</span>
-        <span class="n">depcode</span><span class="o">.</span><span class="n">run_depletion_step</span><span class="p">(</span><span class="n">mpi_args</span><span class="p">,</span> <span class="n">threads</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">rebuild_saltproc_results</span><span class="p">:</span>
+            <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">rebuild_simulation_files</span><span class="p">(</span><span class="n">step_idx</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">depcode</span><span class="o">.</span><span class="n">run_depletion_step</span><span class="p">(</span><span class="n">mpi_args</span><span class="p">,</span> <span class="n">threads</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">step_idx</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">simulation</span><span class="o">.</span><span class="n">restart_flag</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>  <span class="c1"># First step</span>
             <span class="c1"># Read general simulation data which never changes</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_init_info</span><span class="p">()</span>
+            <span class="n">simulation</span><span class="o">.</span><span class="n">store_depcode_metadata</span><span class="p">()</span>
             <span class="c1"># Parse and store data for initial state (beginning of step_idx)</span>
             <span class="n">mats</span> <span class="o">=</span> <span class="n">depcode</span><span class="o">.</span><span class="n">read_depleted_materials</span><span class="p">(</span><span class="kc">False</span><span class="p">)</span>
             <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">step_idx</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
@@ -136,37 +148,46 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="c1"># Main sequence</span>
         <span class="n">mats</span> <span class="o">=</span> <span class="n">depcode</span><span class="o">.</span><span class="n">read_depleted_materials</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
         <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_step_info</span><span class="p">()</span>
+        <span class="n">simulation</span><span class="o">.</span><span class="n">store_step_neutronics_parameters</span><span class="p">()</span>
+        <span class="n">simulation</span><span class="o">.</span><span class="n">store_step_metadata</span><span class="p">()</span>
+
         <span class="c1"># Reprocessing here</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel before reproc: </span><span class="si">%f</span><span class="s2"> g, </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois before reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_streams</span><span class="p">,</span> <span class="n">extracted_mass</span> <span class="o">=</span> <span class="n">reprocess_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span>
-                                                            <span class="n">process_file</span><span class="p">,</span>
-                                                            <span class="n">dot_file</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after reproc: </span><span class="si">%f</span><span class="s2"> g, </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_and_feed_streams</span> <span class="o">=</span> <span class="n">refill_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span>
-                                                  <span class="n">extracted_mass</span><span class="p">,</span>
-                                                  <span class="n">waste_streams</span><span class="p">,</span>
-                                                  <span class="n">process_file</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after REFILL: </span><span class="si">%f</span><span class="s2"> g, </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after REFILL %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Removed mass [g]:&quot;</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">)</span>
-        <span class="c1"># Store in DB after reprocessing and refill (right before next depl)</span>
+        <span class="k">if</span> <span class="n">run_without_reprocessing</span><span class="p">:</span>
+            <span class="n">waste_and_feed_streams</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="n">waste_streams</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="n">extracted_mass</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass and volume of &#39;</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s1"> before reproc: </span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="si">}</span><span class="s1"> g, &#39;</span><span class="p">,</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span><span class="si">}</span><span class="s1"> cm3&#39;</span><span class="p">)</span>
+            <span class="n">waste_streams</span><span class="p">,</span> <span class="n">extracted_mass</span> <span class="o">=</span> <span class="n">reprocess_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span>
+                                                                <span class="n">process_file</span><span class="p">,</span>
+                                                                <span class="n">dot_file</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass and volume of &#39;</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s1"> after reproc: </span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="si">}</span><span class="s1"> g, &#39;</span><span class="p">,</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span><span class="si">}</span><span class="s1"> cm3&#39;</span><span class="p">)</span>
+
+            <span class="n">waste_and_feed_streams</span> <span class="o">=</span> <span class="n">refill_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span>
+                                                      <span class="n">extracted_mass</span><span class="p">,</span>
+                                                      <span class="n">waste_streams</span><span class="p">,</span>
+                                                      <span class="n">process_file</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass and volume of &#39;</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">key</span><span class="si">}</span><span class="s1"> after refill: </span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="si">}</span><span class="s1"> g, &#39;</span><span class="p">,</span>
+                      <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span><span class="si">}</span><span class="s1"> cm3&#39;</span><span class="p">)</span>
+
+            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Removed mass [g]:&quot;</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">)</span>
+
+         <span class="c1"># Store in DB after reprocessing and refill (right before next depl)</span>
         <span class="n">simulation</span><span class="o">.</span><span class="n">store_after_repr</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">waste_and_feed_streams</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">)</span>
         <span class="n">depcode</span><span class="o">.</span><span class="n">update_depletable_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
+
+        <span class="c1"># Preserve depletion and transport result and input files</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">rebuild_saltproc_results</span><span class="p">:</span>
+            <span class="n">depcode</span><span class="o">.</span><span class="n">preserve_simulation_files</span><span class="p">(</span><span class="n">step_idx</span><span class="p">)</span>
+
         <span class="k">del</span> <span class="n">mats</span><span class="p">,</span> <span class="n">waste_streams</span><span class="p">,</span> <span class="n">waste_and_feed_streams</span><span class="p">,</span> <span class="n">extracted_mass</span>
         <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
         <span class="c1"># Switch to another geometry?</span>
@@ -174,14 +195,9 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
             <span class="n">depcode</span><span class="o">.</span><span class="n">switch_to_next_geometry</span><span class="p">()</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Time at the end of current depletion step: </span><span class="si">%f</span><span class="s2">d&quot;</span> <span class="o">%</span>
               <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Simulation succeeded.</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
-        <span class="sd">&#39;&#39;&#39;print(&quot;Reactor object data.\n&quot;,</span>
-<span class="sd">        msr.mass_flowrate,</span>
-<span class="sd">              msr.power_levels,</span>
-<span class="sd">              msr.depletion_timesteps)&#39;&#39;&#39;</span></div>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Simulation succeeded.</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span></div>
 
-
-<div class="viewcode-block" id="parse_arguments"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.parse_arguments">[docs]</a><span class="k">def</span> <span class="nf">parse_arguments</span><span class="p">():</span>
+<span class="k">def</span> <span class="nf">parse_arguments</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;Parses arguments from command line.</span>
 
 <span class="sd">    Parameters</span>
@@ -206,10 +222,10 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                         <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                         <span class="n">help</span><span class="o">=</span><span class="s1">&#39;Path and name of SaltProc main input file&#39;</span><span class="p">)</span>
     <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span>
-    <span class="k">return</span> <span class="n">args</span><span class="o">.</span><span class="n">threads</span><span class="p">,</span> <span class="n">args</span><span class="o">.</span><span class="n">i</span></div>
+    <span class="k">return</span> <span class="n">args</span><span class="o">.</span><span class="n">threads</span><span class="p">,</span> <span class="n">args</span><span class="o">.</span><span class="n">i</span>
 
 
-<div class="viewcode-block" id="read_main_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_main_input">[docs]</a><span class="k">def</span> <span class="nf">read_main_input</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">):</span>
+<div class="viewcode-block" id="read_main_input"><a class="viewcode-back" href="../api/generated/app.read_main_input.html#app.read_main_input">[docs]</a><span class="k">def</span> <span class="nf">read_main_input</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Reads main SaltProc input file (json format).</span>
 
 <span class="sd">    Parameters</span>
@@ -228,6 +244,12 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
 <span class="sd">    mpi_args : list of str</span>
 <span class="sd">        Arguments for running simulations on supercomputers using mpiexec or</span>
 <span class="sd">        similar programs.</span>
+<span class="sd">    rebuild_saltproc_results : bool</span>
+<span class="sd">        Flag to indicate whether or not to rebuild SaltProc results file</span>
+<span class="sd">        from existing depcode results</span>
+<span class="sd">    run_without_reprocessing : bool</span>
+<span class="sd">        Flag to indicate whether or not to run the depletion code in</span>
+<span class="sd">        SaltProc without applying the reprocessing system.</span>
 <span class="sd">    object_inputs : 3-tuple of dict</span>
 <span class="sd">        tuple containing the inputs for constructing the</span>
 <span class="sd">        :class:`~saltproc.Depcode`, :class:`~saltproc.Simulation`, and</span>
@@ -252,7 +274,8 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                 <span class="n">traceback</span><span class="o">.</span><span class="n">print_exc</span><span class="p">()</span>
 
         <span class="c1"># Global input path</span>
-        <span class="n">input_path</span> <span class="o">=</span> <span class="p">(</span><span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span> <span class="o">/</span> <span class="n">Path</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">parents</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+        <span class="n">input_path</span> <span class="o">=</span> <span class="p">(</span><span class="n">Path</span><span class="o">.</span><span class="n">cwd</span><span class="p">()</span> <span class="o">/</span> <span class="n">Path</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">)</span><span class="o">.</span><span class="n">parents</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+        <span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">input_path</span><span class="p">)</span>
 
         <span class="c1"># Saltproc settings</span>
         <span class="n">process_file</span> <span class="o">=</span> <span class="nb">str</span><span class="p">((</span><span class="n">input_path</span> <span class="o">/</span>
@@ -272,6 +295,12 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">Path</span><span class="p">(</span><span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;output_path&#39;</span><span class="p">])</span><span class="o">.</span><span class="n">exists</span><span class="p">():</span>
             <span class="n">Path</span><span class="p">(</span><span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;output_path&#39;</span><span class="p">])</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 
+        <span class="c1"># Rebuild saltproc results?</span>
+        <span class="n">rebuild_saltproc_results</span> <span class="o">=</span> <span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;rebuild_saltproc_results&#39;</span><span class="p">]</span>
+
+        <span class="c1"># Run without reprocessing?</span>
+        <span class="n">run_without_reprocessing</span> <span class="o">=</span> <span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;run_without_reprocessing&#39;</span><span class="p">]</span>
+
         <span class="c1"># Class settings</span>
         <span class="n">depcode_input</span> <span class="o">=</span> <span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;depcode&#39;</span><span class="p">]</span>
         <span class="n">simulation_input</span> <span class="o">=</span> <span class="n">input_parameters</span><span class="p">[</span><span class="s1">&#39;simulation&#39;</span><span class="p">]</span>
@@ -290,6 +319,16 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
             <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;chain_file_path&#39;</span><span class="p">]</span> <span class="o">=</span> \
                 <span class="nb">str</span><span class="p">((</span><span class="n">input_path</span> <span class="o">/</span>
                  <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;chain_file_path&#39;</span><span class="p">])</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+
+            <span class="c1"># process depletion_settings</span>
+            <span class="n">depletion_settings</span> <span class="o">=</span> <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;depletion_settings&#39;</span><span class="p">]</span>
+            <span class="n">operator_kwargs</span> <span class="o">=</span> <span class="n">depletion_settings</span><span class="p">[</span><span class="s1">&#39;operator_kwargs&#39;</span><span class="p">]</span>
+            <span class="k">if</span> <span class="n">operator_kwargs</span> <span class="o">!=</span> <span class="p">{}:</span>
+                <span class="n">fission_q_path</span> <span class="o">=</span> <span class="n">operator_kwargs</span><span class="p">[</span><span class="s1">&#39;fission_q&#39;</span><span class="p">]</span>
+                <span class="k">if</span> <span class="n">fission_q_path</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+                    <span class="n">operator_kwargs</span><span class="p">[</span><span class="s1">&#39;fission_q&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">input_path</span> <span class="o">/</span> <span class="n">fission_q_path</span><span class="p">)</span>
+                <span class="n">depletion_settings</span><span class="p">[</span><span class="s1">&#39;operator_kwargs&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">operator_kwargs</span>
+            <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;depletion_settings&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depletion_settings</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">codename</span><span class="si">}</span><span class="s1"> is not a supported depletion code.&#39;</span>
                              <span class="s1">&#39; Accepts: &quot;serpent&quot; or &quot;openmc&quot;.&#39;</span><span class="p">)</span>
@@ -311,34 +350,34 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="n">reactor_input</span> <span class="o">=</span> <span class="n">_process_main_input_reactor_params</span><span class="p">(</span>
             <span class="n">reactor_input</span><span class="p">,</span> <span class="n">n_depletion_steps</span><span class="p">,</span> <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;codename&#39;</span><span class="p">])</span>
 
-        <span class="k">return</span> <span class="n">input_path</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> <span class="p">(</span>
+        <span class="k">return</span> <span class="n">input_path</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> <span class="n">rebuild_saltproc_results</span><span class="p">,</span> <span class="n">run_without_reprocessing</span><span class="p">,</span> <span class="p">(</span>
             <span class="n">depcode_input</span><span class="p">,</span> <span class="n">simulation_input</span><span class="p">,</span> <span class="n">reactor_input</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="_print_simulation_input_info"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._print_simulation_input_info">[docs]</a><span class="k">def</span> <span class="nf">_print_simulation_input_info</span><span class="p">(</span><span class="n">simulation_input</span><span class="p">,</span> <span class="n">depcode_input</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_print_simulation_input_info</span><span class="p">(</span><span class="n">simulation_input</span><span class="p">,</span> <span class="n">depcode_input</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Helper function for `run()` &quot;&quot;&quot;</span>
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Initiating Saltproc:</span><span class="se">\n</span><span class="s1">&#39;</span>
           <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Restart = &#39;</span> <span class="o">+</span>
           <span class="nb">str</span><span class="p">(</span><span class="n">simulation_input</span><span class="p">[</span><span class="s1">&#39;restart_flag&#39;</span><span class="p">])</span> <span class="o">+</span>
           <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
           <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Template File Path  = &#39;</span> <span class="o">+</span>
-          <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;template_input_file_path&#39;</span><span class="p">]</span> <span class="o">+</span>
+          <span class="nb">str</span><span class="p">(</span><span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;template_input_file_path&#39;</span><span class="p">])</span> <span class="o">+</span>
           <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
           <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Output HDF5 database Path = &#39;</span> <span class="o">+</span>
           <span class="n">simulation_input</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">]</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span></div>
+          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="_create_depcode_object"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._create_depcode_object">[docs]</a><span class="k">def</span> <span class="nf">_create_depcode_object</span><span class="p">(</span><span class="n">depcode_input</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_create_depcode_object</span><span class="p">(</span><span class="n">depcode_input</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Helper function for `run()` &quot;&quot;&quot;</span>
     <span class="n">codename</span> <span class="o">=</span> <span class="n">depcode_input</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s1">&#39;codename&#39;</span><span class="p">)</span>
     <span class="n">depcode</span> <span class="o">=</span> <span class="n">CODENAME_MAP</span><span class="p">[</span><span class="n">codename</span><span class="p">]</span>
     <span class="n">depcode</span> <span class="o">=</span> <span class="n">depcode</span><span class="p">(</span><span class="o">**</span><span class="n">depcode_input</span><span class="p">)</span>
     <span class="n">depcode_input</span><span class="p">[</span><span class="s1">&#39;codename&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">codename</span>
 
-    <span class="k">return</span> <span class="n">depcode</span></div>
+    <span class="k">return</span> <span class="n">depcode</span>
 
 
-<div class="viewcode-block" id="_create_simulation_object"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._create_simulation_object">[docs]</a><span class="k">def</span> <span class="nf">_create_simulation_object</span><span class="p">(</span><span class="n">simulation_input</span><span class="p">,</span> <span class="n">depcode</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_create_simulation_object</span><span class="p">(</span><span class="n">simulation_input</span><span class="p">,</span> <span class="n">depcode</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Helper function for `run()` &quot;&quot;&quot;</span>
     <span class="n">simulation</span> <span class="o">=</span> <span class="n">Simulation</span><span class="p">(</span>
         <span class="n">sim_name</span><span class="o">=</span><span class="s1">&#39;Super test&#39;</span><span class="p">,</span>
@@ -346,16 +385,16 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="n">restart_flag</span><span class="o">=</span><span class="n">simulation_input</span><span class="p">[</span><span class="s1">&#39;restart_flag&#39;</span><span class="p">],</span>
         <span class="n">adjust_geo</span><span class="o">=</span><span class="n">simulation_input</span><span class="p">[</span><span class="s1">&#39;adjust_geo&#39;</span><span class="p">],</span>
         <span class="n">db_path</span><span class="o">=</span><span class="n">simulation_input</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">simulation</span></div>
+    <span class="k">return</span> <span class="n">simulation</span>
 
 
-<div class="viewcode-block" id="_create_reactor_object"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._create_reactor_object">[docs]</a><span class="k">def</span> <span class="nf">_create_reactor_object</span><span class="p">(</span><span class="n">reactor_input</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_create_reactor_object</span><span class="p">(</span><span class="n">reactor_input</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Helper function for `run()` &quot;&quot;&quot;</span>
     <span class="n">msr</span> <span class="o">=</span> <span class="n">Reactor</span><span class="p">(</span><span class="o">**</span><span class="n">reactor_input</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">msr</span></div>
+    <span class="k">return</span> <span class="n">msr</span>
 
 
-<div class="viewcode-block" id="_process_main_input_reactor_params"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._process_main_input_reactor_params">[docs]</a><span class="k">def</span> <span class="nf">_process_main_input_reactor_params</span><span class="p">(</span><span class="n">reactor_input</span><span class="p">,</span>
+<span class="k">def</span> <span class="nf">_process_main_input_reactor_params</span><span class="p">(</span><span class="n">reactor_input</span><span class="p">,</span>
                                        <span class="n">n_depletion_steps</span><span class="p">,</span>
                                        <span class="n">codename</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;</span>
@@ -380,13 +419,13 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                                                      <span class="n">depletion_timesteps</span><span class="p">,</span>
                                                      <span class="n">codename</span><span class="p">)</span>
 
-    <span class="n">reactor_input</span><span class="p">[</span><span class="s1">&#39;depletion_timesteps&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">depletion_timesteps</span><span class="p">)</span>
-    <span class="n">reactor_input</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">power_levels</span><span class="p">)</span>
+    <span class="n">reactor_input</span><span class="p">[</span><span class="s1">&#39;depletion_timesteps&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depletion_timesteps</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+    <span class="n">reactor_input</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">power_levels</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
 
-    <span class="k">return</span> <span class="n">reactor_input</span></div>
+    <span class="k">return</span> <span class="n">reactor_input</span>
 
 
-<div class="viewcode-block" id="_validate_depletion_timesteps_power_levels"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._validate_depletion_timesteps_power_levels">[docs]</a><span class="k">def</span> <span class="nf">_validate_depletion_timesteps_power_levels</span><span class="p">(</span><span class="n">n_depletion_steps</span><span class="p">,</span>
+<span class="k">def</span> <span class="nf">_validate_depletion_timesteps_power_levels</span><span class="p">(</span><span class="n">n_depletion_steps</span><span class="p">,</span>
                                                <span class="n">depletion_timesteps</span><span class="p">,</span>
                                                <span class="n">power_levels</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Ensure that the number of depletion timesteps and power levels match</span>
@@ -408,7 +447,7 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                          <span class="sa">f</span><span class="s1">&#39; entries and power_levels has </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">power_levels</span><span class="p">)</span><span class="si">}</span><span class="s1">&#39;</span>
                          <span class="s1">&#39; entries.&#39;</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">depletion_timesteps</span><span class="p">,</span> <span class="n">power_levels</span></div>
+        <span class="k">return</span> <span class="n">depletion_timesteps</span><span class="p">,</span> <span class="n">power_levels</span>
 
 
 <span class="k">def</span> <span class="nf">_convert_cumulative_to_stepwise</span><span class="p">(</span><span class="n">depletion_timesteps</span><span class="p">):</span>
@@ -416,25 +455,24 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="n">depletion_timesteps</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">ts</span><span class="p">))</span>
 
 
-<div class="viewcode-block" id="_scale_depletion_timesteps"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app._scale_depletion_timesteps">[docs]</a><span class="k">def</span> <span class="nf">_scale_depletion_timesteps</span><span class="p">(</span><span class="n">timestep_units</span><span class="p">,</span> <span class="n">depletion_timesteps</span><span class="p">,</span> <span class="n">codename</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_scale_depletion_timesteps</span><span class="p">(</span><span class="n">timestep_units</span><span class="p">,</span> <span class="n">depletion_timesteps</span><span class="p">,</span> <span class="n">codename</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Scale `depletion_timesteps` to the correct value based on `timestep_units`&quot;&quot;&quot;</span>
     <span class="c1"># serpent base timestep units are days or mwd/kg</span>
     <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">timestep_units</span> <span class="ow">in</span> <span class="n">DAY_UNITS</span><span class="p">)</span> <span class="ow">and</span> <span class="n">timestep_units</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;mwd/kg&#39;</span> <span class="ow">and</span> <span class="n">codename</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
         <span class="k">if</span> <span class="n">timestep_units</span> <span class="ow">in</span> <span class="n">SECOND_UNITS</span><span class="p">:</span>
-            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">24</span>
+            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="n">_SECONDS_PER_DAY</span>
         <span class="k">elif</span> <span class="n">timestep_units</span> <span class="ow">in</span> <span class="n">MINUTE_UNITS</span><span class="p">:</span>
-            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="mi">60</span> <span class="o">*</span> <span class="mi">24</span>
+            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="n">_MINUTES_PER_DAY</span>
         <span class="k">elif</span> <span class="n">timestep_units</span> <span class="ow">in</span> <span class="n">HOUR_UNITS</span><span class="p">:</span>
-            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="mi">24</span>
+            <span class="n">depletion_timesteps</span> <span class="o">/=</span> <span class="n">_HOURS_PER_DAY</span>
         <span class="k">elif</span> <span class="n">timestep_units</span> <span class="ow">in</span> <span class="n">YEAR_UNITS</span><span class="p">:</span>
-            <span class="n">depletion_timesteps</span> <span class="o">*=</span> <span class="mf">365.25</span>
+            <span class="n">depletion_timesteps</span> <span class="o">*=</span> <span class="n">_DAYS_PER_YEAR</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;Unrecognized time unit: </span><span class="si">{</span><span class="n">timestep_units</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">)</span>
 
-    <span class="k">return</span> <span class="n">depletion_timesteps</span></div>
+    <span class="k">return</span> <span class="n">depletion_timesteps</span>
 
-
-<div class="viewcode-block" id="reprocess_materials"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.reprocess_materials">[docs]</a><span class="k">def</span> <span class="nf">reprocess_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">):</span>
+<div class="viewcode-block" id="reprocess_materials"><a class="viewcode-back" href="../api/generated/app.reprocess_materials.html#app.reprocess_materials">[docs]</a><span class="k">def</span> <span class="nf">reprocess_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">process_file</span><span class="p">,</span> <span class="n">dot_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Applies extraction reprocessing scheme to burnable materials.</span>
 
 <span class="sd">    Parameters</span>
@@ -483,7 +521,7 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Mass of material &#39;</span><span class="si">{</span><span class="n">mat_name</span><span class="si">}</span><span class="s2">&#39; before reprocessing: &quot;</span>
               <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">inmass</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span><span class="si">}</span><span class="s2"> g&quot;</span><span class="p">)</span>
 
-        <span class="k">if</span> <span class="n">mat_name</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span> <span class="ow">and</span> <span class="n">material_for_extraction</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">mat_name</span> <span class="o">==</span> <span class="n">material_for_extraction</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">path</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">extraction_process_paths</span><span class="p">):</span>
                 <span class="n">thru_flows</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">initial_material</span><span class="p">)</span>
 
@@ -491,7 +529,6 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                     <span class="c1"># Calculate fraction of the flow going to the process proc</span>
                     <span class="n">divisor</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">processes</span><span class="p">[</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">/</span>
                                     <span class="n">processes</span><span class="p">[</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;Process: </span><span class="si">{</span><span class="n">proc</span><span class="si">}</span><span class="s1">, divisor=</span><span class="si">{</span><span class="n">divisor</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">)</span>
 
                     <span class="c1"># Calculate waste stream and thru flow on proccess proc</span>
                     <span class="n">thru_flow</span><span class="p">,</span> <span class="n">waste_stream</span> <span class="o">=</span> \
@@ -510,23 +547,6 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                 <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="si">}</span><span class="s1"> Materal mass on path </span><span class="si">{</span><span class="n">i</span><span class="si">}</span><span class="s1">: &#39;</span>
                       <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">thru_flows</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">)</span>
 
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass balance: </span><span class="si">%f</span><span class="s1"> g = </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">inmass</span><span class="p">[</span><span class="n">mat_name</span><span class="p">],</span>
-                   <span class="n">mats</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;waste_entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;waste_bypass&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-
-        <span class="c1"># Bootstrap for many materials</span>
-        <span class="k">if</span> <span class="n">mat_name</span> <span class="o">==</span> <span class="s1">&#39;ctrlPois&#39;</span><span class="p">:</span>
-            <span class="n">thru_flow</span><span class="p">,</span> <span class="n">waste_stream</span> <span class="o">=</span> \
-                <span class="n">processes</span><span class="p">[</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">process_material</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mat_name</span><span class="p">])</span>
-
-            <span class="n">waste_streams</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">waste_stream</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">thru_flow</span>
-
         <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span> <span class="o">=</span> \
             <span class="n">inmass</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span> <span class="o">-</span> <span class="nb">float</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
 
@@ -538,7 +558,7 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">waste_streams</span><span class="p">,</span> <span class="n">extracted_mass</span></div>
 
 
-<div class="viewcode-block" id="get_extraction_processes"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.get_extraction_processes">[docs]</a><span class="k">def</span> <span class="nf">get_extraction_processes</span><span class="p">(</span><span class="n">process_file</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">get_extraction_processes</span><span class="p">(</span><span class="n">process_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Parses ``extraction_processes`` objects from the `.json` file describing</span>
 <span class="sd">    processing system objects.</span>
 
@@ -569,7 +589,6 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="k">for</span> <span class="n">mat_name</span><span class="p">,</span> <span class="n">procs</span> <span class="ow">in</span> <span class="n">j</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="n">extraction_processes</span><span class="p">[</span><span class="n">mat_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
             <span class="k">for</span> <span class="n">proc_name</span><span class="p">,</span> <span class="n">proc_data</span> <span class="ow">in</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;extraction_processes&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Processs object data: &quot;</span><span class="p">,</span> <span class="n">proc_data</span><span class="p">)</span>
                 <span class="n">st</span> <span class="o">=</span> <span class="n">proc_data</span><span class="p">[</span><span class="s1">&#39;efficiency&#39;</span><span class="p">]</span>
                 <span class="k">if</span> <span class="n">proc_name</span> <span class="o">==</span> <span class="s1">&#39;sparger&#39;</span> <span class="ow">and</span> <span class="n">st</span> <span class="o">==</span> <span class="s2">&quot;self&quot;</span><span class="p">:</span>
                     <span class="n">extraction_processes</span><span class="p">[</span><span class="n">mat_name</span><span class="p">][</span><span class="n">proc_name</span><span class="p">]</span> <span class="o">=</span> \
@@ -582,10 +601,10 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
                         <span class="n">Process</span><span class="p">(</span><span class="o">**</span><span class="n">proc_data</span><span class="p">)</span>
 
         <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">extraction_processes</span></div>
+        <span class="k">return</span> <span class="n">extraction_processes</span>
 
 
-<div class="viewcode-block" id="get_extraction_process_paths"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.get_extraction_process_paths">[docs]</a><span class="k">def</span> <span class="nf">get_extraction_process_paths</span><span class="p">(</span><span class="n">dot_file</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">get_extraction_process_paths</span><span class="p">(</span><span class="n">dot_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Reads directed graph that describes fuel reprocessing system structure</span>
 <span class="sd">    from a `*.dot` file.</span>
 
@@ -603,8 +622,7 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
 <span class="sd">        `core_inlet`.</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">graph_pydot</span> <span class="o">=</span> <span class="n">pydotplus</span><span class="o">.</span><span class="n">graph_from_dot_file</span><span class="p">(</span><span class="n">dot_file</span><span class="p">)</span>
-    <span class="n">digraph</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">drawing</span><span class="o">.</span><span class="n">nx_pydot</span><span class="o">.</span><span class="n">from_pydot</span><span class="p">(</span><span class="n">graph_pydot</span><span class="p">)</span>
+    <span class="n">digraph</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">drawing</span><span class="o">.</span><span class="n">nx_pydot</span><span class="o">.</span><span class="n">read_dot</span><span class="p">(</span><span class="n">dot_file</span><span class="p">)</span>
     <span class="n">mat_name</span> <span class="o">=</span> <span class="n">digraph</span><span class="o">.</span><span class="n">name</span>
     <span class="c1"># Iterate over all possible paths between &#39;core_outlet&#39; and &#39;core_inlet&#39;</span>
     <span class="n">all_simple_paths</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">all_simple_paths</span><span class="p">(</span><span class="n">digraph</span><span class="p">,</span>
@@ -613,10 +631,10 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
     <span class="n">extraction_process_paths</span> <span class="o">=</span> <span class="p">[]</span>
     <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">all_simple_paths</span><span class="p">:</span>
         <span class="n">extraction_process_paths</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">mat_name</span><span class="p">,</span> <span class="n">extraction_process_paths</span></div>
+    <span class="k">return</span> <span class="n">mat_name</span><span class="p">,</span> <span class="n">extraction_process_paths</span>
 
 
-<div class="viewcode-block" id="refill_materials"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.refill_materials">[docs]</a><span class="k">def</span> <span class="nf">refill_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">,</span> <span class="n">waste_streams</span><span class="p">,</span> <span class="n">process_file</span><span class="p">):</span>
+<div class="viewcode-block" id="refill_materials"><a class="viewcode-back" href="../api/generated/app.refill_materials.html#app.refill_materials">[docs]</a><span class="k">def</span> <span class="nf">refill_materials</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">,</span> <span class="n">waste_streams</span><span class="p">,</span> <span class="n">process_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Makes up material loss in removal processes by adding fresh fuel.</span>
 
 <span class="sd">    Parameters</span>
@@ -644,16 +662,14 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
 <span class="sd">    -------</span>
 <span class="sd">    waste_streams : dict of str to dict</span>
 <span class="sd">        Superset of the input parameter `waste_streams`. Dictionary has</span>
-<span class="sd">        keys for feed streams that map to :classs:`Materialflow` objects</span>
+<span class="sd">        keys for feed streams that map to :class:`Materialflow` objects</span>
 <span class="sd">        representing those material feed streams.</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel before refilling: ^^^&#39;</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
     <span class="n">feeds</span> <span class="o">=</span> <span class="n">get_feeds</span><span class="p">(</span><span class="n">process_file</span><span class="p">)</span>
     <span class="n">refill_mats</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
     <span class="c1"># Get feed group for each material</span>
     <span class="k">for</span> <span class="n">mat</span><span class="p">,</span> <span class="n">mat_feeds</span> <span class="ow">in</span> <span class="n">feeds</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-        <span class="n">refill_mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
         <span class="c1"># Get each feed in the feed group</span>
         <span class="k">for</span> <span class="n">feed_name</span><span class="p">,</span> <span class="n">feed</span> <span class="ow">in</span> <span class="n">mat_feeds</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="n">scale</span> <span class="o">=</span> <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">/</span> <span class="n">feed</span><span class="o">.</span><span class="n">mass</span>
@@ -662,12 +678,10 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="n">mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">+=</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refilled fresh material: </span><span class="si">%s</span><span class="s1"> </span><span class="si">%f</span><span class="s1"> g&#39;</span> <span class="o">%</span>
               <span class="p">(</span><span class="n">mat</span><span class="p">,</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refill Material: ^^^&#39;</span><span class="p">,</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel after refill: ^^^&#39;</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
     <span class="k">return</span> <span class="n">waste_streams</span></div>
 
 
-<div class="viewcode-block" id="get_feeds"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.get_feeds">[docs]</a><span class="k">def</span> <span class="nf">get_feeds</span><span class="p">(</span><span class="n">process_file</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">get_feeds</span><span class="p">(</span><span class="n">process_file</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Parses ``feed`` objects from `.json` file describing processing system</span>
 <span class="sd">    objects.</span>
 
@@ -698,12 +712,11 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
         <span class="k">for</span> <span class="n">mat</span> <span class="ow">in</span> <span class="n">j</span><span class="p">:</span>
             <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
             <span class="k">for</span> <span class="n">feed_name</span><span class="p">,</span> <span class="n">feed_data</span> <span class="ow">in</span> <span class="n">j</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="s1">&#39;feeds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="n">nucvec</span> <span class="o">=</span> <span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;comp&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">feed_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">feed_name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;mass&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">feed_name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;density&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">feed_name</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;volume&#39;</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">feeds</span></div>
+                <span class="n">comp</span> <span class="o">=</span> <span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;comp&#39;</span><span class="p">]</span>
+                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">feed_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">comp</span><span class="o">=</span><span class="n">comp</span><span class="p">,</span>
+                                                     <span class="n">density</span><span class="o">=</span><span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;density&#39;</span><span class="p">],</span>
+                                                     <span class="n">volume</span><span class="o">=</span><span class="n">feed_data</span><span class="p">[</span><span class="s1">&#39;volume&#39;</span><span class="p">])</span>
+        <span class="k">return</span> <span class="n">feeds</span>
 </pre></div>
 
            </div>
@@ -734,11 +747,6 @@ <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="app.html">master</a></dd>
diff --git a/master/_modules/index.html b/master/_modules/index.html
index 6dda424db..526211118 100644
--- a/master/_modules/index.html
+++ b/master/_modules/index.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -74,12 +76,11 @@
            <div itemprop="articleBody">
              
   <h1>All modules for which code is available</h1>
-<ul><li><a href="saltproc/abc.html">saltproc.abc</a></li>
-<li><a href="saltproc/app.html">saltproc.app</a></li>
+<ul><li><a href="app.html">app</a></li>
+<li><a href="saltproc/depcode.html">saltproc.depcode</a></li>
 <li><a href="saltproc/materialflow.html">saltproc.materialflow</a></li>
 <li><a href="saltproc/openmc_depcode.html">saltproc.openmc_depcode</a></li>
 <li><a href="saltproc/process.html">saltproc.process</a></li>
-<li><a href="saltproc/reactor.html">saltproc.reactor</a></li>
 <li><a href="saltproc/separator.html">saltproc.separator</a></li>
 <li><a href="saltproc/serpent_depcode.html">saltproc.serpent_depcode</a></li>
 <li><a href="saltproc/simulation.html">saltproc.simulation</a></li>
@@ -114,11 +115,6 @@ <h1>All modules for which code is available</h1>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="index.html">master</a></dd>
diff --git a/master/_modules/saltproc/abc.html b/master/_modules/saltproc/abc.html
deleted file mode 100644
index f9590d36e..000000000
--- a/master/_modules/saltproc/abc.html
+++ /dev/null
@@ -1,282 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.abc &mdash; Saltproc 0.5.dev documentation</title>
-      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-        <script src="../../_static/jquery.js"></script>
-        <script src="../../_static/underscore.js"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
-        <script src="../../_static/doctools.js"></script>
-        <script src="../../_static/sphinx_highlight.js"></script>
-    <script src="../../_static/js/theme.js"></script>
-    <link rel="index" title="Index" href="../../genindex.html" />
-    <link rel="search" title="Search" href="../../search.html" /> 
-</head>
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-  <div class="wy-grid-for-nav">
-    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
-      <div class="wy-side-scroll">
-        <div class="wy-side-nav-search" >
-            <a href="../../index.html" class="icon icon-home"> Saltproc
-          </a>
-              <div class="version">
-                0.5.dev
-              </div>
-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
-    <input type="hidden" name="check_keywords" value="yes" />
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-  </form>
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-<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
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-      <li class="breadcrumb-item active">saltproc.abc</li>
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.abc</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
-
-<div class="viewcode-block" id="Depcode"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode">[docs]</a><span class="k">class</span> <span class="nc">Depcode</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Abstract interface for running depletion steps.</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    -----------</span>
-<span class="sd">    neutronics_parameters : dict of str to type</span>
-<span class="sd">        Holds depletion step neutronics parameters. Parameter names are keys</span>
-<span class="sd">        and parameter values are values.</span>
-<span class="sd">    step_metadata : dict of str to type</span>
-<span class="sd">        Holds depletion code depletion step metadata. Metadata labels are keys</span>
-<span class="sd">        and metadata values are values.</span>
-<span class="sd">    runtime_inputfile : str</span>
-<span class="sd">        Path to input file used to run depletion step.</span>
-<span class="sd">    runtime_matfile : str</span>
-<span class="sd">        Path to material file containing burnable materials used to</span>
-<span class="sd">        run depletion step.</span>
-<span class="sd">    npop : int</span>
-<span class="sd">        Size of neutron population per cycle</span>
-<span class="sd">    active_cycles : int</span>
-<span class="sd">        Number of active cycles.</span>
-<span class="sd">    inactive_cycles : int</span>
-<span class="sd">        Number of inactive cycles.</span>
-
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Depcode.__init__"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">codename</span><span class="p">,</span>
-                 <span class="n">output_path</span><span class="p">,</span>
-                 <span class="n">exec_path</span><span class="p">,</span>
-                 <span class="n">template_input_file_path</span><span class="p">,</span>
-                 <span class="n">geo_file_paths</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initialize a Depcode object.</span>
-
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           output_path : str</span>
-<span class="sd">               Path to results storage directory.</span>
-<span class="sd">           codename : str</span>
-<span class="sd">               Name of depletion code.</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to depletion code executable.</span>
-<span class="sd">           template_input_file_path : str or dict of str to str</span>
-<span class="sd">               Path(s) to depletion code input file(s), or a dictionary where</span>
-<span class="sd">               the input type (e.g. material, geometry, settings, etc.) as a</span>
-<span class="sd">               string are keys, and the path to the input file are values.</span>
-<span class="sd">               Type depends on depletion code in use.</span>
-<span class="sd">           geo_file_paths : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">codename</span> <span class="o">=</span> <span class="n">codename</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">=</span> <span class="n">output_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span> <span class="o">=</span> <span class="n">exec_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span> <span class="o">=</span> <span class="n">template_input_file_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span> <span class="o">=</span> <span class="n">geo_file_paths</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span> <span class="o">=</span> <span class="kc">None</span></div>
-
-<div class="viewcode-block" id="Depcode.read_step_metadata"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.read_step_metadata">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads depletion code&#39;s depletion step metadata and stores it in the</span>
-<span class="sd">        :class:`Depcode` object&#39;s :attr:`step_metadata` attribute.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.read_neutronics_parameters"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.read_neutronics_parameters">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads depletion code&#39;s depletion step neutronics parameters and</span>
-<span class="sd">        stores them in :class:`Depcode` object&#39;s</span>
-<span class="sd">        :attr:`neutronics_parameters` attribute.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.read_depleted_materials"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.read_depleted_materials">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads depleted materials from the depletion step results</span>
-<span class="sd">        and returns a dictionary containing them.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        read_at_end : bool, optional</span>
-<span class="sd">            If `True`, the function reads data at the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        depleted_materials : dict of str to Materialflow</span>
-<span class="sd">            Dictionary containing depleted materials.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                :class:`Materialflow` object holding material composition and properties.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.run_depletion_step"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.run_depletion_step">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> <span class="n">threads</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Runs a depletion step as a subprocess with the given parameters.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mpi_args : list of str</span>
-<span class="sd">            Arguments for running simulations on supercomputers using</span>
-<span class="sd">            ``mpiexec`` or similar programs.</span>
-<span class="sd">        threads : int</span>
-<span class="sd">            Threads to use for shared-memory parallelism</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.switch_to_next_geometry">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Changes the geometry used in the depletion code simulation to the</span>
-<span class="sd">        next geometry file in ``geo_file_paths``</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.write_runtime_input"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.write_runtime_input">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Write input file(s) for running depletion step</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.update_depletable_materials"><a class="viewcode-back" href="../../src/saltproc.abc.html#saltproc.abc.Depcode.update_depletable_materials">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Update material file with reprocessed material compositions.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary containing reprocessed material compositions.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                :class:`Materialflow` object holding composition and properties.</span>
-<span class="sd">        dep_end_time : float</span>
-<span class="sd">            Current time at the end of the depletion step (d).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div></div>
-
-
-
-</pre></div>
-
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-    v: master
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diff --git a/master/_modules/saltproc/depcode.html b/master/_modules/saltproc/depcode.html
new file mode 100644
index 000000000..880d62643
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+<!DOCTYPE html>
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+  <meta charset="utf-8" />
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+          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
+      <li class="breadcrumb-item active">saltproc.depcode</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
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+           <div itemprop="articleBody">
+             
+  <h1>Source code for saltproc.depcode</h1><div class="highlight"><pre>
+<span></span><span class="kn">import</span> <span class="nn">sys</span>
+<span class="kn">import</span> <span class="nn">subprocess</span>
+<span class="kn">import</span> <span class="nn">shutil</span>
+
+<span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
+
+<span class="k">try</span><span class="p">:</span>
+    <span class="kn">from</span> <span class="nn">mpi4py</span> <span class="kn">import</span> <span class="n">MPI</span>
+    <span class="kn">import</span> <span class="nn">os</span>
+    <span class="n">MPI_ON</span> <span class="o">=</span> <span class="kc">True</span>
+<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
+    <span class="n">MPI_ON</span> <span class="o">=</span> <span class="kc">False</span>
+
+
+<div class="viewcode-block" id="Depcode"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode">[docs]</a><span class="k">class</span> <span class="nc">Depcode</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
+    <span class="sd">&quot;&quot;&quot;Abstract interface for running depletion steps.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    output_path : str</span>
+<span class="sd">        Path to results storage directory.</span>
+<span class="sd">    codename : str</span>
+<span class="sd">        Name of depletion code.</span>
+<span class="sd">    exec_path : str</span>
+<span class="sd">        Path to depletion code executable.</span>
+<span class="sd">    template_input_file_path : str or dict of str to str</span>
+<span class="sd">        Path(s) to depletion code input file(s), or a dictionary where</span>
+<span class="sd">        the input type (e.g. material, geometry, settings, etc.) as a</span>
+<span class="sd">        string are keys, and the path to the input file are values.</span>
+<span class="sd">        Type depends on depletion code in use.</span>
+<span class="sd">    geo_file_paths : str or list, optional</span>
+<span class="sd">        Path to file that contains the reactor geometry.</span>
+<span class="sd">        List of `str` if reactivity control by</span>
+<span class="sd">        switching geometry is `On` or just `str` otherwise.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    -----------</span>
+<span class="sd">    neutronics_parameters : dict of str to type</span>
+<span class="sd">        Holds depletion step neutronics parameters. Parameter names are keys</span>
+<span class="sd">        and parameter values are values.</span>
+<span class="sd">    step_metadata : dict of str to type</span>
+<span class="sd">        Holds depletion code depletion step metadata. Metadata labels are keys</span>
+<span class="sd">        and metadata values are values.</span>
+<span class="sd">    depcode_metadata : dict of str to type</span>
+<span class="sd">        Holds depletion code simulation metadata. Metadata labels are keys</span>
+<span class="sd">        and metadata values are values.</span>
+<span class="sd">    runtime_inputfile : str</span>
+<span class="sd">        Path to input file used to run depletion step.</span>
+<span class="sd">    runtime_matfile : str</span>
+<span class="sd">        Path to material file containing burnable materials used to</span>
+<span class="sd">        run depletion step.</span>
+<span class="sd">    npop : int</span>
+<span class="sd">        Size of neutron population per cycle</span>
+<span class="sd">    active_cycles : int</span>
+<span class="sd">        Number of active cycles.</span>
+<span class="sd">    inactive_cycles : int</span>
+<span class="sd">        Number of inactive cycles.</span>
+
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+                 <span class="n">codename</span><span class="p">,</span>
+                 <span class="n">output_path</span><span class="p">,</span>
+                 <span class="n">exec_path</span><span class="p">,</span>
+                 <span class="n">template_input_file_path</span><span class="p">,</span>
+                 <span class="n">geo_file_paths</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Initialize a Depcode object.</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">codename</span> <span class="o">=</span> <span class="n">codename</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">=</span> <span class="n">output_path</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span> <span class="o">=</span> <span class="n">exec_path</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span> <span class="o">=</span> <span class="n">template_input_file_path</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span> <span class="o">=</span> <span class="n">geo_file_paths</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">=</span> <span class="kc">None</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span> <span class="o">=</span> <span class="kc">None</span>
+
+<div class="viewcode-block" id="Depcode.read_depcode_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.read_depcode_metadata">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">read_depcode_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Read depletion code metadata, and store it in the :class:`Depcode`</span>
+<span class="sd">        object&#39;s :attr:`depcode_metadata` attribute&quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.read_step_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.read_step_metadata">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads depletion step metadata and stores it in the</span>
+<span class="sd">        :class:`Depcode` object&#39;s :attr:`step_metadata` attribute.</span>
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.read_neutronics_parameters"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.read_neutronics_parameters">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads depletion code&#39;s depletion step neutronics parameters and</span>
+<span class="sd">        stores them in :class:`Depcode` object&#39;s</span>
+<span class="sd">        :attr:`neutronics_parameters` attribute.</span>
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.read_depleted_materials"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.read_depleted_materials">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads depleted materials from the depletion step results</span>
+<span class="sd">        and returns a dictionary containing them.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        read_at_end : bool, optional</span>
+<span class="sd">            If `True`, the function reads data at the end of the</span>
+<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
+<span class="sd">            beginning of the depletion step.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        depleted_materials : dict of str to Materialflow</span>
+<span class="sd">            Dictionary containing depleted materials.</span>
+
+<span class="sd">            ``key``</span>
+<span class="sd">                Name of burnable material.</span>
+<span class="sd">            ``value``</span>
+<span class="sd">                :class:`Materialflow` object holding material composition and properties.</span>
+
+<span class="sd">        &quot;&quot;&quot;</span></div>
+<div class="viewcode-block" id="Depcode.run_depletion_step"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.run_depletion_step">[docs]</a>    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="p">,</span> <span class="n">args</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Runs a depletion step as a subprocess with the given parameters.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        mpi_args : list of str</span>
+<span class="sd">            Arguments for running simulations on supercomputers using</span>
+<span class="sd">            ``mpiexec`` or similar programs.</span>
+<span class="sd">        args : list of str</span>
+<span class="sd">            Arguments for running depletion step.</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">MPI_ON</span><span class="p">:</span>
+                <span class="n">env</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">env</span> <span class="o">=</span> <span class="kc">None</span>
+            <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
+                <span class="n">args</span><span class="p">,</span>
+                <span class="n">check</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                <span class="n">cwd</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span><span class="p">,</span>
+                <span class="n">stdout</span><span class="o">=</span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">,</span>
+                <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">STDOUT</span><span class="p">,</span>
+                <span class="n">env</span><span class="o">=</span><span class="n">env</span><span class="p">)</span>
+            <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;Finished </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="si">}</span><span class="s1"> Run&#39;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">error</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="n">error</span><span class="o">.</span><span class="n">output</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span>
+            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> RUN FAILED</span><span class="se">\n</span><span class="s1"> see error message above&#39;</span>
+                               <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span></div>
+
+<div class="viewcode-block" id="Depcode.switch_to_next_geometry"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.switch_to_next_geometry">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Changes the geometry used in the depletion code simulation to the</span>
+<span class="sd">        next geometry file in ``geo_file_paths``</span>
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.write_runtime_input"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.write_runtime_input">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Write input file(s) for running depletion step</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        reactor : Reactor</span>
+<span class="sd">            Contains information about power load curve and cumulative</span>
+<span class="sd">            depletion time for the integration test.</span>
+<span class="sd">        dep_step : int</span>
+<span class="sd">            Current depletion time step.</span>
+<span class="sd">        restart : bool</span>
+<span class="sd">            Is the current simulation restarted?</span>
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.update_depletable_materials"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.update_depletable_materials">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Update material file with reprocessed material compositions.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        mats : dict of str to Materialflow</span>
+<span class="sd">            Dictionary containing reprocessed material compositions.</span>
+
+<span class="sd">            ``key``</span>
+<span class="sd">                Name of burnable material.</span>
+<span class="sd">            ``value``</span>
+<span class="sd">                :class:`Materialflow` object holding composition and properties.</span>
+<span class="sd">        dep_end_time : float</span>
+<span class="sd">            Current time at the end of the depletion step (d).</span>
+
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.read_plaintext_file"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.read_plaintext_file">[docs]</a>    <span class="k">def</span> <span class="nf">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_path</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads the content of a plaintext file for use by other methods.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        file_path : str</span>
+<span class="sd">            Path to file.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        file_lines : list of str</span>
+<span class="sd">            File lines.</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">file_lines</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
+            <span class="n">file_lines</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">file_lines</span></div>
+
+<div class="viewcode-block" id="Depcode.nuclide_code_to_name"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.nuclide_code_to_name">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">nuclide_code_to_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Converts depcode nuclide code to symbolic nuclide name.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        nuc_code : str</span>
+<span class="sd">            Nuclide code</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        nuc_name : str</span>
+<span class="sd">            Symbolic nuclide name (`Am242m1`).</span>
+
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.name_to_nuclide_code"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.name_to_nuclide_code">[docs]</a>    <span class="nd">@abstractmethod</span>
+    <span class="k">def</span> <span class="nf">name_to_nuclide_code</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nucname</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Converts depcode nuclide name to ZA nuclide code</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        nucname : str</span>
+<span class="sd">            Nuclide namce</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        nuc_name : str</span>
+<span class="sd">            ZA nuclide code</span>
+
+<span class="sd">        &quot;&quot;&quot;</span></div>
+
+<div class="viewcode-block" id="Depcode.preserve_simulation_files"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.preserve_simulation_files">[docs]</a>    <span class="k">def</span> <span class="nf">preserve_simulation_files</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Move simulation input and output files</span>
+<span class="sd">        to unique a directory</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        step_idx : int</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">step_results_dir</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="sa">f</span><span class="s1">&#39;step_</span><span class="si">{</span><span class="n">step_idx</span><span class="si">}</span><span class="s1">_data&#39;</span>
+        <span class="n">step_results_dir</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+        <span class="n">file_path</span> <span class="o">=</span> <span class="k">lambda</span> <span class="n">file</span> <span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="n">file</span>
+        <span class="n">output_paths</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span><span class="p">))</span>
+        <span class="n">input_paths</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span><span class="p">))</span>
+        <span class="k">for</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">fname</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">output_paths</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span><span class="p">):</span>
+            <span class="n">file_path</span><span class="o">.</span><span class="n">rename</span><span class="p">(</span><span class="n">step_results_dir</span> <span class="o">/</span> <span class="n">fname</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">fname</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">input_paths</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span><span class="p">):</span>
+            <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">file_path</span><span class="p">)</span>
+            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">step_results_dir</span> <span class="o">/</span> <span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">out_file</span><span class="p">:</span>
+                <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
+
+<div class="viewcode-block" id="Depcode.rebuild_simulation_files"><a class="viewcode-back" href="../../api/generated/saltproc.Depcode.html#saltproc.Depcode.rebuild_simulation_files">[docs]</a>    <span class="k">def</span> <span class="nf">rebuild_simulation_files</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Move simulation input and output files</span>
+<span class="sd">        from unique directory to runtime directory</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        step_idx : int</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">step_results_dir</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="sa">f</span><span class="s1">&#39;step_</span><span class="si">{</span><span class="n">step_idx</span><span class="si">}</span><span class="s1">_data&#39;</span>
+
+        <span class="n">file_path</span> <span class="o">=</span> <span class="k">lambda</span> <span class="n">file</span> <span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="n">step_results_dir</span> <span class="o">/</span> <span class="n">file</span>
+        <span class="n">output_paths</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span><span class="p">))</span>
+        <span class="n">input_paths</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span><span class="p">))</span>
+        <span class="k">for</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">fname</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">output_paths</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span><span class="p">):</span>
+            <span class="n">shutil</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="n">fname</span><span class="p">))</span>
+
+        <span class="k">for</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">fname</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">input_paths</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span><span class="p">):</span>
+            <span class="n">shutil</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="n">fname</span><span class="p">))</span></div></div>
+</pre></div>
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p></p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  
+<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+  <span class="rst-current-version" data-toggle="rst-current-version">
+    <span class="fa fa-book"> Other Versions</span>
+    v: master
+    <span class="fa fa-caret-down"></span>
+  </span>
+  <div class="rst-other-versions">
+    <dl>
+      <dt>Branches</dt>
+      <dd><a href="depcode.html">master</a></dd>
+    </dl>
+  </div>
+</div><script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/master/_modules/saltproc/materialflow.html b/master/_modules/saltproc/materialflow.html
index 3afd605d6..c6c228848 100644
--- a/master/_modules/saltproc/materialflow.html
+++ b/master/_modules/saltproc/materialflow.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -77,79 +79,129 @@
   <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;Materialflow module&quot;&quot;&quot;</span>
 <span class="kn">import</span> <span class="nn">copy</span>
+<span class="kn">import</span> <span class="nn">math</span>
 <span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">Counter</span>
 
-<span class="kn">from</span> <span class="nn">pyne.material</span> <span class="kn">import</span> <span class="n">Material</span> <span class="k">as</span> <span class="n">pymat</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
+<span class="kn">from</span> <span class="nn">openmc</span> <span class="kn">import</span> <span class="n">Material</span>
+
+<div class="viewcode-block" id="Materialflow"><a class="viewcode-back" href="../../api/generated/saltproc.Materialflow.html#saltproc.Materialflow">[docs]</a><span class="k">class</span> <span class="nc">Materialflow</span><span class="p">(</span><span class="n">Material</span><span class="p">):</span>
+    <span class="sd">&quot;&quot;&quot; Class contains information about burnable material flow. Child class of</span>
+<span class="sd">    :class:`openmc.Material`.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    comp : dict of str to float</span>
+<span class="sd">        Dictionary mapping element or nuclide names to their weight</span>
+<span class="sd">        percent.</span>
+<span class="sd">    density : float</span>
+<span class="sd">        Material density [g/cm^3]</span>
+<span class="sd">    volume : float</span>
+<span class="sd">        Material volume [cm^3]</span>
+<span class="sd">    mass_flowrate : float</span>
+<span class="sd">        mass flow rate of the material flow [g/s]</span>
+<span class="sd">    void_frac : float</span>
+<span class="sd">        void fraction in the material [%]</span>
+<span class="sd">    burnup : float</span>
+<span class="sd">        material burnup at the end of depletion step [MWd/kgU]</span>
+<span class="sd">    kwargs : dict</span>
+<span class="sd">        Key-word arguemnts for :class:`openmc.Material`</span>
 
-
-<div class="viewcode-block" id="Materialflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">[docs]</a><span class="k">class</span> <span class="nc">Materialflow</span><span class="p">(</span><span class="n">pymat</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Class contains information about burnable material flow. Based on</span>
-<span class="sd">    :class:`pyne.Material`.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
-<div class="viewcode-block" id="Materialflow.__init__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
             <span class="bp">self</span><span class="p">,</span>
             <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">mass</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">density</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">atoms_per_molecule</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">metadata</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">vol</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">temp</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span>
+            <span class="n">comp_is_density</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+            <span class="n">density</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+            <span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
             <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
             <span class="n">void_frac</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-            <span class="n">burnup</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
+            <span class="n">burnup</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
+            <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Initializes the Materialflow object.</span>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-
-<span class="sd">        :class:`pyne.Material`</span>
-<span class="sd">            PyNE Material parent class containing nuclide vector, density,</span>
-<span class="sd">            mass, atoms_per_molecule, metadata</span>
-<span class="sd">        temp : float</span>
-<span class="sd">            temperature of the material flow (K)</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        void_frac : float</span>
-<span class="sd">            void fraction in the material (%)</span>
-<span class="sd">        burnup : float</span>
-<span class="sd">            material burnup at the end of depletion step [MWd/kgU]</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># initialize parent class attributes</span>
-        <span class="c1"># super().__init__()</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+
         <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">vol</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">temp</span>
+        <span class="k">if</span> <span class="n">volume</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">volume</span>
+        <span class="k">if</span> <span class="n">density</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">set_density</span><span class="p">(</span><span class="s1">&#39;g/cm3&#39;</span><span class="p">,</span> <span class="n">density</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="n">void_frac</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">burnup</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">burnup</span>
 
-<div class="viewcode-block" id="Materialflow.get_mass"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">[docs]</a>    <span class="k">def</span> <span class="nf">get_mass</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns total mass of the material descibed in Materialflow object.</span>
+        <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">comp</span><span class="p">):</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">replace_components</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="n">comp_is_density</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="mf">0.0</span>
 
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        float</span>
-<span class="sd">            The mass of the object.</span>
+<div class="viewcode-block" id="Materialflow.replace_components"><a class="viewcode-back" href="../../api/generated/saltproc.Materialflow.html#saltproc.Materialflow.replace_components">[docs]</a>    <span class="k">def</span> <span class="nf">replace_components</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">comp</span><span class="p">,</span> <span class="n">comp_is_density</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Replace and normalize the material composition</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        comp : dict of str to float</span>
+<span class="sd">            Dictionary mapping element or nuclide names to their atom or weight</span>
+<span class="sd">            percent.</span>
+<span class="sd">        percent_type : {&#39;wo&#39;, &#39;ao&#39;}</span>
+<span class="sd">            &#39;ao&#39; for atom percenta nd &#39;wo&#39; for weight percent.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span></div>
+        <span class="k">for</span> <span class="n">nuclide</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_nuclides</span><span class="p">():</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">remove_nuclide</span><span class="p">(</span><span class="n">nuclide</span><span class="p">)</span>
+
+        <span class="n">nucs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
+        <span class="n">nonzeros</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">comp</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">nucs</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nucs</span><span class="p">,</span> <span class="n">nonzeros</span><span class="p">))</span>
+            <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">add_components</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="n">percent_type</span><span class="o">=</span><span class="s1">&#39;wo&#39;</span><span class="p">)</span>
+            <span class="n">density</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_density</span><span class="p">()</span>
+            <span class="c1"># mass dens to wt-%</span>
+            <span class="k">if</span> <span class="n">comp_is_density</span><span class="p">:</span>
+                <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">nucs</span><span class="p">:</span>
+                    <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">remove_nuclide</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span>
+                    <span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> <span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">/</span> <span class="n">density</span>
+                    <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">add_nuclide</span><span class="p">(</span><span class="n">nuc</span><span class="p">,</span> <span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">],</span> <span class="n">percent_type</span><span class="o">=</span><span class="s1">&#39;wo&#39;</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">set_density</span><span class="p">(</span><span class="s1">&#39;g/cm3&#39;</span><span class="p">,</span> <span class="n">density</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">density</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">volume</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="n">comp</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="n">comp</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="mf">0.0</span></div>
+
+<div class="viewcode-block" id="Materialflow.get_mass"><a class="viewcode-back" href="../../api/generated/saltproc.Materialflow.html#saltproc.Materialflow.get_mass">[docs]</a>    <span class="k">def</span> <span class="nf">get_mass</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">openmc</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">openmc</span><span class="p">:</span>
+            <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">nuc</span><span class="p">):</span>
+                <span class="n">mass</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span>
+            <span class="k">else</span><span class="p">:</span>
+                <span class="n">mass</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">mass</span> <span class="o">=</span> <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">get_mass</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">mass</span></div>
+
+    <span class="k">def</span> <span class="nf">get_density</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">density_units</span> <span class="o">!=</span> <span class="s1">&#39;g/cm3&#39;</span><span class="p">:</span>
+            <span class="n">density</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_mass_density</span><span class="p">()</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">density</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span>
+        <span class="k">return</span> <span class="n">density</span>
 
-<div class="viewcode-block" id="Materialflow.print_attr"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">[docs]</a>    <span class="k">def</span> <span class="nf">print_attr</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Materialflow.print_attr"><a class="viewcode-back" href="../../api/generated/saltproc.Materialflow.html#saltproc.Materialflow.print_attr">[docs]</a>    <span class="k">def</span> <span class="nf">print_attr</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Prints various attributes of Materialflow object.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Volume </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Volume </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">volume</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Density </span><span class="si">%f</span><span class="s2"> g/cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Atoms per molecule </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Meta </span><span class="si">%s</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass flowrate </span><span class="si">%f</span><span class="s2"> g/s&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Temperature </span><span class="si">%f</span><span class="s2"> K&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Void fraction </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span><span class="p">)</span>
         <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Burnup </span><span class="si">%f</span><span class="s2"> MWd/kgU&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Materialflow.scale_matflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">[docs]</a>    <span class="k">def</span> <span class="nf">scale_matflow</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">f</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
+<div class="viewcode-block" id="Materialflow.scale_matflow"><a class="viewcode-back" href="../../api/generated/saltproc.Materialflow.html#saltproc.Materialflow.scale_matflow">[docs]</a>    <span class="k">def</span> <span class="nf">scale_matflow</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">f</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Returns nuclide vector dictionary, obtained from object attrs and</span>
 <span class="sd">        then scaled by factor.</span>
 
@@ -161,39 +213,21 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
 <span class="sd">        Returns</span>
 <span class="sd">        -------</span>
 <span class="sd">        new_mat_comp : dict of int to float</span>
-<span class="sd">            Materialflow nuclide component dictionary of relative mass.</span>
+<span class="sd">            Nuclide component dictionary of relative mass.</span>
 
 <span class="sd">            ``key``</span>
 <span class="sd">                The keys are preserved from PyNE Material (integers</span>
 <span class="sd">                representing nuclides in id-form).</span>
 <span class="sd">            ``value``</span>
-<span class="sd">                Each nuclide&#39;s mass fraction, multiplied by</span>
 <span class="sd">                factor f.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">old_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="p">)</span>
         <span class="n">new_mat_comp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">old_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="n">new_mat_comp</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">*</span> <span class="n">value</span>
         <span class="k">return</span> <span class="n">new_mat_comp</span></div>
 
-<div class="viewcode-block" id="Materialflow.copy_pymat_attrs"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">[docs]</a>    <span class="k">def</span> <span class="nf">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">src</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Copies PyNE attributites from source object (`src`) to target</span>
-<span class="sd">        object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        src : obj</span>
-<span class="sd">            Materialflow object to copy attributes from.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">density</span><span class="p">))</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                <span class="s1">&#39;atoms_per_molecule&#39;</span><span class="p">,</span>
-                <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span> <span class="o">=</span> <span class="n">src</span><span class="o">.</span><span class="n">metadata</span></div>
-
-<div class="viewcode-block" id="Materialflow.__deepcopy__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">[docs]</a>    <span class="k">def</span> <span class="nf">__deepcopy__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">memo</span><span class="p">):</span>
+    <span class="k">def</span> <span class="nf">__deepcopy__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">memo</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Return a deep copy of compound object `self`.</span>
 
 <span class="sd">        Parameters</span>
@@ -209,24 +243,19 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
 <span class="sd">            New compound object copied from `self`.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Initiate new object my copying class from self</span>
         <span class="bp">cls</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="c1"># Copy nuclide vector from self</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">scale_matflow</span><span class="p">())</span>
-        <span class="c1"># Copy Materialflow density and atoms_per_molecule</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-        <span class="c1"># Copy other object attributes such as volume, burnup, etc</span>
-        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="k">if</span> <span class="s1">&#39;comp&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">k</span><span class="p">:</span>
-                <span class="nb">setattr</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">v</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__eq__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">[docs]</a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="p">(</span><span class="n">comp</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">copy</span><span class="p">(),</span>
+                     <span class="n">density</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">volume</span><span class="p">,</span>
+                     <span class="n">volume</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">volume</span><span class="p">,</span>
+                     <span class="n">mass_flowrate</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">,</span>
+                     <span class="n">void_frac</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span><span class="p">,</span>
+                     <span class="n">burnup</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">burnup</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">result</span>
+
+    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Overrides Python ``=`` operation to compare two Materialflow</span>
-<span class="sd">        objects. Compares objects total mass, density, atoms_per_molecule,</span>
-<span class="sd">        temperature, mass flowrate, and masses of important isotopes:</span>
-<span class="sd">        uranium-235 and uranium-238.</span>
+<span class="sd">        objects. Compares objects total mass, volume,</span>
+<span class="sd">        and mass flowrate.</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -242,18 +271,19 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Materialflow</span><span class="p">):</span>
             <span class="c1"># don&#39;t attempt to compare against unrelated types</span>
             <span class="k">return</span> <span class="bp">NotImplemented</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">vol</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">density</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">atoms_per_molecule</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">temp</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass_flowrate</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span></div>
+
+        <span class="n">value</span> <span class="o">=</span> <span class="n">math</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
+                             <span class="n">other</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
+                             <span class="n">abs_tol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">)</span> \
+            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">volume</span> \
+            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass_flowrate</span>
+
+        <span class="k">return</span> <span class="n">value</span>
+
     <span class="c1">#</span>
     <span class="c1"># Materialflow math operation Overloads</span>
     <span class="c1">#</span>
-
-<div class="viewcode-block" id="Materialflow.__add__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">[docs]</a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Overrides Python adding operation for Materialflow objects.</span>
 
 <span class="sd">        Parameters</span>
@@ -269,27 +299,47 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
 <span class="sd">            Materialflow which is a sum of isotope masses from `x` and `y`.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">cls</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span>
-        <span class="n">x_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-        <span class="n">y_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
-        <span class="n">x_comp</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">y_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">x_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass  # averaged</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">temp</span>
-        <span class="c1"># Burnup is simply averaged by should be renormilized by heavy metal</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span>
-        <span class="c1"># result.density = result.mass/result.vol</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="p">(</span>
-            <span class="n">x</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">vol</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__rmul__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">[docs]</a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scaling_factor</span><span class="p">):</span>
+        <span class="k">if</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">or</span> <span class="n">x</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">)</span> \
+                <span class="ow">and</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">mass</span> <span class="o">!=</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="n">y</span><span class="o">.</span><span class="n">volume</span> <span class="o">!=</span> <span class="mf">0.0</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">y</span>
+        <span class="k">elif</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">!=</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="n">x</span><span class="o">.</span><span class="n">volume</span> <span class="o">!=</span> <span class="mf">0.0</span><span class="p">)</span> \
+                <span class="ow">and</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">):</span>
+            <span class="k">return</span> <span class="n">x</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="bp">cls</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="vm">__class__</span>
+            <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
+
+            <span class="n">result_mass</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span>
+
+            <span class="n">x_density</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="n">x</span><span class="o">.</span><span class="n">volume</span>
+            <span class="n">y_density</span> <span class="o">=</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">volume</span>
+
+            <span class="n">result_density</span> <span class="o">=</span> <span class="n">x_density</span>
+
+            <span class="n">result_volume</span> <span class="o">=</span> <span class="n">result_mass</span> <span class="o">/</span> <span class="n">result_density</span>
+            <span class="n">result</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">density</span><span class="o">=</span><span class="n">result_density</span><span class="p">,</span> <span class="n">volume</span><span class="o">=</span><span class="n">result_volume</span><span class="p">)</span>
+
+            <span class="k">def</span> <span class="nf">get_mass_dict</span><span class="p">(</span><span class="n">matflow</span><span class="p">):</span>
+                <span class="n">nuclides</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">matflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+                <span class="n">masses</span> <span class="o">=</span> <span class="n">matflow</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">matflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
+                <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nuclides</span><span class="p">,</span> <span class="n">masses</span><span class="p">))</span>
+
+            <span class="n">x_mass_dict</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">get_mass_dict</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
+            <span class="n">y_mass_dict</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">get_mass_dict</span><span class="p">(</span><span class="n">y</span><span class="p">))</span>
+            <span class="n">x_mass_dict</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">y_mass_dict</span><span class="p">)</span>
+            <span class="n">x_mass_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">x_mass_dict</span><span class="p">)</span>
+            <span class="n">masses</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">x_mass_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span> <span class="o">/</span> <span class="n">result_mass</span>
+            <span class="n">result_comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">x_mass_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">(),</span> <span class="n">masses</span><span class="p">))</span>
+            <span class="n">result</span><span class="o">.</span><span class="n">replace_components</span><span class="p">(</span><span class="n">result_comp</span><span class="p">)</span>
+            <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass_flowrate</span>
+            <span class="c1"># Burnup is simply averaged by should be renormalized by heavy metal</span>
+            <span class="c1"># use self.fissionable_mass?</span>
+            <span class="n">result</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span> <span class="o">/</span> <span class="n">result_mass</span>
+            <span class="n">result</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="p">(</span>
+                <span class="n">x</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">volume</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">volume</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">volume</span>
+        <span class="k">return</span> <span class="n">result</span>
+
+    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scaling_factor</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Overrides Python multiplication operation for Materialflow objects.</span>
 
 <span class="sd">        Parameters</span>
@@ -306,14 +356,13 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">scaling_factor</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
             <span class="n">result</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span>
-            <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass</span>
+            <span class="k">if</span> <span class="n">scaling_factor</span> <span class="o">!=</span> <span class="mf">1.0</span> <span class="ow">or</span> <span class="n">scaling_factor</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+                <span class="n">result</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">volume</span>
+                <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">volume</span> <span class="o">*</span> <span class="n">result</span><span class="o">.</span><span class="n">get_density</span><span class="p">()</span>
+                <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span>
             <span class="k">return</span> <span class="n">result</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="bp">NotImplemented</span></div></div>
+            <span class="bp">NotImplemented</span></div>
 </pre></div>
 
            </div>
@@ -344,11 +393,6 @@ <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="materialflow.html">master</a></dd>
diff --git a/master/_modules/saltproc/openmc_depcode.html b/master/_modules/saltproc/openmc_depcode.html
index 9c66db75c..d29dc3925 100644
--- a/master/_modules/saltproc/openmc_depcode.html
+++ b/master/_modules/saltproc/openmc_depcode.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -77,22 +79,53 @@
   <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span></span><span class="kn">import</span> <span class="nn">subprocess</span>
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">json</span>
 <span class="kn">from</span> <span class="nn">pathlib</span> <span class="kn">import</span> <span class="n">Path</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">serpent</span>
+<span class="kn">from</span> <span class="nn">uncertainties</span> <span class="kn">import</span> <span class="n">unumpy</span>
 <span class="kn">import</span> <span class="nn">openmc</span>
 
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">saltproc.abc</span> <span class="kn">import</span> <span class="n">Depcode</span>
+<span class="kn">from</span> <span class="nn">saltproc.depcode</span> <span class="kn">import</span> <span class="n">Depcode</span>
+<span class="kn">from</span> <span class="nn">openmc.deplete.abc</span> <span class="kn">import</span> <span class="n">_SECONDS_PER_DAY</span>
+<span class="kn">from</span> <span class="nn">openmc.deplete</span> <span class="kn">import</span> <span class="n">Results</span><span class="p">,</span> <span class="n">Chain</span>
+<span class="kn">from</span> <span class="nn">openmc.mgxs</span> <span class="kn">import</span> <span class="n">Beta</span><span class="p">,</span> <span class="n">DecayRate</span><span class="p">,</span> <span class="n">EnergyGroups</span>
+<span class="kn">from</span> <span class="nn">openmc.data</span> <span class="kn">import</span> <span class="n">atomic_mass</span><span class="p">,</span> <span class="n">DataLibrary</span><span class="p">,</span> <span class="n">JOULE_PER_EV</span>
 
-<div class="viewcode-block" id="OpenMCDepcode"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode">[docs]</a><span class="k">class</span> <span class="nc">OpenMCDepcode</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
+
+<span class="n">_FISSILE_NUCLIDES</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;U233&#39;</span><span class="p">,</span> <span class="s1">&#39;U235&#39;</span><span class="p">,</span> <span class="s1">&#39;Pu239&#39;</span><span class="p">,</span> <span class="s1">&#39;Pu241&#39;</span><span class="p">]</span>
+<span class="n">_FERTILE_NUCLIDES</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;Th232&#39;</span><span class="p">,</span> <span class="s1">&#39;U234&#39;</span><span class="p">,</span> <span class="s1">&#39;U238&#39;</span><span class="p">,</span> <span class="s1">&#39;Pu238&#39;</span><span class="p">,</span> <span class="s1">&#39;Pu240&#39;</span><span class="p">]</span>
+<span class="n">_KG_PER_G</span> <span class="o">=</span> <span class="mf">1e-3</span>
+<span class="n">_MW_PER_W</span> <span class="o">=</span> <span class="mf">1e-6</span>
+<span class="n">_DELAYED_ENERGY_BOUNDS</span> <span class="o">=</span> <span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="mf">20e7</span><span class="p">)</span> <span class="c1"># eV</span>
+<span class="n">_N_DELAYED_GROUPS</span> <span class="o">=</span> <span class="mi">6</span>
+
+<div class="viewcode-block" id="OpenMCDepcode"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode">[docs]</a><span class="k">class</span> <span class="nc">OpenMCDepcode</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Interface for running depletion steps in OpenMC, as well as obtaining</span>
 <span class="sd">    depletion step results.</span>
 
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    output_path : str</span>
+<span class="sd">        Path to results storage directory.</span>
+<span class="sd">    exec_path : str</span>
+<span class="sd">        Path to OpenMC depletion script.</span>
+<span class="sd">    template_input_file_path : dict of str to str</span>
+<span class="sd">        Path to user input files (``.xml`` file for geometry,</span>
+<span class="sd">        material, and settings) for OpenMC. File type as strings</span>
+<span class="sd">        are keys (e.g. &#39;geometry&#39;, &#39;settings&#39;, &#39;material&#39;), and</span>
+<span class="sd">        file path as strings are values.</span>
+<span class="sd">    geo_file_paths : str or list, optional</span>
+<span class="sd">        Path to file that contains the reactor geometry.</span>
+<span class="sd">        List of `str` if reactivity control by</span>
+<span class="sd">        switching geometry is `On` or just `str` otherwise.</span>
+<span class="sd">     depletion_settings : dict</span>
+<span class="sd">         Keyword arguments to pass to :func:`openmc.model.deplete()`.</span>
+<span class="sd">     chain_file_path : str</span>
+<span class="sd">         Path to depletion chain file</span>
+
 <span class="sd">    Attributes</span>
 <span class="sd">    ----------</span>
 <span class="sd">    neutronics_parameters : dict of str to type</span>
@@ -101,6 +134,9 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">    step_metadata : dict of str to type</span>
 <span class="sd">        Holds OpenMC depletion step metadata. Metadata labels are keys</span>
 <span class="sd">        and metadata values are values.</span>
+<span class="sd">    depcode_metadata : dict of str to type</span>
+<span class="sd">        Holds OpenMC simulation metadata. Metadata labels are keys</span>
+<span class="sd">        and metadata values are values.</span>
 <span class="sd">    runtime_inputfile : dict of str to str</span>
 <span class="sd">        Paths to OpenMC input files used to run depletion step. Contains neutron</span>
 <span class="sd">        settings and geometry.</span>
@@ -116,7 +152,7 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 
 <span class="sd">    &quot;&quot;&quot;</span>
 
-<div class="viewcode-block" id="OpenMCDepcode.__init__"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
                  <span class="n">output_path</span><span class="p">,</span>
                  <span class="n">exec_path</span><span class="p">,</span>
                  <span class="n">template_input_file_path</span><span class="p">,</span>
@@ -126,26 +162,6 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
                  <span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Initialize a OpenMCDepcode object.</span>
 
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           output_path : str</span>
-<span class="sd">               Path to results storage directory.</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to OpenMC depletion script.</span>
-<span class="sd">           template_input_file_path : dict of str to str</span>
-<span class="sd">               Path to user input files (``.xml`` file for geometry,</span>
-<span class="sd">               material, and settings) for OpenMC. File type as strings</span>
-<span class="sd">               are keys (e.g. &#39;geometry&#39;, &#39;settings&#39;, &#39;material&#39;), and</span>
-<span class="sd">               file path as strings are values.</span>
-<span class="sd">           geo_file_paths : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">            depletion_settings : dict</span>
-<span class="sd">                Keyword arguments to pass to :func:`openmc.model.deplete()`.</span>
-<span class="sd">            chain_file_path : str</span>
-<span class="sd">                Path to depletion chain file</span>
-
 <span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="c1"># if using the default depletion file, make sure we have the right path</span>
@@ -165,20 +181,159 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">=</span> \
             <span class="p">{</span><span class="s1">&#39;geometry&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;geometry.xml&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">()),</span>
              <span class="s1">&#39;settings&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;settings.xml&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;materials.xml&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;materials.xml&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">_check_for_material_names</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">[</span><span class="s1">&#39;materials&#39;</span><span class="p">])</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;depletion_results.h5&#39;</span><span class="p">,</span> <span class="s1">&#39;openmc_simulation_n0.h5&#39;</span><span class="p">,</span>
+                                 <span class="s1">&#39;openmc_simulation_n1.h5&#39;</span><span class="p">,</span> <span class="s1">&#39;summary.h5&#39;</span><span class="p">,</span>
+                                 <span class="s1">&#39;tallies.out&#39;</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;materials.xml&#39;</span><span class="p">,</span> <span class="s1">&#39;geometry.xml&#39;</span><span class="p">,</span> <span class="s1">&#39;tallies.xml&#39;</span><span class="p">)</span>
+
+    <span class="k">def</span> <span class="nf">_check_for_material_names</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Checks that all materials in the material file</span>
+<span class="sd">        have a name.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        filename : str</span>
+<span class="sd">           Path to a materials.xml file</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
+        <span class="n">materials</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
 
-<div class="viewcode-block" id="OpenMCDepcode.read_step_metadata"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_step_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">material_id_to_name</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">for</span> <span class="n">material</span> <span class="ow">in</span> <span class="n">materials</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">material</span><span class="o">.</span><span class="n">name</span> <span class="o">==</span> <span class="s1">&#39;&#39;</span><span class="p">:</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Material </span><span class="si">{</span><span class="n">material</span><span class="o">.</span><span class="n">id</span><span class="si">}</span><span class="s2"> has no name.&quot;</span><span class="p">)</span>
+
+<div class="viewcode-block" id="OpenMCDepcode.read_depcode_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_depcode_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads OpenMC&#39;s depletion step metadata and stores it in the</span>
 <span class="sd">        :class:`OpenMCDepcode` object&#39;s :attr:`step_metadata` attribute.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">sp0</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n0.h5&#39;</span><span class="p">)</span>
+
+        <span class="n">depcode_name</span><span class="p">,</span> <span class="n">depcode_ver</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">,</span> <span class="s2">&quot;.&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span><span class="n">sp0</span><span class="o">.</span><span class="n">version</span><span class="p">)))</span>
+        <span class="n">sp0</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_ver</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_find_xs_path</span><span class="p">()</span></div>
 
-<div class="viewcode-block" id="OpenMCDepcode.read_neutronics_parameters"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_neutronics_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+    <span class="k">def</span> <span class="nf">_find_xs_path</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">xs_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;OPENMC_CROSS_SECTIONS&#39;</span><span class="p">]</span>
+        <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
+            <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
+            <span class="n">xs_path</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span><span class="o">.</span><span class="n">cross_sections</span>
+        <span class="k">return</span> <span class="n">xs_path</span>
+
+<div class="viewcode-block" id="OpenMCDepcode.read_step_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_step_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads OpenMC&#39;s depletion step metadata and stores it in the</span>
+<span class="sd">        :class:`OpenMCDepcode` object&#39;s :attr:`step_metadata` attribute.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">sp0</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n0.h5&#39;</span><span class="p">)</span>
+        <span class="n">sp1</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n1.h5&#39;</span><span class="p">)</span>
+        <span class="n">res</span> <span class="o">=</span> <span class="n">Results</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;depletion_results.h5&#39;</span><span class="p">)</span>
+
+        <span class="n">execution_time</span> <span class="o">=</span> <span class="n">sp0</span><span class="o">.</span><span class="n">runtime</span><span class="p">[</span><span class="s1">&#39;simulation&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="n">sp1</span><span class="o">.</span><span class="n">runtime</span><span class="p">[</span><span class="s1">&#39;simulation&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="n">res</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">proc_time</span> <span class="o">+</span> <span class="n">res</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">proc_time</span>
+        <span class="n">sp0</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+        <span class="n">sp1</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depletion_timestep_size&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">time</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">execution_time</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span></div>
+
+<div class="viewcode-block" id="OpenMCDepcode.read_neutronics_parameters"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_neutronics_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads OpenMC depletion step neutronics parameters and stores them</span>
 <span class="sd">        in :class:`OpenMCDepcode` object&#39;s :attr:`neutronics_parameters`</span>
 <span class="sd">        attribute.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="OpenMCDepcode.read_depleted_materials"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_depleted_materials">[docs]</a>    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">sp0</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n0.h5&#39;</span><span class="p">)</span>
+        <span class="n">sp1</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n1.h5&#39;</span><span class="p">)</span>
+        <span class="n">res</span> <span class="o">=</span> <span class="n">Results</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;depletion_results.h5&#39;</span><span class="p">)</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">k</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">k</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_breeding_ratio</span><span class="p">(</span><span class="n">sp0</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_breeding_ratio</span><span class="p">(</span><span class="n">sp1</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">time</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">_SECONDS_PER_DAY</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">source_rate</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_delayed_quantity</span><span class="p">(</span><span class="n">sp0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_beta</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_delayed_quantity</span><span class="p">(</span><span class="n">sp1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_beta</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_bds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_delayed_quantity</span><span class="p">(</span><span class="n">sp0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_delayed_lambda</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_delayed_quantity</span><span class="p">(</span><span class="n">sp1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_delayed_lambda</span><span class="p">)</span>
+        <span class="n">init_fission_mass</span><span class="p">,</span> <span class="n">final_fission_mass</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calculate_fission_masses</span><span class="p">(</span><span class="n">res</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">init_fission_mass</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">final_fission_mass</span>
+        <span class="k">del</span> <span class="n">sp0</span><span class="p">,</span> <span class="n">sp1</span></div>
+
+    <span class="k">def</span> <span class="nf">_calculate_breeding_ratio</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sp</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Fissile material produces / fissile material destroyed&quot;&quot;&quot;</span>
+
+        <span class="n">breeding_ratio_tally</span> <span class="o">=</span> <span class="n">sp</span><span class="o">.</span><span class="n">get_tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;breeding_ratio_tally&#39;</span><span class="p">)</span>
+        <span class="n">frame</span> <span class="o">=</span> <span class="n">breeding_ratio_tally</span><span class="o">.</span><span class="n">get_pandas_dataframe</span><span class="p">()</span><span class="o">.</span><span class="n">set_index</span><span class="p">(</span><span class="s1">&#39;score&#39;</span><span class="p">)</span>
+        <span class="n">n_gamma_frame</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="s1">&#39;(n,gamma)&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">set_index</span><span class="p">(</span><span class="s1">&#39;nuclide&#39;</span><span class="p">)</span>
+        <span class="n">absorption_frame</span> <span class="o">=</span> <span class="n">frame</span><span class="o">.</span><span class="n">loc</span><span class="p">[</span><span class="s1">&#39;absorption&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">set_index</span><span class="p">(</span><span class="s1">&#39;nuclide&#39;</span><span class="p">)</span>
+
+        <span class="n">n_gamma_vals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_values_with_uncertainties</span><span class="p">(</span><span class="n">n_gamma_frame</span><span class="p">)</span>
+        <span class="n">absorption_vals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_values_with_uncertainties</span><span class="p">(</span><span class="n">absorption_frame</span><span class="p">)</span>
+
+        <span class="n">n_gamma_series</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">n_gamma_frame</span><span class="o">.</span><span class="n">index</span><span class="p">,</span> <span class="n">n_gamma_vals</span><span class="p">))</span>
+        <span class="n">absorption_series</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">absorption_frame</span><span class="o">.</span><span class="n">index</span><span class="p">,</span> <span class="n">absorption_vals</span><span class="p">))</span>
+
+        <span class="n">fissionable_production_rate</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="n">n_gamma_series</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fertile_nucs</span><span class="p">])</span>
+        <span class="n">fissionable_destruction_rate</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="n">absorption_series</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fissile_nucs</span><span class="p">])</span>
+
+        <span class="n">breeding_ratio</span> <span class="o">=</span> <span class="n">fissionable_production_rate</span> <span class="o">/</span> <span class="n">fissionable_destruction_rate</span>
+
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">breeding_ratio</span><span class="o">.</span><span class="n">n</span><span class="p">,</span> <span class="n">breeding_ratio</span><span class="o">.</span><span class="n">s</span><span class="p">])</span>
+
+    <span class="k">def</span> <span class="nf">_calculate_delayed_quantity</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sp</span><span class="p">,</span> <span class="n">mgxs</span><span class="p">):</span>
+        <span class="c1"># group-wise delayed quantity</span>
+        <span class="n">mgxs</span><span class="o">.</span><span class="n">load_from_statepoint</span><span class="p">(</span><span class="n">sp</span><span class="p">)</span>
+        <span class="n">frame</span> <span class="o">=</span> <span class="n">mgxs</span><span class="o">.</span><span class="n">get_pandas_dataframe</span><span class="p">()</span>
+        <span class="n">vals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_values_with_uncertainties</span><span class="p">(</span><span class="n">frame</span><span class="p">)</span>
+        <span class="n">tot</span> <span class="o">=</span> <span class="n">vals</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span>
+        <span class="n">vals</span> <span class="o">=</span> <span class="p">[[</span><span class="n">v</span><span class="o">.</span><span class="n">n</span><span class="p">,</span> <span class="n">v</span><span class="o">.</span><span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">vals</span><span class="p">]</span>
+        <span class="n">tot</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">tot</span><span class="o">.</span><span class="n">n</span><span class="p">,</span> <span class="n">tot</span><span class="o">.</span><span class="n">s</span><span class="p">]])</span>
+
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">tot</span><span class="p">,</span> <span class="n">vals</span><span class="p">])</span>
+
+    <span class="k">def</span> <span class="nf">_get_values_with_uncertainties</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">frame</span><span class="p">):</span>
+        <span class="n">vals</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">frame</span><span class="p">[</span><span class="s1">&#39;mean&#39;</span><span class="p">],</span> <span class="n">frame</span><span class="p">[</span><span class="s1">&#39;std. dev.&#39;</span><span class="p">])))</span>
+        <span class="k">return</span> <span class="n">unumpy</span><span class="o">.</span><span class="n">uarray</span><span class="p">(</span><span class="n">frame</span><span class="p">[</span><span class="s1">&#39;mean&#39;</span><span class="p">],</span> <span class="n">frame</span><span class="p">[</span><span class="s1">&#39;std. dev.&#39;</span><span class="p">])</span>
+
+    <span class="k">def</span> <span class="nf">_calculate_fission_masses</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">res</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Calculate the fission mass [kg] before and after material depletion&quot;&quot;&quot;</span>
+        <span class="n">init_fission_mass</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="n">final_fission_mass</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="n">init_mats</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">export_to_materials</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+        <span class="n">final_mats</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">export_to_materials</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+        <span class="k">for</span> <span class="n">init_mat</span><span class="p">,</span> <span class="n">final_mat</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">init_mats</span><span class="p">,</span> <span class="n">final_mats</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">init_mat</span><span class="o">.</span><span class="n">depletable</span><span class="p">:</span>
+                <span class="n">init_fission_mass</span> <span class="o">+=</span> <span class="n">init_mat</span><span class="o">.</span><span class="n">fissionable_mass</span>
+            <span class="k">if</span> <span class="n">final_mat</span><span class="o">.</span><span class="n">depletable</span><span class="p">:</span>
+                <span class="n">final_fission_mass</span> <span class="o">+=</span> <span class="n">final_mat</span><span class="o">.</span><span class="n">fissionable_mass</span>
+
+        <span class="c1"># Convert g to kg</span>
+        <span class="n">init_fission_mass</span> <span class="o">*=</span> <span class="n">_KG_PER_G</span>
+        <span class="n">final_fission_mass</span> <span class="o">*=</span> <span class="n">_KG_PER_G</span>
+
+        <span class="k">del</span> <span class="n">init_mat</span><span class="p">,</span> <span class="n">final_mat</span><span class="p">,</span> <span class="n">init_mats</span><span class="p">,</span> <span class="n">final_mats</span>
+        <span class="k">return</span> <span class="n">init_fission_mass</span><span class="p">,</span> <span class="n">final_fission_mass</span>
+
+<div class="viewcode-block" id="OpenMCDepcode.read_depleted_materials"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_depleted_materials">[docs]</a>    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads depleted materials from OpenMC&#39;s `depletion_results.h5` file</span>
 <span class="sd">        and returns a dictionary with a :class:`Materialflow` object for each</span>
 <span class="sd">        depleted material.</span>
@@ -200,9 +355,103 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">            ``value``</span>
 <span class="sd">                :class:`Materialflow` object holding composition and properties.</span>
 
-<span class="sd">        &quot;&quot;&quot;</span></div>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># Determine moment in depletion step to read data from</span>
+        <span class="k">if</span> <span class="n">read_at_end</span><span class="p">:</span>
+            <span class="n">moment</span> <span class="o">=</span> <span class="mi">1</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">moment</span> <span class="o">=</span> <span class="mi">0</span>
+
+        <span class="n">results_file</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;depletion_results.h5&#39;</span><span class="p">)</span>
+        <span class="n">depleted_materials</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="n">results</span> <span class="o">=</span> <span class="n">Results</span><span class="p">(</span><span class="n">results_file</span><span class="p">)</span>
+
+        <span class="c1"># Get decay and transport nuclides</span>
+        <span class="n">nucs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">results</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index_nuc</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+        <span class="n">depleted_openmc_materials</span> <span class="o">=</span> <span class="n">results</span><span class="o">.</span><span class="n">export_to_materials</span><span class="p">(</span><span class="n">moment</span><span class="p">,</span> <span class="n">nuc_with_data</span><span class="o">=</span><span class="n">nucs</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">read_at_end</span><span class="p">:</span>
+            <span class="n">_nucs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">results</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">index_nuc</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+            <span class="n">starting_openmc_materials</span> <span class="o">=</span> <span class="n">results</span><span class="o">.</span><span class="n">export_to_materials</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">nuc_with_data</span><span class="o">=</span><span class="n">_nucs</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># placeholder for starting materials</span>
+            <span class="n">starting_openmc_materials</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">depleted_openmc_materials</span><span class="p">))</span>
+
+        <span class="n">openmc_materials</span> <span class="o">=</span> <span class="nb">zip</span><span class="p">(</span><span class="n">starting_openmc_materials</span><span class="p">,</span> <span class="n">depleted_openmc_materials</span><span class="p">)</span>
+
+        <span class="n">depleted_materials</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="k">for</span> <span class="n">starting_material</span><span class="p">,</span> <span class="n">depleted_material</span> <span class="ow">in</span> <span class="n">openmc_materials</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">depleted_material</span><span class="o">.</span><span class="n">depletable</span><span class="p">:</span>
+                <span class="n">volume</span> <span class="o">=</span> <span class="n">depleted_material</span><span class="o">.</span><span class="n">volume</span>
+                <span class="n">density</span> <span class="o">=</span> <span class="n">depleted_material</span><span class="o">.</span><span class="n">get_mass_density</span><span class="p">()</span>
+                <span class="n">comp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_create_mass_percents_dictionary</span><span class="p">(</span><span class="n">depleted_material</span><span class="p">)</span>
+                <span class="n">name</span> <span class="o">=</span> <span class="n">depleted_material</span><span class="o">.</span><span class="n">name</span>
+                <span class="k">if</span> <span class="n">read_at_end</span><span class="p">:</span>
+                    <span class="n">sp0</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">StatePoint</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;openmc_simulation_n0.h5&#39;</span><span class="p">)</span>
+                    <span class="n">heavy_metal_mass</span> <span class="o">=</span> <span class="n">starting_material</span><span class="o">.</span><span class="n">fissionable_mass</span> <span class="o">*</span> <span class="n">_KG_PER_G</span>
+                    <span class="n">power</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">source_rate</span> <span class="o">*</span> <span class="n">_MW_PER_W</span>
+                    <span class="n">days</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">time</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="n">_SECONDS_PER_DAY</span>
+                    <span class="n">burnup</span> <span class="o">=</span> <span class="n">power</span> <span class="o">*</span> <span class="n">days</span> <span class="o">/</span> <span class="n">heavy_metal_mass</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">burnup</span> <span class="o">=</span> <span class="mi">0</span>
+                <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">comp</span><span class="o">=</span><span class="n">comp</span><span class="p">,</span>
+                                                        <span class="n">density</span><span class="o">=</span><span class="n">density</span><span class="p">,</span>
+                                                        <span class="n">volume</span><span class="o">=</span><span class="n">volume</span><span class="p">,</span>
+                                                        <span class="n">burnup</span><span class="o">=</span><span class="n">burnup</span><span class="p">)</span>
+        <span class="k">del</span> <span class="n">openmc_materials</span><span class="p">,</span> <span class="n">depleted_openmc_materials</span><span class="p">,</span> <span class="n">starting_openmc_materials</span>
+        <span class="k">return</span> <span class="n">depleted_materials</span></div>
+
+    <span class="k">def</span> <span class="nf">_create_mass_percents_dictionary</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mat</span><span class="p">,</span> <span class="n">percent_type</span><span class="o">=</span><span class="s1">&#39;ao&#39;</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Creates a dicitonary with nuclide codes</span>
+<span class="sd">        in zzaaam formate as keys, and material composition</span>
+<span class="sd">        in mass percent as values</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        mat : openmc.Material</span>
+<span class="sd">            A material</span>
+<span class="sd">        percent_type : str</span>
+<span class="sd">            Percent type of material</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">            mass_dict : dict of int to float</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">percents</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mat</span><span class="o">.</span><span class="n">nuclides</span><span class="p">))</span>
+        <span class="n">nucs</span> <span class="o">=</span> <span class="p">[]</span>
+        <span class="n">at_mass</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mat</span><span class="o">.</span><span class="n">nuclides</span><span class="p">))</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="p">(</span><span class="n">nuc</span><span class="p">,</span> <span class="n">pt</span><span class="p">,</span> <span class="n">tp</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">mat</span><span class="o">.</span><span class="n">nuclides</span><span class="p">):</span>
+            <span class="n">nucs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span>
+            <span class="n">percents</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">pt</span>
+            <span class="n">at_mass</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">atomic_mass</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">percent_type</span> <span class="o">==</span> <span class="s1">&#39;ao&#39;</span><span class="p">:</span>
+            <span class="n">mass_percents</span> <span class="o">=</span> <span class="n">percents</span><span class="o">*</span><span class="n">at_mass</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">percents</span><span class="p">,</span> <span class="n">at_mass</span><span class="p">)</span>
+        <span class="k">elif</span> <span class="n">percent_type</span> <span class="o">==</span> <span class="s1">&#39;wo&#39;</span><span class="p">:</span>
+            <span class="n">mass_percents</span> <span class="o">=</span> <span class="n">percents</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">percent_type</span><span class="si">}</span><span class="s1"> is not a valid percent type&#39;</span><span class="p">)</span>
 
-<div class="viewcode-block" id="OpenMCDepcode.run_depletion_step"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.run_depletion_step">[docs]</a>    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">threads</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nucs</span><span class="p">,</span> <span class="n">mass_percents</span><span class="p">))</span>
+
+    <span class="k">def</span> <span class="nf">_get_power_from_tallies</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sp</span><span class="p">,</span> <span class="n">power</span><span class="p">):</span>
+        <span class="n">fission_energy</span> <span class="o">=</span> <span class="n">sp</span><span class="o">.</span><span class="n">get_tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;fission_energy&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">mean</span><span class="o">.</span><span class="n">flatten</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span> <span class="c1"># eV / src</span>
+        <span class="n">heating</span> <span class="o">=</span> <span class="n">sp</span><span class="o">.</span><span class="n">get_tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;heating&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">mean</span><span class="o">.</span><span class="n">flatten</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span> <span class="c1"># eV / src</span>
+        <span class="n">Hp</span> <span class="o">=</span> <span class="n">JOULE_PER_EV</span> <span class="o">*</span> <span class="n">heating</span> <span class="c1"># J / src</span>
+        <span class="n">f</span> <span class="o">=</span> <span class="n">power</span> <span class="o">/</span> <span class="n">Hp</span> <span class="c1"># src / s</span>
+        <span class="n">power</span> <span class="o">=</span> <span class="n">fission_energy</span> <span class="o">*</span> <span class="n">f</span> <span class="o">*</span> <span class="n">JOULE_PER_EV</span> <span class="c1"># J / s</span>
+        <span class="k">return</span> <span class="n">power</span>
+
+<div class="viewcode-block" id="OpenMCDepcode.nuclide_code_to_name"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.nuclide_code_to_name">[docs]</a>    <span class="k">def</span> <span class="nf">nuclide_code_to_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">nuc</span></div>
+
+<div class="viewcode-block" id="OpenMCDepcode.name_to_nuclide_code"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.name_to_nuclide_code">[docs]</a>    <span class="k">def</span> <span class="nf">name_to_nuclide_code</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nucname</span><span class="p">):</span>
+        <span class="n">z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">zam</span><span class="p">(</span><span class="n">nucname</span><span class="p">)</span>
+        <span class="n">code</span> <span class="o">=</span> <span class="n">z</span> <span class="o">*</span> <span class="mi">1000</span> <span class="o">+</span> <span class="n">a</span>
+        <span class="k">if</span> <span class="n">m</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">code</span> <span class="o">+=</span> <span class="mi">300</span> <span class="o">+</span> <span class="mi">100</span> <span class="o">*</span> <span class="n">m</span>
+        <span class="k">return</span> <span class="n">code</span></div>
+
+<div class="viewcode-block" id="OpenMCDepcode.run_depletion_step"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.run_depletion_step">[docs]</a>    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">threads</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Runs a depletion step in OpenMC as a subprocess</span>
 
 <span class="sd">        mpi_args : list of str</span>
@@ -214,36 +463,27 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># need to add flow control for plots option</span>
         <span class="n">args</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;python&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span>
+                <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">),</span>
                 <span class="s1">&#39;--materials&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">,</span>
+                <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">),</span>
                 <span class="s1">&#39;--geometry&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;geometry&#39;</span><span class="p">],</span>
+                <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;geometry&#39;</span><span class="p">]),</span>
                 <span class="s1">&#39;--settings&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">],</span>
+                <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">]),</span>
                 <span class="s1">&#39;--tallies&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">],</span>
+                <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">]),</span>
                 <span class="s1">&#39;--directory&#39;</span><span class="p">,</span>
                 <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">output_path</span><span class="p">)]</span>
         <span class="k">if</span> <span class="n">mpi_args</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">args</span> <span class="o">=</span> <span class="n">mpi_args</span> <span class="o">+</span> <span class="n">args</span>
 
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span>
-                <span class="n">args</span><span class="p">,</span>
-                <span class="n">cwd</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span>
-                <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">STDOUT</span><span class="p">)</span>
-        <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">error</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">error</span><span class="o">.</span><span class="n">output</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span>
-            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> RUN FAILED</span><span class="se">\n</span><span class="s1"> see error message above&#39;</span>
-                               <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Finished OpenMC Run&#39;</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="OpenMCDepcode.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">run_depletion_step</span><span class="p">(</span><span class="n">mpi_args</span><span class="p">,</span> <span class="n">args</span><span class="p">)</span></div>
+
+<div class="viewcode-block" id="OpenMCDepcode.switch_to_next_geometry"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Switches the geometry file for the OpenMC depletion simulation to</span>
 <span class="sd">        the next geometry file in `geo_file_paths`.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
         <span class="n">mats</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
         <span class="n">next_geometry</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Geometry</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
             <span class="n">path</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="mi">0</span><span class="p">),</span>
@@ -251,7 +491,7 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
         <span class="n">next_geometry</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;geometry&#39;</span><span class="p">])</span>
         <span class="k">del</span> <span class="n">mats</span><span class="p">,</span> <span class="n">next_geometry</span></div>
 
-<div class="viewcode-block" id="OpenMCDepcode.write_runtime_input"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_runtime_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">depletion_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
+<div class="viewcode-block" id="OpenMCDepcode.write_runtime_input"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_runtime_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">depletion_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Write OpenMC runtime input files for running depletion step.</span>
 
 <span class="sd">        Parameters</span>
@@ -266,31 +506,35 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="k">if</span> <span class="n">depletion_step</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">restart</span><span class="p">:</span>
+            <span class="n">geo_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+            <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
             <span class="n">materials</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">[</span><span class="s1">&#39;materials&#39;</span><span class="p">])</span>
             <span class="n">geometry</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Geometry</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">materials</span><span class="o">=</span><span class="n">materials</span><span class="p">)</span>
+                <span class="n">geo_file</span><span class="p">,</span> <span class="n">materials</span><span class="o">=</span><span class="n">materials</span><span class="p">)</span>
             <span class="n">settings</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Settings</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">])</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">particles</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">inactive</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">batches</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span>
 
         <span class="k">else</span><span class="p">:</span>
+            <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
             <span class="n">materials</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
             <span class="n">geometry</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Geometry</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;geometry&#39;</span><span class="p">],</span> <span class="n">materials</span><span class="o">=</span><span class="n">materials</span><span class="p">)</span>
             <span class="n">settings</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Settings</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">])</span>
 
+        <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">particles</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">inactive</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="n">settings</span><span class="o">.</span><span class="n">batches</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span>
+
         <span class="n">materials</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
         <span class="n">geometry</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;geometry&#39;</span><span class="p">])</span>
         <span class="n">settings</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">])</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">write_depletion_settings</span><span class="p">(</span><span class="n">reactor</span><span class="p">,</span> <span class="n">depletion_step</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">write_saltproc_openmc_tallies</span><span class="p">(</span><span class="n">materials</span><span class="p">,</span> <span class="n">geometry</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">write_saltproc_openmc_tallies</span><span class="p">(</span><span class="n">materials</span><span class="p">,</span> <span class="n">geometry</span><span class="p">,</span> <span class="n">_DELAYED_ENERGY_BOUNDS</span><span class="p">,</span> <span class="n">_N_DELAYED_GROUPS</span><span class="p">)</span>
         <span class="k">del</span> <span class="n">materials</span><span class="p">,</span> <span class="n">geometry</span><span class="p">,</span> <span class="n">settings</span></div>
 
-<div class="viewcode-block" id="OpenMCDepcode.write_depletion_settings"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_depletion_settings">[docs]</a>    <span class="k">def</span> <span class="nf">write_depletion_settings</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">):</span>
+<div class="viewcode-block" id="OpenMCDepcode.write_depletion_settings"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_depletion_settings">[docs]</a>    <span class="k">def</span> <span class="nf">write_depletion_settings</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">step_idx</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Write the depeletion settings for the ``openmc.deplete``</span>
 <span class="sd">        module.</span>
 
@@ -332,7 +576,7 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
             <span class="n">depletion_settings_json</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">depletion_settings</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span>
             <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">depletion_settings_json</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="OpenMCDepcode.update_depletable_materials"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.update_depletable_materials">[docs]</a>    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
+<div class="viewcode-block" id="OpenMCDepcode.update_depletable_materials"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.update_depletable_materials">[docs]</a>    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Updates material file with reprocessed material compositions.</span>
 
 <span class="sd">        Parameters</span>
@@ -347,9 +591,29 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">        dep_end_time : float</span>
 <span class="sd">            Current time at the end of the depletion step (d).</span>
 
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="OpenMCDepcode.write_saltproc_openmc_tallies"><a class="viewcode-back" href="../../src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_saltproc_openmc_tallies">[docs]</a>    <span class="k">def</span> <span class="nf">write_saltproc_openmc_tallies</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">materials</span><span class="p">,</span> <span class="n">geometry</span><span class="p">):</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
+        <span class="n">runtime_materials</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Materials</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
+
+        <span class="k">for</span> <span class="n">material</span> <span class="ow">in</span> <span class="n">runtime_materials</span><span class="p">:</span>
+            <span class="c1"># depletable materials only</span>
+            <span class="k">if</span> <span class="n">material</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                <span class="n">components</span> <span class="o">=</span> <span class="p">{}</span>
+                <span class="k">for</span> <span class="n">nuc_name</span><span class="p">,</span> <span class="n">mass_fraction</span> <span class="ow">in</span> <span class="n">mats</span><span class="p">[</span><span class="n">material</span><span class="o">.</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                    <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">mass_fraction</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">or</span> <span class="n">mass_fraction</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+                        <span class="n">components</span><span class="p">[</span><span class="n">nuc_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mass_fraction</span>
+                <span class="n">material</span><span class="o">.</span><span class="n">set_density</span><span class="p">(</span><span class="s1">&#39;g/cm3&#39;</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="n">material</span><span class="o">.</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">)</span>
+                <span class="n">material</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="n">material</span><span class="o">.</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span>
+                <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">material</span><span class="o">.</span><span class="n">get_elements</span><span class="p">():</span>
+                    <span class="n">material</span><span class="o">.</span><span class="n">remove_element</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+                <span class="n">material</span><span class="o">.</span><span class="n">add_components</span><span class="p">(</span><span class="n">components</span><span class="p">,</span> <span class="n">percent_type</span><span class="o">=</span><span class="s1">&#39;wo&#39;</span><span class="p">)</span>
+
+        <span class="n">runtime_materials</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
+        <span class="k">del</span> <span class="n">runtime_materials</span>
+        <span class="k">del</span> <span class="n">material</span></div>
+
+
+<div class="viewcode-block" id="OpenMCDepcode.write_saltproc_openmc_tallies"><a class="viewcode-back" href="../../api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_saltproc_openmc_tallies">[docs]</a>    <span class="k">def</span> <span class="nf">write_saltproc_openmc_tallies</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">materials</span><span class="p">,</span> <span class="n">geometry</span><span class="p">,</span> <span class="n">energy_bounds</span><span class="p">,</span> <span class="n">n_delayed_groups</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Write tallies for calculating burnup and delayed neutron</span>
 <span class="sd">        parameters.</span>
@@ -360,45 +624,73 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
 <span class="sd">            The materials for the depletion simulation</span>
 <span class="sd">        geometry : `openmc.Geometry` object</span>
 <span class="sd">            The geometry for the depletion simulation</span>
+<span class="sd">        energy_bounds : iterable of float</span>
+<span class="sd">            Energy group boundaries for calculating :math:`\\beta`, the delayed</span>
+<span class="sd">            neutron fraction, and :math:`\\lambda`, the decay rate for delayed</span>
+<span class="sd">            neutron precursors.</span>
+<span class="sd">        n_delayed_groups : int</span>
+<span class="sd">            Number of delayed groups for calculating :math:`\\beta`, the delayed</span>
+<span class="sd">            neutron fraction, and :math:`\\lambda`, the decay rate for delayed</span>
+<span class="sd">            neutron precursors.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">tallies</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tallies</span><span class="p">()</span>
 
-        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;delayed-fission-neutrons&#39;</span><span class="p">)</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">DelayedGroupFilter</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="mi">6</span><span class="p">])]</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;delayed-nu-fission&#39;</span><span class="p">]</span>
-        <span class="n">tallies</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tally</span><span class="p">)</span>
+        <span class="n">ff_nuclides</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_fissile_fertile_nuclides</span><span class="p">()</span>
+        <span class="n">energy_groups</span> <span class="o">=</span> <span class="n">EnergyGroups</span><span class="p">(</span><span class="n">energy_bounds</span><span class="p">)</span>
+        <span class="n">delayed_groups</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">n_delayed_groups</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
 
-        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;total-fission-neutrons&#39;</span><span class="p">)</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">UniverseFilter</span><span class="p">(</span><span class="n">geometry</span><span class="o">.</span><span class="n">root_universe</span><span class="p">)]</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;nu-fission&#39;</span><span class="p">]</span>
-        <span class="n">tallies</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tally</span><span class="p">)</span>
+        <span class="n">delayed_kwargs</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;domain&#39;</span><span class="p">:</span> <span class="n">geometry</span><span class="o">.</span><span class="n">root_universe</span><span class="p">,</span>
+                          <span class="s1">&#39;domain_type&#39;</span><span class="p">:</span> <span class="s1">&#39;universe&#39;</span><span class="p">,</span>
+                          <span class="s1">&#39;energy_groups&#39;</span><span class="p">:</span> <span class="n">energy_groups</span><span class="p">,</span>
+                          <span class="s1">&#39;delayed_groups&#39;</span><span class="p">:</span> <span class="n">delayed_groups</span><span class="p">}</span>
+
+        <span class="n">delayed_lambda</span> <span class="o">=</span> <span class="n">DecayRate</span><span class="p">(</span><span class="o">**</span><span class="n">delayed_kwargs</span><span class="p">)</span>
+        <span class="n">beta</span> <span class="o">=</span> <span class="n">Beta</span><span class="p">(</span><span class="o">**</span><span class="n">delayed_kwargs</span><span class="p">)</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">_delayed_lambda</span> <span class="o">=</span> <span class="n">delayed_lambda</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_beta</span> <span class="o">=</span> <span class="n">beta</span>
 
-        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;precursor-decay-constants&#39;</span><span class="p">)</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">DelayedGroupFilter</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">,</span> <span class="mi">5</span><span class="p">,</span> <span class="mi">6</span><span class="p">])]</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;decay-rate&#39;</span><span class="p">]</span>
+        <span class="n">tallies</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tallies</span><span class="p">()</span>
+        <span class="n">tallies</span> <span class="o">+=</span> <span class="nb">list</span><span class="p">(</span><span class="n">delayed_lambda</span><span class="o">.</span><span class="n">tallies</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
+        <span class="n">tallies</span> <span class="o">+=</span> <span class="nb">list</span><span class="p">(</span><span class="n">beta</span><span class="o">.</span><span class="n">tallies</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
+
+        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;breeding_ratio_tally&#39;</span><span class="p">)</span>
+        <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">UniverseFilter</span><span class="p">(</span><span class="n">geometry</span><span class="o">.</span><span class="n">root_universe</span><span class="p">)]</span>
+        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;(n,gamma)&#39;</span><span class="p">,</span> <span class="s1">&#39;absorption&#39;</span><span class="p">]</span>
+        <span class="n">tally</span><span class="o">.</span><span class="n">nuclides</span> <span class="o">=</span> <span class="n">ff_nuclides</span>
         <span class="n">tallies</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tally</span><span class="p">)</span>
 
-        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;fission-energy&#39;</span><span class="p">)</span>
+        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;fission_energy&#39;</span><span class="p">)</span>
         <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">UniverseFilter</span><span class="p">(</span><span class="n">geometry</span><span class="o">.</span><span class="n">root_universe</span><span class="p">)]</span>
-        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span>
-            <span class="s1">&#39;fission-q-recoverable&#39;</span><span class="p">,</span>
-            <span class="s1">&#39;fission-q-prompt&#39;</span><span class="p">,</span>
-            <span class="s1">&#39;kappa-fission&#39;</span><span class="p">]</span>
+        <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;kappa-fission&#39;</span><span class="p">]</span>
         <span class="n">tallies</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tally</span><span class="p">)</span>
 
-        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;normalization-factor&#39;</span><span class="p">)</span>
+        <span class="n">tally</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">Tally</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s1">&#39;heating&#39;</span><span class="p">)</span>
         <span class="n">tally</span><span class="o">.</span><span class="n">filters</span> <span class="o">=</span> <span class="p">[</span><span class="n">openmc</span><span class="o">.</span><span class="n">UniverseFilter</span><span class="p">(</span><span class="n">geometry</span><span class="o">.</span><span class="n">root_universe</span><span class="p">)]</span>
         <span class="n">tally</span><span class="o">.</span><span class="n">scores</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;heating&#39;</span><span class="p">]</span>
         <span class="n">tallies</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tally</span><span class="p">)</span>
 
-        <span class="n">out_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;settings&#39;</span><span class="p">])</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">out_path</span><span class="p">,</span> <span class="s1">&#39;tallies.xml&#39;</span><span class="p">)</span>
-        <span class="n">tallies</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">])</span>
-        <span class="k">del</span> <span class="n">tallies</span></div></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;tallies.xml&#39;</span>
+        <span class="n">tallies</span><span class="o">.</span><span class="n">export_to_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">[</span><span class="s1">&#39;tallies&#39;</span><span class="p">])</span></div>
+
+    <span class="k">def</span> <span class="nf">_get_fissile_fertile_nuclides</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">nuclides_with_data</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+        <span class="n">data_lib</span> <span class="o">=</span> <span class="n">DataLibrary</span><span class="o">.</span><span class="n">from_xml</span><span class="p">()</span>
+        <span class="k">for</span> <span class="n">library</span> <span class="ow">in</span> <span class="n">data_lib</span><span class="o">.</span><span class="n">libraries</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">library</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">!=</span> <span class="s1">&#39;neutron&#39;</span><span class="p">:</span>
+                <span class="k">continue</span>
+            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">library</span><span class="p">[</span><span class="s1">&#39;materials&#39;</span><span class="p">]:</span>
+                <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">nuclides_with_data</span><span class="p">:</span>
+                    <span class="n">nuclides_with_data</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
 
+        <span class="n">chain</span> <span class="o">=</span> <span class="n">Chain</span><span class="o">.</span><span class="n">from_xml</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">chain_file_path</span><span class="p">)</span>
+        <span class="n">burnable_nucs</span> <span class="o">=</span> <span class="p">[</span><span class="n">nuc</span><span class="o">.</span><span class="n">name</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">chain</span><span class="o">.</span><span class="n">nuclides</span>
+                         <span class="k">if</span> <span class="n">nuc</span><span class="o">.</span><span class="n">name</span> <span class="ow">in</span> <span class="n">nuclides_with_data</span><span class="p">]</span>
 
+        <span class="bp">self</span><span class="o">.</span><span class="n">_fissile_nucs</span> <span class="o">=</span> <span class="nb">set</span><span class="p">([</span><span class="n">nuc</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">_FISSILE_NUCLIDES</span> <span class="k">if</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">burnable_nucs</span><span class="p">])</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_fertile_nucs</span> <span class="o">=</span> <span class="nb">set</span><span class="p">([</span><span class="n">nuc</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">_FERTILE_NUCLIDES</span> <span class="k">if</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">burnable_nucs</span><span class="p">])</span>
+
+        <span class="k">return</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fissile_nucs</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_fertile_nucs</span><span class="p">))</span></div>
 </pre></div>
 
            </div>
@@ -429,11 +721,6 @@ <h1>Source code for saltproc.openmc_depcode</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="openmc_depcode.html">master</a></dd>
diff --git a/master/_modules/saltproc/process.html b/master/_modules/saltproc/process.html
index ed9d99784..f5911c6c4 100644
--- a/master/_modules/saltproc/process.html
+++ b/master/_modules/saltproc/process.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -76,49 +78,51 @@
              
   <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;Process module&quot;&quot;&quot;</span>
+<span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">from</span> <span class="nn">copy</span> <span class="kn">import</span> <span class="n">deepcopy</span>
 <span class="kn">from</span> <span class="nn">math</span> <span class="kn">import</span> <span class="n">exp</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
 
 
-<div class="viewcode-block" id="Process"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process">[docs]</a><span class="k">class</span> <span class="nc">Process</span><span class="p">():</span>
+<div class="viewcode-block" id="Process"><a class="viewcode-back" href="../../api/generated/saltproc.Process.html#saltproc.Process">[docs]</a><span class="k">class</span> <span class="nc">Process</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;Represents an aribtrary processing component that extracts nuclides from</span>
 <span class="sd">    a material.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    mass_flowrate : float</span>
+<span class="sd">        mass flow rate of the material flow (g/s)</span>
+<span class="sd">    capacity : float</span>
+<span class="sd">        maximum mass flow rate of the material flow which current process</span>
+<span class="sd">        can handle (g/s)</span>
+<span class="sd">    volume : float</span>
+<span class="sd">        total volume of the current facility (:math:`cm^3`)</span>
+<span class="sd">    efficiency : dict of str to float or str</span>
+
+<span class="sd">        ``key``</span>
+<span class="sd">            element name for removal (not isotope)</span>
+<span class="sd">        ``value``</span>
+<span class="sd">            removal efficency for the isotope as a weight fraction (float)</span>
+<span class="sd">            or a function eps(x,m,t,P,L) (str)</span>
+<span class="sd">    optional_parameter : float</span>
+<span class="sd">        user can define any custom parameter in the input file describing</span>
+<span class="sd">        processes and use it in efficiency function</span>
+
 <span class="sd">     &quot;&quot;&quot;</span>
 
-<div class="viewcode-block" id="Process.__init__"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Initializes the Process object.</span>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        capacity : float</span>
-<span class="sd">            maximum mass flow rate of the material flow which current process</span>
-<span class="sd">            can handle (g/s)</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            total volume of the current facility (:math:`cm^3`)</span>
-<span class="sd">        efficiency : dict of str to float or str</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                element name for removal (not isotope)</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficency for the isotope as a weight fraction (float)</span>
-<span class="sd">                or a function eps(x,m,t,P,L) (str)</span>
-<span class="sd">        optional_parameter : float</span>
-<span class="sd">            user can define any custom parameter in the input file describing</span>
-<span class="sd">            processes and use it in efficiency function</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">for</span> <span class="n">dictionary</span> <span class="ow">in</span> <span class="n">initial_data</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">dictionary</span><span class="p">:</span>
                 <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">dictionary</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
         <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">])</span></div>
+            <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
 
-<div class="viewcode-block" id="Process.calculate_removal_efficiency"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
+<div class="viewcode-block" id="Process.calculate_removal_efficiency"><a class="viewcode-back" href="../../api/generated/saltproc.Process.html#saltproc.Process.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Calculate the value of the removal efficiency for a given nuclide</span>
 <span class="sd">        in this process.</span>
 
@@ -147,7 +151,7 @@ <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
         <span class="n">efficiency</span> <span class="o">=</span> <span class="nb">eval</span><span class="p">(</span><span class="n">eps</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">efficiency</span></div>
 
-<div class="viewcode-block" id="Process.check_mass_conservation"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">[docs]</a>    <span class="k">def</span> <span class="nf">check_mass_conservation</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Process.check_mass_conservation"><a class="viewcode-back" href="../../api/generated/saltproc.Process.html#saltproc.Process.check_mass_conservation">[docs]</a>    <span class="k">def</span> <span class="nf">check_mass_conservation</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Checking that Process.outflow + Process.waste_stream is equal</span>
 <span class="sd">        Process.inflow and the total mass is being conserved. Returns `True` if</span>
 <span class="sd">        the mass conserved or `False` if its mismatched.</span>
@@ -155,7 +159,7 @@ <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
         <span class="n">out_stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">outflow</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">waste_stream</span>
         <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_array_equal</span><span class="p">(</span><span class="n">out_stream</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">inflow</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Process.process_material"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.process_material">[docs]</a>    <span class="k">def</span> <span class="nf">process_material</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">inflow</span><span class="p">):</span>
+<div class="viewcode-block" id="Process.process_material"><a class="viewcode-back" href="../../api/generated/saltproc.Process.html#saltproc.Process.process_material">[docs]</a>    <span class="k">def</span> <span class="nf">process_material</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">inflow</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Updates :class:`Materialflow` object `inflow` by removing target</span>
 <span class="sd">        nuclides with specific efficiencies in single component of fuel</span>
 <span class="sd">        reprocessing system and returns waste stream Materialflow object.</span>
@@ -174,41 +178,66 @@ <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
 <span class="sd">            reprocessing system component.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">waste_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">thru_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Xe concentration in inflow before </span><span class="si">% f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">inflow</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">])</span>
-
-        <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">serpent</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">if</span> <span class="n">nuc_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">:</span>
-                <span class="c1"># Evaluate removal efficiency for nuc_name (float)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">nuc_name</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="bp">self</span><span class="o">.</span><span class="n">calculate_removal_efficiency</span><span class="p">(</span><span class="n">nuc_name</span><span class="p">)</span>
-
-                <span class="n">thru_nucvec</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">])</span> <span class="o">*</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="mf">1.0</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">nuc_name</span><span class="p">])</span>
-
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="p">[</span><span class="n">nuc</span><span class="p">])</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">nuc_name</span><span class="p">]</span>
-
-            <span class="c1"># Assume zero removal</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">thru_nucvec</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">])</span>
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-        <span class="n">waste_stream</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">waste_nucvec</span><span class="p">)</span>
+        <span class="n">waste_mass</span> <span class="o">=</span> <span class="p">{}</span>
+        <span class="n">thru_mass</span> <span class="o">=</span> <span class="p">{}</span>
+
+        <span class="n">total_waste_mass</span> <span class="o">=</span> <span class="mf">0.0</span>
+        <span class="n">total_thru_mass</span> <span class="o">=</span> <span class="mf">0.0</span>
+
+        <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">):</span>
+            <span class="n">process_elements</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+            <span class="n">process_nucs</span> <span class="o">=</span> <span class="p">[</span><span class="n">nuc</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span> \
+                            <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;([A-Z]+)([0-9]+)&quot;</span><span class="p">,</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">I</span><span class="p">)</span><span class="o">.</span><span class="n">groups</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span> \
+                            <span class="ow">in</span> <span class="n">process_elements</span><span class="p">]</span>
+            <span class="n">thru_nucs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">difference</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">process_nucs</span><span class="p">)))</span>
+
+            <span class="n">efficiency</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">calculate_removal_efficiency</span><span class="p">(</span><span class="n">elem</span><span class="p">)</span> \
+                          <span class="k">for</span> <span class="n">elem</span> <span class="ow">in</span> <span class="n">process_elements</span><span class="p">]</span>
+            <span class="n">efficiency</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">process_elements</span><span class="p">,</span> <span class="n">efficiency</span><span class="p">))</span>
+
+            <span class="n">nuc_efficiency</span> <span class="o">=</span> <span class="p">{}</span>
+            <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">process_nucs</span><span class="p">:</span>
+                <span class="n">elem</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s2">&quot;([A-Z]+)([0-9]+)&quot;</span><span class="p">,</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">re</span><span class="o">.</span><span class="n">I</span><span class="p">)</span><span class="o">.</span><span class="n">groups</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span>
+                <span class="n">nuc_efficiency</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> <span class="o">=</span> <span class="n">efficiency</span><span class="p">[</span><span class="n">elem</span><span class="p">]</span>
+
+            <span class="n">thru_mass</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">inflow</span><span class="o">.</span><span class="n">get_mass</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span> <span class="o">*</span> \
+                                  <span class="p">(</span><span class="mf">1.0</span> <span class="o">-</span> <span class="n">nuc_efficiency</span><span class="p">[</span><span class="n">nuc</span><span class="p">])</span> \
+                                  <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">process_nucs</span><span class="p">])</span>
+            <span class="n">waste_mass</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">inflow</span><span class="o">.</span><span class="n">get_mass</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span> <span class="o">*</span> \
+                                   <span class="n">nuc_efficiency</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span> \
+                                   <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">process_nucs</span><span class="p">])</span>
+
+            <span class="n">total_waste_mass</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">waste_mass</span><span class="p">)</span>
+            <span class="n">total_thru_mass</span> <span class="o">=</span> <span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">-</span> <span class="n">total_waste_mass</span>
+
+            <span class="n">waste_mass</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">process_nucs</span><span class="p">,</span> <span class="n">waste_mass</span> <span class="o">/</span> <span class="n">total_waste_mass</span><span class="p">))</span>
+
+            <span class="n">thru_mass_1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">inflow</span><span class="o">.</span><span class="n">get_mass</span><span class="p">(</span><span class="n">nuc</span><span class="p">)</span> <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">thru_nucs</span><span class="p">])</span>
+
+            <span class="n">thru_mass_1</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">thru_nucs</span><span class="p">,</span> <span class="n">thru_mass_1</span> <span class="o">/</span> <span class="n">total_thru_mass</span><span class="p">))</span>
+            <span class="n">thru_mass</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">process_nucs</span><span class="p">,</span> <span class="n">thru_mass</span> <span class="o">/</span> <span class="n">total_thru_mass</span><span class="p">))</span>
+            <span class="n">thru_mass</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">thru_mass_1</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">total_thru_mass</span> <span class="o">=</span> <span class="n">inflow</span><span class="o">.</span><span class="n">mass</span>
+            <span class="n">thru_mass</span> <span class="o">=</span> <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+
+        <span class="n">waste_stream</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">comp</span><span class="o">=</span><span class="n">waste_mass</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">waste_mass</span><span class="p">)</span> <span class="ow">and</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">waste_mass</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span> <span class="o">&gt;</span> <span class="mf">0.0</span><span class="p">:</span>
+            <span class="n">waste_stream</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">total_waste_mass</span> <span class="o">/</span> <span class="n">waste_stream</span><span class="o">.</span><span class="n">mass</span>
+            <span class="n">waste_stream</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">total_waste_mass</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">waste_stream</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="mf">0.0</span>
         <span class="c1"># preserve inflow attributes</span>
         <span class="n">thru_flow</span> <span class="o">=</span> <span class="n">deepcopy</span><span class="p">(</span><span class="n">inflow</span><span class="p">)</span>
-        <span class="n">thru_flow</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="n">thru_nucvec</span>
-        <span class="n">thru_flow</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">inflow</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">thru_flow</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">-</span> <span class="n">waste_stream</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="n">thru_flow</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Xe concentration in thruflow: </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">thru_flow</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">])</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Waste mass: </span><span class="si">%f</span><span class="s2"> g</span><span class="se">\n</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">waste_stream</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
+        <span class="n">thru_flow</span><span class="o">.</span><span class="n">replace_components</span><span class="p">(</span><span class="n">thru_mass</span><span class="p">)</span>
+        <span class="c1"># initial guess</span>
+        <span class="n">thru_flow</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">inflow</span><span class="o">.</span><span class="n">volume</span> <span class="o">-</span> <span class="n">waste_stream</span><span class="o">.</span><span class="n">volume</span>
+        <span class="c1"># correction</span>
+        <span class="n">thru_flow</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">thru_flow</span><span class="o">.</span><span class="n">volume</span> <span class="o">*</span> \
+            <span class="n">total_thru_mass</span> <span class="o">/</span> <span class="n">thru_flow</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span>
+        <span class="n">thru_flow</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">total_thru_mass</span>
 
-        <span class="k">del</span> <span class="n">thru_nucvec</span><span class="p">,</span> <span class="n">waste_nucvec</span><span class="p">,</span> <span class="n">nuc_name</span>
+        <span class="k">del</span> <span class="n">thru_mass</span><span class="p">,</span> <span class="n">waste_mass</span>
 
         <span class="k">return</span> <span class="n">thru_flow</span><span class="p">,</span> <span class="n">waste_stream</span></div></div>
 </pre></div>
@@ -241,11 +270,6 @@ <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
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   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
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     <dl>
       <dt>Branches</dt>
       <dd><a href="process.html">master</a></dd>
diff --git a/master/_modules/saltproc/separator.html b/master/_modules/saltproc/separator.html
index 24cf7ff01..36c9022b0 100644
--- a/master/_modules/saltproc/separator.html
+++ b/master/_modules/saltproc/separator.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -80,9 +82,41 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
 
 
-<div class="viewcode-block" id="Separator"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator">[docs]</a><span class="k">class</span> <span class="nc">Separator</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
+<div class="viewcode-block" id="Separator"><a class="viewcode-back" href="../../api/generated/saltproc.Separator.html#saltproc.Separator">[docs]</a><span class="k">class</span> <span class="nc">Separator</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Represents a bubble separator.</span>
 
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    q_salt : float</span>
+<span class="sd">        volumetric salt flow rate (m^3/s)</span>
+<span class="sd">        Default: 0.1</span>
+<span class="sd">    q_he : float</span>
+<span class="sd">        volumetric helium flow rate (m^3/s)</span>
+<span class="sd">        Default: 0.005</span>
+<span class="sd">    do : float</span>
+<span class="sd">        gas outlet diameter (m)</span>
+<span class="sd">        Ranging from 1~3cm in our simulations</span>
+<span class="sd">        Default: 0.02</span>
+<span class="sd">    dp : float</span>
+<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
+<span class="sd">        Default: 0.1</span>
+<span class="sd">    db : float</span>
+<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
+<span class="sd">        Default: 0.001</span>
+<span class="sd">    deltap : float</span>
+<span class="sd">        Pressure difference between the inlet and the gas outlet (Pa)</span>
+<span class="sd">        (from 2e5 to 5e5 Pa)</span>
+<span class="sd">        Default: 4e5</span>
+<span class="sd">    temp_room: real</span>
+<span class="sd">        room temperature (Kelvin)</span>
+<span class="sd">        Default: 900</span>
+<span class="sd">    area : float</span>
+<span class="sd">        contactor cross-section (m^2)</span>
+<span class="sd">    jl : float</span>
+<span class="sd">        liquid superficial velocity (m/s)</span>
+<span class="sd">    alpha : float</span>
+<span class="sd">        void fraction</span>
+
 <span class="sd">    Attributes</span>
 <span class="sd">    ----------</span>
 <span class="sd">    q_salt : float</span>
@@ -124,49 +158,19 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
 <span class="sd">    ----------</span>
 <span class="sd">    [1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
 <span class="sd">    Sensitivity Analysis. In preparation</span>
+
+<span class="sd">    Notes</span>
+<span class="sd">    -----</span>
+<span class="sd">    Default values from Jiaqi&#39;s simulation</span>
+
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="n">k</span> <span class="o">=</span> <span class="mf">1.0</span>
 
-<div class="viewcode-block" id="Separator.__init__"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">do</span><span class="o">=</span><span class="mf">0.02</span><span class="p">,</span> <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">do</span><span class="o">=</span><span class="mf">0.02</span><span class="p">,</span> <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>
                  <span class="n">deltap</span><span class="o">=</span><span class="mf">4e5</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Initializes the Separator object.</span>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        do : float</span>
-<span class="sd">            gas outlet diameter (m)</span>
-<span class="sd">            Ranging from 1~3cm in our simulations</span>
-<span class="sd">            Default: 0.02</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        deltap : float</span>
-<span class="sd">            Pressure difference between the inlet and the gas outlet (Pa)</span>
-<span class="sd">            (from 2e5 to 5e5 Pa)</span>
-<span class="sd">            Default: 4e5</span>
-<span class="sd">        temp_room: real</span>
-<span class="sd">            room temperature (Kelvin)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        jl : float</span>
-<span class="sd">            liquid superficial velocity (m/s)</span>
-<span class="sd">        alpha : float</span>
-<span class="sd">            void fraction</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values from Jiaqi&#39;s simulation</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
@@ -179,9 +183,9 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">jl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span>
 
-<div class="viewcode-block" id="Separator.calculate_removal_efficiency"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
+<div class="viewcode-block" id="Separator.calculate_removal_efficiency"><a class="viewcode-back" href="../../api/generated/saltproc.Separator.html#saltproc.Separator.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Calculate the value of the removal efficiency for a given nuclide</span>
 <span class="sd">        in this process.</span>
 
@@ -203,7 +207,7 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">nuc_name</span><span class="p">]</span></div>
 
-<div class="viewcode-block" id="Separator.description"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Separator.description"><a class="viewcode-back" href="../../api/generated/saltproc.Separator.html#saltproc.Separator.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in</span>
 <span class="sd">        sensitivity analysis</span>
 
@@ -237,7 +241,7 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">plt_dict</span></div>
 
-<div class="viewcode-block" id="Separator.eff"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Separator.eff"><a class="viewcode-back" href="../../api/generated/saltproc.Separator.html#saltproc.Separator.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Evaluates gas/bubble separation efficiency from Jiaqi&#39;s correlation</span>
 
 <span class="sd">        Returns</span>
@@ -302,11 +306,6 @@ <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="separator.html">master</a></dd>
diff --git a/master/_modules/saltproc/serpent_depcode.html b/master/_modules/saltproc/serpent_depcode.html
index 96ae0b060..ebfbbf69c 100644
--- a/master/_modules/saltproc/serpent_depcode.html
+++ b/master/_modules/saltproc/serpent_depcode.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -76,29 +78,58 @@
              
   <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">pathlib</span> <span class="kn">import</span> <span class="n">Path</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">shutil</span>
 <span class="kn">import</span> <span class="nn">re</span>
 
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">serpent</span>
+<span class="kn">import</span> <span class="nn">serpentTools</span>
+<span class="kn">import</span> <span class="nn">openmc</span>
+<span class="kn">import</span> <span class="nn">openmc.data</span>
+<span class="kn">from</span> <span class="nn">math</span> <span class="kn">import</span> <span class="n">floor</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">saltproc.abc</span> <span class="kn">import</span> <span class="n">Depcode</span>
+<span class="kn">from</span> <span class="nn">saltproc.depcode</span> <span class="kn">import</span> <span class="n">Depcode</span>
 
-<div class="viewcode-block" id="SerpentDepcode"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode">[docs]</a><span class="k">class</span> <span class="nc">SerpentDepcode</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode">[docs]</a><span class="k">class</span> <span class="nc">SerpentDepcode</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Interface for running depletion steps in Serpent, as well as obtaining</span>
 <span class="sd">    depletion step results.</span>
 
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    output_path : str</span>
+<span class="sd">        Path to results storage directory.</span>
+<span class="sd">    exec_path : str</span>
+<span class="sd">        Path to Serpent2 executable.</span>
+<span class="sd">    template_input_file_path : str</span>
+<span class="sd">        Path to user input file for Serpent2</span>
+<span class="sd">    geo_file_paths : str or list</span>
+<span class="sd">        Path to file that contains the reactor geometry.</span>
+<span class="sd">        List of `str` if reactivity control by</span>
+<span class="sd">        switching geometry is `On` or just `str` otherwise.</span>
+<span class="sd">    zaid_convention : str</span>
+<span class="sd">        ZAID naming convention for nuclide codes.</span>
+
+<span class="sd">        &#39;serpent&#39; - The third digit in ZA for nuclides in isomeric states</span>
+<span class="sd">        is 3 (e.g. 47310 for for Ag-110m).</span>
+
+<span class="sd">        &#39;mcnp&#39; - ZA = Z*1000 + A + (300 + 100*m). where m is the mth</span>
+<span class="sd">        isomeric state (e.g. 47510 for Ag-110m)</span>
+
+<span class="sd">        &#39;nndc&#39; - Identical to &#39;mcnp&#39;, except Am242m1 is 95242 and Am242</span>
+<span class="sd">        is 95642</span>
+
 <span class="sd">    Attributes</span>
-<span class="sd">    -----------</span>
+<span class="sd">    ----------</span>
 <span class="sd">    neutronics_parameters : dict of str to type</span>
 <span class="sd">        Holds Serpent2 depletion step neutronics parameters. Parameter names are</span>
 <span class="sd">        keys and parameter values are values.</span>
 <span class="sd">    step_metadata : dict of str to type</span>
 <span class="sd">        Holds Serpent2 depletion step metadata. Metadata labels are keys</span>
 <span class="sd">        and metadata values are values.</span>
+<span class="sd">    depcode_metadata : dict of str to type</span>
+<span class="sd">        Holds Serpent2 simulation metadata. Metadata labels are keys</span>
+<span class="sd">        and metadata values are values.</span>
 <span class="sd">    runtime_inputfile : str</span>
 <span class="sd">        Path to Serpent2 input file used to run depletion step. Contains neutron</span>
 <span class="sd">        settings and non-burnable materials.</span>
@@ -114,7 +145,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
 
 <span class="sd">    &quot;&quot;&quot;</span>
 
-<div class="viewcode-block" id="SerpentDepcode.__init__"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
                  <span class="n">output_path</span><span class="p">,</span>
                  <span class="n">exec_path</span><span class="p">,</span>
                  <span class="n">template_input_file_path</span><span class="p">,</span>
@@ -122,30 +153,6 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
                  <span class="n">zaid_convention</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Initialize a SerpentDepcode object.</span>
 
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           output_path : str</span>
-<span class="sd">               Path to results storage directory.</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to Serpent2 executable.</span>
-<span class="sd">           template_input_file_path : str</span>
-<span class="sd">               Path to user input file for Serpent2</span>
-<span class="sd">           geo_file_paths : str or list</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">           zaid_convention : str</span>
-<span class="sd">               ZAID naming convention for nuclide codes.</span>
-
-<span class="sd">               &#39;serpent&#39; - The third digit in ZA for nuclides in isomeric states</span>
-<span class="sd">               is 3 (e.g. 47310 for for Ag-110m).</span>
-
-<span class="sd">               &#39;mcnp&#39; - ZA = Z*1000 + A + (300 + 100*m). where m is the mth</span>
-<span class="sd">               isomeric state (e.g. 47510 for Ag-110m)</span>
-
-<span class="sd">               &#39;nndc&#39; - Identical to &#39;mcnp&#39;, except Am242m1 is 95242 and Am242</span>
-<span class="sd">               is 95642</span>
-
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="s2">&quot;serpent&quot;</span><span class="p">,</span>
                          <span class="n">output_path</span><span class="p">,</span>
@@ -155,9 +162,13 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">=</span> \
                          <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;runtime_input.serpent&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span> <span class="o">=</span> <span class="nb">str</span><span class="p">((</span><span class="n">output_path</span> <span class="o">/</span> <span class="s1">&#39;runtime_mat.ini&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">resolve</span><span class="p">())</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">=</span> <span class="n">zaid_convention</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">=</span> <span class="n">zaid_convention</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_OUTPUTFILE_NAMES</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;runtime_input.serpent_res.m&#39;</span><span class="p">,</span> <span class="s1">&#39;runtime_input.serpent_dep.m&#39;</span><span class="p">,</span>
+                                 <span class="s1">&#39;runtime_input.serpent.seed&#39;</span><span class="p">,</span> <span class="s1">&#39;runtime_input.serpent.out&#39;</span><span class="p">,</span>
+                                 <span class="s1">&#39;runtime_input.serpent.dep&#39;</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_INPUTFILE_NAMES</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;runtime_mat.ini&#39;</span><span class="p">,</span> <span class="s1">&#39;runtime_input.serpent&#39;</span><span class="p">)</span>
 
-<div class="viewcode-block" id="SerpentDepcode.get_neutron_settings"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings">[docs]</a>    <span class="k">def</span> <span class="nf">get_neutron_settings</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_lines</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.get_neutron_settings"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.get_neutron_settings">[docs]</a>    <span class="k">def</span> <span class="nf">get_neutron_settings</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_lines</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Get neutron settings (no. of neutrons per cycle, no. of active and</span>
 <span class="sd">        inactive cycles) from the Serpent2 input file</span>
 
@@ -182,7 +193,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">active_cycles</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">inactive_cycles</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.create_runtime_matfile"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile">[docs]</a>    <span class="k">def</span> <span class="nf">create_runtime_matfile</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_lines</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.create_runtime_matfile"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.create_runtime_matfile">[docs]</a>    <span class="k">def</span> <span class="nf">create_runtime_matfile</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_lines</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Creates the runtime material file tracking burnable materials</span>
 <span class="sd">        and inserts the path to this file in the Serpent2 runtime input file</span>
 
@@ -247,7 +258,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="n">mat_data</span> <span class="o">=</span> <span class="nb">zip</span><span class="p">(</span><span class="n">mat_cards</span><span class="p">,</span> <span class="n">card_volume_idx</span><span class="p">)</span><span class="c1">#, mat_extensions)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_burnable_material_card_data</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">mat_names</span><span class="p">,</span> <span class="n">mat_data</span><span class="p">))</span>
 
-<div class="viewcode-block" id="SerpentDepcode.convert_nuclide_code_to_name"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name">[docs]</a>    <span class="k">def</span> <span class="nf">convert_nuclide_code_to_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.nuclide_code_to_name"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.nuclide_code_to_name">[docs]</a>    <span class="k">def</span> <span class="nf">nuclide_code_to_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Converts Serpent2 nuclide code to symbolic nuclide name.</span>
 <span class="sd">        If nuclide is in a metastable state, the nuclide name is concatenated</span>
 <span class="sd">        with the letter `m` and the state index.</span>
@@ -260,49 +271,75 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
 <span class="sd">        Returns</span>
 <span class="sd">        -------</span>
 <span class="sd">        nuc_name : str</span>
-<span class="sd">            Symbolic nuclide name (`Am242m1`).</span>
+<span class="sd">            Symbolic nuclide name (`Am242_m1`).</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
 
         <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">):</span>
             <span class="n">nuc_code</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
-                <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzzaaa_to_id</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="ow">in</span> <span class="p">(</span><span class="s1">&#39;mcnp&#39;</span><span class="p">,</span> <span class="s1">&#39;nndc&#39;</span><span class="p">):</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;mcnp&#39;</span> <span class="ow">and</span> <span class="n">nuc_code</span> <span class="ow">in</span> <span class="p">(</span><span class="mi">95242</span><span class="p">,</span> <span class="mi">95642</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">nuc_code</span> <span class="o">==</span> <span class="mi">95242</span><span class="p">:</span>
-                        <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95642</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95242</span>
-                <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">mcnp_to_id</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-
-            <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                        <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                <span class="k">elif</span> <span class="n">aa</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="s1">&#39;nat&#39;</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="ow">in</span> <span class="p">(</span><span class="s1">&#39;mcnp&#39;</span><span class="p">,</span> <span class="s1">&#39;nndc&#39;</span><span class="p">):</span>
-                <span class="n">mm</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">snum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">mm</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;m</span><span class="si">{</span><span class="n">mm</span><span class="si">}</span><span class="s1">&#39;</span>
-
-            <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zz_name</span><span class="p">[</span><span class="n">zz</span><span class="p">]</span> <span class="o">+</span> <span class="n">aa_str</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;nndc&#39;</span> <span class="ow">and</span> <span class="n">nuc_code</span> <span class="ow">in</span> <span class="p">(</span><span class="mi">95242</span><span class="p">,</span> <span class="mi">95642</span><span class="p">):</span>
+               <span class="k">if</span> <span class="n">nuc_code</span> <span class="o">==</span> <span class="mi">95242</span><span class="p">:</span>
+                  <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95642</span>
+               <span class="k">else</span><span class="p">:</span>
+                  <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95242</span>
+            <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_nuclide_code_to_zam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="n">meta_flag</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">snum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">meta_flag</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;m&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">meta_flag</span><span class="p">)</span>
+            <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_decay_code_to_zam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
+
+        <span class="n">nucname</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">gnds_name</span><span class="p">(</span><span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span><span class="o">=</span><span class="n">m</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">m</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">nucname</span> <span class="o">=</span> <span class="n">nucname</span><span class="p">[:</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;_m</span><span class="si">{</span><span class="n">m</span><span class="si">}</span><span class="s1">&#39;</span>
+        <span class="k">return</span> <span class="n">nucname</span></div>
+
+    <span class="k">def</span> <span class="nf">_decay_code_to_zam</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
+        <span class="n">m</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+        <span class="n">nuc_code</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+        <span class="n">Z</span> <span class="o">=</span> <span class="n">floor</span><span class="p">(</span><span class="n">nuc_code</span> <span class="o">*</span> <span class="mf">1e-3</span><span class="p">)</span>
+        <span class="n">a</span> <span class="o">=</span> <span class="n">nuc_code</span> <span class="o">%</span> <span class="mi">1000</span>
+        <span class="k">return</span> <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span>
+
+    <span class="k">def</span> <span class="nf">_nuclide_code_to_zam</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
+        <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">):</span>
+            <span class="n">nuc_code</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+
+        <span class="n">Z</span> <span class="o">=</span> <span class="n">floor</span><span class="p">(</span><span class="n">nuc_code</span> <span class="o">*</span> <span class="mf">1e-3</span><span class="p">)</span>
+        <span class="n">a</span> <span class="o">=</span> <span class="n">nuc_code</span> <span class="o">%</span> <span class="mi">1000</span>
+        <span class="n">m</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
+            <span class="k">if</span> <span class="n">a</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
+                <span class="n">m</span> <span class="o">=</span> <span class="mi">1</span>
+                <span class="k">if</span> <span class="n">Z</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
+                    <span class="n">a</span> <span class="o">=</span> <span class="n">a</span> <span class="o">-</span> <span class="mi">100</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">a</span> <span class="o">=</span> <span class="n">a</span> <span class="o">-</span> <span class="mi">200</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Assumes only m=1 metastable states</span>
+            <span class="k">if</span> <span class="n">a</span> <span class="o">&gt;</span> <span class="mi">400</span><span class="p">:</span>
+                <span class="n">a</span> <span class="o">-=</span> <span class="mi">400</span>
+                <span class="n">m</span> <span class="o">=</span> <span class="mi">1</span>
+        <span class="k">return</span> <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span>
+
+<div class="viewcode-block" id="SerpentDepcode.name_to_nuclide_code"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.name_to_nuclide_code">[docs]</a>    <span class="k">def</span> <span class="nf">name_to_nuclide_code</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nucname</span><span class="p">):</span>
+        <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span> <span class="o">=</span> <span class="n">openmc</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">zam</span><span class="p">(</span><span class="n">nucname</span><span class="p">)</span>
+        <span class="n">nuc_code</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_zam_to_nuclide_code</span><span class="p">(</span><span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">nuc_code</span></div>
+
+    <span class="k">def</span> <span class="nf">_zam_to_nuclide_code</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">Z</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">m</span><span class="p">):</span>
+        <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">Z</span> <span class="o">*</span> <span class="mi">1000</span>
+        <span class="k">if</span> <span class="n">m</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
+                <span class="n">nuc_code</span> <span class="o">+=</span> <span class="nb">int</span><span class="p">(((</span><span class="n">a</span> <span class="o">/</span> <span class="mi">100</span><span class="p">)</span> <span class="o">-</span> <span class="mi">3</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span><span class="p">)</span>
             <span class="k">else</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
+                <span class="n">nuc_code</span> <span class="o">+=</span> <span class="mi">300</span> <span class="o">+</span> <span class="mi">100</span> <span class="o">*</span> <span class="n">m</span>
+                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;nndc&#39;</span> <span class="ow">and</span> <span class="n">nuc_code</span> <span class="ow">in</span> <span class="p">(</span><span class="mi">95242</span><span class="p">,</span> <span class="mi">95642</span><span class="p">):</span>
+                   <span class="k">if</span> <span class="n">nuc_code</span> <span class="o">==</span> <span class="mi">95242</span><span class="p">:</span>
+                      <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95642</span>
+                   <span class="k">else</span><span class="p">:</span>
+                      <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95242</span>
+        <span class="k">return</span> <span class="n">nuc_code</span>
 
-        <span class="k">return</span> <span class="n">nuc_name</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.map_nuclide_code_zam_to_serpent"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent">[docs]</a>    <span class="k">def</span> <span class="nf">map_nuclide_code_zam_to_serpent</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.map_nuclide_name_to_serpent_name"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.map_nuclide_name_to_serpent_name">[docs]</a>    <span class="k">def</span> <span class="nf">map_nuclide_name_to_serpent_name</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Creates a dictionary mapping nuclide codes in `zzaaam` format</span>
 <span class="sd">        to Serpent2&#39;s nuclide code format.</span>
 
@@ -335,29 +372,38 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
                 <span class="k">if</span> <span class="s1">&#39;c  TRA&#39;</span> <span class="ow">in</span> <span class="n">line</span> <span class="ow">or</span> <span class="s1">&#39;c  DEC&#39;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
                     <span class="n">line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
                     <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-                    <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">):</span>
-                        <span class="n">nuc_code</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-                        <span class="c1"># In MCNP format the ground state of Am-242 is 95242,</span>
-                        <span class="c1"># but PyNE seems to disagree</span>
-                        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
-                            <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzzaaa_to_id</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                            <span class="n">zzaaam</span> <span class="o">=</span> \
-                                <span class="bp">self</span><span class="o">.</span><span class="n">convert_nuclide_code_to_zam</span><span class="p">(</span><span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">))</span>
-                        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;nndc&#39;</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;mcnp&#39;</span><span class="p">:</span>
-                            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">zaid_convention</span> <span class="o">==</span> <span class="s1">&#39;mcnp&#39;</span> <span class="ow">and</span> <span class="n">nuc_code</span> <span class="ow">in</span> <span class="p">(</span><span class="mi">95242</span><span class="p">,</span> <span class="mi">95642</span><span class="p">):</span>
-                                <span class="k">if</span> <span class="n">nuc_code</span> <span class="o">==</span> <span class="mi">95242</span><span class="p">:</span>
-                                    <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95642</span>
-                                <span class="k">else</span><span class="p">:</span>
-                                    <span class="n">nuc_code</span> <span class="o">=</span> <span class="mi">95242</span>
-                            <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">mcnp_to_id</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                            <span class="n">zzaaam</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">zzaaam</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-
-                    <span class="n">nuc_code_map</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">zzaaam</span><span class="p">:</span> <span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">]})</span>
+                    <span class="n">nuc_name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">nuclide_code_to_name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
+                    <span class="n">nuc_code_map</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">nuc_name</span><span class="p">:</span> <span class="n">nuc_code</span><span class="p">})</span>
         <span class="k">return</span> <span class="n">nuc_code_map</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.insert_path_to_geometry"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">insert_path_to_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">lines</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.resolve_include_paths"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.resolve_include_paths">[docs]</a>    <span class="k">def</span> <span class="nf">resolve_include_paths</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">lines</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Resolves relative paths in runtime input file into</span>
+<span class="sd">        absolute paths.</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        lines : list of str</span>
+<span class="sd">            Serpent2 runtime input file.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">            lines : list of str</span>
+<span class="sd">                Serpent 2 runtime input file containing modified `include` paths</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="k">for</span> <span class="n">idx</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">lines</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;include&#39;</span><span class="p">):</span>
+                <span class="n">split_line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="p">)</span>
+                <span class="n">include_path</span> <span class="o">=</span> <span class="n">split_line</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
+                <span class="n">include_path</span> <span class="o">=</span> \
+                    <span class="n">Path</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">)</span><span class="o">.</span><span class="n">parents</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">include_path</span>
+                <span class="n">include_path</span> <span class="o">=</span> <span class="n">include_path</span><span class="o">.</span><span class="n">resolve</span><span class="p">()</span>
+                <span class="n">line</span> <span class="o">=</span> <span class="sa">f</span><span class="s1">&#39;include </span><span class="se">\&quot;</span><span class="si">{</span><span class="nb">str</span><span class="p">(</span><span class="n">include_path</span><span class="p">)</span><span class="si">}</span><span class="se">\&quot;\n</span><span class="s1">&#39;</span>
+                <span class="n">lines</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">line</span>
+
+        <span class="k">return</span> <span class="n">lines</span></div>
+
+<div class="viewcode-block" id="SerpentDepcode.insert_path_to_geometry"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.insert_path_to_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">insert_path_to_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">lines</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Inserts ``include &lt;first_geometry_file&gt;`` line on the 6th line of</span>
 <span class="sd">        Serpent2 input file.</span>
 
@@ -376,7 +422,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
                              <span class="s1">&#39;include </span><span class="se">\&quot;</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">geo_file_paths</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\&quot;\n</span><span class="s1">&#39;</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">lines</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.read_depleted_materials"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_depleted_materials">[docs]</a>    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.read_depleted_materials"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_depleted_materials">[docs]</a>    <span class="k">def</span> <span class="nf">read_depleted_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads depleted materials from Serpent2&#39;s `*_dep.m`</span>
 <span class="sd">        file and returns a dictionary containing them.</span>
 
@@ -404,94 +450,87 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">moment</span> <span class="o">=</span> <span class="mi">0</span>
 
+        <span class="n">openmc</span><span class="o">.</span><span class="n">reset_auto_ids</span><span class="p">()</span>
         <span class="n">results_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">_dep.m&#39;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">)</span>
-        <span class="n">results</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_dep</span><span class="p">(</span><span class="n">results_file</span><span class="p">,</span> <span class="n">make_mats</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">days</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="s1">&#39;DAYS&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
+        <span class="n">results</span> <span class="o">=</span> <span class="n">serpentTools</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">results_file</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">days</span> <span class="o">=</span> <span class="n">results</span><span class="o">.</span><span class="n">days</span><span class="p">[</span><span class="n">moment</span><span class="p">]</span>
 
         <span class="c1"># Get material names</span>
         <span class="n">mat_names</span> <span class="o">=</span> <span class="p">[]</span>
         <span class="n">depleted_materials</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">results</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">name_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s1">&#39;MAT_(.+?)_VOLUME&#39;</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name_match</span><span class="p">:</span>
-                <span class="n">mat_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name_match</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
-        <span class="n">zai</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">results</span><span class="p">[</span><span class="s1">&#39;ZAI&#39;</span><span class="p">][:</span><span class="o">-</span><span class="mi">2</span><span class="p">]))</span>  <span class="c1"># zzaaam codes of isotopes</span>
-
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mat_names</span><span class="p">:</span>
-            <span class="n">volume</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;MAT_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s1">_VOLUME&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-            <span class="n">nucvec</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">zai</span><span class="p">,</span> <span class="n">results</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;MAT_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s1">_MDENS&#39;</span><span class="p">][:,</span> <span class="n">moment</span><span class="p">]))</span>
-            <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-            <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;MAT_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s1">_MDENS&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="n">moment</span><span class="p">]</span>
-            <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">*</span> <span class="n">volume</span>
-            <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">volume</span>
-            <span class="n">depleted_materials</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">results</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;MAT_</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s1">_BURNUP&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
+        <span class="k">for</span> <span class="n">material_name</span><span class="p">,</span> <span class="n">material</span> <span class="ow">in</span> <span class="n">results</span><span class="o">.</span><span class="n">materials</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">material_name</span> <span class="o">!=</span> <span class="s1">&#39;total&#39;</span><span class="p">:</span>
+                <span class="n">nuclide_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">nuclide_code_to_name</span><span class="p">,</span> <span class="n">material</span><span class="o">.</span><span class="n">zai</span><span class="p">[:</span><span class="o">-</span><span class="mi">2</span><span class="p">]))</span>
+                <span class="n">comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nuclide_names</span><span class="p">,</span> <span class="n">material</span><span class="o">.</span><span class="n">mdens</span><span class="p">[:</span><span class="o">-</span><span class="mi">2</span><span class="p">,</span> <span class="n">moment</span><span class="p">]))</span>
+                <span class="n">volume</span> <span class="o">=</span> <span class="n">material</span><span class="o">.</span><span class="n">volume</span><span class="p">[</span><span class="n">moment</span><span class="p">]</span>
+                <span class="n">density</span> <span class="o">=</span> <span class="n">material</span><span class="o">.</span><span class="n">mdens</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="n">moment</span><span class="p">]</span>
+                <span class="n">depleted_materials</span><span class="p">[</span><span class="n">material_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">comp</span><span class="o">=</span><span class="n">comp</span><span class="p">,</span>
+                                                                 <span class="n">comp_is_density</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+                                                                 <span class="n">density</span><span class="o">=</span><span class="n">density</span><span class="p">,</span>
+                                                                 <span class="n">volume</span><span class="o">=</span><span class="n">volume</span><span class="p">,</span>
+                                                                 <span class="n">burnup</span><span class="o">=</span><span class="n">results</span><span class="o">.</span><span class="n">burnup</span><span class="p">[</span><span class="n">moment</span><span class="p">])</span>
         <span class="k">return</span> <span class="n">depleted_materials</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.read_step_metadata"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_step_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.read_depcode_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_depcode_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Reads Serpent2 metadata and stores it in the</span>
+<span class="sd">        :class:`SerpentDepcode` object&#39;s :attr:`depcode_metadata` attribute.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="n">res</span> <span class="o">=</span> <span class="n">serpentTools</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
+        <span class="n">depcode_name</span><span class="p">,</span> <span class="n">depcode_ver</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_name</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_ver</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;inputFileName&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;workingDirectory&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;xsDataFilePath&#39;</span><span class="p">]</span></div>
+
+
+<div class="viewcode-block" id="SerpentDepcode.read_step_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_step_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">read_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads Serpent2 depletion step metadata and stores it in the</span>
 <span class="sd">        :class:`SerpentDepcode` object&#39;s :attr:`step_metadata` attribute.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="n">depcode_name</span><span class="p">,</span> <span class="n">depcode_ver</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;VERSION&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_name</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_ver</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TITLE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INPUT_FILE_NAME&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;WORKING_DIRECTORY&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;XS_DATA_FILE_PATH&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OMP_THREADS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MPI_TASKS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OPTIMIZATION_MODE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;RUNNING_TIME&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MEMSIZE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span></div>
-
-
-<div class="viewcode-block" id="SerpentDepcode.read_neutronics_parameters"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_neutronics_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="n">res</span> <span class="o">=</span> <span class="n">serpentTools</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;ompThreads&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;mpiTasks&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">metadata</span><span class="p">[</span><span class="s1">&#39;optimizationMode&#39;</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depletion_timestep_size&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;burnDays&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;runningTime&#39;</span><span class="p">])</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;memsize&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span></div>
+
+
+<div class="viewcode-block" id="SerpentDepcode.read_neutronics_parameters"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_neutronics_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">read_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads Serpent2 depletion step neutronics parameters and stores them</span>
 <span class="sd">        in :class:`SerpentDepcode` object&#39;s :attr:`neutronics_parameters`</span>
 <span class="sd">        attribute.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;CONVERSION_RATIO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_POWER&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">b_l</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="mf">.5</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_LAMBDA&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+        <span class="n">res</span> <span class="o">=</span> <span class="n">serpentTools</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;impKeff&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;impKeff&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_bds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;conversionRatio&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_eds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;conversionRatio&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;burnDays&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;totPower&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+        <span class="n">b_l</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="mf">.5</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;fwdAnaBetaZero&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]))</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;fwdAnaBetaZero&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;fwdAnaBetaZero&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_bds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;fwdAnaLambda&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span> <span class="o">=</span> \
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;fwdAnaLambda&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INI_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;iniFmass&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="SerpentDepcode.read_plaintext_file"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_plaintext_file">[docs]</a>    <span class="k">def</span> <span class="nf">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_path</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the content of a plaintext file for use by other methods.</span>
+            <span class="n">res</span><span class="o">.</span><span class="n">resdata</span><span class="p">[</span><span class="s1">&#39;totFmass&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span></div>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        file_path : str</span>
-<span class="sd">            Path to file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        file_lines : list of str</span>
-<span class="sd">            File lines.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">file_lines</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
-            <span class="n">file_lines</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">file_lines</span></div>
-
-<div class="viewcode-block" id="SerpentDepcode.set_power_load"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.set_power_load">[docs]</a>    <span class="k">def</span> <span class="nf">set_power_load</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+<div class="viewcode-block" id="SerpentDepcode.set_power_load"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.set_power_load">[docs]</a>    <span class="k">def</span> <span class="nf">set_power_load</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
                        <span class="n">file_lines</span><span class="p">,</span>
                        <span class="n">reactor</span><span class="p">,</span>
                        <span class="n">step_idx</span><span class="p">):</span>
@@ -536,7 +575,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
                           <span class="p">(</span><span class="n">current_power</span><span class="p">,</span> <span class="n">step_type</span><span class="p">,</span> <span class="n">step_length</span><span class="p">))</span>
         <span class="k">return</span> <span class="n">file_lines</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.run_depletion_step"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.run_depletion_step">[docs]</a>    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">threads</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.run_depletion_step"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.run_depletion_step">[docs]</a>    <span class="k">def</span> <span class="nf">run_depletion_step</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mpi_args</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">threads</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Runs a depletion step in Serpent2 as a subprocess.</span>
 
 <span class="sd">i       Parameters</span>
@@ -559,49 +598,9 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
 
         <span class="n">args</span> <span class="o">=</span> <span class="n">args</span> <span class="o">+</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">]</span>
 
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">subprocess</span><span class="o">.</span><span class="n">run</span><span class="p">(</span>
-                <span class="n">args</span><span class="p">,</span>
-                <span class="n">cwd</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span>
-                <span class="n">capture_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Finished Serpent2 Run&#39;</span><span class="p">)</span>
-        <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">error</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">error</span><span class="o">.</span><span class="n">output</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span>
-            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> RUN FAILED</span><span class="se">\n</span><span class="s1"> see error message above&#39;</span>
-                               <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span></div>
-
-<div class="viewcode-block" id="SerpentDepcode.convert_nuclide_code_to_zam"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam">[docs]</a>    <span class="k">def</span> <span class="nf">convert_nuclide_code_to_zam</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Converts nuclide code from Serpent2 format to zam format.</span>
-<span class="sd">        Checks Serpent2-specific meta stable-flag for zzaaam. For instance,</span>
-<span class="sd">        47310 instead of 471101 for `Ag-110m1`. Metastable isotopes represented</span>
-<span class="sd">        with `aaa` started with ``3``.</span>
+        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="n">run_depletion_step</span><span class="p">(</span><span class="n">mpi_args</span><span class="p">,</span> <span class="n">args</span><span class="p">)</span></div>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        nuc_code : int</span>
-<span class="sd">            Nuclide code in Serpent2 format (`47310`).</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuc_zzaam : int</span>
-<span class="sd">            Nuclide code in in `zzaaam` form (`471101`).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">zz</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa_new</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;1&#39;</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="n">nuc_code</span>
-        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">zzaaam</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="SerpentDepcode.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.switch_to_next_geometry"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Inserts line with path to next Serpent geometry file at the</span>
 <span class="sd">        beginning of the Serpent iteration input file.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
@@ -625,7 +624,7 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
             <span class="n">f</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">new_lines</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.write_runtime_input"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.write_runtime_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.write_runtime_input"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.write_runtime_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_runtime_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Write Serpent2 runtime input file for running depletion step</span>
 
 <span class="sd">        Parameters</span>
@@ -642,17 +641,19 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="n">dep_step</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">restart</span><span class="p">:</span>
             <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">)</span>
+            <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">resolve_include_paths</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
             <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">insert_path_to_geometry</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
             <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">create_runtime_matfile</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">get_neutron_settings</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">)</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">get_neutron_settings</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
         <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">set_power_load</span><span class="p">(</span><span class="n">lines</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">)</span>
 
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">out_file</span><span class="p">:</span>
             <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="SerpentDepcode.update_depletable_materials"><a class="viewcode-back" href="../../src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.update_depletable_materials">[docs]</a>    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
+<div class="viewcode-block" id="SerpentDepcode.update_depletable_materials"><a class="viewcode-back" href="../../api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.update_depletable_materials">[docs]</a>    <span class="k">def</span> <span class="nf">update_depletable_materials</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Update material file with reprocessed material compositions.</span>
 
 <span class="sd">        Parameters</span>
@@ -672,22 +673,21 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
             <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%%</span><span class="s1"> Material compositions (after </span><span class="si">%f</span><span class="s1"> days)</span><span class="se">\n\n</span><span class="s1">&#39;</span>
                     <span class="o">%</span> <span class="n">dep_end_time</span><span class="p">)</span>
-            <span class="n">nuc_code_map</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">map_nuclide_code_zam_to_serpent</span><span class="p">()</span>
+            <span class="n">nuc_code_map</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">map_nuclide_name_to_serpent_name</span><span class="p">()</span>
             <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;_burnable_material_card_data&#39;</span><span class="p">)):</span>
                 <span class="n">lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_input_file_path</span><span class="p">)</span>
-                <span class="n">_</span><span class="p">,</span> <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_burnable_materials_file</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
+                <span class="n">_</span><span class="p">,</span> <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_get_burnable_materials_file</span><span class="p">(</span><span class="n">lines</span><span class="p">)</span>
                 <span class="n">file_lines</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">abs_src_matfile</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">_get_burnable_material_card_data</span><span class="p">(</span><span class="n">file_lines</span><span class="p">)</span>
             <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">mat</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
                 <span class="n">mat_card</span><span class="p">,</span> <span class="n">card_volume_idx</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_burnable_material_card_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
                 <span class="n">mat_card</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="o">-</span><span class="n">mat</span><span class="o">.</span><span class="n">density</span><span class="p">)</span>
-                <span class="n">mat_card</span><span class="p">[</span><span class="n">card_volume_idx</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="si">%7.5E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">mat</span><span class="o">.</span><span class="n">vol</span>
+                <span class="n">mat_card</span><span class="p">[</span><span class="n">card_volume_idx</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="si">%7.5E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">mat</span><span class="o">.</span><span class="n">volume</span>
                 <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">mat_card</span><span class="p">))</span>
                 <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">mass_fraction</span> <span class="ow">in</span> <span class="n">mat</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                    <span class="n">zam_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
+                <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">mass_fraction</span> <span class="ow">in</span> <span class="n">mat</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
                     <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;           </span><span class="si">%9s</span><span class="s1">  </span><span class="si">%7.14E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                            <span class="p">(</span><span class="n">nuc_code_map</span><span class="p">[</span><span class="n">zam_code</span><span class="p">],</span>
+                            <span class="p">(</span><span class="n">nuc_code_map</span><span class="p">[</span><span class="n">nuc</span><span class="p">],</span>
                              <span class="o">-</span><span class="n">mass_fraction</span><span class="p">))</span></div></div>
 </pre></div>
 
@@ -719,11 +719,6 @@ <h1>Source code for saltproc.serpent_depcode</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="serpent_depcode.html">master</a></dd>
diff --git a/master/_modules/saltproc/simulation.html b/master/_modules/saltproc/simulation.html
index 809406ca7..623108a6d 100644
--- a/master/_modules/saltproc/simulation.html
+++ b/master/_modules/saltproc/simulation.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -81,7 +83,7 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
 
 
-<div class="viewcode-block" id="Simulation"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation">[docs]</a><span class="k">class</span> <span class="nc">Simulation</span><span class="p">():</span>
+<div class="viewcode-block" id="Simulation"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation">[docs]</a><span class="k">class</span> <span class="nc">Simulation</span><span class="p">():</span>
     <span class="sd">&quot;&quot;&quot;Class for handling simulation information. Contains information</span>
 <span class="sd">    for running simulation wiht parallelism. Also contains the simulation</span>
 <span class="sd">    name, a `Depcode` object, and the filename for the simulation database.</span>
@@ -89,9 +91,33 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 <span class="sd">    a database, predict reactor criticality at next depletion step, and</span>
 <span class="sd">    switch simulation geometry.</span>
 
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    sim_name : str</span>
+<span class="sd">        Name to identify the simulation. May contain information such as</span>
+<span class="sd">        the number of a reference case, a paper name, or some other</span>
+<span class="sd">        specific information identify the simulation.</span>
+<span class="sd">    sim_depcode : `Depcode` object</span>
+<span class="sd">        An instance of one of the `Depcode` child classes</span>
+<span class="sd">    db_path : str</span>
+<span class="sd">        Path of HDF5 database that stores simulation information and</span>
+<span class="sd">        data.</span>
+<span class="sd">    restart_flag : bool</span>
+<span class="sd">        This value determines our initial condition. If `True`, then</span>
+<span class="sd">        then we run the simulation starting from the inital material</span>
+<span class="sd">        composition in the material input file inside our `depcode`</span>
+<span class="sd">        object. If `False`, then we runthe simulation starting from</span>
+<span class="sd">        the final material composition resulting within the `.h5`</span>
+<span class="sd">        database.</span>
+<span class="sd">    adjust_geo : bool</span>
+<span class="sd">        This value determines if we switch reactor geometry when keff</span>
+<span class="sd">        drops below 1.0</span>
+<span class="sd">    compression_params : Pytables filter object</span>
+<span class="sd">        Compression parameters for HDF5 database.</span>
+
 <span class="sd">    &quot;&quot;&quot;</span>
 
-<div class="viewcode-block" id="Simulation.__init__"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
             <span class="bp">self</span><span class="p">,</span>
             <span class="n">sim_name</span><span class="o">=</span><span class="s2">&quot;default&quot;</span><span class="p">,</span>
             <span class="n">sim_depcode</span><span class="o">=</span><span class="s2">&quot;depcode&quot;</span><span class="p">,</span>
@@ -104,30 +130,6 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
     <span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Initializes the Simulation object.</span>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sim_name : str</span>
-<span class="sd">            Name to identify the simulation. May contain information such as</span>
-<span class="sd">            the number of a reference case, a paper name, or some other</span>
-<span class="sd">            specific information identify the simulation.</span>
-<span class="sd">        sim_depcode : `Depcode` object</span>
-<span class="sd">            An instance of one of the `Depcode` child classes</span>
-<span class="sd">        db_path : str</span>
-<span class="sd">            Path of HDF5 database that stores simulation information and</span>
-<span class="sd">            data.</span>
-<span class="sd">        restart_flag : bool</span>
-<span class="sd">            This value determines our initial condition. If `True`, then</span>
-<span class="sd">            then we run the simulation starting from the inital material</span>
-<span class="sd">            composition in the material input file inside our `depcode`</span>
-<span class="sd">            object. If `False`, then we runthe simulation starting from</span>
-<span class="sd">            the final material composition resulting within the `.h5`</span>
-<span class="sd">            database.</span>
-<span class="sd">        adjust_geo : bool</span>
-<span class="sd">            This value determines if we switch reactor geometry when keff</span>
-<span class="sd">            drops below 1.0</span>
-<span class="sd">        compression_params : Pytables filter object</span>
-<span class="sd">            Compression parameters for HDF5 database.</span>
-
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># initialize all object attributes</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">sim_name</span> <span class="o">=</span> <span class="n">sim_name</span>
@@ -135,9 +137,11 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">restart_flag</span> <span class="o">=</span> <span class="n">restart_flag</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">adjust_geo</span> <span class="o">=</span> <span class="n">adjust_geo</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span> <span class="o">=</span> <span class="n">compression_params</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span> <span class="o">=</span> <span class="n">compression_params</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">nuclide_indices_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([(</span><span class="s1">&#39;nuclide&#39;</span><span class="p">,</span> <span class="s1">&#39;S9&#39;</span><span class="p">),</span>
+                                          <span class="p">(</span><span class="s1">&#39;index&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">)])</span>
 
-<div class="viewcode-block" id="Simulation.check_restart"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.check_restart">[docs]</a>    <span class="k">def</span> <span class="nf">check_restart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Simulation.check_restart"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.check_restart">[docs]</a>    <span class="k">def</span> <span class="nf">check_restart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;If the user set `restart_flag`</span>
 <span class="sd">        for `False` clean out iteration files and database from previous run.</span>
 
@@ -146,17 +150,36 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 <span class="sd">        restart_flag : bool</span>
 <span class="sd">            Is the current simulation restarted?</span>
 
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        failed_step : int</span>
+<span class="sd">            The depletion step that the simulation failed on.</span>
+
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">restart_flag</span><span class="p">:</span>
+            <span class="n">failed_step</span> <span class="o">=</span> <span class="mi">0</span>
             <span class="k">try</span><span class="p">:</span>
                 <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">)</span>
                 <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">runtime_matfile</span><span class="p">)</span>
-                <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">)</span>
+                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+                    <span class="k">for</span>  <span class="n">value</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="o">.</span><span class="n">values</span><span class="p">():</span>
+                        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">runtime_inputfile</span><span class="p">)</span>
                 <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Previous run output files were deleted.&quot;</span><span class="p">)</span>
             <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
-                <span class="k">pass</span></div>
+                <span class="k">pass</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
+                <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+            <span class="n">failed_step</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">simulation_parameters</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">))</span>
+            <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+        <span class="k">return</span> <span class="n">failed_step</span></div>
 
-<div class="viewcode-block" id="Simulation.store_after_repr"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">[docs]</a>    <span class="k">def</span> <span class="nf">store_after_repr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">after_mats</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">):</span>
+
+
+<div class="viewcode-block" id="Simulation.store_after_repr"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.store_after_repr">[docs]</a>    <span class="k">def</span> <span class="nf">store_after_repr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">after_mats</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Add data for waste streams [grams per depletion step] of each</span>
 <span class="sd">        process to the HDF5 database after reprocessing.</span>
 
@@ -177,58 +200,202 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 <span class="sd">            Current depletion time step.</span>
 
 <span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">streams_gr</span> <span class="o">=</span> <span class="s1">&#39;in_out_streams&#39;</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
-            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
-            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">mn</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-            <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">mn</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">):</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span>
-                    <span class="n">mat_node</span><span class="p">,</span>
-                    <span class="n">streams_gr</span><span class="p">,</span>
-                    <span class="s1">&#39;Waste Material streams data for each process&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">proc</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-                <span class="c1"># proc_node = db.create_group(waste_group, proc)</span>
-                <span class="c1"># iso_idx[proc] = OrderedDict()</span>
-                <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-                <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="c1"># Read isotopes from Materialflow</span>
-                <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                    <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                    <span class="n">iso_idx</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">convert_nuclide_code_to_name</span><span class="p">(</span><span class="n">nuc</span><span class="p">)]</span> <span class="o">=</span> <span class="n">coun</span>
-                    <span class="c1"># Convert wt% to absolute [user units]</span>
-                    <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                    <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
-                <span class="c1"># Try to open EArray and table and if not exist - create</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
-                        <span class="n">waste_group</span><span class="p">,</span>
-                        <span class="n">proc</span><span class="p">,</span>
-                        <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                        <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">)),</span>
-                        <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">proc</span><span class="p">)</span>
-                    <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
-                <span class="k">del</span> <span class="n">iso_wt_frac</span>
-                <span class="k">del</span> <span class="n">iso_idx</span>
+        <span class="k">if</span> <span class="n">waste_dict</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">streams_description</span> <span class="o">=</span> <span class="s1">&#39;in_out_streams&#39;</span>
+            <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
+                <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
+                <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">material_name</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
+                <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">material_name</span><span class="p">)</span>
+                <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_description</span><span class="p">):</span>
+                    <span class="n">waste_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span>
+                        <span class="n">mat_node</span><span class="p">,</span>
+                        <span class="n">streams_description</span><span class="p">,</span>
+                        <span class="s1">&#39;Waste stream compositions for each process&#39;</span><span class="p">)</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">waste_group</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_description</span><span class="p">)</span>
+                <span class="k">for</span> <span class="n">proc</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">material_name</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">):</span>
+                        <span class="n">proc_node</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">)</span>
+                    <span class="k">else</span><span class="p">:</span>
+                        <span class="n">proc_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">)</span>
+                    <span class="n">nuclide_indices</span> <span class="o">=</span> <span class="p">[]</span>
+                    <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
+                    <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
+                    <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">waste_dict</span><span class="p">[</span><span class="n">material_name</span><span class="p">][</span><span class="n">proc</span><span class="p">],</span> <span class="s1">&#39;comp&#39;</span><span class="p">):</span>
+                        <span class="c1"># Read isotopes from Materialflow</span>
+                        <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">material_name</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+                            <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
+                            <span class="n">nuclide_indices</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">nuc</span><span class="p">,</span> <span class="n">coun</span><span class="p">))</span>
+                            <span class="c1"># Convert wt% to absolute [user units]</span>
+                            <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">material_name</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
+                            <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
+                        <span class="c1"># Try to open EArray and table and if not exist - create</span>
+                        <span class="n">nuclide_indices_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">nuclide_indices</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">nuclide_indices_dtype</span><span class="p">)</span>
+                        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">proc_node</span><span class="p">,</span> <span class="s1">&#39;comp&#39;</span><span class="p">):</span>
+                            <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">proc_node</span><span class="p">,</span> <span class="s1">&#39;comp&#39;</span><span class="p">)</span>
+                        <span class="k">else</span><span class="p">:</span>
+                            <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
+                                <span class="n">proc_node</span><span class="p">,</span>
+                                <span class="s1">&#39;comp&#39;</span><span class="p">,</span>
+                                <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
+                                <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">nuclide_indices_array</span><span class="p">)),</span>
+                                <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">proc</span><span class="p">)</span>
+                            <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
+                            <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
+                        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">proc_node</span><span class="p">,</span> <span class="s1">&#39;nuclide_map&#39;</span><span class="p">):</span>
+                            <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span><span class="n">proc_node</span><span class="p">,</span>
+                                           <span class="s1">&#39;nuclide_map&#39;</span><span class="p">,</span>
+                                            <span class="n">description</span><span class="o">=</span><span class="n">nuclide_indices_array</span><span class="p">)</span>
+
+                        <span class="n">earr</span><span class="p">,</span> <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fix_nuclide_discrepancy</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">earr</span><span class="p">,</span> <span class="n">nuclide_indices</span><span class="p">,</span> <span class="n">iso_wt_frac</span><span class="p">)</span>
+
+                        <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
+                        <span class="k">del</span> <span class="n">iso_wt_frac</span><span class="p">,</span> <span class="n">nuclide_indices</span>
+            <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
         <span class="c1"># Also save materials AFTER reprocessing and refill here</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">after_mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">after_mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span></div>
+
+    <span class="k">def</span> <span class="nf">_fix_nuclide_discrepancy</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">earr</span><span class="p">,</span> <span class="n">nuclide_indices</span><span class="p">,</span> <span class="n">iso_wt_frac</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Fix discrepancies between nuclide keys present in stored results and</span>
+<span class="sd">        nuclides keys stored in results for the current depletion step</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        db : tables.File</span>
+<span class="sd">            The SaltProc results database</span>
+<span class="sd">        earr : tables.EArray</span>
+<span class="sd">            Array storing nuclide material mass compositions from previously</span>
+<span class="sd">            completed depletion steps</span>
+<span class="sd">        nuclide_indices : OrderedDict</span>
+<span class="sd">            Map of nuclide name to array index</span>
+<span class="sd">        iso_wt_frac : list of float</span>
+<span class="sd">            List storing nuclide material mass compositions for current</span>
+<span class="sd">            depletion step.</span>
 
-<div class="viewcode-block" id="Simulation.store_mat_data"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">[docs]</a>    <span class="k">def</span> <span class="nf">store_mat_data</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">store_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        earr : tables.EArray</span>
+<span class="sd">            Array storing nuclide material mass compositions from</span>
+<span class="sd">            previously completed depletion steps with additional</span>
+<span class="sd">            rows for nuclides introduces in iso_wt_frac</span>
+<span class="sd">        iso_wt_frac : list of float</span>
+<span class="sd">            List storing nuclide material mass compositions for current</span>
+<span class="sd">            depletion step with additional entries for nuclides not present</span>
+<span class="sd">            in the current depletion step that are stored in earr.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+
+        <span class="n">parent_node</span> <span class="o">=</span> <span class="n">earr</span><span class="o">.</span><span class="n">_v_parent</span>
+        <span class="n">base_nucs</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">bytes</span><span class="o">.</span><span class="n">decode</span><span class="p">,</span> <span class="n">parent_node</span><span class="o">.</span><span class="n">nuclide_map</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;nuclide&#39;</span><span class="p">)))</span>
+        <span class="n">iso_idx</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">nuclide_indices</span><span class="p">)</span>
+        <span class="n">step_nucs</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">iso_idx</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+        <span class="n">forward_difference</span> <span class="o">=</span> <span class="n">base_nucs</span><span class="o">.</span><span class="n">difference</span><span class="p">(</span><span class="n">step_nucs</span><span class="p">)</span>
+        <span class="n">backward_difference</span> <span class="o">=</span> <span class="n">step_nucs</span><span class="o">.</span><span class="n">difference</span><span class="p">(</span><span class="n">base_nucs</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">backward_difference</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">forward_difference</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="n">combined_nucs</span><span class="p">,</span> <span class="n">combined_map</span><span class="p">,</span> <span class="n">combined_earr</span><span class="p">,</span> <span class="n">combined_step_arr</span> <span class="o">=</span> \
+                <span class="bp">self</span><span class="o">.</span><span class="n">_add_missing_nuclides</span><span class="p">(</span><span class="n">base_nucs</span><span class="p">,</span> <span class="n">step_nucs</span><span class="p">,</span> <span class="n">earr</span><span class="p">,</span> <span class="n">iso_idx</span><span class="p">,</span> <span class="n">iso_wt_frac</span><span class="p">)</span>
+
+            <span class="n">node_name</span> <span class="o">=</span> <span class="n">earr</span><span class="o">.</span><span class="n">name</span>
+            <span class="n">node_title</span> <span class="o">=</span> <span class="n">earr</span><span class="o">.</span><span class="n">title</span>
+            <span class="n">parent_node</span> <span class="o">=</span> <span class="n">earr</span><span class="o">.</span><span class="n">_v_parent</span>
+            <span class="c1"># We have to rewrite all the data because EArrays are only extensible in one dimension</span>
+            <span class="n">db</span><span class="o">.</span><span class="n">remove_node</span><span class="p">(</span><span class="n">earr</span><span class="p">)</span>
+            <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
+                        <span class="n">parent_node</span><span class="p">,</span>
+                        <span class="n">node_name</span><span class="p">,</span>
+                        <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
+                        <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">combined_nucs</span><span class="p">)),</span>
+                        <span class="n">title</span><span class="o">=</span><span class="n">node_title</span><span class="p">)</span>
+            <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
+            <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
+            <span class="c1">#earr.attrs.iso_map = combined_map</span>
+            <span class="n">earr_len</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">combined_earr</span><span class="p">)</span>
+            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">earr_len</span><span class="p">):</span>
+                <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">combined_earr</span><span class="p">[</span><span class="n">i</span><span class="p">]]))</span>
+
+            <span class="c1"># Reform nuclide_map</span>
+            <span class="n">nuclide_indices</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">combined_map</span><span class="o">.</span><span class="n">keys</span><span class="p">(),</span> <span class="n">combined_map</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
+            <span class="n">nuclide_indices_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">nuclide_indices</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">nuclide_indices_dtype</span><span class="p">)</span>
+            <span class="n">db</span><span class="o">.</span><span class="n">remove_node</span><span class="p">(</span><span class="n">parent_node</span><span class="o">.</span><span class="n">nuclide_map</span><span class="p">)</span>
+            <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span><span class="n">parent_node</span><span class="p">,</span>
+                            <span class="s1">&#39;nuclide_map&#39;</span><span class="p">,</span>
+                            <span class="n">description</span><span class="o">=</span><span class="n">nuclide_indices_array</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">combined_step_arr</span> <span class="o">=</span> <span class="n">iso_wt_frac</span>
+
+        <span class="k">return</span> <span class="n">earr</span><span class="p">,</span> <span class="n">combined_step_arr</span>
+
+    <span class="k">def</span> <span class="nf">_add_missing_nuclides</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">base_nucs</span><span class="p">,</span> <span class="n">step_nucs</span><span class="p">,</span> <span class="n">earr</span><span class="p">,</span> <span class="n">iso_idx</span><span class="p">,</span> <span class="n">iso_wt_frac</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Add missing nuclides to stored results and the results for the</span>
+<span class="sd">        current depletion step</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        base_nucs : set</span>
+<span class="sd">            Nuclides present in previous depletion steps</span>
+<span class="sd">        step_nucs : set</span>
+<span class="sd">            Nuclides present in current depletion step</span>
+<span class="sd">        earr : tables.EArray</span>
+<span class="sd">            Array storing nuclide material mass compositions from previously</span>
+<span class="sd">            completed depletion steps</span>
+<span class="sd">        iso_idx : OrderedDict</span>
+<span class="sd">            Map of nuclide name to array index</span>
+<span class="sd">        iso_wt_frac : list of float</span>
+<span class="sd">            List storing nuclide material mass compositions for current</span>
+<span class="sd">            depletion step.</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        combined_nucs : numpy.ndarray</span>
+<span class="sd">            Nuclide-code sorted union of base_nucs and step_nucs</span>
+<span class="sd">        combined_map : OrderedDict</span>
+<span class="sd">            Map of nuclide names to array index</span>
+<span class="sd">        combined_earr : numpy.ndarray</span>
+<span class="sd">            Array storing nuclide material mass compositions from</span>
+<span class="sd">            previously completed depletion steps with additional</span>
+<span class="sd">            rows for nuclides introduces in iso_wt_frac</span>
+<span class="sd">        combined_step_arr : numpy.ndarray</span>
+<span class="sd">            Array storing nuclide material mass compositions for current</span>
+<span class="sd">            depletion step with additional entries for nuclides not present</span>
+<span class="sd">            in the current depletion step that are stored in earr.</span>
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="n">parent_node</span> <span class="o">=</span> <span class="n">earr</span><span class="o">.</span><span class="n">_v_parent</span>
+        <span class="n">_nuclides</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">bytes</span><span class="o">.</span><span class="n">decode</span><span class="p">,</span> <span class="n">parent_node</span><span class="o">.</span><span class="n">nuclide_map</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;nuclide&#39;</span><span class="p">)))</span>
+        <span class="n">_indices</span> <span class="o">=</span> <span class="n">parent_node</span><span class="o">.</span><span class="n">nuclide_map</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;index&#39;</span><span class="p">)</span>
+        <span class="n">base_nuclide_map</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">_nuclides</span><span class="p">,</span> <span class="n">_indices</span><span class="p">))</span>
+        <span class="n">combined_nucs</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">base_nucs</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="n">step_nucs</span><span class="p">))</span>
+        <span class="c1"># Sort the nucnames by ZAM</span>
+        <span class="n">nuclide_codes</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">name_to_nuclide_code</span><span class="p">,</span> <span class="n">combined_nucs</span><span class="p">))</span>
+        <span class="n">combined_nucs</span> <span class="o">=</span> <span class="p">[</span><span class="n">nucname</span> <span class="k">for</span> <span class="n">nuclide_code</span><span class="p">,</span> <span class="n">nucname</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nuclide_codes</span><span class="p">,</span><span class="n">combined_nucs</span><span class="p">))]</span>
+
+        <span class="n">combined_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">combined_nucs</span><span class="p">),</span> <span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+        <span class="n">combined_map</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">combined_nucs</span><span class="p">,</span><span class="n">combined_values</span><span class="p">))</span>
+        <span class="n">combined_earr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">earr</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">combined_map</span><span class="p">)))</span>
+        <span class="n">combined_step_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">combined_map</span><span class="p">))</span>
+        <span class="n">earr_len</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">earr</span><span class="p">)</span>
+        <span class="c1"># not efficient, but can&#39;t come up with a better way right now</span>
+        <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">combined_map</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">if</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">base_nucs</span><span class="p">:</span>
+                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">earr_len</span><span class="p">):</span>
+                    <span class="n">combined_earr</span><span class="p">[</span><span class="n">i</span><span class="p">,</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">earr</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="n">base_nuclide_map</span><span class="p">[</span><span class="n">nuc</span><span class="p">]]</span>
+                <span class="k">if</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">step_nucs</span><span class="p">:</span>
+                    <span class="n">combined_step_arr</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">iso_wt_frac</span><span class="p">[</span><span class="n">iso_idx</span><span class="p">[</span><span class="n">nuc</span><span class="p">]]</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">combined_step_arr</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+
+            <span class="k">elif</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">step_nucs</span><span class="p">:</span>
+                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">earr_len</span><span class="p">):</span>
+                    <span class="n">combined_earr</span><span class="p">[</span><span class="n">i</span><span class="p">,</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+                <span class="n">combined_step_arr</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="o">=</span> <span class="n">iso_wt_frac</span><span class="p">[</span><span class="n">iso_idx</span><span class="p">[</span><span class="n">nuc</span><span class="p">]]</span>
+        <span class="k">return</span> <span class="n">combined_nucs</span><span class="p">,</span> <span class="n">combined_map</span><span class="p">,</span> <span class="n">combined_earr</span><span class="p">,</span> <span class="n">combined_step_arr</span>
+
+<div class="viewcode-block" id="Simulation.store_mat_data"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.store_mat_data">[docs]</a>    <span class="k">def</span> <span class="nf">store_mat_data</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">store_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Initialize the HDF5/Pytables database (if it doesn&#39;t exist) or</span>
 <span class="sd">        append the following data at the current depletion step to the</span>
 <span class="sd">        database: burnable material composition, mass, density, volume,</span>
-<span class="sd">        temperature, burnup,  mass_flowrate, void_fraction.</span>
+<span class="sd">        burnup,  mass_flowrate, void_fraction.</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -250,18 +417,16 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># Determine moment in depletion step from which to store data</span>
         <span class="k">if</span> <span class="n">store_at_end</span><span class="p">:</span>
-            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="s2">&quot;after_reproc&quot;</span>
+            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;after_reproc&quot;</span><span class="p">,</span> <span class="s2">&quot;after&quot;</span><span class="p">]</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="s2">&quot;before_reproc&quot;</span>
+            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;before_reproc&quot;</span><span class="p">,</span> <span class="s2">&quot;before&quot;</span><span class="p">]</span>
 
         <span class="c1"># Moment when store compositions</span>
-        <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
         <span class="c1"># numpy array row storage data for material physical properties</span>
         <span class="n">mpar_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
             <span class="p">(</span><span class="s1">&#39;mass&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;volume&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;temperature&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;mass_flowrate&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;void_fraction&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;burnup&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
@@ -280,7 +445,7 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
                                          <span class="s1">&#39;Material data&#39;</span><span class="p">)</span>
         <span class="c1"># Iterate over all materials</span>
         <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
+            <span class="n">nuclide_indices</span> <span class="o">=</span> <span class="p">[]</span>
             <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
             <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
             <span class="c1"># Create group for each material</span>
@@ -289,24 +454,29 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
                                 <span class="n">key</span><span class="p">)</span>
             <span class="c1"># Create group for composition and parameters before reprocessing</span>
             <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">):</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
                 <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span>
-                                <span class="n">dep_step_str</span><span class="p">,</span>
-                                <span class="s1">&#39;Material data before reprocessing&#39;</span><span class="p">)</span>
-            <span class="n">comp_pfx</span> <span class="o">=</span> <span class="s1">&#39;/materials/&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">dep_step_str</span>
+                                <span class="n">dep_step_str</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span>
+                                <span class="s1">&#39;Material data </span><span class="si">{dep_step_str[1]}</span><span class="s1"> reprocessing&#39;</span><span class="p">)</span>
+            <span class="n">comp_pfx</span> <span class="o">=</span> <span class="s1">&#39;/materials/&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">dep_step_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+            <span class="c1"># Order the nucnames by ZAM</span>
+            <span class="n">nuclide_codes</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">name_to_nuclide_code</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
+            <span class="n">ordered_nucs</span> <span class="o">=</span> <span class="p">[</span><span class="n">nucname</span> <span class="k">for</span> <span class="n">nuclide_code</span><span class="p">,</span> <span class="n">nucname</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">nuclide_codes</span><span class="p">,</span><span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">()))]</span>
             <span class="c1"># Read isotopes from Materialflow for material</span>
-            <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+            <span class="k">for</span> <span class="n">nuc</span> <span class="ow">in</span> <span class="n">ordered_nucs</span><span class="p">:</span>
+                <span class="n">wt_frac</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">nuc</span><span class="p">]</span>
                 <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">convert_nuclide_code_to_name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)]</span> <span class="o">=</span> <span class="n">coun</span>
-                <span class="c1"># Convert wt% to absolute [user units]</span>
+                <span class="n">nuclide_indices</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">nuc</span><span class="p">,</span> <span class="n">coun</span><span class="p">))</span>
+                <span class="c1"># Convert wt% to total mass [g]</span>
                 <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
                 <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
+            <span class="n">nuclide_indices_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">nuclide_indices</span><span class="p">,</span>
+                                             <span class="n">dtype</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">nuclide_indices_dtype</span><span class="p">)</span>
             <span class="c1"># Store information about material properties in new array row</span>
             <span class="n">mpar_row</span> <span class="o">=</span> <span class="p">(</span>
                 <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">temp</span><span class="p">,</span>
+                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">get_density</span><span class="p">(),</span>
+                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span><span class="p">,</span>
                 <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">,</span>
                 <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">void_frac</span><span class="p">,</span>
                 <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span>
@@ -326,20 +496,26 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
                     <span class="n">comp_pfx</span><span class="p">,</span>
                     <span class="s1">&#39;comp&#39;</span><span class="p">,</span>
                     <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                    <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">])),</span>
+                    <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">nuclide_indices_array</span><span class="p">)),</span>
                     <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">key</span><span class="p">)</span>
                 <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
                 <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
                 <span class="c1"># Create table for material Parameters</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Creating &#39;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s1">&#39; lookup table.&#39;</span><span class="p">)</span>
+                <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span><span class="n">comp_pfx</span><span class="p">,</span>
+                                <span class="s1">&#39;nuclide_map&#39;</span><span class="p">,</span>
+                                <span class="n">description</span><span class="o">=</span><span class="n">nuclide_indices_array</span><span class="p">)</span>
                 <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Creating &#39;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s1">&#39; parameters table.&#39;</span><span class="p">)</span>
                 <span class="n">mpar_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
                     <span class="n">comp_pfx</span><span class="p">,</span>
                     <span class="s1">&#39;parameters&#39;</span><span class="p">,</span>
                     <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">mpar_dtype</span><span class="p">),</span>
-                    <span class="s2">&quot;Material parameters data&quot;</span><span class="p">)</span>
+                    <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Material parameters data&quot;</span><span class="p">)</span>
             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Dumping Material </span><span class="si">%s</span><span class="s1"> data </span><span class="si">%s</span><span class="s1"> to </span><span class="si">%s</span><span class="s1">.&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">)))</span>
+                  <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">)))</span>
+
+            <span class="n">earr</span><span class="p">,</span> <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_fix_nuclide_discrepancy</span><span class="p">(</span><span class="n">db</span><span class="p">,</span> <span class="n">earr</span><span class="p">,</span> <span class="n">nuclide_indices</span><span class="p">,</span> <span class="n">iso_wt_frac</span><span class="p">)</span>
+
             <span class="c1"># Add row for the timestep to EArray and Material Parameters table</span>
             <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
             <span class="n">mpar_table</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">mpar_array</span><span class="p">)</span>
@@ -348,7 +524,7 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
             <span class="n">mpar_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
         <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
 
-<div class="viewcode-block" id="Simulation.store_run_step_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_step_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Simulation.store_step_neutronics_parameters"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.store_step_neutronics_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">store_step_neutronics_parameters</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Adds the following depletion code and SaltProc simulation</span>
 <span class="sd">        data at the current depletion step to the database:</span>
 <span class="sd">        execution time, memory usage, multiplication factor, breeding ratio,</span>
@@ -359,16 +535,19 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
         <span class="c1"># Read info from depcode _res.m File</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_neutronics_parameters</span><span class="p">()</span>
         <span class="c1"># Initialize beta groups number</span>
-        <span class="n">b_g</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">])</span>
+        <span class="n">b_g</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;beta_eff_bds&#39;</span><span class="p">])</span>
         <span class="c1"># numpy array row storage for run info</span>
 
         <span class="k">class</span> <span class="nc">Step_info</span><span class="p">(</span><span class="n">tb</span><span class="o">.</span><span class="n">IsDescription</span><span class="p">):</span>
             <span class="n">keff_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
             <span class="n">keff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">breeding_ratio</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
+            <span class="n">breeding_ratio_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
+            <span class="n">breeding_ratio_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
             <span class="n">cumulative_time_at_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
             <span class="n">power_level</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
+            <span class="n">beta_eff_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
             <span class="n">beta_eff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
+            <span class="n">delayed_neutrons_lambda_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
             <span class="n">delayed_neutrons_lambda_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
             <span class="n">fission_mass_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
             <span class="n">fission_mass_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
@@ -398,14 +577,20 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
 
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
-            <span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span>
+        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
+            <span class="s1">&#39;breeding_ratio_bds&#39;</span><span class="p">]</span>
+        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
+            <span class="s1">&#39;breeding_ratio_eds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;cumulative_time_at_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span>
+        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;beta_eff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
+            <span class="s1">&#39;beta_eff_bds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
-            <span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span>
+            <span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span>
+        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
+            <span class="s1">&#39;delayed_neutrons_lambda_bds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
-            <span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span>
+            <span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
             <span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span>
         <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">neutronics_parameters</span><span class="p">[</span>
@@ -416,7 +601,7 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
         <span class="n">step_info_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
         <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
 
-<div class="viewcode-block" id="Simulation.store_run_init_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_init_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Simulation.store_depcode_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.store_depcode_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">store_depcode_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Adds the following depletion code and SaltProc simulation parameters</span>
 <span class="sd">        to the database:</span>
 <span class="sd">        neutron population, active cycles, inactive cycles, depletion code</span>
@@ -428,20 +613,61 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
         <span class="c1"># numpy arraw row storage for run info</span>
         <span class="c1"># delete and make this datatype specific</span>
         <span class="c1"># to Depcode subclasses</span>
-        <span class="n">step_metadata_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
-            <span class="p">(</span><span class="s1">&#39;neutron_population&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
+        <span class="n">depcode_metadata_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
             <span class="p">(</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">,</span> <span class="s1">&#39;S20&#39;</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">,</span> <span class="s1">&#39;S20&#39;</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;title&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
+            <span class="p">(</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">)</span>
+        <span class="p">])</span>
+        <span class="c1"># Read info from depcode _res.m File</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_metadata</span><span class="p">()</span>
+        <span class="c1"># Store information about material properties in new array row</span>
+        <span class="n">depcode_metadata_row</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">depcode_metadata</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span>
+        <span class="p">)</span>
+        <span class="n">depcode_metadata_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">depcode_metadata_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">depcode_metadata_dtype</span><span class="p">)</span>
+
+        <span class="c1"># Open or restore db and append datat to it</span>
+        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
+            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
+            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">depcode_metadata_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;depcode_metadata&#39;</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+            <span class="n">depcode_metadata_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
+                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
+                <span class="s1">&#39;depcode_metadata&#39;</span><span class="p">,</span>
+                <span class="n">depcode_metadata_array</span><span class="p">,</span>
+                <span class="s2">&quot;Depletion code metadata&quot;</span><span class="p">)</span>
+        <span class="n">depcode_metadata_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
+        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+
+<div class="viewcode-block" id="Simulation.store_step_metadata"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.store_step_metadata">[docs]</a>    <span class="k">def</span> <span class="nf">store_step_metadata</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="sd">&quot;&quot;&quot;Adds the following depletion code and SaltProc simulation parameters</span>
+<span class="sd">        to the database:</span>
+<span class="sd">        neutron population, active cycles, inactive cycles, # of OMP threads, # of MPI</span>
+<span class="sd">        tasks, memory optimization mode (Serpent), depletion timestep size.</span>
+
+<span class="sd">        &quot;&quot;&quot;</span>
+        <span class="c1"># numpy arraw row storage for run info</span>
+        <span class="c1"># delete and make this datatype specific</span>
+        <span class="c1"># to Depcode subclasses</span>
+        <span class="n">step_metadata_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
+            <span class="p">(</span><span class="s1">&#39;neutron_population&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
+            <span class="p">(</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
+            <span class="p">(</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
+            <span class="p">(</span><span class="s1">&#39;depletion_timestep_size&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;execution_time&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
             <span class="p">(</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
         <span class="p">])</span>
@@ -452,18 +678,12 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">,</span>  <span class="c1"># delete the below</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">],</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">],</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">],</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;depletion_timestep_size&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_execution_time&#39;</span><span class="p">],</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">step_metadata</span><span class="p">[</span><span class="s1">&#39;step_memory_usage&#39;</span><span class="p">]</span>
 
         <span class="p">)</span>
         <span class="n">step_metadata_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">step_metadata_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">step_metadata_dtype</span><span class="p">)</span>
@@ -474,17 +694,19 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
             <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
             <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
         <span class="k">try</span><span class="p">:</span>
-            <span class="n">step_metadata_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">)</span>
+            <span class="n">step_metadata_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;depletion_step_metadata&#39;</span><span class="p">)</span>
         <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
             <span class="n">step_metadata_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
                 <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">,</span>
-                <span class="n">step_metadata_array</span><span class="p">,</span>
-                <span class="s2">&quot;Initial depletion code simulation parameters&quot;</span><span class="p">)</span>
+                <span class="s1">&#39;depletion_step_metadata&#39;</span><span class="p">,</span>
+                <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">step_metadata_dtype</span><span class="p">),</span>
+                <span class="s2">&quot;Depletion step metadata&quot;</span><span class="p">)</span>
+
+        <span class="n">step_metadata_table</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">step_metadata_array</span><span class="p">)</span>
         <span class="n">step_metadata_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
         <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
 
-<div class="viewcode-block" id="Simulation.read_k_eds_delta"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">[docs]</a>    <span class="k">def</span> <span class="nf">read_k_eds_delta</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_timestep</span><span class="p">):</span>
+<div class="viewcode-block" id="Simulation.read_k_eds_delta"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.read_k_eds_delta">[docs]</a>    <span class="k">def</span> <span class="nf">read_k_eds_delta</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_timestep</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Reads from database delta between previous and current `keff` at the</span>
 <span class="sd">        end of depletion step and returns `True` if predicted `keff` at the</span>
 <span class="sd">        next depletion step drops below 1.</span>
@@ -516,7 +738,7 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
             <span class="k">else</span><span class="p">:</span>
                 <span class="k">return</span> <span class="kc">False</span></div>
 
-<div class="viewcode-block" id="Simulation.check_switch_geo_trigger"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">[docs]</a>    <span class="k">def</span> <span class="nf">check_switch_geo_trigger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_time</span><span class="p">,</span> <span class="n">switch_time</span><span class="p">):</span>
+<div class="viewcode-block" id="Simulation.check_switch_geo_trigger"><a class="viewcode-back" href="../../api/generated/saltproc.Simulation.html#saltproc.Simulation.check_switch_geo_trigger">[docs]</a>    <span class="k">def</span> <span class="nf">check_switch_geo_trigger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_time</span><span class="p">,</span> <span class="n">switch_time</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Compares the current timestep with the user defined times</span>
 <span class="sd">        at which to switch reactor geometry, and returns `True` if there</span>
 <span class="sd">        is a match.</span>
@@ -568,11 +790,6 @@ <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="simulation.html">master</a></dd>
diff --git a/master/_modules/saltproc/sparger.html b/master/_modules/saltproc/sparger.html
index 8c10dcb21..3cafb0b7d 100644
--- a/master/_modules/saltproc/sparger.html
+++ b/master/_modules/saltproc/sparger.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -80,9 +82,37 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
 
 
-<div class="viewcode-block" id="Sparger"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger">[docs]</a><span class="k">class</span> <span class="nc">Sparger</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger">[docs]</a><span class="k">class</span> <span class="nc">Sparger</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
     <span class="sd">&quot;&quot;&quot;Represents a gas sparger/bubble generator.</span>
 
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    q_salt : float</span>
+<span class="sd">        volumetric salt flow rate (m^3/s)</span>
+<span class="sd">        Default: 0.1</span>
+<span class="sd">    q_he : float</span>
+<span class="sd">        volumetric helium flow rate (m^3/s)</span>
+<span class="sd">        Default: 0.005</span>
+<span class="sd">    length : float</span>
+<span class="sd">        sparger/contractor length (m)</span>
+<span class="sd">        Default: 10</span>
+<span class="sd">    dp : float</span>
+<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
+<span class="sd">        Default: 0.1</span>
+<span class="sd">    db : float</span>
+<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
+<span class="sd">        Default: 0.001</span>
+<span class="sd">    temp_salt: float</span>
+<span class="sd">        salt temperature (K)</span>
+<span class="sd">        Default: 900</span>
+<span class="sd">    area : float</span>
+<span class="sd">        contactor cross-section (m^2)</span>
+<span class="sd">    corr: string</span>
+<span class="sd">         Sherwood correlations: ORNL-TM-2245 or Jaiqi&#39;s</span>
+<span class="sd">         (1) milestone report from Jiaqi [3]</span>
+<span class="sd">         (2) ORNL-TM-2245 Eq.36 [2]</span>
+<span class="sd">         default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
+
 <span class="sd">    Attributes</span>
 <span class="sd">    ----------</span>
 <span class="sd">    h_const : dict of str to float</span>
@@ -149,6 +179,11 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 <span class="sd">    National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.</span>
 <span class="sd">    [3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
 <span class="sd">    Sensitivity Analysis. In preparation</span>
+
+<span class="sd">    Notes</span>
+<span class="sd">    -----</span>
+<span class="sd">    Default values comes from Jiaqi&#39;s simulation</span>
+
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="n">diffusivity</span> <span class="o">=</span> <span class="mf">2.5E-9</span>
@@ -157,42 +192,11 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
     <span class="n">temp_room</span> <span class="o">=</span> <span class="mf">298.15</span>
     <span class="n">exp_const</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mi">2300</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="mi">1900</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="mi">0</span><span class="p">}</span>
 
-<div class="viewcode-block" id="Sparger.__init__"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
                  <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="n">corr</span><span class="o">=</span><span class="s1">&#39;Jiaqi&#39;</span><span class="p">,</span>
                  <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Initializes the Sparger object.</span>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        length : float</span>
-<span class="sd">            sparger/contractor length (m)</span>
-<span class="sd">            Default: 10</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        temp_salt: float</span>
-<span class="sd">            salt temperature (K)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        corr: string</span>
-<span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi&#39;s</span>
-<span class="sd">             (1) milestone report from Jiaqi [3]</span>
-<span class="sd">             (2) ORNL-TM-2245 Eq.36 [2]</span>
-<span class="sd">             default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values comes from Jiaqi&#39;s simulation</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
@@ -203,9 +207,9 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">=</span> <span class="n">temp_salt</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">corr</span> <span class="o">=</span> <span class="n">corr</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
+        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span>
 
-<div class="viewcode-block" id="Sparger.calculate_removal_efficiency"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger.calculate_removal_efficiency"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger.calculate_removal_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_removal_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_name</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Calculate the value of the removal efficiency for a given nuclide</span>
 <span class="sd">        in this process.</span>
 
@@ -226,7 +230,7 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">nuc_name</span><span class="p">]</span></div>
 
-<div class="viewcode-block" id="Sparger.description"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger.description"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in sensitivity</span>
 <span class="sd">        analysis</span>
 <span class="sd">        Return</span>
@@ -256,7 +260,7 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">plt_dict</span></div>
 
-<div class="viewcode-block" id="Sparger.eps"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[docs]</a>    <span class="k">def</span> <span class="nf">eps</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h_const</span><span class="p">,</span> <span class="n">kl_const</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger.eps"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger.eps">[docs]</a>    <span class="k">def</span> <span class="nf">eps</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h_const</span><span class="p">,</span> <span class="n">kl_const</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiency using Eq. 4</span>
 <span class="sd">        from Peebles report (ORNL-TM-2245).</span>
 
@@ -274,7 +278,7 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">beta</span><span class="p">))</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">alpha</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Sparger.sherwood"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[docs]</a>    <span class="k">def</span> <span class="nf">sherwood</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger.sherwood"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger.sherwood">[docs]</a>    <span class="k">def</span> <span class="nf">sherwood</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot; Contains Sherwood number correlations.</span>
 <span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi</span>
 <span class="sd">             (1) Jaiqi Ph.D. dissertation</span>
@@ -287,7 +291,7 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">sh_corr</span></div>
 
-<div class="viewcode-block" id="Sparger.eff"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Sparger.eff"><a class="viewcode-back" href="../../api/generated/saltproc.Sparger.html#saltproc.Sparger.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiencies for target isotopes.</span>
 <span class="sd">        In this function, vl, mu, rho, number_sh, number_sc, number_re and kl</span>
 <span class="sd">        are average liquid velocity (m/s), kinematic viscosity (Pa.s),</span>
@@ -357,11 +361,6 @@ <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="sparger.html">master</a></dd>
diff --git a/master/_sources/api/app.rst.txt b/master/_sources/api/app.rst.txt
new file mode 100644
index 000000000..3c3436080
--- /dev/null
+++ b/master/_sources/api/app.rst.txt
@@ -0,0 +1,17 @@
+:mod:`saltproc.app`
+###################
+
+``app.py`` contains all the functions needed to actually run the code.
+
+Functions
+---------
+
+.. autosummary::
+   :toctree: generated
+   :nosignatures:
+   :template: myfunction.rst
+
+   app.run
+   app.read_main_input
+   app.reprocess_materials
+   app.refill_materials
diff --git a/master/_sources/api/generated/app.read_main_input.rst.txt b/master/_sources/api/generated/app.read_main_input.rst.txt
new file mode 100644
index 000000000..919038258
--- /dev/null
+++ b/master/_sources/api/generated/app.read_main_input.rst.txt
@@ -0,0 +1,6 @@
+app.read_main_input
+===================
+
+.. currentmodule:: app
+
+.. autofunction:: read_main_input
\ No newline at end of file
diff --git a/master/_sources/api/generated/app.refill_materials.rst.txt b/master/_sources/api/generated/app.refill_materials.rst.txt
new file mode 100644
index 000000000..7931014bb
--- /dev/null
+++ b/master/_sources/api/generated/app.refill_materials.rst.txt
@@ -0,0 +1,6 @@
+app.refill_materials
+====================
+
+.. currentmodule:: app
+
+.. autofunction:: refill_materials
\ No newline at end of file
diff --git a/master/_sources/api/generated/app.reprocess_materials.rst.txt b/master/_sources/api/generated/app.reprocess_materials.rst.txt
new file mode 100644
index 000000000..4fae37cf4
--- /dev/null
+++ b/master/_sources/api/generated/app.reprocess_materials.rst.txt
@@ -0,0 +1,6 @@
+app.reprocess_materials
+=======================
+
+.. currentmodule:: app
+
+.. autofunction:: reprocess_materials
\ No newline at end of file
diff --git a/master/_sources/api/generated/app.rst.txt b/master/_sources/api/generated/app.rst.txt
new file mode 100644
index 000000000..01f0a9cee
--- /dev/null
+++ b/master/_sources/api/generated/app.rst.txt
@@ -0,0 +1,36 @@
+app
+===
+
+.. automodule:: app
+
+   
+   
+   
+
+   
+   
+   .. rubric:: Functions
+
+   .. autosummary::
+   
+      get_extraction_process_paths
+      get_extraction_processes
+      get_feeds
+      parse_arguments
+      read_main_input
+      refill_materials
+      reprocess_materials
+      run
+   
+   
+
+   
+   
+   
+
+   
+   
+   
+
+
+
diff --git a/master/_sources/api/generated/app.run.rst.txt b/master/_sources/api/generated/app.run.rst.txt
new file mode 100644
index 000000000..49a1ec6a8
--- /dev/null
+++ b/master/_sources/api/generated/app.run.rst.txt
@@ -0,0 +1,6 @@
+app.run
+=======
+
+.. currentmodule:: app
+
+.. autofunction:: run
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Depcode.rst.txt b/master/_sources/api/generated/saltproc.Depcode.rst.txt
new file mode 100644
index 000000000..ecfee6744
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Depcode.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Depcode
+================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Depcode
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Materialflow.rst.txt b/master/_sources/api/generated/saltproc.Materialflow.rst.txt
new file mode 100644
index 000000000..46f245c15
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Materialflow.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Materialflow
+=====================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Materialflow
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.OpenMCDepcode.rst.txt b/master/_sources/api/generated/saltproc.OpenMCDepcode.rst.txt
new file mode 100644
index 000000000..b9f7837d0
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.OpenMCDepcode.rst.txt
@@ -0,0 +1,7 @@
+saltproc.OpenMCDepcode
+======================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: OpenMCDepcode
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Process.rst.txt b/master/_sources/api/generated/saltproc.Process.rst.txt
new file mode 100644
index 000000000..ec62b921e
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Process.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Process
+================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Process
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Separator.rst.txt b/master/_sources/api/generated/saltproc.Separator.rst.txt
new file mode 100644
index 000000000..da598abc1
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Separator.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Separator
+==================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Separator
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.SerpentDepcode.rst.txt b/master/_sources/api/generated/saltproc.SerpentDepcode.rst.txt
new file mode 100644
index 000000000..ab70dd0b0
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.SerpentDepcode.rst.txt
@@ -0,0 +1,7 @@
+saltproc.SerpentDepcode
+=======================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: SerpentDepcode
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Simulation.rst.txt b/master/_sources/api/generated/saltproc.Simulation.rst.txt
new file mode 100644
index 000000000..7b0dcc562
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Simulation.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Simulation
+===================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Simulation
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/generated/saltproc.Sparger.rst.txt b/master/_sources/api/generated/saltproc.Sparger.rst.txt
new file mode 100644
index 000000000..af524d7c3
--- /dev/null
+++ b/master/_sources/api/generated/saltproc.Sparger.rst.txt
@@ -0,0 +1,7 @@
+saltproc.Sparger
+================
+
+.. currentmodule:: saltproc
+
+.. autoclass:: Sparger
+    :members:
\ No newline at end of file
diff --git a/master/_sources/api/index.rst.txt b/master/_sources/api/index.rst.txt
new file mode 100644
index 000000000..a3fb962bd
--- /dev/null
+++ b/master/_sources/api/index.rst.txt
@@ -0,0 +1,52 @@
+SaltProc API
+=============
+
+Depeletion code interfaces
+--------------------------
+
+.. autosummary::
+   :toctree: generated
+   :nosignatures:
+   :template: myclass.rst
+
+   saltproc.Depcode
+   saltproc.SerpentDepcode
+   saltproc.OpenMCDepcode
+
+Reprocessing
+------------
+
+.. autosummary::
+   :toctree: generated
+   :nosignatures:
+   :template: myclass.rst
+
+   saltproc.Materialflow
+   saltproc.Process
+   saltproc.Sparger
+   saltproc.Separator
+
+Running the simulation
+----------------------
+
+.. autosummary::
+   :toctree: generated
+   :nosignatures:
+
+   app
+
+Results
+-------
+
+.. autosummary::
+   :toctree: generated
+   :nosignatures:
+   :template: myclass.rst
+
+   saltproc.Simulation
+
+
+This is automatically generated API documentation from SaltProc source files.
+
+Click the  "modules" (:ref:`modindex`) link to browse the modules.
+Or, dive right into the autogenerated :doc:`saltproc` docs.
diff --git a/master/_sources/devguide/contributing.rst.txt b/master/_sources/devguide/contributing.rst.txt
index bfe9ab935..1353ee72f 100644
--- a/master/_sources/devguide/contributing.rst.txt
+++ b/master/_sources/devguide/contributing.rst.txt
@@ -1,3 +1,5 @@
+.. _devguide_contributing:
+
 Contributing
 ============
 
diff --git a/master/_sources/devguide/index.rst.txt b/master/_sources/devguide/index.rst.txt
index 20ed85f05..24faed23c 100644
--- a/master/_sources/devguide/index.rst.txt
+++ b/master/_sources/devguide/index.rst.txt
@@ -21,3 +21,5 @@ in this developer's guide that relies on understanding it.
    :maxdepth: 1
 
    contributing
+   style
+   tests
diff --git a/master/_sources/devguide/style.rst.txt b/master/_sources/devguide/style.rst.txt
new file mode 100644
index 000000000..2db659868
--- /dev/null
+++ b/master/_sources/devguide/style.rst.txt
@@ -0,0 +1,9 @@
+.. _devguide_style:
+
+Style Guide
+===========
+
+Style for Python code must follow PEP8_.
+
+.. _PEP8: https://www.python.org/dev/peps/pep-0008/
+
diff --git a/master/_sources/devguide/tests.rst.txt b/master/_sources/devguide/tests.rst.txt
new file mode 100644
index 000000000..b98998cbd
--- /dev/null
+++ b/master/_sources/devguide/tests.rst.txt
@@ -0,0 +1,18 @@
+.. _devguide_tests:
+
+Test Suite
+==========
+
+The SaltProc test suite uses the JEFF 3.1.2 library for Serpent2 integration
+tests, and the ENDF/B VII.1 library for OpenMC integration tests. You can
+obtain the JEFF 3.1.2 library by running the `process_j312.bash` script
+under `scripts/xsdata`, and you can obtain the ENDF/B VII.1 library
+for OpenMC from `this`_ link, which you can also find on
+`openmc.org <openmc.org/official-data-libraries/>`_. The test suite
+requires the `pytest`_ package.
+
+.. _this: https://anl.box.com/shared/static/9igk353zpy8fn9ttvtrqgzvw1vtejoz6.xz
+.. _pytest: https://docs.pytest.org
+
+Whenever a new feature or function is added, a test should also be added
+for that feature.
diff --git a/master/_sources/index.rst.txt b/master/_sources/index.rst.txt
index c89f5714e..cb66568e0 100644
--- a/master/_sources/index.rst.txt
+++ b/master/_sources/index.rst.txt
@@ -7,21 +7,18 @@ SaltProc
 =========
 
 **SaltProc** is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the `Serpent2`_ or `OpenMC`_ Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
+calculations. It couples directly with depletion-capable transport solvers to enable online reprocessing system modeling in depletion
 calculations.
 
 **SaltProc** welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including `pyne`_, `numpy`_, `matplotlib`_,
-`networkx`_, and `pydotplus`_.
+in the Scientific Python ecosystem including `openmc`_, `numpy`_, `matplotlib`_,
+`networkx`_, and `pydot`_.
 
-.. _Serpent2: http://montecarlo.vtt.fi
-.. _OpenMC: https://openmc.org/
-.. _pyne: http://pyne.io/
+.. _openmc: http://openmc.org/
 .. _numpy: http://numpy.org
 .. _matplotlib: http://matplotlib.org
 .. _networkx: http://networkx.github.io
-.. _pydotplus: https://pydotplus.readthedocs.io/
+.. _pydot: https://pypi.org/project/pydot/
 
 
 Documentation
@@ -33,10 +30,12 @@ Documentation
    overview
    installation
    examples
-   src/index
    releasenotes/index
+   methods/index
+   userguide/index
    devguide/index
-   fileformatspec/index
+   api/index
+   io_formats/index
    How to cite <https://github.com/arfc/saltproc/blob/master/CITATION.md>
 
 Indices and tables
diff --git a/master/_sources/installation.rst.txt b/master/_sources/installation.rst.txt
index 33dbf564e..177cc0062 100644
--- a/master/_sources/installation.rst.txt
+++ b/master/_sources/installation.rst.txt
@@ -3,24 +3,24 @@ Installation
 
 SaltProc has the following dependencies:
 
-  #. `Python`_ (>=3.5)
-  #. `Serpent`_ (>=2.1.31)
-  #. `PyNE`_ (>=0.5.11)
-  #. `OpenMC`_ (>=0.13.0)
-  #. `NumPy`_ (>=1.14.0)
+  #. `python`_ (>=3.5)
+  #. `serpent`_ (>=2.1.31)
+  #. `serpentTools`_
+  #. `openmc`_ (>=0.13.0)
+  #. `numpy`_ (>=1.14.0)
   #. `PyTables`_
-  #. `NetworkX`_
-  #. `PyDotPlus`_
+  #. `networkx`_
+  #. `pydot`_
   #. `jsonschema`_
 
-.. _Serpent: http://montecarlo.vtt.fi
-.. _PyNE: http://pyne.io
-.. _OpenMC: https://openmc.org/
-.. _Python: http://python.org
-.. _NumPy: http://numpy.org
+.. _serpent: http://montecarlo.vtt.fi
+.. _serpentTools: https://serpent-tools.readthedocs.io/en/master/index.html
+.. _openmc: https://openmc.org/
+.. _python: http://python.org
+.. _numpy: http://numpy.org
 .. _PyTables: http://pytables.org
-.. _NetworkX: http://networkx.github.io
-.. _PyDotPlus: https://pydotplus.readthedocs.io/
+.. _networkx: http://networkx.github.io
+.. _pydot: https://github.com/pydot/pydot
 .. _pytest: https://docs.pytest.org
 .. _pytest documentation: https://docs.pytest.org/en/latest/how-to/usage.html
 .. _sphinx: https://www.sphinx-doc.org
@@ -36,7 +36,6 @@ Optional Dependencies:
   #. `pytest`_ (for testing)
   #. `sphinx`_ and `sphinx-rtd-theme`_ (for building documentation)
   #. `matplotlib`_
-  #. `ViTables`_
 
 
 
@@ -46,18 +45,9 @@ Clone the source from the SaltProc repository from `GitHub`_.
 
    git clone git@github.com:arfc/saltproc.git
 
-Note on installing OpenMC
--------------------------
-The ``conda-forge`` build of OpenMC 0.13.0 cannot be installed alongside the ``conda-forge`` build of PyNE due to a conflict in the pinned HDF5 versions required by those builds. Since both are dependencies, users will need to pick one to install from source. We recommend users install OpenMC from source as it has a more active community and a step-by-step guide on how to install it from source on most machines. For Ubuntu users, consider using the `ubuntu-nuclear-software-installer`_
-script to install OpenMC from source.
-
-.. _ubuntu-nuclear-software-installer: https://github.com/yardasol/ubuntu-nuclear-software-installer
-
-Otherwise, all of the dependencies are readily available through the `conda package manager`_.
-
 .. note:: We recommend using the `mamba`_ CLI tool to install packages quickly. SaltProc has a compltex package dependency structure which can result is long environment solve times in the default ``conda`` solver. ``mamba`` is a reimplementation of ``conda`` in ``C++`` and we have found it is significantly faster.
 
-You can download the required ones using ``conda`` on the provided ``environment.yml``
+You can download the required packages using ``conda`` on the provided ``environment.yml``
 file in the repository:
 
 .. code-block:: bash
diff --git a/master/_sources/fileformatspec/databasefile.rst.txt b/master/_sources/io_formats/databasefile.rst.txt
similarity index 99%
rename from master/_sources/fileformatspec/databasefile.rst.txt
rename to master/_sources/io_formats/databasefile.rst.txt
index 918dfcbaa..42e2f9603 100644
--- a/master/_sources/fileformatspec/databasefile.rst.txt
+++ b/master/_sources/io_formats/databasefile.rst.txt
@@ -1,3 +1,5 @@
+.. _results_file:
+
 ================
 HDF5 Output File
 ================
diff --git a/master/_sources/fileformatspec/depcode_input.rst.txt b/master/_sources/io_formats/depcode_input.rst.txt
similarity index 97%
rename from master/_sources/fileformatspec/depcode_input.rst.txt
rename to master/_sources/io_formats/depcode_input.rst.txt
index a00acec66..7baf80643 100644
--- a/master/_sources/fileformatspec/depcode_input.rst.txt
+++ b/master/_sources/io_formats/depcode_input.rst.txt
@@ -95,6 +95,9 @@ Serpent-specific properties
   :pattern: 
     ``^(.\\/)*(.*)$``
                   
+
+.. _zaid_convention_property:
+
 ``zaid_convention``
 ~~~~~~~~~~~~~~~~~~~
 
@@ -209,7 +212,7 @@ OpenMC-specific properties
     ``string``
 
 
-.. _opemc_depletion_settings_property:
+.. _openmc_depletion_settings_property:
 
 ``depletion_settings``
 ~~~~~~~~~~~~~~~~~~~~~~
@@ -363,23 +366,6 @@ OpenMC-specific properties
     ``null``
 
 
-``dilute_initial``
-~~~~~~~~~~~~~~~~~~
-
-  :description:
-    Initial atom density to add for nuclides that are zero in initial
-    condition.
-
-  :type:
-    ``number``
-
-  :minimum:
-    0
-
-  :default:
-    1000
-
-
 ``fission_yield_mode``
 ~~~~~~~~~~~~~~~~~~~~~~
 
diff --git a/master/_sources/fileformatspec/index.rst.txt b/master/_sources/io_formats/index.rst.txt
similarity index 74%
rename from master/_sources/fileformatspec/index.rst.txt
rename to master/_sources/io_formats/index.rst.txt
index bcee28b22..fb39c5dce 100644
--- a/master/_sources/fileformatspec/index.rst.txt
+++ b/master/_sources/io_formats/index.rst.txt
@@ -1,9 +1,9 @@
-.. _fileformatspec:
+.. _io_formats:
 
 File Format Specifications
 ==========================
 
-.. _fileformatspect_input_files:
+.. _io_formats_input_files:
 
 Input Files
 -----------
@@ -17,7 +17,7 @@ Input Files
   reactor_input
 
 
-.. _fileformatspec_output_files:
+.. _io_formats_output_files:
 
 Output Files
 ------------
diff --git a/master/_sources/fileformatspec/reactor_input.rst.txt b/master/_sources/io_formats/reactor_input.rst.txt
similarity index 98%
rename from master/_sources/fileformatspec/reactor_input.rst.txt
rename to master/_sources/io_formats/reactor_input.rst.txt
index c61378945..f402320cc 100644
--- a/master/_sources/fileformatspec/reactor_input.rst.txt
+++ b/master/_sources/io_formats/reactor_input.rst.txt
@@ -103,7 +103,7 @@ Required properties: ``volume``, ``mass_flowrate``, ``power_levels``,
   :default:
     ``stepwise``
 
-.. _timestep_unites_property:
+.. _timestep_units_property:
 
 ``timestep_units``
 ------------------
diff --git a/master/_sources/fileformatspec/saltproc_input.rst.txt b/master/_sources/io_formats/saltproc_input.rst.txt
similarity index 80%
rename from master/_sources/fileformatspec/saltproc_input.rst.txt
rename to master/_sources/io_formats/saltproc_input.rst.txt
index 36885ec68..15135c20f 100644
--- a/master/_sources/fileformatspec/saltproc_input.rst.txt
+++ b/master/_sources/io_formats/saltproc_input.rst.txt
@@ -72,7 +72,7 @@ Required properties are as follows: ``proc_input_file``, ``dot_input_file``, ``o
 .. _mpi_args_property:
 
 ``mpi_args``
----------------------
+------------
 
   :description:
     Arguments for running simulations on supercomputers using ``mpiexec``
@@ -90,6 +90,39 @@ Required properties are as follows: ``proc_input_file``, ``dot_input_file``, ``o
     ``null``
 
 
+.. _rebuild_saltproc_results_property:
+
+``rebuild_saltproc_results``
+----------------------------
+
+  :description:
+    Flag to reconstruct the ``saltproc_results.h5`` files from the stepwise
+    depletion simulation results.
+    
+
+  :type:
+    ``boolean``
+
+  :default:
+    ``false``
+
+
+.. _run_without_reprocessing_property:
+
+``run_without_reprocessing``
+----------------------------
+
+  :description:
+    Flag to run SaltProc with no material reprocessing.
+    
+
+  :type:
+    ``boolean``
+
+  :default:
+    ``false``
+
+
 .. _depcode_property:
 
 ``depcode``
diff --git a/master/_sources/fileformatspec/simulation_input.rst.txt b/master/_sources/io_formats/simulation_input.rst.txt
similarity index 100%
rename from master/_sources/fileformatspec/simulation_input.rst.txt
rename to master/_sources/io_formats/simulation_input.rst.txt
diff --git a/master/_sources/methods/index.rst.txt b/master/_sources/methods/index.rst.txt
new file mode 100644
index 000000000..3cc2274c5
--- /dev/null
+++ b/master/_sources/methods/index.rst.txt
@@ -0,0 +1,17 @@
+.. _methods:
+
+======================
+Theory and Methodology
+======================
+
+Welcome to the SaltProc theory and methodology guide. Here you'll find details
+about the SaltProc's program flow, design, mathematical background, and more.
+
+.. note:: The SaltProc theory manual is a work in progress. 
+   Information contained within may change, so make sure to check the 
+   release notes for updates!
+
+.. toctree::
+   :maxdepth: 1
+
+   reprocessing
diff --git a/master/_sources/methods/reprocessing.rst.txt b/master/_sources/methods/reprocessing.rst.txt
new file mode 100644
index 000000000..a7009b319
--- /dev/null
+++ b/master/_sources/methods/reprocessing.rst.txt
@@ -0,0 +1,165 @@
+.. _methods_reprocessing:
+
+Reprocessing Methods
+====================
+
+SaltProc models separations and feeds using three different data structures:
+
+Material flows
+--------------
+A material flow represents a material with a given
+volume :math:`V`, density :math:`\rho`, temperature :math:`T`, and nuclide composition :math:`\mathbf{N}` flowing in or out
+of a processing component.
+It can also include information such as void fraction. :class:`saltproc.Materialflow`
+objects contain the prior mentioned quantities as attributes, as well as
+methods to perform the following:
+
+1. Add two :class:`saltproc.Materialflow` objects together
+
+   a. The mass of the sum is :math:`m_{1+2} = m_{1} + m_{2}`
+
+   b. The composition of the sum is :math:`\mathbf{N}_{1+2} = \frac{\mathbf{N}_{1} * m_{1} + \mathbf{N}_{2} * m_{2}}{m_{1} + m_{2}}`
+
+   c. The temperature and density are assumed to be equal to the first :class:`saltproc.Materialflow` object
+
+2. Scale a :class:`saltproc.Materialflow` object by a constant, specifically the mass and volume of the :class:`saltproc.Materialflow` object.
+    
+:class:`saltproc.Materialflow`. objects are used to store information about
+materials in reprocessing as well as materials being fed into the system.
+
+Processes
+.........
+A process is an abstraction of chemical separation, extraction, or some
+other removal. Two processes commonly used in \Gls{msr}s include
+extracting metals using gas sparging and filtering. In SaltProc,
+:class:`saltproc.Process` objects contain data and functions to perform their
+associated processing task. At a minimum, a :class:`saltproc.Process` object includes
+the following
+
+1. A mass flow rate, :math:`\dot{m}`, which specifies the mass of fuel salt a process can operate on per unit time
+2. An extraction efficiency, :math:`\epsilon`, for target element(s)
+3. A method to apply the process on a :class:`saltproc.Materialflow` object
+
+Graphs
+......
+A graph is a mathematical object that connects *nodes*
+with *edges*. More formally,
+a graph is a pair of sets, :math:`(V, E)`, where
+
+- :math:`V` is a set whose elements are called nodes
+- :math:`E` is a set whose elements are pairs of elements in :math:`V`
+
+A directed graph is a graph in which the elements are ordered pairs of elements
+in :math:`V`. This gives the edges a direction. SaltProc uses directed graphs to
+model the order and path in which processes operate on materials.
+        
+Processes and feeds are defined in one JSON input file, and the graph linking
+processes is defined in a DOT file. The process graph must be directed and
+acyclic in order to work with SaltProc. At runtime,
+SaltProc reads this input file to create :class:`saltproc.Process` objects for each item
+in the file. Every process file must have at least a :class:`core_outlet` and
+:class:`core_inlet` Process.
+
+Material reprocessing
+---------------------
+
+Recall that SaltProc uses a *batchwise* reprocessing scheme.
+Let :math:`\mathbf{n}(t)^{j}` denote the nuclide mass vector for depletable material
+:math:`j` as a function of time. For each depletable material :math:`j`, the depletion
+solver numerically integrates the equation
+
+.. math::
+
+    \frac{d\mathbf{n}^{j}(t)}{dt} = \mathbf{A}(\mathbf{n}^{j}(t), t)
+
+from time :math:`i` to time :math:`i+1` to get :math:`\mathbf{n}^{j}(i+1)`, where :math:`A` is the
+depletion matrix. This sequence is called a **depletion step**.
+
+Now, let the mass and volume of depletable material :math:`j` be
+:math:`m^{j}` and :math:`V^{j}` respectively. Let the mass flow rate of process :math:`p` be
+:math:`\dot{m}_{p}`. At the end of each depletion step, SaltProc constructs process
+paths from the process graph defined in the DOT file, and sequentially applies
+each process :math:`p` in each path :math:`r` to the relevant materials to obtain through
+and waste streams for each material. SaltProc tracks the mass and nuclide vector for both through and waste streams. For through
+streams, SaltProc also tracks the volume and mass flow rate. For every node
+:math:`p\in[0,l]` where :math:`0` represents the core outlet and :math:`l` represents the core
+inlet, in the path :math:`r`, for the through streams we have
+
+.. math::
+
+    \mathbf{n}^{j}_{\text{through, }p,r} = \mathbf{n}^{j}_{\text{through, }p-1,r} (1 - \pmb{\epsilon}^{j}_{p,r})
+
+.. math::
+
+    m^{j}_{\text{through, } p,r} = \alpha_{p} m^{j}_{\text{through, }p-1,r} - m^{j}_{\text{waste, }p,r}
+
+.. math::
+
+    V^{j}_{\text{through, }p,r} = \alpha_{p}V^{j}_{\text{through, }p-1,r}
+
+where 
+
+.. math::
+
+    \alpha_{p,r} = \frac{\dot{m}_{p,r}}{\dot{m}_{\text{outlet}}}
+
+and the initial conditions are 
+
+.. math::
+
+    \mathbf{n}^{j}_{\text{through, }0,r} = \mathbf{n}^{j}(i+1)
+
+.. math::
+
+    m^{j}_{\text{through, }0,r} = \rho^{j}(i+1)V^{j}(i+1)
+
+.. math::
+
+    V^{j}_{\text{through, }0,r} = V^{j}(i+1)
+
+Similarly, for the waste streams, we have
+
+.. math::
+
+    \mathbf{n}^{j}_{\text{waste, }p,r} = \mathbf{n}^{j}_{\text{through, }p-1,r} \cdot \pmb{\epsilon}^{j}_{p,r}
+
+.. math::
+
+    m^{j}_{\text{waste, }p,r} = \alpha_{p,r} m^{j}_{\text{through, }p-1,r} \langle\mathbf{1},\mathbf{n}^{j}_{\text{waste, }p,r}\rangle
+
+
+SaltProc does not currently track the volume and mass flow rate of waste streams.
+In practice, since it is extremely resource intensive to separate individual
+isotopes, SaltProc only allows extraction efficiencies to be defined for
+elements. Additionally, any chemical processing would only act on elements, so there is little point in having isotope specific extration efficiencies. So, for any isotope :math:`a` of xenon,
+:math:`\epsilon_{\ce{^{a}Xe}} = \epsilon_{\ce{^{a^{\prime}}Xe}}`  where
+:math:`a^{\prime} \in \text{isotopes of Xe}`
+
+After the recursive computation, SaltProc sums through and waste streams over all
+paths to get the total through stream at the inlet, and the total waste stream at
+the inlet which represents all material removed during reprocessing. In practice,
+we are working with nuclide mass fractions, not total masses, so in the program
+there is an expansion and then normalization of the vectors:
+
+.. math::
+
+    \mathbf{n}^{j}_\text{through, inlet, net} = \frac{\sum_{r} m^{j}_{\text{through, inlet, }r} \mathbf{n}^{j}_{\text{through, inlet, }r}}{\sum_{r} m^{j}_{\text{through, inlet, }r}}
+
+.. math::
+
+    \mathbf{n}^{j}_{\text{waste, inlet, net}} = \frac{\sum_{r} m^{j}_{\text{waste, inlet, }r} \mathbf{n}^{j}_{\text{waste, inlet, }r}}{m^{j}_{\text{waste, inlet, }r}}
+
+Before running the next depletion step, for any material that has an associated
+feed material defined, SaltProc will add an amount of the feed material
+equivalent to the removed mass so that the mass of fuel salt undergoing depletion
+remains constant. For feed :math:`j'` corresponding to material :math:`j`, we have
+
+.. math::
+
+    \mathbf{n}^{j}_\text{filled} = \frac{m^{j}_{\text{through, }l}\mathbf{n}^{j}_\text{through, inlet, net} +  m^{j}_{\text{removed}}\mathbf{n}^{j'}}{m^{j}_{\text{through, }0}}
+
+where 
+
+.. math::
+
+    m^{j}_\text{removed} = m^{j}_{\text{through, }0} - m^{j}_{\text{through, }l}
diff --git a/master/_sources/overview.rst.txt b/master/_sources/overview.rst.txt
index ee4686579..a194a2b4a 100644
--- a/master/_sources/overview.rst.txt
+++ b/master/_sources/overview.rst.txt
@@ -1,15 +1,32 @@
+.. _saltproc_overview:
+
 Overview
 =========
 
-SaltProc couples directly with a variety of Monte Carlo neutron transport codes with depletion capabilities and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:
+SaltProc couples directly with a variety of neutron transport codes with
+depletion capabilities and enables sophisticated, multi-component online fuel
+reprocessing system modeling. SaltProc is the first open-source tool for
+liquid-fueled depletion simulations with the following capabilities:
+
+  - Neutron poison removal with user-defined efficiency,
+
+  - Make-up mass loss by fresh fuel injection,
+
+  - Reactivity control by adjusting fuel feed rate or reactor geometry (i.e. control rod depth),
+
+  - Can model any reactor design,
+  
+  - Couples with OpenMC and SERPENT (and extendable to other tools such as MCNP or SCALE). 
+.. _supported_codes:
+
+Currently supported transport solvers:
+
+  - `Serpent2`_
+
+  - `OpenMC`_
 
-- neutron poison removal with user-defined efficiency,
-- make-up mass loss by fresh fuel injection,
-- reactivity control by adjusting fuel feed rate or reactor geometry (i.e. control rod depth),
-- can model any reactor design,
-- potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).
+.. _Serpent2: http://montecarlo.vtt.fi
+.. _OpenMC: https://openmc.org/
 
 
 How SaltProc works
@@ -18,16 +35,16 @@ How SaltProc works
 SaltProc is a driver for Monte Carlo transport codes with depletion capabilities (henceforth referred to as *transport-depletion codes*) to simulate online fuel salt reprocessing for
 Molten Salt Reactors. It performs following major functions:
 
-  - runs the transport-depletion code
-  - parses and stores depleted material data in HDF5
-  - modifies parsed material composition (`reprocesses`)
-  - creates a new transport-depletion code input file
+  - Runs the transport-depletion code
+  - Parses and stores depleted material data in HDF5
+  - Modifies parsed material composition (`reprocesses`)
+  - Creates a new transport-depletion code input file
 
 
 The code logic flow is the following:
 
   1. Runs the transport-depletion code (:meth:`saltproc.depcode.Depcode.run_depcode()`)
-  2. Parses through the output `*_dep.m` file and creates PyNE Material object
+  2. Parses through the output `*_dep.m` file and creates Materialflow object
      for each burnable material.
   3. Processes Fuel (:meth:`saltproc.app.reprocess_materials()` and :meth:`saltproc.app.refill_materials()`):
 
diff --git a/master/_sources/releasenotes/v0.5.0.rst.txt b/master/_sources/releasenotes/v0.5.0.rst.txt
index 82a9442e4..8ec0eead5 100644
--- a/master/_sources/releasenotes/v0.5.0.rst.txt
+++ b/master/_sources/releasenotes/v0.5.0.rst.txt
@@ -15,6 +15,8 @@ Release notes for v0.5.0
 
 
 .. _openmc: https://github.com/openmc-dev/openmc
+.. _serpentTools: https://github.com/CORE-GATECH-GROUP/serpent-tools
+.. _pytables: https://github.com/PyTables/PyTables
 .. _@yardasol: https://github.com/yardasol
 
 
@@ -39,12 +41,16 @@ Dependency Changes
   Describe any new/removed/modified package dependencies
 
 
-- ``SaltProc`` now optionally requires the following package:
+- ``SaltProc`` now requires the following package:
 
   - (new) → `openmc`_
+  - (new) → `serpentTools`_
+  - (formality) → `pytables`_
   
-- ``pyne>=0.5.11`` → ``pyne>=0.5.11=nomoab_noopenmc*``
-  
+- ``pyne>=0.5.11`` →  (removed)
+
+- ``pydotplus`` →  ``pydot``
+
 
 
 New Features
@@ -173,11 +179,15 @@ Python API Changes
     - (new function) →  ``get_neutron_settings()``
     - (new function) →  ``_get_burnable_materials_file()`` 
     - (new function) →  ``_get_burnable_material_card_data()``
+    - (new function) →  ``resolve_include_paths()``
+    - (new function) →  ``_convert_name_to_nuccode()``
     - (new parameter) →  ``zaid_convention``
 
 
   - ``OpenMCDepcode`` is a ``Depcode`` subclass that interfaces with ``openmc``. This class implements the following functions 
     - ``run_depletion_step()``
+    - ``write_saltproc_openmc_tallies()``
+    - ``convert_nuclide_code_to_name()``
     - ``switch_to_next_geometry()``
     - ``write_runtime_input()``
     - ``write_depletion_settings()``
@@ -202,10 +212,15 @@ Python API Changes
     - (new) → ``timestep_units``
     - (new) → ``timestep_type``
 
+  - (new) → ``Results`` 
+
+    - New class for reading the `saltproc_results.h5` file
+
   - ``Simulation``
 
     -  ``core_number`` →  (removed)
     -  ``node_number`` →  (removed)
+    - (new function) → ``_add_missing_nuclides()``
 
   - ``Sparger``
 
@@ -241,4 +256,10 @@ The following people reviewed code for this release of SaltProc:
 ..
   `@gh_username <https://github.com/gh_uname>`_
 
+- `@smpark7 <https://github.com/smpark7>`_
+- `@LukeSeifert <https://github.com/LukeSeifert>`_
+- `@munkm <https://github.com/munkm>`_
+- `@abachma2 <https://github.com/abachma2>`_
+
+
 
diff --git a/master/_sources/src/index.rst.txt b/master/_sources/src/index.rst.txt
deleted file mode 100644
index f09f9d4c0..000000000
--- a/master/_sources/src/index.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-SaltProc API
-=============
-
-This is automatically generated API documentation from SaltProc source files.
-
-Click the  "modules" (:ref:`modindex`) link to browse the modules.
-Or, dive right into the autogenerated :doc:`saltproc` docs.
diff --git a/master/_sources/src/modules.rst.txt b/master/_sources/src/modules.rst.txt
deleted file mode 100644
index 1da7d5d98..000000000
--- a/master/_sources/src/modules.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc
-========
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc
diff --git a/master/_sources/src/saltproc.abc.rst.txt b/master/_sources/src/saltproc.abc.rst.txt
deleted file mode 100644
index 309981b5d..000000000
--- a/master/_sources/src/saltproc.abc.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.abc module
-===================
-
-.. automodule:: saltproc.abc
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.app.rst.txt b/master/_sources/src/saltproc.app.rst.txt
deleted file mode 100644
index a9b319fdd..000000000
--- a/master/_sources/src/saltproc.app.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.app module
-===================
-
-.. automodule:: saltproc.app
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.materialflow.rst.txt b/master/_sources/src/saltproc.materialflow.rst.txt
deleted file mode 100644
index 31a768303..000000000
--- a/master/_sources/src/saltproc.materialflow.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.materialflow module
-============================
-
-.. automodule:: saltproc.materialflow
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.openmc_depcode.rst.txt b/master/_sources/src/saltproc.openmc_depcode.rst.txt
deleted file mode 100644
index bc7633c5b..000000000
--- a/master/_sources/src/saltproc.openmc_depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.openmc\_depcode module
-===============================
-
-.. automodule:: saltproc.openmc_depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.openmc_deplete.rst.txt b/master/_sources/src/saltproc.openmc_deplete.rst.txt
deleted file mode 100644
index 35a4e0cba..000000000
--- a/master/_sources/src/saltproc.openmc_deplete.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.openmc\_deplete module
-===============================
-
-.. automodule:: saltproc.openmc_deplete
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.process.rst.txt b/master/_sources/src/saltproc.process.rst.txt
deleted file mode 100644
index 2ebcc3e14..000000000
--- a/master/_sources/src/saltproc.process.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.process module
-=======================
-
-.. automodule:: saltproc.process
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.reactor.rst.txt b/master/_sources/src/saltproc.reactor.rst.txt
deleted file mode 100644
index 07925c97a..000000000
--- a/master/_sources/src/saltproc.reactor.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.reactor module
-=======================
-
-.. automodule:: saltproc.reactor
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.rst.txt b/master/_sources/src/saltproc.rst.txt
deleted file mode 100644
index eac135988..000000000
--- a/master/_sources/src/saltproc.rst.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-saltproc package
-================
-
-Submodules
-----------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.abc
-   saltproc.app
-   saltproc.materialflow
-   saltproc.openmc_depcode
-   saltproc.openmc_deplete
-   saltproc.process
-   saltproc.reactor
-   saltproc.separator
-   saltproc.serpent_depcode
-   saltproc.simulation
-   saltproc.sparger
-   saltproc.version
-
-Module contents
----------------
-
-.. automodule:: saltproc
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.separator.rst.txt b/master/_sources/src/saltproc.separator.rst.txt
deleted file mode 100644
index 2228b690c..000000000
--- a/master/_sources/src/saltproc.separator.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.separator module
-=========================
-
-.. automodule:: saltproc.separator
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.serpent_depcode.rst.txt b/master/_sources/src/saltproc.serpent_depcode.rst.txt
deleted file mode 100644
index edcc3a833..000000000
--- a/master/_sources/src/saltproc.serpent_depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.serpent\_depcode module
-================================
-
-.. automodule:: saltproc.serpent_depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.simulation.rst.txt b/master/_sources/src/saltproc.simulation.rst.txt
deleted file mode 100644
index 7572435ea..000000000
--- a/master/_sources/src/saltproc.simulation.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.simulation module
-==========================
-
-.. automodule:: saltproc.simulation
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.sparger.rst.txt b/master/_sources/src/saltproc.sparger.rst.txt
deleted file mode 100644
index 5460a476c..000000000
--- a/master/_sources/src/saltproc.sparger.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.sparger module
-=======================
-
-.. automodule:: saltproc.sparger
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/src/saltproc.version.rst.txt b/master/_sources/src/saltproc.version.rst.txt
deleted file mode 100644
index 9d7ecdbdf..000000000
--- a/master/_sources/src/saltproc.version.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.version module
-=======================
-
-.. automodule:: saltproc.version
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/master/_sources/userguide/basics.rst.txt b/master/_sources/userguide/basics.rst.txt
new file mode 100644
index 000000000..8ec8c43cb
--- /dev/null
+++ b/master/_sources/userguide/basics.rst.txt
@@ -0,0 +1,118 @@
+.. _userguide_basics:
+
+Basics of Using SaltProc
+========================
+
+Running a Model
+---------------
+SaltProc is built in Python, so rather than calling an executable to run
+SaltProc, you call Python and invoke the SaltProc module. You use the ``-i``
+flag to specify a path to the :ref:`saltproc_input`:
+
+.. code-block:: bash
+
+   python -m saltproc -i saltproc_input.json
+
+The first thing SaltProc does when running a simulation is read this input file
+and validate that it is correct. At a minium, the input file requires six
+parameters to be filled by the user:
+
+.. admonition:: Required
+   :class: error
+   
+   :ref:`proc_input_file_property`
+     This file describes the properties of each processing system component.
+
+   :ref:`dot_input_file_property`
+     This file describes the strucutre of the processing system as a graph
+
+   :ref:`n_depletion_steps_property`
+     Specifies the number of depletion steps to run.
+
+   :ref:`depcode_property`
+     This parameter contains runtime options for the transport code as a
+     dictionary. The parameters expected change depending on which transport
+     code is used, but at a minimum there will be parameters to specify
+     geometry and material files for all transport codes. See
+     :ref:`depcode_input` for a full listing of these options.
+
+   :ref:`simulation_property`
+     This parameter contains the name of the simulation, as well as
+     options to restart the simulation from when it stopped (in the 
+     case of a runtime error), as well as an option to turn on geometry
+     switching. See :ref:`simulation_input` for a full listing of these
+     options
+
+   :ref:`reactor_property`
+     This parameter contains setttings for the depletion simulation
+     (number of timesteps, power level, timestep units). See
+     :ref:`reactor_input` for a full listing of these options.
+
+.. admonition:: Optional
+   :class: note
+
+   :ref:`mpi_args_property`
+     Users running a simulation on a computer with multiple cores, sockets, or
+     nodes will benefit from utilizing all available hardware resources on the
+     transport simulation. This parameter holds commands to execute a simulation
+     using MPI for distribtued memory parallelism. Note that the user must include
+     the executable in this parameter (``mpiexec``, ``mpirun``, etc.). We discuss
+     this in greater detail in :ref:`userguide_parallel`.
+
+JavaScript Object Notation (JSON)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+SaltProc uses `JSON`_ to structure its input files. JSON is used as it has
+all the capabilities of stuctured markup language like `XML`_, but intead
+of using tags, it is structured more or less like a dictionary data structure.
+This has the benefit of being extremely easy and quick to write by hand.
+
+.. _JSON: https://www.json.org/json-en.html
+.. _XML: https://www.w3.org/XML/
+
+Creating input files
+~~~~~~~~~~~~~~~~~~~~
+SaltProc input files are written by hand. We cover how to do this in detail
+in the next section of the User Guide.
+
+.. note::
+   The majority of work preparing
+   for a SaltProc simulation is not writing the SaltProc input file, but
+   creating the model for the transport code. The steps and syntax for
+   this vary from code to code. See
+   :ref:`the list of supported codes <supported_codes>` for links to
+   documentation.
+
+Viewing and Analyzing Results
+-----------------------------
+After a simulation is completed by running ``saltproc``, all of the transport
+code results and input files are stored in the ``saltproc_runtime`` directory
+(unless you provided a path for :ref:`output_path_property` in the input file,
+in which case the results are stored in a directory with that path):
+
+``saltproc_results.h5``
+  An HDF5 file containing material compositions for all depletable materials,
+  including compositions before and after reprocessing, as well as delayed
+  neutron data. See :ref:`results_file` for a full listing of parameters.
+
+``step_i_data``
+  A directory storing input and output files for the transport simulation(s)
+  for the :math:`i`-th depletion step.
+
+.. note:: 
+   Users must use `PyTables`_ to load and read results directly from
+   the HDF5 file. An API for doing this is in development.
+
+.. _PyTables: http://pytables.org
+
+Physical Units
+--------------
+SaltProc results use the following units unless otherwise specified.
+
+======= ============ ======
+Measure Default unit Symbol
+======= ============ ======
+mass    kilogram     kg
+power   watt         W
+time    days         d
+======= ============ ======
+
diff --git a/master/_sources/userguide/beginners.rst.txt b/master/_sources/userguide/beginners.rst.txt
new file mode 100644
index 000000000..329c2dbd7
--- /dev/null
+++ b/master/_sources/userguide/beginners.rst.txt
@@ -0,0 +1,31 @@
+.. _userguide_beginners:
+
+A Beginner's Guide to SaltProc
+==============================
+
+What does SaltProc do?
+----------------------
+In a nutshell, SaltProc is an interface code for transport solvers with
+depletion capabilites that simulates chemical reprocessing of fuel. In general,
+there are two ways to simulate chemical fuel reprocessing: continuous, and
+batchwise. As an interface code, SaltProc uses a batchwise approach to simulate
+chemical fuel reprocessing. See :ref:`methods_reprocessing` for further details on
+how this works.
+
+How does it work?
+-----------------
+SaltProc uses abstraction to represent chemical reprocessing components --
+hereon referred to as *processes*. These processes are linked together using a
+graph. SaltProc routes depleted materials through this graph and applies the
+respecive process at each node. See :ref:`methods_reprocessing` for a more in-depth
+breakdown of this design.
+
+What do I need to know?
+-----------------------
+If you are starting to work with SaltProc, there are a few things you should be familiar with:
+
+  - You should be comfortable with working in a command line environment.
+
+  - You should be familiar with at least one of the supported transport solvers.
+  See :ref:`the list of supported codes <supported_codes>` for a list of
+  currently supported transport solvers.
diff --git a/master/_sources/userguide/index.rst.txt b/master/_sources/userguide/index.rst.txt
new file mode 100644
index 000000000..5d64e0360
--- /dev/null
+++ b/master/_sources/userguide/index.rst.txt
@@ -0,0 +1,24 @@
+.. _userguide:
+
+============
+User's Guide
+============
+
+Welcome to the SaltProc User guide.
+
+.. note:: The SaltProc user guide is a work in progress. 
+   Information contained within may change, so make sure to check the 
+   release notes for updates!
+
+.. toctree::
+   :maxdepth: 1
+
+   beginners
+   basics
+   input
+   processing_system
+   templates
+   scripts
+   troubleshooting
+   parallel
+
diff --git a/master/_sources/userguide/input.rst.txt b/master/_sources/userguide/input.rst.txt
new file mode 100644
index 000000000..3130915ee
--- /dev/null
+++ b/master/_sources/userguide/input.rst.txt
@@ -0,0 +1,218 @@
+.. _userguide_input:
+
+Creating a SaltProc input file
+==============================
+
+The SaltProc input file passes three categories of information to the program:
+
+1. Paths to files that describe the reprocessing system
+2. Paths to template files for the transport code.
+3. Depletion settings
+
+In the following sections, we will create an example SaltProc input file, and
+explain the purpose for each input variable. For a more detailed breakdown of
+the inputs, check the :ref:`io_formats_input_files` page.
+
+Creating a JSON file
+--------------------
+JSON files themselves are not that complicated. They consist of key-value pairs,
+much like a dictionary in Python. The entire JSON files needs to be wrapped with curly brackets, so we start our file like so:
+
+.. code-block:: json
+
+   {
+
+   }
+
+
+Base paremters
+-------------------
+There are two required base parameters: :ref:`proc_input_file_property`, a path to the file
+that defines processes, and :ref:`dot_input_file_property`, a path to the file that defines
+the process graph. We will learn how to create these files in the next chapter,
+but for now we just need to specify a path. We recommend storing all the input
+files in the same directory, but this is not requried.
+
+Let's name our process file `processes.json` and the process graph file `graph.dot`:
+
+.. code-block:: json
+
+   {
+       "proc_input_file": "processes.json",
+       "dot_input_file": "graph.dot"
+   }
+
+
+Transport code parameters
+-------------------------
+As explained in :ref:`methods_coupling`, SaltProc uses template files provided
+by the user to create runtime files that are used as inputs to the transport
+code for each depletion step. The :ref:`depcode_property` setting in the
+SaltProc input file store paths to these template files, as well as other
+settings. The only two input parameters that have the same format for
+different transport codes are :ref:`codename_property` and
+:ref:`geo_file_paths_property`. ``codename`` is a string that indicates the
+transport code you are using. Accepted values are lowercased versions of the
+supported transport code (e.g. "serpent", "openmc"). ``geo_file_paths`` is a
+list of paths to geometry files [#f1]_. At least one path to a geometry file must
+be given, and for the purposes of this guide this is sufficient.
+
+Let's briefly break down the minimum requirements for each supported transport
+code.
+
+Serpent2
+~~~~~~~~
+Only two additional parameters are needed for Serpent2 coupling:
+
+:ref:`serpent_template_input_file_path_property`
+  A path to a template input file. We describe the structure of this file in :ref:`userguide_templates_serpent`.
+
+:ref:`zaid_convention_property`
+  A string that tells SaltProc what convention to use for the ZAIDs of
+  metastable isotopes. By default, SaltProc uses the ``mcnp`` convention. 
+
+Let's assume that we name our template input file `template.serpent`. If we have
+verified that we are okay to use the default value for ``zaid_convention``, then
+we have:
+
+.. code-block:: json
+
+   {
+       "proc_input_file": "processes.json",
+       "dot_input_file": "graph.dot",
+       "depcode": {
+           "codename": "serpent":
+           "geo_file_paths": ["geometry.ini"],
+           "template_input_file_path": "template.serpent"
+       }
+   }
+
+
+OpenMC
+~~~~~~
+The OpenMC inputs are more complicated. There are two reasons for this:
+
+1. OpenMC uses separate input files for material, geometry, settings, and tally parameters, and uses strict naming for these input files.
+2. Configuring OpenMC's depletion capabilities must be done via the Python API, so what normally would be handled in the template input file must be handled directly in the SaltProc input file.
+
+Fortunately, SaltProc doesn't require users to touch these setting at all if
+they want to use the default options. Users interested in configuring their
+OpenMC depletion settings should advise the `deplete module API`_ as well as the
+`user guide section on depletion`_ to familiarize themselves with the various
+options, then look at the options in :ref:`openmc_depletion_settings_property`.
+
+The ``depcode`` paramter for OpenMC also has the
+:ref:`openmc_template_input_file_path_property` parameter, except it is an
+object that in turn requires two file paths:
+``materials`` for the materials file, and ``settings`` for the settings file.
+There is an additonal required parameter, :ref:`openmc_chain_file_path_property`
+which is a path to an OpenMC depletion chain file. Suppose we prepend
+``template_`` to the names of our OpenMC input files:
+
+.. code-block:: json
+
+   {
+       "proc_input_file": "processes.json",
+       "dot_input_file": "graph.dot",
+       "depcode": {
+           "codename": "openmc":
+           "geo_file_paths": ["geometry.xml"],
+           "template_input_file_path": {
+               "materials": "template_materials.xml",
+               "settings": "template_settings.xml"
+           },
+           "chain_file_path": "chain_simple.xml"
+       }
+   }
+
+
+.. _deplete module API: https://docs.openmc.org/en/stable/pythonapi/deplete.html
+.. _user guide section on depletion: https://docs.openmc.org/en/stable/usersguide/depletion.html
+
+
+Simulation parameters
+---------------------
+Most users will only need to set the ``sim_name`` parameter. In this case,
+we can just pick ``"saltproc_example"``:
+
+.. code-block:: json
+
+   {
+       "proc_input_file": "processes.json",
+       "dot_input_file": "graph.dot",
+       "depcode": {},
+       "simulation": {
+           "sim_name": "saltproc_example"
+       }
+   }
+
+There are two optional parameters that are important to make note of:
+
+:ref:`restart_flag_property`
+  If a simulation fails before all the depletion steps have been calculated, the
+  users can set ``restart_flag`` to ``true`` to run the simulation
+  staring the last completed depletion step
+
+:ref:`adjust_geo_property`
+  Setting ``adjut_geo`` to ``true`` will instruct SaltProc to switch to the next
+  geometry file in ``geo_file_paths`` when :math:`k_\text{eff}` drops below 1.
+
+
+Depletion step parameters
+-------------------------
+In general, depletion parameters other than the defualts (e.g. timestepper
+method, solver used for the Bateman equations, normalization, etc.) should be
+set in the template input file when possible. The rationale for this is that
+these settings have more to do with the internal depletion calculations of the
+transport code than they do with SaltProc execution. The obvious exception to
+this are the delpletion step settings. 
+
+The ``reactor`` parameter provides four parameters to specify depletion settings:
+
+:ref:`power_levels_property`
+  This property describes the power level at each depletion timestep. If a user
+  wants to use the same power level for each depletion timestep, they can pass
+  a singleton list instead and set :ref:`n_depletion_steps_property`.
+
+:ref:`depletion_timesteps_property`
+  This property described the length of each depletion step.
+
+:ref:`timestep_type_property`
+  The value of this property (``cumulative`` or ``stepwise``) tells SaltProc how
+  to interpret ``depletion_timesteps``. If ``cumulative``, each value in
+  ``depletion timesteps`` is assumed to be an absolute time, so the depletion
+  step lengths are the differences between consecutive entries. If
+  ``stepwise``, each value in ``depletion_stimesetps`` is assumed to be the
+  length of each depletion step. ``stepwise`` is the default value for this
+  parameter.
+
+:ref:`timestep_units_property`
+  This parameter specifies the units for ``depletion_timesteps``
+
+
+Let's assume we want to run a depletion simultion for 36 days using 3-day
+timesteps at 1000MW:
+
+.. code-block:: json
+
+   {
+       "proc_input_file": "processes.json",
+       "dot_input_file": "graph.dot",
+       "n_depletion_steps": 12,
+       "depcode": {},
+       "simulation": {
+           "sim_name": "saltproc_example"
+       },
+       "reactor": {
+           "depletion_timesteps": [3],
+           "power_levels": [1000],
+           "timestep_units": "d"
+       }
+   }
+
+
+With this, our input file is finished!
+
+.. rubric:: Footnotes
+
+.. [#f1] As explained in :ref:`methods_geometry_switching`, SaltProc allows a user to provide multiple geometry configurations that are switched to sequentially if that option is enabled and :math:`k_\text{eff}` drops below 1
diff --git a/master/_sources/userguide/parallel.rst.txt b/master/_sources/userguide/parallel.rst.txt
new file mode 100644
index 000000000..53ac3f861
--- /dev/null
+++ b/master/_sources/userguide/parallel.rst.txt
@@ -0,0 +1,38 @@
+.. _userguide_parallel:
+
+Running in Parallel
+===================
+
+If you have installed your :ref:`supported depletion code <supported_codes>`
+with support for shared or distributed memory parallelism (typically via OpenMP
+or MPI, respectively) support, then you can take advantage of that parallelism
+in SaltProc as well. 
+
+.. _parallel_shared:
+
+Shared-Memory Parallelsim
+----------------------------------
+
+To specify the number of theads to use in shared memory parallelism, use the
+``-s`` or ``--threads`` command line argument when calling SaltProc. Note that
+this argument currently does not affect how OpenMC uses shared-memory
+parallelsim, as there is no way to specify the number of threads used
+in depletion. The default behavior is to use all available threads.
+User's should read more about this
+`here <https://docs.openmc.org/en/stable/usersguide/parallel.html#shared-memory-parallelism-openmp>`_.
+
+.. _parallel_distributed:
+
+Distributed-Memory Parallelism
+------------------------------
+
+SaltProc provides the :ref:`mpi_args_property` parameter in the input file to
+give users flexible access to programs like ``mpiexec``. ``mpi_args`` is a list
+of strings that is appended to the subprocess call for each depletion step.
+
+For example, if we are using ``mpiexec``, and want to do a distributed-memory run on
+two nodes, then in our input file, we should have the following parameter:
+
+.. code-block:: json
+
+  "mpi_args": ["mpiexec", "-n", "2"]
diff --git a/master/_sources/userguide/processing_system.rst.txt b/master/_sources/userguide/processing_system.rst.txt
new file mode 100644
index 000000000..0d635c63a
--- /dev/null
+++ b/master/_sources/userguide/processing_system.rst.txt
@@ -0,0 +1,330 @@
+.. _userguide_processing_system:
+
+Creating Processing System Files
+================================
+SaltProc uses two different files to represent a processing system:
+
+  - A ``.json`` file defining processing system components
+
+  - A ``.dot`` file linking the processing system components in a graph
+
+.. note::
+   An API to write the file defining processing system components is in
+   development, but for now it must be written by hand.
+
+Defining Processing System Components
+-------------------------------------
+The processing system components are defined for each material
+that a user want to process. 
+
+.. warning::
+   The of the material in the processing system components file **must** match
+   the name of the corresponding material in the transport code.
+
+We start with an empty JSON file:
+
+.. code-block:: json
+
+   {
+
+   }
+
+Then add the materials we want to process. For simpilicty, let's only consider
+one material, ``fuel``:
+
+.. code-block:: json
+
+   {
+       "fuel": {
+           "extraction_processes": {}
+       } 
+   }
+
+Inside the ``fuel`` key, we define our processing system components via the
+``extraction_processes`` parameter. There are two components that every model
+must have: ``core_outlet`` -- which marks the beginning of the reprocessing
+system -- and ``core_inlet`` -- which marks the end of the reprocessing system.
+Each process has several fields that must be filled by the user:
+
+``capacity``
+  Maximum mass flow rate the process can handle in :math:`g/s`. This parameter is
+  currently unused, but could be useful in the future for more physics-based
+  implementations of reprocessing.
+
+``efficiency``
+  Dictionary mapping element names to extraction efficiencies. These should be empty
+  for the ``core_outlet`` and ``core_inlet`` processes since they represetnt the
+  beginning and end of the processng system.
+
+``mass_flowrate``
+  The mass flowrate of the process in :math:`g/s`.
+
+``volume``
+  The volume of the processing component in :math:`cm^3`.
+
+Let's create ``core_inlet`` and ``core_outlet`` first, assuming a capacity
+of :math:`9.92 \cdot 10^6` :math:`g/s`, and that the mass flowrate is equal to the
+capacity:
+
+.. code-block:: json
+
+   {
+       "fuel": {
+           "extraction_processes": {
+               "core_inlet": {
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+               },
+               "core_outlet":
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+           }
+       }
+   }
+
+Now, let's create three processes that acutally do things: ``gas_separator``,
+which removes Kr, Xe, and H from the fuel, ``nickel_filter``, which removes
+dissolved metals from the fuel, and ``reductive_extractor``, which removes
+fission procducts from the fuel:
+
+.. code-block:: json
+
+   {
+       "fuel": {
+           "extraction_processes": {
+               "core_inlet": {
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+               },
+               "core_outlet":
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+               }
+               "gas_separator": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Kr": 1,
+                       "Xe": 1,
+                       "H": 1
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 10000000
+               },
+               "nickel_filter": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Se": 1,
+                       "Nb": 1,
+                       "Mo": 1,
+                       "Tc": 1,
+                       "Ru": 1,
+                       "Rh": 1,
+                       "Pd": 1,
+                       "Ag": 1,
+                       "Sb": 1,
+                       "Te": 1
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 11
+               },
+               "reductive_extractor": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Pa": 1,
+                       "Y": 0.8904,
+                       "La": 0.8904,
+                       "Ce": 0.8904,
+                       "Pr": 0.8904,
+                       "Nd": 0.8904,
+                       "Pm": 0.8904,
+                       "Sm": 0.8904,
+                       "Gd": 0.8904,
+                       "Eu": 0.2,
+                       "Rb": 0.032,
+                       "Sr": 0.032,
+                       "Cs": 0.032,
+                       "Ba": 0.032,
+                       "Zr": 0.425,
+                       "Cd": 0.425,
+                       "In": 0.425,
+                       "Sn": 0.425,
+                       "Br": 0.842,
+                       "I": 0.842
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 11
+           }
+       }
+   }
+
+In addition to ``extraction_processes``, we can also define ``feeds``, which
+are materials added to the reprocessed material after the processing is
+performed. ``feeds`` require the following parameters:
+
+``density``
+  Density of the material in :math:`g/cm^3`
+
+``volume``
+  Volume of the material in :math:`cm^3`
+
+``mass``
+  Mass of the material in :math:`g`
+
+``comp``
+  A dictionary mapping nuclide names to weight-percent.
+
+In this case, we can add a simple ``fuel_salt`` feed:
+
+.. code-block:: json
+
+   {
+       "fuel": {
+           "extraction_processes": {
+               "core_inlet": {
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+               },
+               "core_outlet":
+                   "capacity": 9920000,
+                   "efficiency": {},
+                   "mass_flowrate": 9920000,
+                   "volume": 0
+               }
+               "gas_separator": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Kr": 1,
+                       "Xe": 1,
+                       "H": 1
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 10000000
+               },
+               "nickel_filter": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Se": 1,
+                       "Nb": 1,
+                       "Mo": 1,
+                       "Tc": 1,
+                       "Ru": 1,
+                       "Rh": 1,
+                       "Pd": 1,
+                       "Ag": 1,
+                       "Sb": 1,
+                       "Te": 1
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 11
+               },
+               "reductive_extractor": {
+                   "capacity": 9920000,
+                   "efficiency": {
+                       "Pa": 1,
+                       "Y": 0.8904,
+                       "La": 0.8904,
+                       "Ce": 0.8904,
+                       "Pr": 0.8904,
+                       "Nd": 0.8904,
+                       "Pm": 0.8904,
+                       "Sm": 0.8904,
+                       "Gd": 0.8904,
+                       "Eu": 0.2,
+                       "Rb": 0.032,
+                       "Sr": 0.032,
+                       "Cs": 0.032,
+                       "Ba": 0.032,
+                       "Zr": 0.425,
+                       "Cd": 0.425,
+                       "In": 0.425,
+                       "Sn": 0.425,
+                       "Br": 0.842,
+                       "I": 0.842
+                   },
+                   "mass_flowrate": 9920000,
+                   "volume": 11
+           },
+           "feeds": {
+               "fuel_salt": {
+                   "density": 3.35,
+                   "volume": 1e8,
+                   "mass": 3.35e
+                   "comp": {
+                       "Li-7": 0.07875361306856505,
+                       "Be-9": 0.022558425114333525,
+                       "Fl-19": 0.4540013117137259,
+                       "Th-232": 0.4446866501033755
+                   }
+               }
+           }
+       }
+   }
+
+Defining the Processing System Graph
+------------------------------------
+As mentioned earlier, processing system graphs must be *acyclic directed* graphs.
+*Directed* means each edge in the graphs connecting nodes has a specific direction
+associated with it, and *acyclic* means there shouldn't be any "loops", that is,
+there should be no way to traverse along an edge that takes you back to a node
+you already visited.
+
+.. _networkx: http://networkx.github.io
+
+SaltProc uses the `networkx`_ package to process graphs, and this is also
+how they should be constructed. We start by importing ``networkx`` and creating
+a ``DiGraph``:
+
+.. code-block:: python
+   
+   import networkx as nx
+   system = nx.DiGraph
+
+Next, we need to add nodes to our graph. Each processing system component we defined
+previously is a node:
+
+.. warning::
+   The names of the nodes **must** match the names of the processing system
+   components.
+
+.. code-block:: python
+
+   nodes = ['core_outlet', 'core_inlet', 'gas_separator', 'nickel_filter', 'reductive_extractor']
+   for node in nodes:
+       system.add_node(node)
+
+Finally, we need to connect the nodes with edges. The graph strucure
+of acyclic directed graphs can get fairly complicated, but for this example
+our graph is going to be a single point-to-point path:
+
+.. code-block:: python
+
+   edges = [('core_outlet', 'gas_separator'),
+            ('gas_separator', 'nickel_filter'),
+            ('nickel_filter', 'reductive_extractor'),
+            ('reductive_extractor', 'core_inlet')]
+   for edge in edges:
+       system.add_edge(*edge)
+
+
+To ensure that our graph is acyclic, we can run
+
+.. code-block:: python
+
+   nx.algorithms.is_directed_acyclic_graph(system)
+
+Finally, we need to export this graph to a ``.dot`` file:
+
+.. code-block:: python
+
+   import networkx.drawing as nxd
+   nxd.nx_pydot.write_dot(system, 'graph.dot')
diff --git a/master/_sources/userguide/scripts.rst.txt b/master/_sources/userguide/scripts.rst.txt
new file mode 100644
index 000000000..f786e85e0
--- /dev/null
+++ b/master/_sources/userguide/scripts.rst.txt
@@ -0,0 +1,23 @@
+.. _userguide_scripts:
+
+Executables and Scripts
+=======================
+
+``saltproc``
+------------
+Once you have a model built (see :ref:`userguide_basics`), you can run SaltProc
+from the command line!
+
+.. code-block:: bash
+
+   python -m saltproc -i saltproc_input.json
+
+
+``saltproc`` accepts the following command line flags:
+
+-s, --threads   Threads to use for shared-memory parallelism
+-h, --help      Show help message
+
+Other scripts
+-------------
+Additional scripts can be found in the :ref:`scripts directroy <https://github.com/arfc/saltproc/tree/master/scripts>.
diff --git a/master/_sources/userguide/templates.rst.txt b/master/_sources/userguide/templates.rst.txt
new file mode 100644
index 000000000..9c862d5ce
--- /dev/null
+++ b/master/_sources/userguide/templates.rst.txt
@@ -0,0 +1,92 @@
+.. _userguide_templates:
+
+Template and Runtime Files
+==========================
+
+As described in :ref:`methods_coupling`, SaltProc uses file-based coupling to
+iterface with depletion solvers. A user provides the template input file(s),
+and SaltProc makes a temporary copy used for running depletion steps that it
+can modify and update as needed.
+
+.. _userguide_templates_serpent:
+
+Serpent 2 Template Files
+------------------------
+A valid Serpent 2 template input file must have at least the following:
+
+  - Burnable materials linked via the `include card`_ The burnable material cards **must** include the ``fix`` option.
+
+  - Non-burnable materials instantiated directly in the file **OR** via an `include card`_ *after* the burnable materials.
+
+  - Neutron particle parameters set via the `set pop card`_.
+
+  - Spontaneous fission yielf sublibray via the `set sfylib card`_
+
+Template input files should also have the following (they are not neccesary if
+the user has used the appropriate environment variables to specify them. See
+the links for each card for more details):
+
+  - The cross section data directory file via the `set acelib card`_.
+
+  - Decay sublibraries set via the `set declib card`_.
+
+  - Delayed fission yield sublibrary via the `set nfylib card`_.
+
+
+So a minimal example assuming the without the use of environment variables would look like:
+
+.. code-block:: cfg 
+
+   % Cross section libraries
+   set acelib /home/user/xsdata/endfb71/endfb71.xsdata
+
+   %% SaltProc will write include card for geometry file here
+
+
+   % Sublibraries
+   set declib /home/user/xsdata/endfb71/endfb71.dec
+   set sfylib /home/user/xsdata/endfb71/endfb71.sfy
+   set nfylib /home/user/xsdata/endfb71/endfb71.nfy
+
+   % Include burnable materials
+   include /home/user/msbr_model/burnable_mats.ini
+
+   % Set neutron population
+   set pop 1000 40 10
+
+
+And the material file containing burnable materials would look like:
+
+.. code-block:: cfg 
+
+   mat uo2 -10.0 vol 0.554 burn 1 fix 82c 900
+       8016.82c  1.0
+       92234.82c 0.0004
+       92235.82c 0.043
+       92238.82c 0.9564
+       92236.82c 0.0002
+
+
+Users looking further cutomize the depletion step should read  Serpent 2's
+`input syntax manual`_, in particular the `set bumode card`_ and the
+`set pcc card`_.
+
+.. _mat card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#mat
+.. _set acelib card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_acelib
+.. _set declib card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_declib
+.. _set sfylib card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_sfylib
+.. _set nfylib card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_nfylib
+.. _include card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#include
+.. _set bumode card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_bumode
+.. _set pcc card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_pcc
+.. _set pop card: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_pop
+.. _input syntax manual: https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual
+
+
+OpenMC Template Files
+---------------------
+Any valid :class:`~openmc.model.Model` object can be exported into a set of
+template files that will work with SaltProc. See the `OpenMC docpages`_ for more
+info.
+
+.. _OpenMC docpages: https://docs.openmc.org/
diff --git a/master/_sources/userguide/troubleshooting.rst.txt b/master/_sources/userguide/troubleshooting.rst.txt
new file mode 100644
index 000000000..5984a8973
--- /dev/null
+++ b/master/_sources/userguide/troubleshooting.rst.txt
@@ -0,0 +1,7 @@
+.. _userguide_troubleshooting:
+
+Troubleshooting
+===============
+
+Many problems users have are related to the configuration of their transport
+code. If a SaltProc simulation terminates early, this is typcially the case.
diff --git a/master/_static/pygments.css b/master/_static/pygments.css
index 691aeb82d..f227e5c6e 100644
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diff --git a/master/src/saltproc.version.html b/master/api/app.html
similarity index 61%
rename from master/src/saltproc.version.html
rename to master/api/app.html
index ffd84f82b..86cc4641e 100644
--- a/master/src/saltproc.version.html
+++ b/master/api/app.html
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.version module &mdash; Saltproc 0.5.dev documentation</title>
+  <title>saltproc.app &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
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@@ -44,10 +44,12 @@
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 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
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@@ -65,9 +67,9 @@
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   <ul class="wy-breadcrumbs">
       <li><a href="../index.html" class="icon icon-home"></a></li>
-      <li class="breadcrumb-item active">saltproc.version module</li>
+      <li class="breadcrumb-item active"><code class="xref py py-mod docutils literal notranslate"><span class="pre">saltproc.app</span></code></li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/src/saltproc.version.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/api/app.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -75,8 +77,32 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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-  <section id="module-saltproc.version">
-<span id="saltproc-version-module"></span><h1>saltproc.version module<a class="headerlink" href="#module-saltproc.version" title="Permalink to this heading">¶</a></h1>
+  <section id="saltproc-app">
+<h1><code class="xref py py-mod docutils literal notranslate"><span class="pre">saltproc.app</span></code><a class="headerlink" href="#saltproc-app" title="Permalink to this heading">¶</a></h1>
+<p><code class="docutils literal notranslate"><span class="pre">app.py</span></code> contains all the functions needed to actually run the code.</p>
+<section id="functions">
+<h2>Functions<a class="headerlink" href="#functions" title="Permalink to this heading">¶</a></h2>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/app.run.html#app.run" title="app.run"><code class="xref py py-obj docutils literal notranslate"><span class="pre">app.run</span></code></a></p></td>
+<td><p>Inititializes main run</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/app.read_main_input.html#app.read_main_input" title="app.read_main_input"><code class="xref py py-obj docutils literal notranslate"><span class="pre">app.read_main_input</span></code></a></p></td>
+<td><p>Reads main SaltProc input file (json format).</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/app.reprocess_materials.html#app.reprocess_materials" title="app.reprocess_materials"><code class="xref py py-obj docutils literal notranslate"><span class="pre">app.reprocess_materials</span></code></a></p></td>
+<td><p>Applies extraction reprocessing scheme to burnable materials.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/app.refill_materials.html#app.refill_materials" title="app.refill_materials"><code class="xref py py-obj docutils literal notranslate"><span class="pre">app.refill_materials</span></code></a></p></td>
+<td><p>Makes up material loss in removal processes by adding fresh fuel.</p></td>
+</tr>
+</tbody>
+</table>
+</section>
 </section>
 
 
@@ -108,14 +134,9 @@
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-    <dl>
-      <dt>Tags</dt>
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-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="saltproc.version.html">master</a></dd>
+      <dd><a href="app.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/master/api/generated/app.html b/master/api/generated/app.html
new file mode 100644
index 000000000..3983cd2aa
--- /dev/null
+++ b/master/api/generated/app.html
@@ -0,0 +1,173 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>app &mdash; Saltproc 0.5.dev documentation</title>
+      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
+  <!--[if lt IE 9]>
+    <script src="../../_static/js/html5shiv.min.js"></script>
+  <![endif]-->
+  
+        <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
+        <script src="../../_static/jquery.js"></script>
+        <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
+        <script src="../../_static/doctools.js"></script>
+        <script src="../../_static/sphinx_highlight.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="saltproc.Simulation" href="saltproc.Simulation.html" />
+    <link rel="prev" title="saltproc.Separator" href="saltproc.Separator.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+            <a href="../../index.html" class="icon icon-home"> Saltproc
+          </a>
+              <div class="version">
+                0.5.dev
+              </div>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">SaltProc API</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../index.html#depeletion-code-interfaces">Depeletion code interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#reprocessing">Reprocessing</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#running-the-simulation">Running the simulation</a><ul class="current">
+<li class="toctree-l3 current"><a class="current reference internal" href="#">app</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#results">Results</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">Saltproc</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">SaltProc API</a></li>
+      <li class="breadcrumb-item active">app</li>
+      <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/app.rst.txt" rel="nofollow"> View page source</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="module-app">
+<span id="app"></span><h1>app<a class="headerlink" href="#module-app" title="Permalink to this heading">¶</a></h1>
+<p class="rubric">Functions</p>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_extraction_process_paths</span></code>(dot_file)</p></td>
+<td><p>Reads directed graph that describes fuel reprocessing system structure from a <cite>*.dot</cite> file.</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_extraction_processes</span></code>(process_file)</p></td>
+<td><p>Parses <code class="docutils literal notranslate"><span class="pre">extraction_processes</span></code> objects from the <cite>.json</cite> file describing processing system objects.</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_feeds</span></code>(process_file)</p></td>
+<td><p>Parses <code class="docutils literal notranslate"><span class="pre">feed</span></code> objects from <cite>.json</cite> file describing processing system objects.</p></td>
+</tr>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">parse_arguments</span></code>()</p></td>
+<td><p>Parses arguments from command line.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="app.read_main_input.html#app.read_main_input" title="app.read_main_input"><code class="xref py py-obj docutils literal notranslate"><span class="pre">read_main_input</span></code></a>(main_inp_file)</p></td>
+<td><p>Reads main SaltProc input file (json format).</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="app.refill_materials.html#app.refill_materials" title="app.refill_materials"><code class="xref py py-obj docutils literal notranslate"><span class="pre">refill_materials</span></code></a>(mats, extracted_mass, ...)</p></td>
+<td><p>Makes up material loss in removal processes by adding fresh fuel.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="app.reprocess_materials.html#app.reprocess_materials" title="app.reprocess_materials"><code class="xref py py-obj docutils literal notranslate"><span class="pre">reprocess_materials</span></code></a>(mats, process_file, dot_file)</p></td>
+<td><p>Applies extraction reprocessing scheme to burnable materials.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="app.run.html#app.run" title="app.run"><code class="xref py py-obj docutils literal notranslate"><span class="pre">run</span></code></a>()</p></td>
+<td><p>Inititializes main run</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="saltproc.Separator.html" class="btn btn-neutral float-left" title="saltproc.Separator" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="saltproc.Simulation.html" class="btn btn-neutral float-right" title="saltproc.Simulation" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p></p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  
+<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+  <span class="rst-current-version" data-toggle="rst-current-version">
+    <span class="fa fa-book"> Other Versions</span>
+    v: master
+    <span class="fa fa-caret-down"></span>
+  </span>
+  <div class="rst-other-versions">
+    <dl>
+      <dt>Branches</dt>
+      <dd><a href="app.html">master</a></dd>
+    </dl>
+  </div>
+</div><script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/v0.3.0/_modules/saltproc/reactor.html b/master/api/generated/app.read_main_input.html
similarity index 50%
rename from v0.3.0/_modules/saltproc/reactor.html
rename to master/api/generated/app.read_main_input.html
index 8306fa480..a13c88c87 100644
--- a/v0.3.0/_modules/saltproc/reactor.html
+++ b/master/api/generated/app.read_main_input.html
@@ -1,9 +1,10 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" >
 <head>
-  <meta charset="utf-8" />
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.reactor &mdash; Saltproc  documentation</title>
+  <title>app.read_main_input &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -28,6 +29,9 @@
         <div class="wy-side-nav-search" >
             <a href="../../index.html" class="icon icon-home"> Saltproc
           </a>
+              <div class="version">
+                0.5.dev
+              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" />
@@ -40,7 +44,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -58,9 +67,9 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../../index.html" class="icon icon-home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">saltproc.reactor</li>
+      <li class="breadcrumb-item active">app.read_main_input</li>
       <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/app.read_main_input.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -68,37 +77,38 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
-<div class="viewcode-block" id="Reactor"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor">[docs]</a><span></span><span class="k">class</span> <span class="nc">Reactor</span> <span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Class contains information about current state of the reactor.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Reactor.__init__"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-                 <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-                 <span class="n">power_levels</span><span class="o">=</span><span class="p">[</span><span class="mf">0.0</span><span class="p">],</span>
-                 <span class="n">depl_hist</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the class.</span>
+  <section id="app-read-main-input">
+<h1>app.read_main_input<a class="headerlink" href="#app-read-main-input" title="Permalink to this heading">¶</a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="app.read_main_input">
+<span class="sig-prename descclassname"><span class="pre">app.</span></span><span class="sig-name descname"><span class="pre">read_main_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">main_inp_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/app.html#read_main_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#app.read_main_input" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads main SaltProc input file (json format).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>main_inp_file</strong> (<em>str</em>) – Path to SaltProc main input file and name of this file.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><ul class="simple">
+<li><p><strong>input_path</strong> (<em>Path</em>) – Path to main input file</p></li>
+<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
+<li><p><strong>dot_file</strong> (<em>str</em>) – Path to the <cite>.dot</cite> describing the fuel reprocessing paths.</p></li>
+<li><p><strong>mpi_args</strong> (<em>list of str</em>) – Arguments for running simulations on supercomputers using mpiexec or
+similar programs.</p></li>
+<li><p><strong>rebuild_saltproc_results</strong> (<em>bool</em>) – Flag to indicate whether or not to rebuild SaltProc results file
+from existing depcode results</p></li>
+<li><p><strong>run_without_reprocessing</strong> (<em>bool</em>) – Flag to indicate whether or not to run the depletion code in
+SaltProc without applying the reprocessing system.</p></li>
+<li><p><strong>object_inputs</strong> (<em>3-tuple of dict</em>) – tuple containing the inputs for constructing the
+<a class="reference internal" href="saltproc.Depcode.html#saltproc.Depcode" title="saltproc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a>, <a class="reference internal" href="saltproc.Simulation.html#saltproc.Simulation" title="saltproc.Simulation"><code class="xref py py-class docutils literal notranslate"><span class="pre">Simulation</span></code></a>, and
+<code class="xref py py-class docutils literal notranslate"><span class="pre">Reactor</span></code> objects.</p></li>
+</ul>
+</p>
+</dd>
+</dl>
+</dd></dl>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            Total volume of the reactor core (:math:`cm^3`).</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            Total mass flowrate through reactor (g/s).</span>
-<span class="sd">        power_levels : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Normalized power level for each depletion step (W).</span>
-<span class="sd">        depl_hist : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Cumulative depletion time (d).</span>
+</section>
 
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">volume</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">power_levels</span> <span class="o">=</span> <span class="n">power_levels</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">depl_hist</span> <span class="o">=</span> <span class="n">depl_hist</span></div></div>
-</pre></div>
 
            </div>
           </div>
@@ -124,18 +134,13 @@ <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
 <div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
   <span class="rst-current-version" data-toggle="rst-current-version">
     <span class="fa fa-book"> Other Versions</span>
-    v: v0.3.0
+    v: master
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="reactor.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="../../../master/index.html">master</a></dd>
+      <dd><a href="app.read_main_input.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/master/api/generated/app.refill_materials.html b/master/api/generated/app.refill_materials.html
new file mode 100644
index 000000000..1e9e7490c
--- /dev/null
+++ b/master/api/generated/app.refill_materials.html
@@ -0,0 +1,165 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>app.refill_materials &mdash; Saltproc 0.5.dev documentation</title>
+      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
+  <!--[if lt IE 9]>
+    <script src="../../_static/js/html5shiv.min.js"></script>
+  <![endif]-->
+  
+        <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
+        <script src="../../_static/jquery.js"></script>
+        <script src="../../_static/underscore.js"></script>
+        <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
+        <script src="../../_static/doctools.js"></script>
+        <script src="../../_static/sphinx_highlight.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+            <a href="../../index.html" class="icon icon-home"> Saltproc
+          </a>
+              <div class="version">
+                0.5.dev
+              </div>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <ul>
+<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">Saltproc</a>
+      </nav>
+
+      <div class="wy-nav-content">
+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../../index.html" class="icon icon-home"></a></li>
+      <li class="breadcrumb-item active">app.refill_materials</li>
+      <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/app.refill_materials.rst.txt" rel="nofollow"> View page source</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="app-refill-materials">
+<h1>app.refill_materials<a class="headerlink" href="#app-refill-materials" title="Permalink to this heading">¶</a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="app.refill_materials">
+<span class="sig-prename descclassname"><span class="pre">app.</span></span><span class="sig-name descname"><span class="pre">refill_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extracted_mass</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_streams</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/app.html#refill_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#app.refill_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Makes up material loss in removal processes by adding fresh fuel.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – Dicitionary mapping material names to
+<a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a> objects that have already
+been reprocessed by <cite>reprocess_materials</cite>.</p></li>
+<li><p><strong>extracted_mass</strong> (<em>dict</em><em> of </em><em>str to float</em>) – Dictionary mapping material names to the mass in [g] of that material
+removed via reprocessing.</p></li>
+<li><p><strong>waste_streams</strong> (<em>dict</em><em> of </em><em>str to dict</em>) – <p>Dictionary mapping material names to waste streams from reprocessing</p>
+<blockquote>
+<div><dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Material name.</p>
+</dd>
+</dl>
+</div></blockquote>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping waste stream names to
+<a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a> objects representing
+waste streams.</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>waste_streams</strong> – Superset of the input parameter <cite>waste_streams</cite>. Dictionary has
+keys for feed streams that map to <code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> objects
+representing those material feed streams.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>dict of str to dict</p>
+</dd>
+</dl>
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p></p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+    provided by <a href="https://readthedocs.org">Read the Docs</a>.
+   
+
+</footer>
+        </div>
+      </div>
+    </section>
+  </div>
+  
+<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+  <span class="rst-current-version" data-toggle="rst-current-version">
+    <span class="fa fa-book"> Other Versions</span>
+    v: master
+    <span class="fa fa-caret-down"></span>
+  </span>
+  <div class="rst-other-versions">
+    <dl>
+      <dt>Branches</dt>
+      <dd><a href="app.refill_materials.html">master</a></dd>
+    </dl>
+  </div>
+</div><script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/master/_modules/saltproc/reactor.html b/master/api/generated/app.reprocess_materials.html
similarity index 50%
rename from master/_modules/saltproc/reactor.html
rename to master/api/generated/app.reprocess_materials.html
index 357fa33a2..cd79fa49a 100644
--- a/master/_modules/saltproc/reactor.html
+++ b/master/api/generated/app.reprocess_materials.html
@@ -1,9 +1,10 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" >
 <head>
-  <meta charset="utf-8" />
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.reactor &mdash; Saltproc 0.5.dev documentation</title>
+  <title>app.reprocess_materials &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -43,10 +44,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -64,9 +67,9 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../../index.html" class="icon icon-home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">saltproc.reactor</li>
+      <li class="breadcrumb-item active">app.reprocess_materials</li>
       <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/app.reprocess_materials.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -74,45 +77,44 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
-<div class="viewcode-block" id="Reactor"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor">[docs]</a><span></span><span class="k">class</span> <span class="nc">Reactor</span> <span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Class contains information about current state of the reactor.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Reactor.__init__"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-                 <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-                 <span class="n">power_levels</span><span class="o">=</span><span class="p">[</span><span class="mf">0.0</span><span class="p">],</span>
-                 <span class="n">depletion_timesteps</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span>
-                 <span class="n">timestep_type</span><span class="o">=</span><span class="s1">&#39;stepwise&#39;</span><span class="p">,</span>
-                 <span class="n">timestep_units</span><span class="o">=</span><span class="s1">&#39;d&#39;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the class.</span>
+  <section id="app-reprocess-materials">
+<h1>app.reprocess_materials<a class="headerlink" href="#app-reprocess-materials" title="Permalink to this heading">¶</a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="app.reprocess_materials">
+<span class="sig-prename descclassname"><span class="pre">app.</span></span><span class="sig-name descname"><span class="pre">reprocess_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dot_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/app.html#reprocess_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#app.reprocess_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Applies extraction reprocessing scheme to burnable materials.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – Dictionary that contains <a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a>
+objects with burnable material data right after irradiation in the
+core.</p></li>
+<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
+<li><p><strong>dot_file</strong> (<em>str</em>) – Path to the <cite>.dot</cite> describing the fuel reprocessing paths.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><ul>
+<li><p><strong>waste_streams</strong> (<em>dict of str to dict</em>) – Dictionary mapping material names to waste streams.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Material name.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping waste stream names to
+<a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a>
+objects representing waste streams.</p>
+</dd>
+</dl>
+</li>
+<li><p><strong>extracted_mass</strong> (<em>dict of str to float</em>) – Dictionary mapping material names to the mass in [g] of that material
+removed via reprocessing.</p></li>
+</ul>
+</p>
+</dd>
+</dl>
+</dd></dl>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            Total volume of the reactor core (:math:`cm^3`).</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            Total mass flowrate through reactor core (g/s).</span>
-<span class="sd">        power_levels : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Normalized power level for each depletion step (W).</span>
-<span class="sd">        depletion_timesteps : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Array of timesteps.</span>
-<span class="sd">        timestep_type: str</span>
-<span class="sd">            &#39;cumulative&#39;, &#39;stepwise&#39;.</span>
-<span class="sd">        timestep_units : str</span>
-<span class="sd">            Timestep units</span>
+</section>
 
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">volume</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">power_levels</span> <span class="o">=</span> <span class="n">power_levels</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">depletion_timesteps</span> <span class="o">=</span> <span class="n">depletion_timesteps</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">timestep_units</span> <span class="o">=</span> <span class="n">timestep_units</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">timestep_type</span> <span class="o">=</span> <span class="n">timestep_type</span></div></div>
-</pre></div>
 
            </div>
           </div>
@@ -142,14 +144,9 @@ <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="reactor.html">master</a></dd>
+      <dd><a href="app.reprocess_materials.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/v0.4.0/_modules/saltproc/reactor.html b/master/api/generated/app.run.html
similarity index 55%
rename from v0.4.0/_modules/saltproc/reactor.html
rename to master/api/generated/app.run.html
index a3469eb41..c6ec5bf1b 100644
--- a/v0.4.0/_modules/saltproc/reactor.html
+++ b/master/api/generated/app.run.html
@@ -1,9 +1,10 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" >
 <head>
-  <meta charset="utf-8" />
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.reactor &mdash; Saltproc 0.4.0 documentation</title>
+  <title>app.run &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -29,7 +30,7 @@
             <a href="../../index.html" class="icon icon-home"> Saltproc
           </a>
               <div class="version">
-                0.4.0
+                0.5.dev
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
@@ -43,9 +44,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -63,9 +67,9 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../../index.html" class="icon icon-home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">saltproc.reactor</li>
+      <li class="breadcrumb-item active">app.run</li>
       <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/app.run.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -73,37 +77,16 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
-<div class="viewcode-block" id="Reactor"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor">[docs]</a><span></span><span class="k">class</span> <span class="nc">Reactor</span> <span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    Class contains information about current state of the reactor.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Reactor.__init__"><a class="viewcode-back" href="../../src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-                 <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-                 <span class="n">power_levels</span><span class="o">=</span><span class="p">[</span><span class="mf">0.0</span><span class="p">],</span>
-                 <span class="n">dep_step_length_cumulative</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the class.</span>
+  <section id="app-run">
+<h1>app.run<a class="headerlink" href="#app-run" title="Permalink to this heading">¶</a></h1>
+<dl class="py function">
+<dt class="sig sig-object py" id="app.run">
+<span class="sig-prename descclassname"><span class="pre">app.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/app.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#app.run" title="Permalink to this definition">¶</a></dt>
+<dd><p>Inititializes main run</p>
+</dd></dl>
 
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            Total volume of the reactor core (:math:`cm^3`).</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            Total mass flowrate through reactor core (g/s).</span>
-<span class="sd">        power_levels : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Normalized power level for each depletion step (W).</span>
-<span class="sd">        dep_step_length_cumulative : array [:math:`N_{steps}` x1]</span>
-<span class="sd">            Cumulative depletion time (d).</span>
+</section>
 
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">volume</span> <span class="o">=</span> <span class="n">volume</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">power_levels</span> <span class="o">=</span> <span class="n">power_levels</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span> <span class="o">=</span> <span class="n">dep_step_length_cumulative</span></div></div>
-</pre></div>
 
            </div>
           </div>
@@ -129,18 +112,13 @@ <h1>Source code for saltproc.reactor</h1><div class="highlight"><pre>
 <div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
   <span class="rst-current-version" data-toggle="rst-current-version">
     <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
+    v: master
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="reactor.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="../../../master/index.html">master</a></dd>
+      <dd><a href="app.run.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/master/api/generated/saltproc.Depcode.html b/master/api/generated/saltproc.Depcode.html
new file mode 100644
index 000000000..02dd7dd57
--- /dev/null
+++ b/master/api/generated/saltproc.Depcode.html
@@ -0,0 +1,366 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>saltproc.Depcode &mdash; Saltproc 0.5.dev documentation</title>
+      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
+      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
+  <!--[if lt IE 9]>
+    <script src="../../_static/js/html5shiv.min.js"></script>
+  <![endif]-->
+  
+        <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
+        <script src="../../_static/jquery.js"></script>
+        <script src="../../_static/underscore.js"></script>
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+        <script src="../../_static/sphinx_highlight.js"></script>
+    <script src="../../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="saltproc.SerpentDepcode" href="saltproc.SerpentDepcode.html" />
+    <link rel="prev" title="SaltProc API" href="../index.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+            <a href="../../index.html" class="icon icon-home"> Saltproc
+          </a>
+              <div class="version">
+                0.5.dev
+              </div>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">SaltProc API</a><ul class="current">
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#depeletion-code-interfaces">Depeletion code interfaces</a><ul class="current">
+<li class="toctree-l3 current"><a class="current reference internal" href="#">saltproc.Depcode</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#saltproc.Depcode"><code class="docutils literal notranslate"><span class="pre">Depcode</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="saltproc.SerpentDepcode.html">saltproc.SerpentDepcode</a></li>
+<li class="toctree-l3"><a class="reference internal" href="saltproc.OpenMCDepcode.html">saltproc.OpenMCDepcode</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#reprocessing">Reprocessing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#running-the-simulation">Running the simulation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#results">Results</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../../io_formats/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../../index.html">Saltproc</a>
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+      <li><a href="../../index.html" class="icon icon-home"></a></li>
+          <li class="breadcrumb-item"><a href="../index.html">SaltProc API</a></li>
+      <li class="breadcrumb-item active">saltproc.Depcode</li>
+      <li class="wy-breadcrumbs-aside">
+            <a href="../../_sources/api/generated/saltproc.Depcode.rst.txt" rel="nofollow"> View page source</a>
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="saltproc-depcode">
+<h1>saltproc.Depcode<a class="headerlink" href="#saltproc-depcode" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.Depcode">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode" title="Permalink to this definition">¶</a></dt>
+<dd><p>Abstract interface for running depletion steps.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
+<li><p><strong>codename</strong> (<em>str</em>) – Name of depletion code.</p></li>
+<li><p><strong>exec_path</strong> (<em>str</em>) – Path to depletion code executable.</p></li>
+<li><p><strong>template_input_file_path</strong> (<em>str</em><em> or </em><em>dict</em><em> of </em><em>str to str</em>) – Path(s) to depletion code input file(s), or a dictionary where
+the input type (e.g. material, geometry, settings, etc.) as a
+string are keys, and the path to the input file are values.
+Type depends on depletion code in use.</p></li>
+<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
+List of <cite>str</cite> if reactivity control by
+switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Variables</dt>
+<dd class="field-even"><ul class="simple">
+<li><p><strong>neutronics_parameters</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds depletion step neutronics parameters. Parameter names are keys
+and parameter values are values.</p></li>
+<li><p><strong>step_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds depletion code depletion step metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>depcode_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds depletion code simulation metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>runtime_inputfile</strong> (<em>str</em>) – Path to input file used to run depletion step.</p></li>
+<li><p><strong>runtime_matfile</strong> (<em>str</em>) – Path to material file containing burnable materials used to
+run depletion step.</p></li>
+<li><p><strong>npop</strong> (<em>int</em>) – Size of neutron population per cycle</p></li>
+<li><p><strong>active_cycles</strong> (<em>int</em>) – Number of active cycles.</p></li>
+<li><p><strong>inactive_cycles</strong> (<em>int</em>) – Number of inactive cycles.</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.name_to_nuclide_code">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">name_to_nuclide_code</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nucname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.name_to_nuclide_code"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.name_to_nuclide_code" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts depcode nuclide name to ZA nuclide code</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nucname</strong> (<em>str</em>) – Nuclide namce</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – ZA nuclide code</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.nuclide_code_to_name">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">nuclide_code_to_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.nuclide_code_to_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.nuclide_code_to_name" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts depcode nuclide code to symbolic nuclide name.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Nuclide code</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – Symbolic nuclide name (<cite>Am242m1</cite>).</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.preserve_simulation_files">
+<span class="sig-name descname"><span class="pre">preserve_simulation_files</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.preserve_simulation_files"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.preserve_simulation_files" title="Permalink to this definition">¶</a></dt>
+<dd><p>Move simulation input and output files
+to unique a directory</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>step_idx</strong> (<em>int</em>) – </p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.read_depcode_metadata">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_depcode_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.read_depcode_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.read_depcode_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Read depletion code metadata, and store it in the <a class="reference internal" href="#saltproc.Depcode" title="saltproc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a>
+object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">depcode_metadata</span></code> attribute</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.read_depleted_materials">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads depleted materials from the depletion step results
+and returns a dictionary containing them.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
+depletion step. Otherwise, the function reads data at the
+beginning of the depletion step.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding material composition and properties.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>dict of str to Materialflow</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.read_neutronics_parameters">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads depletion code’s depletion step neutronics parameters and
+stores them in <a class="reference internal" href="#saltproc.Depcode" title="saltproc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a> object’s
+<code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.read_plaintext_file">
+<span class="sig-name descname"><span class="pre">read_plaintext_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.read_plaintext_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.read_plaintext_file" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads the content of a plaintext file for use by other methods.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>file_path</strong> (<em>str</em>) – Path to file.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>file_lines</strong> – File lines.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>list of str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.read_step_metadata">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads depletion step metadata and stores it in the
+<a class="reference internal" href="#saltproc.Depcode" title="saltproc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.rebuild_simulation_files">
+<span class="sig-name descname"><span class="pre">rebuild_simulation_files</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.rebuild_simulation_files"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.rebuild_simulation_files" title="Permalink to this definition">¶</a></dt>
+<dd><p>Move simulation input and output files
+from unique directory to runtime directory</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>step_idx</strong> (<em>int</em>) – </p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.run_depletion_step">
+<span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">args</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
+<dd><p>Runs a depletion step as a subprocess with the given parameters.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mpi_args</strong> (<em>list</em><em> of </em><em>str</em>) – Arguments for running simulations on supercomputers using
+<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p></li>
+<li><p><strong>args</strong> (<em>list</em><em> of </em><em>str</em>) – Arguments for running depletion step.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.switch_to_next_geometry">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Changes the geometry used in the depletion code simulation to the
+next geometry file in <code class="docutils literal notranslate"><span class="pre">geo_file_paths</span></code></p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.update_depletable_materials">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Update material file with reprocessed material compositions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding composition and properties.</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Depcode.write_runtime_input">
+<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/depcode.html#Depcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Depcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
+<dd><p>Write input file(s) for running depletion step</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>reactor</strong> (<em>Reactor</em>) – Contains information about power load curve and cumulative
+depletion time for the integration test.</p></li>
+<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
+<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#depeletion-code-interfaces">Depeletion code interfaces</a></li>
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+             
+  <section id="saltproc-materialflow">
+<h1>saltproc.Materialflow<a class="headerlink" href="#saltproc-materialflow" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.Materialflow">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Materialflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">comp_is_density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/materialflow.html#Materialflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Materialflow" title="Permalink to this definition">¶</a></dt>
+<dd><p>Class contains information about burnable material flow. Child class of
+<code class="xref py py-class docutils literal notranslate"><span class="pre">openmc.Material</span></code>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>comp</strong> (<em>dict</em><em> of </em><em>str to float</em>) – Dictionary mapping element or nuclide names to their weight
+percent.</p></li>
+<li><p><strong>density</strong> (<em>float</em>) – Material density [g/cm^3]</p></li>
+<li><p><strong>volume</strong> (<em>float</em>) – Material volume [cm^3]</p></li>
+<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow [g/s]</p></li>
+<li><p><strong>void_frac</strong> (<em>float</em>) – void fraction in the material [%]</p></li>
+<li><p><strong>burnup</strong> (<em>float</em>) – material burnup at the end of depletion step [MWd/kgU]</p></li>
+<li><p><strong>kwargs</strong> (<em>dict</em>) – Key-word arguemnts for <code class="xref py py-class docutils literal notranslate"><span class="pre">openmc.Material</span></code></p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Materialflow.get_mass">
+<span class="sig-name descname"><span class="pre">get_mass</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">openmc</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/materialflow.html#Materialflow.get_mass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Materialflow.get_mass" title="Permalink to this definition">¶</a></dt>
+<dd><p>Return mass of one or all nuclides.</p>
+<p>Note that this method requires that the <code class="xref py py-attr docutils literal notranslate"><span class="pre">Material.volume</span></code> has
+already been set.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuclides</strong> (<em>str</em><em>, </em><em>optional</em>) – Nuclide for which mass is desired. If not specified, the density
+for the entire material is given.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>Mass of the nuclide/material in [g]</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Materialflow.print_attr">
+<span class="sig-name descname"><span class="pre">print_attr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/materialflow.html#Materialflow.print_attr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Materialflow.print_attr" title="Permalink to this definition">¶</a></dt>
+<dd><p>Prints various attributes of Materialflow object.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Materialflow.replace_components">
+<span class="sig-name descname"><span class="pre">replace_components</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">comp_is_density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/materialflow.html#Materialflow.replace_components"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Materialflow.replace_components" title="Permalink to this definition">¶</a></dt>
+<dd><p>Replace and normalize the material composition</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>comp</strong> (<em>dict</em><em> of </em><em>str to float</em>) – Dictionary mapping element or nuclide names to their atom or weight
+percent.</p></li>
+<li><p><strong>percent_type</strong> (<em>{'wo'</em><em>, </em><em>'ao'}</em>) – ‘ao’ for atom percenta nd ‘wo’ for weight percent.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Materialflow.scale_matflow">
+<span class="sig-name descname"><span class="pre">scale_matflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">f</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/materialflow.html#Materialflow.scale_matflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Materialflow.scale_matflow" title="Permalink to this definition">¶</a></dt>
+<dd><p>Returns nuclide vector dictionary, obtained from object attrs and
+then scaled by factor.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>f</strong> (<em>float</em>) – Scaling factor.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><p><strong>new_mat_comp</strong> – Nuclide component dictionary of relative mass.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The keys are preserved from PyNE Material (integers
+representing nuclides in id-form).</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>factor f.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>dict of int to float</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
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+  <section id="saltproc-openmcdepcode">
+<h1>saltproc.OpenMCDepcode<a class="headerlink" href="#saltproc-openmcdepcode" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">OpenMCDepcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_settings</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chain_file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode" title="Permalink to this definition">¶</a></dt>
+<dd><p>Interface for running depletion steps in OpenMC, as well as obtaining
+depletion step results.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
+<li><p><strong>exec_path</strong> (<em>str</em>) – Path to OpenMC depletion script.</p></li>
+<li><p><strong>template_input_file_path</strong> (<em>dict</em><em> of </em><em>str to str</em>) – Path to user input files (<code class="docutils literal notranslate"><span class="pre">.xml</span></code> file for geometry,
+material, and settings) for OpenMC. File type as strings
+are keys (e.g. ‘geometry’, ‘settings’, ‘material’), and
+file path as strings are values.</p></li>
+<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – <dl class="simple">
+<dt>Path to file that contains the reactor geometry.</dt><dd><p>List of <cite>str</cite> if reactivity control by
+switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p>
+</dd>
+<dt>depletion_settings<span class="classifier">dict</span></dt><dd><p>Keyword arguments to pass to <code class="xref py py-func docutils literal notranslate"><span class="pre">openmc.model.deplete()</span></code>.</p>
+</dd>
+<dt>chain_file_path<span class="classifier">str</span></dt><dd><p>Path to depletion chain file</p>
+</dd>
+</dl>
+</p></li>
+</ul>
+</dd>
+<dt class="field-even">Variables</dt>
+<dd class="field-even"><ul class="simple">
+<li><p><strong>neutronics_parameters</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds OpenMC depletion step neutronics parameters. Parameter names are
+keys and parameter values are values.</p></li>
+<li><p><strong>step_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds OpenMC depletion step metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>depcode_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds OpenMC simulation metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>runtime_inputfile</strong> (<em>dict</em><em> of </em><em>str to str</em>) – Paths to OpenMC input files used to run depletion step. Contains neutron
+settings and geometry.</p></li>
+<li><p><strong>runtime_matfile</strong> (<em>str</em>) – Path to OpenMC material file containing materials used to
+run depletion step, and modified after fuel reprocessing.</p></li>
+<li><p><strong>npop</strong> (<em>int</em>) – Size of neutron population per cycle</p></li>
+<li><p><strong>active_cycles</strong> (<em>int</em>) – Number of active cycles.</p></li>
+<li><p><strong>inactive_cycles</strong> (<em>int</em>) – Number of inactive cycles.</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.name_to_nuclide_code">
+<span class="sig-name descname"><span class="pre">name_to_nuclide_code</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nucname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.name_to_nuclide_code"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.name_to_nuclide_code" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts depcode nuclide name to ZA nuclide code</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nucname</strong> (<em>str</em>) – Nuclide namce</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – ZA nuclide code</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.nuclide_code_to_name">
+<span class="sig-name descname"><span class="pre">nuclide_code_to_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.nuclide_code_to_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.nuclide_code_to_name" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts depcode nuclide code to symbolic nuclide name.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Nuclide code</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – Symbolic nuclide name (<cite>Am242m1</cite>).</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.read_depcode_metadata">
+<span class="sig-name descname"><span class="pre">read_depcode_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_depcode_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.read_depcode_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads OpenMC’s depletion step metadata and stores it in the
+<a class="reference internal" href="#saltproc.OpenMCDepcode" title="saltproc.OpenMCDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.read_depleted_materials">
+<span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads depleted materials from OpenMC’s <cite>depletion_results.h5</cite> file
+and returns a dictionary with a <a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object for each
+depleted material.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
+depletion step. Otherwise, the function reads data at the
+beginning of the depletion step.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding composition and properties.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>dict of str to Materialflow</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.read_neutronics_parameters">
+<span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads OpenMC depletion step neutronics parameters and stores them
+in <a class="reference internal" href="#saltproc.OpenMCDepcode" title="saltproc.OpenMCDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code>
+attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.read_step_metadata">
+<span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads OpenMC’s depletion step metadata and stores it in the
+<a class="reference internal" href="#saltproc.OpenMCDepcode" title="saltproc.OpenMCDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.run_depletion_step">
+<span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threads</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
+<dd><p>Runs a depletion step in OpenMC as a subprocess</p>
+<dl class="simple">
+<dt>mpi_args<span class="classifier">list of str</span></dt><dd><p>Arguments for running simulations on supercomputers using
+<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p>
+</dd>
+<dt>threads<span class="classifier">int</span></dt><dd><p>Threads to use for shared-memory parallelism</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.switch_to_next_geometry">
+<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Switches the geometry file for the OpenMC depletion simulation to
+the next geometry file in <cite>geo_file_paths</cite>.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.update_depletable_materials">
+<span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Updates material file with reprocessed material compositions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding composition and properties.</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.write_depletion_settings">
+<span class="sig-name descname"><span class="pre">write_depletion_settings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_depletion_settings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.write_depletion_settings" title="Permalink to this definition">¶</a></dt>
+<dd><p>Write the depeletion settings for the <code class="docutils literal notranslate"><span class="pre">openmc.deplete</span></code>
+module.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>reactor</strong> (<em>Reactor</em>) – Contains information about power load curve and cumulative
+depletion time for the integration test.</p></li>
+<li><p><strong>step_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.write_runtime_input">
+<span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
+<dd><p>Write OpenMC runtime input files for running depletion step.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>reactor</strong> (<em>Reactor</em>) – Contains information about power load curve and cumulative
+depletion time for the integration test.</p></li>
+<li><p><strong>depletion_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
+<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.OpenMCDepcode.write_saltproc_openmc_tallies">
+<span class="sig-name descname"><span class="pre">write_saltproc_openmc_tallies</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">materials</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geometry</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">energy_bounds</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_delayed_groups</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_saltproc_openmc_tallies"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.OpenMCDepcode.write_saltproc_openmc_tallies" title="Permalink to this definition">¶</a></dt>
+<dd><p>Write tallies for calculating burnup and delayed neutron
+parameters.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>materials</strong> (<cite>openmc.Materials</cite> object) – The materials for the depletion simulation</p></li>
+<li><p><strong>geometry</strong> (<cite>openmc.Geometry</cite> object) – The geometry for the depletion simulation</p></li>
+<li><p><strong>energy_bounds</strong> (<em>iterable</em><em> of </em><em>float</em>) – Energy group boundaries for calculating <span class="math notranslate nohighlight">\(\beta\)</span>, the delayed
+neutron fraction, and <span class="math notranslate nohighlight">\(\lambda\)</span>, the decay rate for delayed
+neutron precursors.</p></li>
+<li><p><strong>n_delayed_groups</strong> (<em>int</em>) – Number of delayed groups for calculating <span class="math notranslate nohighlight">\(\beta\)</span>, the delayed
+neutron fraction, and <span class="math notranslate nohighlight">\(\lambda\)</span>, the decay rate for delayed
+neutron precursors.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">SaltProc API</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../index.html#depeletion-code-interfaces">Depeletion code interfaces</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#reprocessing">Reprocessing</a><ul class="current">
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+<li class="toctree-l4"><a class="reference internal" href="#saltproc.Process"><code class="docutils literal notranslate"><span class="pre">Process</span></code></a></li>
+</ul>
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+             
+  <section id="saltproc-process">
+<h1>saltproc.Process<a class="headerlink" href="#saltproc-process" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.Process">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Process</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/process.html#Process"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Process" title="Permalink to this definition">¶</a></dt>
+<dd><p>Represents an aribtrary processing component that extracts nuclides from
+a material.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
+<li><p><strong>capacity</strong> (<em>float</em>) – maximum mass flow rate of the material flow which current process
+can handle (g/s)</p></li>
+<li><p><strong>volume</strong> (<em>float</em>) – total volume of the current facility (<span class="math notranslate nohighlight">\(cm^3\)</span>)</p></li>
+<li><p><strong>efficiency</strong> (<em>dict</em><em> of </em><em>str to float</em><em> or </em><em>str</em>) – <dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>element name for removal (not isotope)</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficency for the isotope as a weight fraction (float)
+or a function eps(x,m,t,P,L) (str)</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>optional_parameter</strong> (<em>float</em>) – user can define any custom parameter in the input file describing
+processes and use it in efficiency function</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Process.calculate_removal_efficiency">
+<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/process.html#Process.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Process.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
+<dd><p>Calculate the value of the removal efficiency for a given nuclide
+in this process.</p>
+<p>If the efficiency is a str describing efficiency as a
+function (eps(x,m,t,P,L)), then construct the function and evaluate it.
+Otherwise, it is a float and can be returned.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Process.check_mass_conservation">
+<span class="sig-name descname"><span class="pre">check_mass_conservation</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/process.html#Process.check_mass_conservation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Process.check_mass_conservation" title="Permalink to this definition">¶</a></dt>
+<dd><p>Checking that Process.outflow + Process.waste_stream is equal
+Process.inflow and the total mass is being conserved. Returns <cite>True</cite> if
+the mass conserved or <cite>False</cite> if its mismatched.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Process.process_material">
+<span class="sig-name descname"><span class="pre">process_material</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">inflow</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/process.html#Process.process_material"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Process.process_material" title="Permalink to this definition">¶</a></dt>
+<dd><p>Updates <a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object <cite>inflow</cite> by removing target
+nuclides with specific efficiencies in single component of fuel
+reprocessing system and returns waste stream Materialflow object.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>inflow</strong> (<em>Materialflow obj</em>) – Material flowing into the processing system component.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><ul class="simple">
+<li><p><strong>waste_stream</strong> (<em>Materialflow object</em>) – Waste stream from the reprocessing system component.</p></li>
+<li><p><strong>thru_flow</strong> (<em>Materialflow object</em>) – Remaining material flow that will pass through the
+reprocessing system component.</p></li>
+</ul>
+</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+<li class="toctree-l3 current"><a class="current reference internal" href="#">saltproc.Separator</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#saltproc.Separator"><code class="docutils literal notranslate"><span class="pre">Separator</span></code></a></li>
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+           <div itemprop="articleBody">
+             
+  <section id="saltproc-separator">
+<h1>saltproc.Separator<a class="headerlink" href="#saltproc-separator" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.Separator">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Separator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Separator" title="Permalink to this definition">¶</a></dt>
+<dd><p>Represents a bubble separator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
+Default: 0.1</p></li>
+<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
+Default: 0.005</p></li>
+<li><p><strong>do</strong> (<em>float</em>) – gas outlet diameter (m)
+Ranging from 1~3cm in our simulations
+Default: 0.02</p></li>
+<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
+Default: 0.1</p></li>
+<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
+Default: 0.001</p></li>
+<li><p><strong>deltap</strong> (<em>float</em>) – Pressure difference between the inlet and the gas outlet (Pa)
+(from 2e5 to 5e5 Pa)
+Default: 4e5</p></li>
+<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)
+Default: 900</p></li>
+<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
+<li><p><strong>jl</strong> (<em>float</em>) – liquid superficial velocity (m/s)</p></li>
+<li><p><strong>alpha</strong> (<em>float</em>) – void fraction</p></li>
+</ul>
+</dd>
+<dt class="field-even">Variables</dt>
+<dd class="field-even"><ul class="simple">
+<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
+Default: 0.1</p></li>
+<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
+Default: 0.005</p></li>
+<li><p><strong>do</strong> (<em>float</em>) – gas outlet diameter (m)
+Ranging from 1~3cm in our simulations
+Default: 0.02</p></li>
+<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
+Default: 0.1</p></li>
+<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
+Default: 0.001</p></li>
+<li><p><strong>deltap</strong> (<em>float</em>) – Pressure difference between the inlet and the gas outlet (Pa)
+(from 2e5 to 5e5 Pa)
+Default: 4e5</p></li>
+<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)
+Default: 900</p></li>
+<li><p><strong>k</strong> (<em>float</em>) – Slope of the initial swirling (use 1 for this).</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Separator.eff">
+<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Separator.eff" title="Permalink to this definition">¶</a></dt>
+<dd><p>Evaluates gas removal efficiency from Jiaqi’s correlation. [1]</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Separator.description">
+<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Separator.description" title="Permalink to this definition">¶</a></dt>
+<dd><p>Contains a dictionary of plot properties.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Separator.calc_rem_efficiency">
+<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#saltproc.Separator.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
+<dd><p>Overrides exiting method in Parent class.</p>
+</dd></dl>
+
+<p class="rubric">References</p>
+<p>[1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
+Sensitivity Analysis. In preparation</p>
+<p class="rubric">Notes</p>
+<p>Default values from Jiaqi’s simulation</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Separator.calculate_removal_efficiency">
+<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Separator.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
+<dd><p>Calculate the value of the removal efficiency for a given nuclide
+in this process.</p>
+<p>Overrides the existing method in :class`openmc.process.Process` to
+provide efficiency values of target isotopes calculated in the
+<code class="docutils literal notranslate"><span class="pre">eff()</span></code> function.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id0">
+<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
+<dd><p>Class attributes’ descriptions for plotting purpose in
+sensitivity analysis</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p><strong>pltdict</strong> – contains instances’ information</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p>dict of str to str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id1">
+<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
+<dd><p>Evaluates gas/bubble separation efficiency from Jiaqi’s correlation</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary that contains removal efficiency of each target
+element.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p>dict of str to float</p>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
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+<li class="toctree-l4"><a class="reference internal" href="#saltproc.SerpentDepcode"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a></li>
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+  <section id="saltproc-serpentdepcode">
+<h1>saltproc.SerpentDepcode<a class="headerlink" href="#saltproc-serpentdepcode" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">SerpentDepcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">zaid_convention</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode" title="Permalink to this definition">¶</a></dt>
+<dd><p>Interface for running depletion steps in Serpent, as well as obtaining
+depletion step results.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
+<li><p><strong>exec_path</strong> (<em>str</em>) – Path to Serpent2 executable.</p></li>
+<li><p><strong>template_input_file_path</strong> (<em>str</em>) – Path to user input file for Serpent2</p></li>
+<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em>) – Path to file that contains the reactor geometry.
+List of <cite>str</cite> if reactivity control by
+switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
+<li><p><strong>zaid_convention</strong> (<em>str</em>) – <p>ZAID naming convention for nuclide codes.</p>
+<p>’serpent’ - The third digit in ZA for nuclides in isomeric states
+is 3 (e.g. 47310 for for Ag-110m).</p>
+<p>’mcnp’ - ZA = Z*1000 + A + (300 + 100*m). where m is the mth
+isomeric state (e.g. 47510 for Ag-110m)</p>
+<p>’nndc’ - Identical to ‘mcnp’, except Am242m1 is 95242 and Am242
+is 95642</p>
+</p></li>
+</ul>
+</dd>
+<dt class="field-even">Variables</dt>
+<dd class="field-even"><ul class="simple">
+<li><p><strong>neutronics_parameters</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds Serpent2 depletion step neutronics parameters. Parameter names are
+keys and parameter values are values.</p></li>
+<li><p><strong>step_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds Serpent2 depletion step metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>depcode_metadata</strong> (<em>dict</em><em> of </em><em>str to type</em>) – Holds Serpent2 simulation metadata. Metadata labels are keys
+and metadata values are values.</p></li>
+<li><p><strong>runtime_inputfile</strong> (<em>str</em>) – Path to Serpent2 input file used to run depletion step. Contains neutron
+settings and non-burnable materials.</p></li>
+<li><p><strong>runtime_matfile</strong> (<em>str</em>) – Path to Serpent2 material file containing burnable materials used to
+run depletion step, and modified after fuel reprocessing.</p></li>
+<li><p><strong>npop</strong> (<em>int</em>) – Size of neutron population per cycle</p></li>
+<li><p><strong>active_cycles</strong> (<em>int</em>) – Number of active cycles.</p></li>
+<li><p><strong>inactive_cycles</strong> (<em>int</em>) – Number of inactive cycles.</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.create_runtime_matfile">
+<span class="sig-name descname"><span class="pre">create_runtime_matfile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.create_runtime_matfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.create_runtime_matfile" title="Permalink to this definition">¶</a></dt>
+<dd><p>Creates the runtime material file tracking burnable materials
+and inserts the path to this file in the Serpent2 runtime input file</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>file_lines</strong> – Serpent2 runtime input file with updated material file path.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>list of str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.get_neutron_settings">
+<span class="sig-name descname"><span class="pre">get_neutron_settings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.get_neutron_settings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.get_neutron_settings" title="Permalink to this definition">¶</a></dt>
+<dd><p>Get neutron settings (no. of neutrons per cycle, no. of active and
+inactive cycles) from the Serpent2 input file</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.insert_path_to_geometry">
+<span class="sig-name descname"><span class="pre">insert_path_to_geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.insert_path_to_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.insert_path_to_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Inserts <code class="docutils literal notranslate"><span class="pre">include</span> <span class="pre">&lt;first_geometry_file&gt;</span></code> line on the 6th line of
+Serpent2 input file.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>lines</strong> – Serpent 2 runtime input file containing modified path to geometry</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>list of str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.map_nuclide_name_to_serpent_name">
+<span class="sig-name descname"><span class="pre">map_nuclide_name_to_serpent_name</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.map_nuclide_name_to_serpent_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.map_nuclide_name_to_serpent_name" title="Permalink to this definition">¶</a></dt>
+<dd><p>Creates a dictionary mapping nuclide codes in <cite>zzaaam</cite> format
+to Serpent2’s nuclide code format.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p><p><strong>nuc_code_map</strong> – Maps <cite>zzaaam</cite> nuclide codes to Serpent2
+nuclide codes.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Nuclide code in <cite>zzaaam</cite> format. For example,
+<cite>922350</cite> or <cite>982510</cite>.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Nuclide code in Serpent2 format. For instance, 92235.09c for a
+nuclide with cross section data or 982510 for a decay-only nuclide.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p>dict of str to str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.name_to_nuclide_code">
+<span class="sig-name descname"><span class="pre">name_to_nuclide_code</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nucname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.name_to_nuclide_code"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.name_to_nuclide_code" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts depcode nuclide name to ZA nuclide code</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nucname</strong> (<em>str</em>) – Nuclide namce</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – ZA nuclide code</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.nuclide_code_to_name">
+<span class="sig-name descname"><span class="pre">nuclide_code_to_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.nuclide_code_to_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.nuclide_code_to_name" title="Permalink to this definition">¶</a></dt>
+<dd><p>Converts Serpent2 nuclide code to symbolic nuclide name.
+If nuclide is in a metastable state, the nuclide name is concatenated
+with the letter <cite>m</cite> and the state index.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Nuclide code in Serpent2 format (<cite>47310.09c</cite>)</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>nuc_name</strong> – Symbolic nuclide name (<cite>Am242_m1</cite>).</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.read_depcode_metadata">
+<span class="sig-name descname"><span class="pre">read_depcode_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_depcode_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.read_depcode_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads Serpent2 metadata and stores it in the
+<a class="reference internal" href="#saltproc.SerpentDepcode" title="saltproc.SerpentDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">depcode_metadata</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.read_depleted_materials">
+<span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads depleted materials from Serpent2’s <cite>*_dep.m</cite>
+file and returns a dictionary containing them.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
+depletion step. Otherwise, the function reads data at the
+beginning of the depletion step.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding material composition and properties.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>dict of str to Materialflow</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.read_neutronics_parameters">
+<span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads Serpent2 depletion step neutronics parameters and stores them
+in <a class="reference internal" href="#saltproc.SerpentDepcode" title="saltproc.SerpentDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code>
+attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.read_step_metadata">
+<span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Reads Serpent2 depletion step metadata and stores it in the
+<a class="reference internal" href="#saltproc.SerpentDepcode" title="saltproc.SerpentDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a> object’s <code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code> attribute.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.resolve_include_paths">
+<span class="sig-name descname"><span class="pre">resolve_include_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.resolve_include_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.resolve_include_paths" title="Permalink to this definition">¶</a></dt>
+<dd><p>Resolves relative paths in runtime input file into
+absolute paths.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>lines</strong> – Serpent 2 runtime input file containing modified <cite>include</cite> paths</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>list of str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.run_depletion_step">
+<span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threads</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
+<dd><p>Runs a depletion step in Serpent2 as a subprocess.</p>
+<dl class="simple">
+<dt>i       Parameters</dt><dd><dl class="simple">
+<dt>mpi_args<span class="classifier">list of str</span></dt><dd><p>Arguments for running simulations on supercomputers using
+<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p>
+</dd>
+<dt>threads<span class="classifier">int</span></dt><dd><p>Threads to use for shared-memory parallelism</p>
+</dd>
+</dl>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.set_power_load">
+<span class="sig-name descname"><span class="pre">set_power_load</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.set_power_load"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.set_power_load" title="Permalink to this definition">¶</a></dt>
+<dd><p>Set the power for the current depletion step</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p></li>
+<li><p><strong>reactor</strong> (<em>Reactor</em>) – Contains information about power load curve and cumulative
+depletion time for the integration test.</p></li>
+<li><p><strong>step_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>file_lines</strong> – Serpent2 runtime input file with power load specification.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>list of str</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.switch_to_next_geometry">
+<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
+<dd><p>Inserts line with path to next Serpent geometry file at the
+beginning of the Serpent iteration input file.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.update_depletable_materials">
+<span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
+<dd><p>Update material file with reprocessed material compositions.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><a class="reference internal" href="saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code></a> object holding composition and properties.</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.SerpentDepcode.write_runtime_input">
+<span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/serpent_depcode.html#SerpentDepcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.SerpentDepcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
+<dd><p>Write Serpent2 runtime input file for running depletion step</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>reactor</strong> (<em>Reactor</em>) – Contains information about power load curve and cumulative
+depletion time for the integration test.</p></li>
+<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
+<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="saltproc.Depcode.html" class="btn btn-neutral float-left" title="saltproc.Depcode" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="saltproc.OpenMCDepcode.html" class="btn btn-neutral float-right" title="saltproc.OpenMCDepcode" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p></p>
+  </div>
+
+  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
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+   
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+</footer>
+        </div>
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+    </section>
+  </div>
+  
+<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+  <span class="rst-current-version" data-toggle="rst-current-version">
+    <span class="fa fa-book"> Other Versions</span>
+    v: master
+    <span class="fa fa-caret-down"></span>
+  </span>
+  <div class="rst-other-versions">
+    <dl>
+      <dt>Branches</dt>
+      <dd><a href="saltproc.SerpentDepcode.html">master</a></dd>
+    </dl>
+  </div>
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+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
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+</html>
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diff --git a/master/src/saltproc.simulation.html b/master/api/generated/saltproc.Simulation.html
similarity index 51%
rename from master/src/saltproc.simulation.html
rename to master/api/generated/saltproc.Simulation.html
index 089313688..3d1ba0ebe 100644
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+++ b/master/api/generated/saltproc.Simulation.html
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-  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
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-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+              <ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">SaltProc API</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../index.html#depeletion-code-interfaces">Depeletion code interfaces</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#reprocessing">Reprocessing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#running-the-simulation">Running the simulation</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#results">Results</a><ul class="current">
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+<li class="toctree-l4"><a class="reference internal" href="#saltproc.Simulation"><code class="docutils literal notranslate"><span class="pre">Simulation</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
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@@ -75,22 +92,17 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="module-saltproc.simulation">
-<span id="saltproc-simulation-module"></span><h1>saltproc.simulation module<a class="headerlink" href="#module-saltproc.simulation" title="Permalink to this heading">¶</a></h1>
+  <section id="saltproc-simulation">
+<h1>saltproc.Simulation<a class="headerlink" href="#saltproc-simulation" title="Permalink to this heading">¶</a></h1>
 <dl class="py class">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.simulation.</span></span><span class="sig-name descname"><span class="pre">Simulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'depcode'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">adjust_geo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression_params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class for handling simulation information. Contains information
+<dt class="sig sig-object py" id="saltproc.Simulation">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Simulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'depcode'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">adjust_geo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression_params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation" title="Permalink to this definition">¶</a></dt>
+<dd><p>Class for handling simulation information. Contains information
 for running simulation wiht parallelism. Also contains the simulation
 name, a <cite>Depcode</cite> object, and the filename for the simulation database.
 Contains methods to store simulation metadata and depletion results in
 a database, predict reactor criticality at next depletion step, and
 switch simulation geometry.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'depcode'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">adjust_geo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression_params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Simulation object.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><ul class="simple">
@@ -112,23 +124,27 @@
 </ul>
 </dd>
 </dl>
-</dd></dl>
-
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.check_restart">
-<span class="sig-name descname"><span class="pre">check_restart</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.check_restart"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.check_restart" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.check_restart">
+<span class="sig-name descname"><span class="pre">check_restart</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.check_restart"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.check_restart" title="Permalink to this definition">¶</a></dt>
 <dd><p>If the user set <cite>restart_flag</cite>
 for <cite>False</cite> clean out iteration files and database from previous run.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><p><strong>restart_flag</strong> (<em>bool</em>) – Is the current simulation restarted?</p>
 </dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>failed_step</strong> – The depletion step that the simulation failed on.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>int</p>
+</dd>
 </dl>
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.check_switch_geo_trigger">
-<span class="sig-name descname"><span class="pre">check_switch_geo_trigger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_time</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">switch_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.check_switch_geo_trigger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.check_switch_geo_trigger" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.check_switch_geo_trigger">
+<span class="sig-name descname"><span class="pre">check_switch_geo_trigger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_time</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">switch_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.check_switch_geo_trigger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.check_switch_geo_trigger" title="Permalink to this definition">¶</a></dt>
 <dd><p>Compares the current timestep with the user defined times
 at which to switch reactor geometry, and returns <cite>True</cite> if there
 is a match.</p>
@@ -149,8 +165,8 @@
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.read_k_eds_delta">
-<span class="sig-name descname"><span class="pre">read_k_eds_delta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_timestep</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.read_k_eds_delta"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.read_k_eds_delta" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.read_k_eds_delta">
+<span class="sig-name descname"><span class="pre">read_k_eds_delta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_timestep</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.read_k_eds_delta"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.read_k_eds_delta" title="Permalink to this definition">¶</a></dt>
 <dd><p>Reads from database delta between previous and current <cite>keff</cite> at the
 end of depletion step and returns <cite>True</cite> if predicted <cite>keff</cite> at the
 next depletion step drops below 1.</p>
@@ -168,8 +184,8 @@
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_after_repr">
-<span class="sig-name descname"><span class="pre">store_after_repr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">after_mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_after_repr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_after_repr" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.store_after_repr">
+<span class="sig-name descname"><span class="pre">store_after_repr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">after_mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.store_after_repr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.store_after_repr" title="Permalink to this definition">¶</a></dt>
 <dd><p>Add data for waste streams [grams per depletion step] of each
 process to the HDF5 database after reprocessing.</p>
 <dl class="field-list simple">
@@ -193,12 +209,23 @@
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_mat_data">
-<span class="sig-name descname"><span class="pre">store_mat_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">store_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_mat_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_mat_data" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.store_depcode_metadata">
+<span class="sig-name descname"><span class="pre">store_depcode_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.store_depcode_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.store_depcode_metadata" title="Permalink to this definition">¶</a></dt>
+<dd><p>Adds the following depletion code and SaltProc simulation parameters
+to the database:
+neutron population, active cycles, inactive cycles, depletion code
+version simulation title, depetion code input file path, depletion code
+working directory, cross section data path, # of OMP threads, # of MPI
+tasks, memory optimization mode (Serpent), depletion timestep size.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Simulation.store_mat_data">
+<span class="sig-name descname"><span class="pre">store_mat_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">store_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.store_mat_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.store_mat_data" title="Permalink to this definition">¶</a></dt>
 <dd><p>Initialize the HDF5/Pytables database (if it doesn’t exist) or
 append the following data at the current depletion step to the
 database: burnable material composition, mass, density, volume,
-temperature, burnup,  mass_flowrate, void_fraction.</p>
+burnup,  mass_flowrate, void_fraction.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>
 <dd class="field-odd"><ul class="simple">
@@ -221,19 +248,17 @@
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_init_info">
-<span class="sig-name descname"><span class="pre">store_run_init_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_init_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_init_info" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.store_step_metadata">
+<span class="sig-name descname"><span class="pre">store_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.store_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.store_step_metadata" title="Permalink to this definition">¶</a></dt>
 <dd><p>Adds the following depletion code and SaltProc simulation parameters
 to the database:
-neutron population, active cycles, inactive cycles, depletion code
-version simulation title, depetion code input file path, depletion code
-working directory, cross section data path, # of OMP threads, # of MPI
+neutron population, active cycles, inactive cycles, # of OMP threads, # of MPI
 tasks, memory optimization mode (Serpent), depletion timestep size.</p>
 </dd></dl>
 
 <dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_step_info">
-<span class="sig-name descname"><span class="pre">store_run_step_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_step_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_step_info" title="Permalink to this definition">¶</a></dt>
+<dt class="sig sig-object py" id="saltproc.Simulation.store_step_neutronics_parameters">
+<span class="sig-name descname"><span class="pre">store_step_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/simulation.html#Simulation.store_step_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Simulation.store_step_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
 <dd><p>Adds the following depletion code and SaltProc simulation
 data at the current depletion step to the database:
 execution time, memory usage, multiplication factor, breeding ratio,
@@ -248,7 +273,10 @@
 
            </div>
           </div>
-          <footer>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="app.html" class="btn btn-neutral float-left" title="app" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../../io_formats/index.html" class="btn btn-neutral float-right" title="File Format Specifications" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
 
   <hr/>
 
@@ -274,14 +302,9 @@
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   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
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-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="saltproc.simulation.html">master</a></dd>
+      <dd><a href="saltproc.Simulation.html">master</a></dd>
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   </div>
 </div><script>
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new file mode 100644
index 000000000..2b0ffb09b
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+++ b/master/api/generated/saltproc.Sparger.html
@@ -0,0 +1,333 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
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+             
+  <section id="saltproc-sparger">
+<h1>saltproc.Sparger<a class="headerlink" href="#saltproc-sparger" title="Permalink to this heading">¶</a></h1>
+<dl class="py class">
+<dt class="sig sig-object py" id="saltproc.Sparger">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.</span></span><span class="sig-name descname"><span class="pre">Sparger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger" title="Permalink to this definition">¶</a></dt>
+<dd><p>Represents a gas sparger/bubble generator.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
+Default: 0.1</p></li>
+<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
+Default: 0.005</p></li>
+<li><p><strong>length</strong> (<em>float</em>) – sparger/contractor length (m)
+Default: 10</p></li>
+<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
+Default: 0.1</p></li>
+<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
+Default: 0.001</p></li>
+<li><p><strong>temp_salt</strong> (<em>float</em>) – salt temperature (K)
+Default: 900</p></li>
+<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
+<li><p><strong>corr</strong> (<em>string</em>) – Sherwood correlations: ORNL-TM-2245 or Jaiqi’s
+(1) milestone report from Jiaqi [3]
+(2) ORNL-TM-2245 Eq.36 [2]
+default: Sherwood correlation from ORNL-TM-2245 Eq.36</p></li>
+</ul>
+</dd>
+<dt class="field-even">Variables</dt>
+<dd class="field-even"><ul class="simple">
+<li><p><strong>h_const</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Henry’s law constant.</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>gas_const</strong> (<em>real</em>) – universal gas constant (Pa.m^3/mol-K)</p></li>
+<li><p><strong>diffusivity</strong> (<em>real</em>) – liquid phase diffusivity (cm^2/s)</p></li>
+<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)</p></li>
+<li><p><strong>exp_const</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>exponential constant from following reference</p>
+</dd>
+</dl>
+</p></li>
+<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
+Default: 0.1</p></li>
+<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
+Default: 0.005</p></li>
+<li><p><strong>length</strong> (<em>float</em>) – sparger/contractor length (m)
+Default: 10</p></li>
+<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
+Default: 0.1</p></li>
+<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
+Default: 0.001</p></li>
+<li><p><strong>temp_salt</strong> (<em>float</em>) – salt temperature (K)
+Default: 900</p></li>
+<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
+</ul>
+</dd>
+</dl>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.eps">
+<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger.eps" title="Permalink to this definition">¶</a></dt>
+<dd><p>Defines gas removal efficiency for sparger (bubble generator)
+using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.eff">
+<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger.eff" title="Permalink to this definition">¶</a></dt>
+<dd><p>Evaluates gas removal efficiencies for target isotopes.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.sherwood">
+<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger.sherwood" title="Permalink to this definition">¶</a></dt>
+<dd><p>Contains Sherwood number correlations from different sources.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.description">
+<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger.description" title="Permalink to this definition">¶</a></dt>
+<dd><p>Contains a dictionary of plot properties.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.calc_rem_efficiency">
+<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#saltproc.Sparger.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
+<dd><p>Overrides exiting method in Parent class.</p>
+</dd></dl>
+
+<p class="rubric">References</p>
+<p>[1] Henry’s law constants (Pa.m3/mol) for Xe, Kr, H from
+Sander, R.: Compilation of Henry’s law constants (version 4.0)
+for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,
+<a class="reference external" href="https://doi.org/10.5194/acp-15-4399-2015">https://doi.org/10.5194/acp-15-4399-2015</a>, 2015.
+[2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating
+Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge
+National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.
+[3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
+Sensitivity Analysis. In preparation</p>
+<p class="rubric">Notes</p>
+<p>Default values comes from Jiaqi’s simulation</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="saltproc.Sparger.calculate_removal_efficiency">
+<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.Sparger.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
+<dd><p>Calculate the value of the removal efficiency for a given nuclide
+in this process.</p>
+<p>Overrides the existing method in :class`openmc.process.Process` to
+provide efficiency values of target isotopes calculated in the
+<code class="docutils literal notranslate"><span class="pre">eff()</span></code> function.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id0">
+<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
+<dd><p>Class attributes’ descriptions for plotting purpose in sensitivity
+analysis
+:returns: <strong>pltdict</strong> – contains instances’ information
+:rtype: dict of str to str</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id1">
+<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
+<dd><p>Evaluates gas removal efficiencies for target isotopes.
+In this function, vl, mu, rho, number_sh, number_sc, number_re and kl
+are average liquid velocity (m/s), kinematic viscosity (Pa.s),
+density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,
+schmidt number, reynold number and liquid phase mass transfer
+coefficient (m/s), respectively.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary containing removal efficiency of each target isotope.</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
+</dd>
+</dl>
+</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p>dict of str to float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id2">
+<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
+<dd><p>Evaluates gas removal efficiency using Eq. 4
+from Peebles report (ORNL-TM-2245).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Returns</dt>
+<dd class="field-odd"><p><strong>efficiency</strong> – removal efficiency of a specific chemical element.</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p>float</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="id3">
+<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Permalink to this definition">¶</a></dt>
+<dd><p>Contains Sherwood number correlations.
+Sherwood correlations: ORNL-TM-2245 or Jaiqi
+(1) Jaiqi Ph.D. dissertation
+(2) ORNL-TM-2245 Eq.36
+default: Sherwood correlation from ORNL-TM-2245 Eq.36</p>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+<li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">SaltProc API</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#depeletion-code-interfaces">Depeletion code interfaces</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.Depcode.html">saltproc.Depcode</a></li>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.SerpentDepcode.html">saltproc.SerpentDepcode</a></li>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.OpenMCDepcode.html">saltproc.OpenMCDepcode</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#reprocessing">Reprocessing</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.Materialflow.html">saltproc.Materialflow</a></li>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.Process.html">saltproc.Process</a></li>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.Sparger.html">saltproc.Sparger</a></li>
+<li class="toctree-l3"><a class="reference internal" href="generated/saltproc.Separator.html">saltproc.Separator</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#running-the-simulation">Running the simulation</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="generated/app.html">app</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#results">Results</a><ul>
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+</ul>
+</li>
+</ul>
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+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
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+           <div itemprop="articleBody">
+             
+  <section id="saltproc-api">
+<h1>SaltProc API<a class="headerlink" href="#saltproc-api" title="Permalink to this heading">¶</a></h1>
+<section id="depeletion-code-interfaces">
+<h2>Depeletion code interfaces<a class="headerlink" href="#depeletion-code-interfaces" title="Permalink to this heading">¶</a></h2>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/saltproc.Depcode.html#saltproc.Depcode" title="saltproc.Depcode"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Depcode</span></code></a></p></td>
+<td><p>Abstract interface for running depletion steps.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode" title="saltproc.SerpentDepcode"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.SerpentDepcode</span></code></a></p></td>
+<td><p>Interface for running depletion steps in Serpent, as well as obtaining depletion step results.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode" title="saltproc.OpenMCDepcode"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.OpenMCDepcode</span></code></a></p></td>
+<td><p>Interface for running depletion steps in OpenMC, as well as obtaining depletion step results.</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="reprocessing">
+<h2>Reprocessing<a class="headerlink" href="#reprocessing" title="Permalink to this heading">¶</a></h2>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a></p></td>
+<td><p>Class contains information about burnable material flow.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/saltproc.Process.html#saltproc.Process" title="saltproc.Process"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Process</span></code></a></p></td>
+<td><p>Represents an aribtrary processing component that extracts nuclides from a material.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/saltproc.Sparger.html#saltproc.Sparger" title="saltproc.Sparger"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Sparger</span></code></a></p></td>
+<td><p>Represents a gas sparger/bubble generator.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/saltproc.Separator.html#saltproc.Separator" title="saltproc.Separator"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Separator</span></code></a></p></td>
+<td><p>Represents a bubble separator.</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="running-the-simulation">
+<h2>Running the simulation<a class="headerlink" href="#running-the-simulation" title="Permalink to this heading">¶</a></h2>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/app.html#module-app" title="app"><code class="xref py py-obj docutils literal notranslate"><span class="pre">app</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+</tbody>
+</table>
+</section>
+<section id="results">
+<h2>Results<a class="headerlink" href="#results" title="Permalink to this heading">¶</a></h2>
+<table class="autosummary longtable docutils align-default">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="generated/saltproc.Simulation.html#saltproc.Simulation" title="saltproc.Simulation"><code class="xref py py-obj docutils literal notranslate"><span class="pre">saltproc.Simulation</span></code></a></p></td>
+<td><p>Class for handling simulation information.</p></td>
+</tr>
+</tbody>
+</table>
+<p>This is automatically generated API documentation from SaltProc source files.</p>
+<p>Click the  “modules” (<a class="reference internal" href="../py-modindex.html"><span class="std std-ref">Module Index</span></a>) link to browse the modules.
+Or, dive right into the autogenerated <span class="xref std std-doc">saltproc</span> docs.</p>
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+
+
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+      <dt>Branches</dt>
+      <dd><a href="index.html">master</a></dd>
+    </dl>
+  </div>
+</div><script>
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script> 
+
+</body>
+</html>
\ No newline at end of file
diff --git a/master/devguide/contributing.html b/master/devguide/contributing.html
index 5d526e192..f4147e025 100644
--- a/master/devguide/contributing.html
+++ b/master/devguide/contributing.html
@@ -20,7 +20,7 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="File Format Specifications" href="../fileformatspec/index.html" />
+    <link rel="next" title="Style Guide" href="style.html" />
     <link rel="prev" title="Developer’s Guide" href="index.html" /> 
 </head>
 
@@ -46,8 +46,9 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">Developer’s Guide</a><ul class="current">
 <li class="toctree-l2 current"><a class="current reference internal" href="#">Contributing</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="#thanks-for-your-help">Thanks for Your Help!</a><ul>
@@ -60,9 +61,12 @@
 </li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="style.html">Style Guide</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tests.html">Test Suite</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -92,7 +96,7 @@
            <div itemprop="articleBody">
              
   <section id="contributing">
-<h1>Contributing<a class="headerlink" href="#contributing" title="Permalink to this heading">¶</a></h1>
+<span id="devguide-contributing"></span><h1>Contributing<a class="headerlink" href="#contributing" title="Permalink to this heading">¶</a></h1>
 <section id="thanks-for-your-help">
 <h2>Thanks for Your Help!<a class="headerlink" href="#thanks-for-your-help" title="Permalink to this heading">¶</a></h2>
 <p>Contributing is so kind of you. In SaltProc, all contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome.</p>
@@ -190,7 +194,7 @@ <h3>Meta<a class="headerlink" href="#meta" title="Permalink to this heading">¶<
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="index.html" class="btn btn-neutral float-left" title="Developer’s Guide" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="../fileformatspec/index.html" class="btn btn-neutral float-right" title="File Format Specifications" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="style.html" class="btn btn-neutral float-right" title="Style Guide" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
@@ -217,11 +221,6 @@ <h3>Meta<a class="headerlink" href="#meta" title="Permalink to this heading">¶<
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/devguide/contributing.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="contributing.html">master</a></dd>
diff --git a/master/devguide/index.html b/master/devguide/index.html
index 3db92e5fe..be7d9e586 100644
--- a/master/devguide/index.html
+++ b/master/devguide/index.html
@@ -21,7 +21,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Contributing" href="contributing.html" />
-    <link rel="prev" title="Release notes for v0.3.0" href="../releasenotes/v0.3.0.html" /> 
+    <link rel="prev" title="Running in Parallel" href="../userguide/parallel.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -46,13 +46,17 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Developer’s Guide</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="contributing.html">Contributing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="style.html">Style Guide</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tests.html">Test Suite</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -97,6 +101,8 @@
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">Contributing</a></li>
+<li class="toctree-l1"><a class="reference internal" href="style.html">Style Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tests.html">Test Suite</a></li>
 </ul>
 </div>
 </section>
@@ -105,7 +111,7 @@
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../releasenotes/v0.3.0.html" class="btn btn-neutral float-left" title="Release notes for v0.3.0" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../userguide/parallel.html" class="btn btn-neutral float-left" title="Running in Parallel" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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     </div>
 
@@ -133,11 +139,6 @@
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/devguide/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="index.html">master</a></dd>
diff --git a/master/src/index.html b/master/devguide/style.html
similarity index 67%
rename from master/src/index.html
rename to master/devguide/style.html
index 688f3a8f6..4015199e0 100644
--- a/master/src/index.html
+++ b/master/devguide/style.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>SaltProc API &mdash; Saltproc 0.5.dev documentation</title>
+  <title>Style Guide &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -20,8 +20,8 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Release Notes" href="../releasenotes/index.html" />
-    <link rel="prev" title="Examples" href="../examples.html" /> 
+    <link rel="next" title="Test Suite" href="tests.html" />
+    <link rel="prev" title="Contributing" href="contributing.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -46,10 +46,17 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Developer’s Guide</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="contributing.html">Contributing</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Style Guide</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tests.html">Test Suite</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -67,9 +74,10 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../index.html" class="icon icon-home"></a></li>
-      <li class="breadcrumb-item active">SaltProc API</li>
+          <li class="breadcrumb-item"><a href="index.html">Developer’s Guide</a></li>
+      <li class="breadcrumb-item active">Style Guide</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/src/index.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/devguide/style.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -77,19 +85,17 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="saltproc-api">
-<h1>SaltProc API<a class="headerlink" href="#saltproc-api" title="Permalink to this heading">¶</a></h1>
-<p>This is automatically generated API documentation from SaltProc source files.</p>
-<p>Click the  “modules” (<a class="reference internal" href="../py-modindex.html"><span class="std std-ref">Module Index</span></a>) link to browse the modules.
-Or, dive right into the autogenerated <a class="reference internal" href="saltproc.html"><span class="doc">saltproc package</span></a> docs.</p>
+  <section id="style-guide">
+<span id="devguide-style"></span><h1>Style Guide<a class="headerlink" href="#style-guide" title="Permalink to this heading">¶</a></h1>
+<p>Style for Python code must follow <a class="reference external" href="https://www.python.org/dev/peps/pep-0008/">PEP8</a>.</p>
 </section>
 
 
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../examples.html" class="btn btn-neutral float-left" title="Examples" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="../releasenotes/index.html" class="btn btn-neutral float-right" title="Release Notes" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="contributing.html" class="btn btn-neutral float-left" title="Contributing" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="tests.html" class="btn btn-neutral float-right" title="Test Suite" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
@@ -116,14 +122,9 @@ <h1>SaltProc API<a class="headerlink" href="#saltproc-api" title="Permalink to t
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/src/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/src/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="index.html">master</a></dd>
+      <dd><a href="style.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/v0.4.0/releasenotes/index.html b/master/devguide/tests.html
similarity index 59%
rename from v0.4.0/releasenotes/index.html
rename to master/devguide/tests.html
index d65d17c00..62db6d9cf 100644
--- a/v0.4.0/releasenotes/index.html
+++ b/master/devguide/tests.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Release Notes &mdash; Saltproc 0.4.0 documentation</title>
+  <title>Test Suite &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -20,8 +20,8 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Release notes for v0.4.0" href="v0.4.0.html" />
-    <link rel="prev" title="SaltProc API" href="../src/index.html" /> 
+    <link rel="next" title="SaltProc API" href="../api/index.html" />
+    <link rel="prev" title="Style Guide" href="style.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -32,7 +32,7 @@
             <a href="../index.html" class="icon icon-home"> Saltproc
           </a>
               <div class="version">
-                0.4.0
+                0.5.dev
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -46,13 +46,17 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">Release Notes</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="v0.4.0.html">Release notes for v0.4.0</a></li>
-<li class="toctree-l2"><a class="reference internal" href="v0.3.0.html">Release notes for v0.3.0</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">Developer’s Guide</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="contributing.html">Contributing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="style.html">Style Guide</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Test Suite</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -70,9 +74,10 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../index.html" class="icon icon-home"></a></li>
-      <li class="breadcrumb-item active">Release Notes</li>
+          <li class="breadcrumb-item"><a href="index.html">Developer’s Guide</a></li>
+      <li class="breadcrumb-item active">Test Suite</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/releasenotes/index.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/devguide/tests.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -80,22 +85,25 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="release-notes">
-<span id="releasenotes"></span><h1>Release Notes<a class="headerlink" href="#release-notes" title="Permalink to this heading">¶</a></h1>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="v0.4.0.html">Release notes for v0.4.0</a></li>
-<li class="toctree-l1"><a class="reference internal" href="v0.3.0.html">Release notes for v0.3.0</a></li>
-</ul>
-</div>
+  <section id="test-suite">
+<span id="devguide-tests"></span><h1>Test Suite<a class="headerlink" href="#test-suite" title="Permalink to this heading">¶</a></h1>
+<p>The SaltProc test suite uses the JEFF 3.1.2 library for Serpent2 integration
+tests, and the ENDF/B VII.1 library for OpenMC integration tests. You can
+obtain the JEFF 3.1.2 library by running the <cite>process_j312.bash</cite> script
+under <cite>scripts/xsdata</cite>, and you can obtain the ENDF/B VII.1 library
+for OpenMC from <a class="reference external" href="https://anl.box.com/shared/static/9igk353zpy8fn9ttvtrqgzvw1vtejoz6.xz">this</a> link, which you can also find on
+<a class="reference external" href="openmc.org/official-data-libraries/">openmc.org</a>. The test suite
+requires the <a class="reference external" href="https://docs.pytest.org">pytest</a> package.</p>
+<p>Whenever a new feature or function is added, a test should also be added
+for that feature.</p>
 </section>
 
 
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../src/index.html" class="btn btn-neutral float-left" title="SaltProc API" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="v0.4.0.html" class="btn btn-neutral float-right" title="Release notes for v0.4.0" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="style.html" class="btn btn-neutral float-left" title="Style Guide" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../api/index.html" class="btn btn-neutral float-right" title="SaltProc API" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
@@ -118,18 +126,13 @@
 <div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
   <span class="rst-current-version" data-toggle="rst-current-version">
     <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
+    v: master
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="../../master/releasenotes/index.html">master</a></dd>
+      <dd><a href="tests.html">master</a></dd>
     </dl>
   </div>
 </div><script>
diff --git a/master/examples.html b/master/examples.html
index 8f6b130b9..f8ec4263b 100644
--- a/master/examples.html
+++ b/master/examples.html
@@ -20,7 +20,7 @@
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="SaltProc API" href="src/index.html" />
+    <link rel="next" title="Release Notes" href="releasenotes/index.html" />
     <link rel="prev" title="Installation" href="installation.html" /> 
 </head>
 
@@ -46,10 +46,12 @@
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -101,7 +103,7 @@ <h1>Examples<a class="headerlink" href="#examples" title="Permalink to this head
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="installation.html" class="btn btn-neutral float-left" title="Installation" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="src/index.html" class="btn btn-neutral float-right" title="SaltProc API" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="releasenotes/index.html" class="btn btn-neutral float-right" title="Release Notes" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
@@ -128,11 +130,6 @@ <h1>Examples<a class="headerlink" href="#examples" title="Permalink to this head
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/examples.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/examples.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="examples.html">master</a></dd>
diff --git a/master/genindex.html b/master/genindex.html
index 616ecef7b..46f941244 100644
--- a/master/genindex.html
+++ b/master/genindex.html
@@ -43,10 +43,12 @@
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -77,128 +79,61 @@
 <h1 id="index">Index</h1>
 
 <div class="genindex-jumpbox">
- <a href="#_"><strong>_</strong></a>
- | <a href="#A"><strong>A</strong></a>
+ <a href="#A"><strong>A</strong></a>
  | <a href="#C"><strong>C</strong></a>
  | <a href="#D"><strong>D</strong></a>
  | <a href="#E"><strong>E</strong></a>
  | <a href="#G"><strong>G</strong></a>
- | <a href="#H"><strong>H</strong></a>
  | <a href="#I"><strong>I</strong></a>
- | <a href="#K"><strong>K</strong></a>
- | <a href="#L"><strong>L</strong></a>
  | <a href="#M"><strong>M</strong></a>
  | <a href="#N"><strong>N</strong></a>
  | <a href="#O"><strong>O</strong></a>
  | <a href="#P"><strong>P</strong></a>
- | <a href="#Q"><strong>Q</strong></a>
  | <a href="#R"><strong>R</strong></a>
  | <a href="#S"><strong>S</strong></a>
- | <a href="#T"><strong>T</strong></a>
  | <a href="#U"><strong>U</strong></a>
  | <a href="#W"><strong>W</strong></a>
  
 </div>
-<h2 id="_">_</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">__add__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">__deepcopy__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">__eq__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.__init__">__init__() (saltproc.abc.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">(saltproc.materialflow.Materialflow method)</a>
-</li>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.__init__">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
-</li>
-        <li><a href="src/saltproc.process.html#saltproc.process.Process.__init__">(saltproc.process.Process method)</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">(saltproc.reactor.Reactor method)</a>
-</li>
-        <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.__init__">(saltproc.separator.Separator method)</a>
-</li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.__init__">(saltproc.serpent_depcode.SerpentDepcode method)</a>
-</li>
-        <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">(saltproc.simulation.Simulation method)</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">(saltproc.sparger.Sparger method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">__rmul__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._create_depcode_object">_create_depcode_object() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._create_reactor_object">_create_reactor_object() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._create_simulation_object">_create_simulation_object() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._print_simulation_input_info">_print_simulation_input_info() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._process_main_input_reactor_params">_process_main_input_reactor_params() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._scale_depletion_timesteps">_scale_depletion_timesteps() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app._validate_depletion_timesteps_power_levels">_validate_depletion_timesteps_power_levels() (in module saltproc.app)</a>
-</li>
-  </ul></td>
-</tr></table>
-
 <h2 id="A">A</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.active_cycles">active_cycles (saltproc.abc.Depcode attribute)</a>
+      <li>
+    app
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.active_cycles">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
-</li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.active_cycles">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
+        <li><a href="api/generated/app.html#module-app">module</a>
 </li>
       </ul></li>
   </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.area">area (saltproc.sparger.Sparger attribute)</a>
-</li>
-  </ul></td>
 </tr></table>
 
 <h2 id="C">C</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency">calc_rem_efficiency() (saltproc.separator.Separator method)</a>
+      <li><a href="api/generated/saltproc.Separator.html#saltproc.Separator.calc_rem_efficiency">calc_rem_efficiency() (saltproc.Separator method)</a>
 
       <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency">(saltproc.sparger.Sparger method)</a>
+        <li><a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.calc_rem_efficiency">(saltproc.Sparger method)</a>
 </li>
       </ul></li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.calculate_removal_efficiency">calculate_removal_efficiency() (saltproc.process.Process method)</a>
+      <li><a href="api/generated/saltproc.Process.html#saltproc.Process.calculate_removal_efficiency">calculate_removal_efficiency() (saltproc.Process method)</a>
 
       <ul>
-        <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.calculate_removal_efficiency">(saltproc.separator.Separator method)</a>
+        <li><a href="api/generated/saltproc.Separator.html#saltproc.Separator.calculate_removal_efficiency">(saltproc.Separator method)</a>
 </li>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.calculate_removal_efficiency">(saltproc.sparger.Sparger method)</a>
+        <li><a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.calculate_removal_efficiency">(saltproc.Sparger method)</a>
 </li>
       </ul></li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">check_mass_conservation() (saltproc.process.Process method)</a>
-</li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.check_restart">check_restart() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">check_switch_geo_trigger() (saltproc.simulation.Simulation method)</a>
+      <li><a href="api/generated/saltproc.Process.html#saltproc.Process.check_mass_conservation">check_mass_conservation() (saltproc.Process method)</a>
 </li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name">convert_nuclide_code_to_name() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.check_restart">check_restart() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam">convert_nuclide_code_to_zam() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.check_switch_geo_trigger">check_switch_geo_trigger() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">copy_pymat_attrs() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile">create_runtime_matfile() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.create_runtime_matfile">create_runtime_matfile() (saltproc.SerpentDepcode method)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -206,32 +141,14 @@ <h2 id="C">C</h2>
 <h2 id="D">D</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.db">db (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.db">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.deltap">deltap (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode">Depcode (class in saltproc.abc)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode">Depcode (class in saltproc)</a>
 </li>
-      <li><a href="src/saltproc.separator.html#id0">description() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.description">[1]</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id0">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[1]</a>
-</li>
-      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id1">diffusivity (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.diffusivity">[1]</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.do">do (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.dp">dp (saltproc.separator.Separator attribute)</a>
+      <li><a href="api/generated/saltproc.Separator.html#id0">description() (saltproc.Separator method)</a>, <a href="api/generated/saltproc.Separator.html#saltproc.Separator.description">[1]</a>
 
       <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.dp">(saltproc.sparger.Sparger attribute)</a>
+        <li><a href="api/generated/saltproc.Sparger.html#id0">(saltproc.Sparger method)</a>, <a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.description">[1]</a>
 </li>
       </ul></li>
   </ul></td>
@@ -240,17 +157,15 @@ <h2 id="D">D</h2>
 <h2 id="E">E</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id1">eff() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.eff">[1]</a>
+      <li><a href="api/generated/saltproc.Separator.html#id1">eff() (saltproc.Separator method)</a>, <a href="api/generated/saltproc.Separator.html#saltproc.Separator.eff">[1]</a>
 
       <ul>
-        <li><a href="src/saltproc.sparger.html#id2">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[1]</a>
+        <li><a href="api/generated/saltproc.Sparger.html#id1">(saltproc.Sparger method)</a>, <a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.eff">[1]</a>
 </li>
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id3">eps() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[1]</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#id4">exp_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.exp_const">[1]</a>
+      <li><a href="api/generated/saltproc.Sparger.html#id2">eps() (saltproc.Sparger method)</a>, <a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.eps">[1]</a>
 </li>
   </ul></td>
 </tr></table>
@@ -258,27 +173,11 @@ <h2 id="E">E</h2>
 <h2 id="G">G</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id5">gas_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.gas_const">[1]</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.get_extraction_process_paths">get_extraction_process_paths() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.get_extraction_processes">get_extraction_processes() (in module saltproc.app)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.get_feeds">get_feeds() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">get_mass() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings">get_neutron_settings() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.Materialflow.html#saltproc.Materialflow.get_mass">get_mass() (saltproc.Materialflow method)</a>
 </li>
   </ul></td>
-</tr></table>
-
-<h2 id="H">H</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id6">h_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.h_const">[1]</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.get_neutron_settings">get_neutron_settings() (saltproc.SerpentDepcode method)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -286,71 +185,25 @@ <h2 id="H">H</h2>
 <h2 id="I">I</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.inactive_cycles">inactive_cycles (saltproc.abc.Depcode attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.inactive_cycles">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
-</li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.inactive_cycles">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry">insert_path_to_geometry() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.insert_path_to_geometry">insert_path_to_geometry() (saltproc.SerpentDepcode method)</a>
 </li>
   </ul></td>
 </tr></table>
 
-<h2 id="K">K</h2>
+<h2 id="M">M</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id2">k (saltproc.separator.Separator attribute)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.k">[1]</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.map_nuclide_name_to_serpent_name">map_nuclide_name_to_serpent_name() (saltproc.SerpentDepcode method)</a>
 </li>
-  </ul></td>
-</tr></table>
-
-<h2 id="L">L</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.length">length (saltproc.sparger.Sparger attribute)</a>
+      <li><a href="api/generated/saltproc.Materialflow.html#saltproc.Materialflow">Materialflow (class in saltproc)</a>
 </li>
   </ul></td>
-</tr></table>
-
-<h2 id="M">M</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent">map_nuclide_code_zam_to_serpent() (saltproc.serpent_depcode.SerpentDepcode method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">Materialflow (class in saltproc.materialflow)</a>
-</li>
       <li>
     module
 
       <ul>
-        <li><a href="src/saltproc.html#module-saltproc">saltproc</a>
-</li>
-        <li><a href="src/saltproc.abc.html#module-saltproc.abc">saltproc.abc</a>
-</li>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">saltproc.app</a>
-</li>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">saltproc.materialflow</a>
-</li>
-        <li><a href="src/saltproc.openmc_depcode.html#module-saltproc.openmc_depcode">saltproc.openmc_depcode</a>
-</li>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">saltproc.process</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">saltproc.reactor</a>
-</li>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">saltproc.separator</a>
-</li>
-        <li><a href="src/saltproc.serpent_depcode.html#module-saltproc.serpent_depcode">saltproc.serpent_depcode</a>
-</li>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">saltproc.simulation</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">saltproc.sparger</a>
-</li>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">saltproc.version</a>
+        <li><a href="api/generated/app.html#module-app">app</a>
 </li>
       </ul></li>
   </ul></td>
@@ -359,22 +212,22 @@ <h2 id="M">M</h2>
 <h2 id="N">N</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.neutronics_parameters">neutronics_parameters (saltproc.abc.Depcode attribute)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.name_to_nuclide_code">name_to_nuclide_code() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.name_to_nuclide_code">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.name_to_nuclide_code">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.npop">npop (saltproc.abc.Depcode attribute)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.nuclide_code_to_name">nuclide_code_to_name() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.npop">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.nuclide_code_to_name">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.npop">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.nuclide_code_to_name">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -383,7 +236,7 @@ <h2 id="N">N</h2>
 <h2 id="O">O</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode">OpenMCDepcode (class in saltproc.openmc_depcode)</a>
+      <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode">OpenMCDepcode (class in saltproc)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -391,104 +244,80 @@ <h2 id="O">O</h2>
 <h2 id="P">P</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.parse_arguments">parse_arguments() (in module saltproc.app)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.preserve_simulation_files">preserve_simulation_files() (saltproc.Depcode method)</a>
 </li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">print_attr() (saltproc.materialflow.Materialflow method)</a>
+      <li><a href="api/generated/saltproc.Materialflow.html#saltproc.Materialflow.print_attr">print_attr() (saltproc.Materialflow method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process">Process (class in saltproc.process)</a>
+      <li><a href="api/generated/saltproc.Process.html#saltproc.Process">Process (class in saltproc)</a>
 </li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.process_material">process_material() (saltproc.process.Process method)</a>
+      <li><a href="api/generated/saltproc.Process.html#saltproc.Process.process_material">process_material() (saltproc.Process method)</a>
 </li>
   </ul></td>
 </tr></table>
 
-<h2 id="Q">Q</h2>
+<h2 id="R">R</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_he">q_he (saltproc.separator.Separator attribute)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.read_depcode_metadata">read_depcode_metadata() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_he">(saltproc.sparger.Sparger attribute)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_depcode_metadata">(saltproc.OpenMCDepcode method)</a>
 </li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_salt">q_salt (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_salt">(saltproc.sparger.Sparger attribute)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_depcode_metadata">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="R">R</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor">Reactor (class in saltproc.reactor)</a>
-</li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.read_depleted_materials">read_depleted_materials() (saltproc.abc.Depcode method)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.read_depleted_materials">read_depleted_materials() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_depleted_materials">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_depleted_materials">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_depleted_materials">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_depleted_materials">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">read_k_eds_delta() (saltproc.simulation.Simulation method)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.read_k_eds_delta">read_k_eds_delta() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_main_input">read_main_input() (in module saltproc.app)</a>
+      <li><a href="api/generated/app.read_main_input.html#app.read_main_input">read_main_input() (in module app)</a>
 </li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.read_neutronics_parameters">read_neutronics_parameters() (saltproc.abc.Depcode method)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.read_neutronics_parameters">read_neutronics_parameters() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_neutronics_parameters">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_neutronics_parameters">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_neutronics_parameters">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_neutronics_parameters">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_plaintext_file">read_plaintext_file() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.read_plaintext_file">read_plaintext_file() (saltproc.Depcode method)</a>
 </li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.read_step_metadata">read_step_metadata() (saltproc.abc.Depcode method)</a>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.read_step_metadata">read_step_metadata() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_step_metadata">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.read_step_metadata">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_step_metadata">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.read_step_metadata">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.refill_materials">refill_materials() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.reprocess_materials">reprocess_materials() (in module saltproc.app)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.rebuild_simulation_files">rebuild_simulation_files() (saltproc.Depcode method)</a>
 </li>
-      <li><a href="src/saltproc.app.html#saltproc.app.run">run() (in module saltproc.app)</a>
+      <li><a href="api/generated/app.refill_materials.html#app.refill_materials">refill_materials() (in module app)</a>
 </li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.run_depletion_step">run_depletion_step() (saltproc.abc.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.run_depletion_step">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+      <li><a href="api/generated/saltproc.Materialflow.html#saltproc.Materialflow.replace_components">replace_components() (saltproc.Materialflow method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.run_depletion_step">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/app.reprocess_materials.html#app.reprocess_materials">reprocess_materials() (in module app)</a>
 </li>
-      </ul></li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.runtime_inputfile">runtime_inputfile (saltproc.abc.Depcode attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.runtime_inputfile">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.resolve_include_paths">resolve_include_paths() (saltproc.SerpentDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.runtime_inputfile">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
+      <li><a href="api/generated/app.run.html#app.run">run() (in module app)</a>
 </li>
-      </ul></li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.runtime_matfile">runtime_matfile (saltproc.abc.Depcode attribute)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.run_depletion_step">run_depletion_step() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.runtime_matfile">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.run_depletion_step">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.runtime_matfile">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.run_depletion_step">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -497,158 +326,52 @@ <h2 id="R">R</h2>
 <h2 id="S">S</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc
-
-      <ul>
-        <li><a href="src/saltproc.html#module-saltproc">module</a>
+      <li><a href="api/generated/saltproc.Materialflow.html#saltproc.Materialflow.scale_matflow">scale_matflow() (saltproc.Materialflow method)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.abc
-
-      <ul>
-        <li><a href="src/saltproc.abc.html#module-saltproc.abc">module</a>
+      <li><a href="api/generated/saltproc.Separator.html#saltproc.Separator">Separator (class in saltproc)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.app
-
-      <ul>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">module</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode">SerpentDepcode (class in saltproc)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.materialflow
-
-      <ul>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">module</a>
+      <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.set_power_load">set_power_load() (saltproc.SerpentDepcode method)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.openmc_depcode
-
-      <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#module-saltproc.openmc_depcode">module</a>
+      <li><a href="api/generated/saltproc.Sparger.html#id3">sherwood() (saltproc.Sparger method)</a>, <a href="api/generated/saltproc.Sparger.html#saltproc.Sparger.sherwood">[1]</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.process
-
-      <ul>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">module</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation">Simulation (class in saltproc)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.reactor
-
-      <ul>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">module</a>
+      <li><a href="api/generated/saltproc.Sparger.html#saltproc.Sparger">Sparger (class in saltproc)</a>
 </li>
-      </ul></li>
-      <li>
-    saltproc.separator
-
-      <ul>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.serpent_depcode
-
-      <ul>
-        <li><a href="src/saltproc.serpent_depcode.html#module-saltproc.serpent_depcode">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.simulation
-
-      <ul>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">module</a>
-</li>
-      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc.sparger
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.version
-
-      <ul>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">module</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">scale_matflow() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator">Separator (class in saltproc.separator)</a>
-</li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode">SerpentDepcode (class in saltproc.serpent_depcode)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.store_after_repr">store_after_repr() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.set_power_load">set_power_load() (saltproc.serpent_depcode.SerpentDepcode method)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.store_depcode_metadata">store_depcode_metadata() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.sparger.html#id7">sherwood() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[1]</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.store_mat_data">store_mat_data() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation">Simulation (class in saltproc.simulation)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.store_step_metadata">store_step_metadata() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger">Sparger (class in saltproc.sparger)</a>
+      <li><a href="api/generated/saltproc.Simulation.html#saltproc.Simulation.store_step_neutronics_parameters">store_step_neutronics_parameters() (saltproc.Simulation method)</a>
 </li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.step_metadata">step_metadata (saltproc.abc.Depcode attribute)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.switch_to_next_geometry">switch_to_next_geometry() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.step_metadata">(saltproc.openmc_depcode.OpenMCDepcode attribute)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.switch_to_next_geometry">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.step_metadata">(saltproc.serpent_depcode.SerpentDepcode attribute)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">store_after_repr() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">store_mat_data() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">store_run_init_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">store_run_step_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.switch_to_next_geometry">switch_to_next_geometry() (saltproc.abc.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.switch_to_next_geometry">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
-</li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.switch_to_next_geometry">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.switch_to_next_geometry">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
 </tr></table>
 
-<h2 id="T">T</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.temp_room">temp_room (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id8">(saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_room">[1]</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_salt">temp_salt (saltproc.sparger.Sparger attribute)</a>
-</li>
-  </ul></td>
-</tr></table>
-
 <h2 id="U">U</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.update_depletable_materials">update_depletable_materials() (saltproc.abc.Depcode method)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.update_depletable_materials">update_depletable_materials() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.update_depletable_materials">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.update_depletable_materials">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.update_depletable_materials">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.update_depletable_materials">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
@@ -657,19 +380,19 @@ <h2 id="U">U</h2>
 <h2 id="W">W</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_depletion_settings">write_depletion_settings() (saltproc.openmc_depcode.OpenMCDepcode method)</a>
+      <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_depletion_settings">write_depletion_settings() (saltproc.OpenMCDepcode method)</a>
 </li>
-      <li><a href="src/saltproc.abc.html#saltproc.abc.Depcode.write_runtime_input">write_runtime_input() (saltproc.abc.Depcode method)</a>
+      <li><a href="api/generated/saltproc.Depcode.html#saltproc.Depcode.write_runtime_input">write_runtime_input() (saltproc.Depcode method)</a>
 
       <ul>
-        <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_runtime_input">(saltproc.openmc_depcode.OpenMCDepcode method)</a>
+        <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_runtime_input">(saltproc.OpenMCDepcode method)</a>
 </li>
-        <li><a href="src/saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.write_runtime_input">(saltproc.serpent_depcode.SerpentDepcode method)</a>
+        <li><a href="api/generated/saltproc.SerpentDepcode.html#saltproc.SerpentDepcode.write_runtime_input">(saltproc.SerpentDepcode method)</a>
 </li>
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_saltproc_openmc_tallies">write_saltproc_openmc_tallies() (saltproc.openmc_depcode.OpenMCDepcode method)</a>
+      <li><a href="api/generated/saltproc.OpenMCDepcode.html#saltproc.OpenMCDepcode.write_saltproc_openmc_tallies">write_saltproc_openmc_tallies() (saltproc.OpenMCDepcode method)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -704,11 +427,6 @@ <h2 id="W">W</h2>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="genindex.html">master</a></dd>
diff --git a/master/index.html b/master/index.html
index 71e0e2ee3..8193fda77 100644
--- a/master/index.html
+++ b/master/index.html
@@ -45,10 +45,12 @@
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -79,12 +81,11 @@
   <section id="saltproc">
 <h1>SaltProc<a class="headerlink" href="#saltproc" title="Permalink to this heading">¶</a></h1>
 <p><strong>SaltProc</strong> is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the <a class="reference external" href="http://montecarlo.vtt.fi">Serpent2</a> or <a class="reference external" href="https://openmc.org/">OpenMC</a> Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
+calculations. It couples directly with depletion-capable transport solvers to enable online reprocessing system modeling in depletion
 calculations.</p>
 <p><strong>SaltProc</strong> welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including <a class="reference external" href="http://pyne.io/">pyne</a>, <a class="reference external" href="http://numpy.org">numpy</a>, <a class="reference external" href="http://matplotlib.org">matplotlib</a>,
-<a class="reference external" href="http://networkx.github.io">networkx</a>, and <a class="reference external" href="https://pydotplus.readthedocs.io/">pydotplus</a>.</p>
+in the Scientific Python ecosystem including <a class="reference external" href="http://openmc.org/">openmc</a>, <a class="reference external" href="http://numpy.org">numpy</a>, <a class="reference external" href="http://matplotlib.org">matplotlib</a>,
+<a class="reference external" href="http://networkx.github.io">networkx</a>, and <a class="reference external" href="https://pypi.org/project/pydot/">pydot</a>.</p>
 <section id="documentation">
 <h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
@@ -92,10 +93,12 @@ <h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 </div>
@@ -165,11 +168,6 @@ <h2>License<a class="headerlink" href="#license" title="Permalink to this headin
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="index.html">master</a></dd>
diff --git a/master/installation.html b/master/installation.html
index eec500489..878133786 100644
--- a/master/installation.html
+++ b/master/installation.html
@@ -45,16 +45,17 @@
               <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Installation</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="#note-on-installing-openmc">Note on installing OpenMC</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#cross-section-configuration">Cross Section Configuration</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#testing">Testing</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -87,14 +88,14 @@ <h1>Installation<a class="headerlink" href="#installation" title="Permalink to t
 <p>SaltProc has the following dependencies:</p>
 <blockquote>
 <div><ol class="arabic simple">
-<li><p><a class="reference external" href="http://python.org">Python</a> (&gt;=3.5)</p></li>
-<li><p><a class="reference external" href="http://montecarlo.vtt.fi">Serpent</a> (&gt;=2.1.31)</p></li>
-<li><p><a class="reference external" href="http://pyne.io">PyNE</a> (&gt;=0.5.11)</p></li>
-<li><p><a class="reference external" href="https://openmc.org/">OpenMC</a> (&gt;=0.13.0)</p></li>
-<li><p><a class="reference external" href="http://numpy.org">NumPy</a> (&gt;=1.14.0)</p></li>
+<li><p><a class="reference external" href="http://python.org">python</a> (&gt;=3.5)</p></li>
+<li><p><a class="reference external" href="http://montecarlo.vtt.fi">serpent</a> (&gt;=2.1.31)</p></li>
+<li><p><a class="reference external" href="https://serpent-tools.readthedocs.io/en/master/index.html">serpentTools</a></p></li>
+<li><p><a class="reference external" href="https://openmc.org/">openmc</a> (&gt;=0.13.0)</p></li>
+<li><p><a class="reference external" href="http://numpy.org">numpy</a> (&gt;=1.14.0)</p></li>
 <li><p><a class="reference external" href="http://pytables.org">PyTables</a></p></li>
-<li><p><a class="reference external" href="http://networkx.github.io">NetworkX</a></p></li>
-<li><p><a class="reference external" href="https://pydotplus.readthedocs.io/">PyDotPlus</a></p></li>
+<li><p><a class="reference external" href="http://networkx.github.io">networkx</a></p></li>
+<li><p><a class="reference external" href="https://github.com/pydot/pydot">pydot</a></p></li>
 <li><p><a class="reference external" href="https://github.com/Julian/jsonschema">jsonschema</a></p></li>
 </ol>
 </div></blockquote>
@@ -103,7 +104,6 @@ <h1>Installation<a class="headerlink" href="#installation" title="Permalink to t
 <li><p><a class="reference external" href="https://docs.pytest.org">pytest</a> (for testing)</p></li>
 <li><p><a class="reference external" href="https://www.sphinx-doc.org">sphinx</a> and <a class="reference external" href="https://sphinx-rtd-theme.readthedocs.io">sphinx-rtd-theme</a> (for building documentation)</p></li>
 <li><p><a class="reference external" href="http://matplotlib.org">matplotlib</a></p></li>
-<li><p><a class="reference external" href="http://vitables.org">ViTables</a></p></li>
 </ol>
 </dd>
 </dl>
@@ -111,16 +111,11 @@ <h1>Installation<a class="headerlink" href="#installation" title="Permalink to t
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone git@github.com:arfc/saltproc.git
 </pre></div>
 </div>
-<section id="note-on-installing-openmc">
-<h2>Note on installing OpenMC<a class="headerlink" href="#note-on-installing-openmc" title="Permalink to this heading">¶</a></h2>
-<p>The <code class="docutils literal notranslate"><span class="pre">conda-forge</span></code> build of OpenMC 0.13.0 cannot be installed alongside the <code class="docutils literal notranslate"><span class="pre">conda-forge</span></code> build of PyNE due to a conflict in the pinned HDF5 versions required by those builds. Since both are dependencies, users will need to pick one to install from source. We recommend users install OpenMC from source as it has a more active community and a step-by-step guide on how to install it from source on most machines. For Ubuntu users, consider using the <a class="reference external" href="https://github.com/yardasol/ubuntu-nuclear-software-installer">ubuntu-nuclear-software-installer</a>
-script to install OpenMC from source.</p>
-<p>Otherwise, all of the dependencies are readily available through the <a class="reference external" href="https://docs.conda.io/en/latest/">conda package manager</a>.</p>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
 <p>We recommend using the <a class="reference external" href="https://github.com/mamba-org/mamba">mamba</a> CLI tool to install packages quickly. SaltProc has a compltex package dependency structure which can result is long environment solve times in the default <code class="docutils literal notranslate"><span class="pre">conda</span></code> solver. <code class="docutils literal notranslate"><span class="pre">mamba</span></code> is a reimplementation of <code class="docutils literal notranslate"><span class="pre">conda</span></code> in <code class="docutils literal notranslate"><span class="pre">C++</span></code> and we have found it is significantly faster.</p>
 </div>
-<p>You can download the required ones using <code class="docutils literal notranslate"><span class="pre">conda</span></code> on the provided <code class="docutils literal notranslate"><span class="pre">environment.yml</span></code>
+<p>You can download the required packages using <code class="docutils literal notranslate"><span class="pre">conda</span></code> on the provided <code class="docutils literal notranslate"><span class="pre">environment.yml</span></code>
 file in the repository:</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span> saltproc/
 conda env create -f environment.yml
@@ -133,7 +128,6 @@ <h2>Note on installing OpenMC<a class="headerlink" href="#note-on-installing-ope
 </pre></div>
 </div>
 <p>Please let us know if you run into trouble.</p>
-</section>
 <section id="cross-section-configuration">
 <h2>Cross Section Configuration<a class="headerlink" href="#cross-section-configuration" title="Permalink to this heading">¶</a></h2>
 <p>SaltProc can use any cross section library that its depletion codes can. Currently supported depletion codes and their guides on cross section configuration are listed below:</p>
@@ -207,11 +201,6 @@ <h2>Testing<a class="headerlink" href="#testing" title="Permalink to this headin
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/installation.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/installation.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="installation.html">master</a></dd>
diff --git a/master/fileformatspec/databasefile.html b/master/io_formats/databasefile.html
similarity index 94%
rename from master/fileformatspec/databasefile.html
rename to master/io_formats/databasefile.html
index d5a421030..62f5ea172 100644
--- a/master/fileformatspec/databasefile.html
+++ b/master/io_formats/databasefile.html
@@ -45,9 +45,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">File Format Specifications</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="index.html#input-files">Input Files</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="index.html#output-files">Output Files</a><ul class="current">
@@ -76,7 +78,7 @@
           <li class="breadcrumb-item"><a href="index.html">File Format Specifications</a></li>
       <li class="breadcrumb-item active">HDF5 Output File</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/databasefile.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/databasefile.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -85,7 +87,7 @@
            <div itemprop="articleBody">
              
   <section id="hdf5-output-file">
-<h1>HDF5 Output File<a class="headerlink" href="#hdf5-output-file" title="Permalink to this heading">¶</a></h1>
+<span id="results-file"></span><h1>HDF5 Output File<a class="headerlink" href="#hdf5-output-file" title="Permalink to this heading">¶</a></h1>
 <p>This file format specification uses the <a class="reference external" href="https://www.pytables.org/FAQ.html#what-kind-of-containers-does-pytables-implement">pytables terminology</a>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Leaves</dt>
@@ -168,11 +170,6 @@ <h1>HDF5 Output File<a class="headerlink" href="#hdf5-output-file" title="Permal
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="databasefile.html">master</a></dd>
diff --git a/master/fileformatspec/depcode_input.html b/master/io_formats/depcode_input.html
similarity index 96%
rename from master/fileformatspec/depcode_input.html
rename to master/io_formats/depcode_input.html
index efd576c5a..d241508a7 100644
--- a/master/fileformatspec/depcode_input.html
+++ b/master/io_formats/depcode_input.html
@@ -46,9 +46,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">File Format Specifications</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="index.html#input-files">Input Files</a><ul class="current">
 <li class="toctree-l3"><a class="reference internal" href="saltproc_input.html">SaltProc Input File</a></li>
@@ -89,7 +91,7 @@
           <li class="breadcrumb-item"><a href="index.html">File Format Specifications</a></li>
       <li class="breadcrumb-item active"><code class="docutils literal notranslate"><span class="pre">depcode</span></code> Properties</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/depcode_input.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/depcode_input.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -198,7 +200,7 @@ <h2>Generic properties<a class="headerlink" href="#generic-properties" title="Pe
 </div></blockquote>
 </section>
 <section id="zaid-convention">
-<h3><code class="docutils literal notranslate"><span class="pre">zaid_convention</span></code><a class="headerlink" href="#zaid-convention" title="Permalink to this heading">¶</a></h3>
+<span id="zaid-convention-property"></span><h3><code class="docutils literal notranslate"><span class="pre">zaid_convention</span></code><a class="headerlink" href="#zaid-convention" title="Permalink to this heading">¶</a></h3>
 <blockquote>
 <div><dl class="field-list simple">
 <dt class="field-odd">description</dt>
@@ -324,7 +326,7 @@ <h3><code class="docutils literal notranslate"><span class="pre">zaid_convention
 </div></blockquote>
 </section>
 <section id="depletion-settings">
-<span id="opemc-depletion-settings-property"></span><h3><code class="docutils literal notranslate"><span class="pre">depletion_settings</span></code><a class="headerlink" href="#depletion-settings" title="Permalink to this heading">¶</a></h3>
+<span id="openmc-depletion-settings-property"></span><h3><code class="docutils literal notranslate"><span class="pre">depletion_settings</span></code><a class="headerlink" href="#depletion-settings" title="Permalink to this heading">¶</a></h3>
 <blockquote>
 <div><dl class="field-list simple">
 <dt class="field-odd">description</dt>
@@ -500,26 +502,6 @@ <h3><code class="docutils literal notranslate"><span class="pre">fission_q</span
 </dl>
 </div></blockquote>
 </section>
-<section id="dilute-initial">
-<h3><code class="docutils literal notranslate"><span class="pre">dilute_initial</span></code><a class="headerlink" href="#dilute-initial" title="Permalink to this heading">¶</a></h3>
-<blockquote>
-<div><dl class="field-list simple">
-<dt class="field-odd">description</dt>
-<dd class="field-odd"><p>Initial atom density to add for nuclides that are zero in initial
-condition.</p>
-</dd>
-<dt class="field-even">type</dt>
-<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">number</span></code></p>
-</dd>
-<dt class="field-odd">minimum</dt>
-<dd class="field-odd"><p>0</p>
-</dd>
-<dt class="field-even">default</dt>
-<dd class="field-even"><p>1000</p>
-</dd>
-</dl>
-</div></blockquote>
-</section>
 <section id="fission-yield-mode">
 <h3><code class="docutils literal notranslate"><span class="pre">fission_yield_mode</span></code><a class="headerlink" href="#fission-yield-mode" title="Permalink to this heading">¶</a></h3>
 <blockquote>
@@ -788,11 +770,6 @@ <h3><code class="docutils literal notranslate"><span class="pre">nuclides</span>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="depcode_input.html">master</a></dd>
diff --git a/master/fileformatspec/index.html b/master/io_formats/index.html
similarity index 85%
rename from master/fileformatspec/index.html
rename to master/io_formats/index.html
index cd3018210..5fefd47e3 100644
--- a/master/fileformatspec/index.html
+++ b/master/io_formats/index.html
@@ -21,7 +21,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="SaltProc Input File" href="saltproc_input.html" />
-    <link rel="prev" title="Contributing" href="../devguide/contributing.html" /> 
+    <link rel="prev" title="saltproc.Simulation" href="../api/generated/saltproc.Simulation.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -46,9 +46,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">File Format Specifications</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#input-files">Input Files</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="saltproc_input.html">SaltProc Input File</a></li>
@@ -82,7 +84,7 @@
       <li><a href="../index.html" class="icon icon-home"></a></li>
       <li class="breadcrumb-item active">File Format Specifications</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/index.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/index.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -91,9 +93,9 @@
            <div itemprop="articleBody">
              
   <section id="file-format-specifications">
-<span id="fileformatspec"></span><h1>File Format Specifications<a class="headerlink" href="#file-format-specifications" title="Permalink to this heading">¶</a></h1>
+<span id="io-formats"></span><h1>File Format Specifications<a class="headerlink" href="#file-format-specifications" title="Permalink to this heading">¶</a></h1>
 <section id="input-files">
-<span id="fileformatspect-input-files"></span><h2>Input Files<a class="headerlink" href="#input-files" title="Permalink to this heading">¶</a></h2>
+<span id="io-formats-input-files"></span><h2>Input Files<a class="headerlink" href="#input-files" title="Permalink to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="saltproc_input.html">SaltProc Input File</a></li>
@@ -104,7 +106,7 @@
 </div>
 </section>
 <section id="output-files">
-<span id="fileformatspec-output-files"></span><h2>Output Files<a class="headerlink" href="#output-files" title="Permalink to this heading">¶</a></h2>
+<span id="io-formats-output-files"></span><h2>Output Files<a class="headerlink" href="#output-files" title="Permalink to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="databasefile.html">HDF5 Output File</a></li>
@@ -117,7 +119,7 @@
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../devguide/contributing.html" class="btn btn-neutral float-left" title="Contributing" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../api/generated/saltproc.Simulation.html" class="btn btn-neutral float-left" title="saltproc.Simulation" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="saltproc_input.html" class="btn btn-neutral float-right" title="SaltProc Input File" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
@@ -145,11 +147,6 @@
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="index.html">master</a></dd>
diff --git a/master/fileformatspec/reactor_input.html b/master/io_formats/reactor_input.html
similarity index 95%
rename from master/fileformatspec/reactor_input.html
rename to master/io_formats/reactor_input.html
index c48cb152b..a40cb1987 100644
--- a/master/fileformatspec/reactor_input.html
+++ b/master/io_formats/reactor_input.html
@@ -46,9 +46,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">File Format Specifications</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="index.html#input-files">Input Files</a><ul class="current">
 <li class="toctree-l3"><a class="reference internal" href="saltproc_input.html">SaltProc Input File</a></li>
@@ -88,7 +90,7 @@
           <li class="breadcrumb-item"><a href="index.html">File Format Specifications</a></li>
       <li class="breadcrumb-item active"><code class="docutils literal notranslate"><span class="pre">reactor</span></code> Properties</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/reactor_input.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/reactor_input.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -210,7 +212,7 @@
 </div></blockquote>
 </section>
 <section id="timestep-units">
-<span id="timestep-unites-property"></span><h2><code class="docutils literal notranslate"><span class="pre">timestep_units</span></code><a class="headerlink" href="#timestep-units" title="Permalink to this heading">¶</a></h2>
+<span id="timestep-units-property"></span><h2><code class="docutils literal notranslate"><span class="pre">timestep_units</span></code><a class="headerlink" href="#timestep-units" title="Permalink to this heading">¶</a></h2>
 <blockquote>
 <div><dl class="field-list simple">
 <dt class="field-odd">description</dt>
@@ -259,11 +261,6 @@
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="reactor_input.html">master</a></dd>
diff --git a/master/fileformatspec/saltproc_input.html b/master/io_formats/saltproc_input.html
similarity index 86%
rename from master/fileformatspec/saltproc_input.html
rename to master/io_formats/saltproc_input.html
index bef149704..9c18f311f 100644
--- a/master/fileformatspec/saltproc_input.html
+++ b/master/io_formats/saltproc_input.html
@@ -46,9 +46,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">File Format Specifications</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="index.html#input-files">Input Files</a><ul class="current">
 <li class="toctree-l3 current"><a class="current reference internal" href="#">SaltProc Input File</a><ul>
@@ -57,6 +59,8 @@
 <li class="toctree-l4"><a class="reference internal" href="#output-path"><code class="docutils literal notranslate"><span class="pre">output_path</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#n-depletion-steps"><code class="docutils literal notranslate"><span class="pre">n_depletion_steps</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#mpi-args"><code class="docutils literal notranslate"><span class="pre">mpi_args</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#rebuild-saltproc-results"><code class="docutils literal notranslate"><span class="pre">rebuild_saltproc_results</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="#run-without-reprocessing"><code class="docutils literal notranslate"><span class="pre">run_without_reprocessing</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#depcode"><code class="docutils literal notranslate"><span class="pre">depcode</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#simulation"><code class="docutils literal notranslate"><span class="pre">simulation</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#reactor"><code class="docutils literal notranslate"><span class="pre">reactor</span></code></a></li>
@@ -90,7 +94,7 @@
           <li class="breadcrumb-item"><a href="index.html">File Format Specifications</a></li>
       <li class="breadcrumb-item active">SaltProc Input File</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/saltproc_input.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/saltproc_input.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -192,6 +196,39 @@
 </dl>
 </div></blockquote>
 </section>
+<section id="rebuild-saltproc-results">
+<span id="rebuild-saltproc-results-property"></span><h2><code class="docutils literal notranslate"><span class="pre">rebuild_saltproc_results</span></code><a class="headerlink" href="#rebuild-saltproc-results" title="Permalink to this heading">¶</a></h2>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">description</dt>
+<dd class="field-odd"><p>Flag to reconstruct the <code class="docutils literal notranslate"><span class="pre">saltproc_results.h5</span></code> files from the stepwise
+depletion simulation results.</p>
+</dd>
+<dt class="field-even">type</dt>
+<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">boolean</span></code></p>
+</dd>
+<dt class="field-odd">default</dt>
+<dd class="field-odd"><p><code class="docutils literal notranslate"><span class="pre">false</span></code></p>
+</dd>
+</dl>
+</div></blockquote>
+</section>
+<section id="run-without-reprocessing">
+<span id="run-without-reprocessing-property"></span><h2><code class="docutils literal notranslate"><span class="pre">run_without_reprocessing</span></code><a class="headerlink" href="#run-without-reprocessing" title="Permalink to this heading">¶</a></h2>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">description</dt>
+<dd class="field-odd"><p>Flag to run SaltProc with no material reprocessing.</p>
+</dd>
+<dt class="field-even">type</dt>
+<dd class="field-even"><p><code class="docutils literal notranslate"><span class="pre">boolean</span></code></p>
+</dd>
+<dt class="field-odd">default</dt>
+<dd class="field-odd"><p><code class="docutils literal notranslate"><span class="pre">false</span></code></p>
+</dd>
+</dl>
+</div></blockquote>
+</section>
 <section id="depcode">
 <span id="depcode-property"></span><h2><code class="docutils literal notranslate"><span class="pre">depcode</span></code><a class="headerlink" href="#depcode" title="Permalink to this heading">¶</a></h2>
 <blockquote>
@@ -283,11 +320,6 @@
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="saltproc_input.html">master</a></dd>
diff --git a/master/fileformatspec/simulation_input.html b/master/io_formats/simulation_input.html
similarity index 96%
rename from master/fileformatspec/simulation_input.html
rename to master/io_formats/simulation_input.html
index d70e7d7e4..b11d41a91 100644
--- a/master/fileformatspec/simulation_input.html
+++ b/master/io_formats/simulation_input.html
@@ -46,9 +46,11 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">File Format Specifications</a><ul class="current">
 <li class="toctree-l2 current"><a class="reference internal" href="index.html#input-files">Input Files</a><ul class="current">
 <li class="toctree-l3"><a class="reference internal" href="saltproc_input.html">SaltProc Input File</a></li>
@@ -86,7 +88,7 @@
           <li class="breadcrumb-item"><a href="index.html">File Format Specifications</a></li>
       <li class="breadcrumb-item active"><code class="docutils literal notranslate"><span class="pre">simulation</span></code> Properties</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/fileformatspec/simulation_input.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/io_formats/simulation_input.rst.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
@@ -195,11 +197,6 @@
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="simulation_input.html">master</a></dd>
diff --git a/v0.4.0/devguide/index.html b/master/methods/index.html
similarity index 72%
rename from v0.4.0/devguide/index.html
rename to master/methods/index.html
index 146a7e58e..8dff6b7a2 100644
--- a/v0.4.0/devguide/index.html
+++ b/master/methods/index.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Developer’s Guide &mdash; Saltproc 0.4.0 documentation</title>
+  <title>Theory and Methodology &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -20,7 +20,7 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Contributing" href="contributing.html" />
+    <link rel="next" title="Reprocessing Methods" href="reprocessing.html" />
     <link rel="prev" title="Release notes for v0.3.0" href="../releasenotes/v0.3.0.html" /> 
 </head>
 
@@ -32,7 +32,7 @@
             <a href="../index.html" class="icon icon-home"> Saltproc
           </a>
               <div class="version">
-                0.4.0
+                0.5.dev
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -46,12 +46,15 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">Developer’s Guide</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="contributing.html">Contributing</a></li>
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-  <section id="developer-s-guide">
-<span id="devguide"></span><h1>Developer’s Guide<a class="headerlink" href="#developer-s-guide" title="Permalink to this heading">¶</a></h1>
-<p>Welcome to the SaltProc developer’s guide. Here you’ll find
-all the information you need to be an efficient and effective contributor
-to SaltProc.</p>
+  <section id="theory-and-methodology">
+<span id="methods"></span><h1>Theory and Methodology<a class="headerlink" href="#theory-and-methodology" title="Permalink to this heading">¶</a></h1>
+<p>Welcome to the SaltProc theory and methodology guide. Here you’ll find details
+about the SaltProc’s program flow, design, mathematical background, and more.</p>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
-<p>The SaltProc developer’s guide is a work in progress.
+<p>The SaltProc theory manual is a work in progress.
 Information contained within may change, so make sure to check the
 release notes for updates!</p>
 </div>
-<p>If you’re new to software development, please familiarize yourself with the
-<a class="reference external" href="https://git-scm.com/book/en/v2/Getting-Started-About-Version-Control">git workflow</a> before getting started. We’ll be using terminoigy
-in this developer’s guide that relies on understanding it.</p>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">Reprocessing Methods</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#material-flows">Material flows</a><ul>
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+             
+  <section id="reprocessing-methods">
+<span id="methods-reprocessing"></span><h1>Reprocessing Methods<a class="headerlink" href="#reprocessing-methods" title="Permalink to this heading">¶</a></h1>
+<p>SaltProc models separations and feeds using three different data structures:</p>
+<section id="material-flows">
+<h2>Material flows<a class="headerlink" href="#material-flows" title="Permalink to this heading">¶</a></h2>
+<p>A material flow represents a material with a given
+volume <span class="math notranslate nohighlight">\(V\)</span>, density <span class="math notranslate nohighlight">\(\rho\)</span>, temperature <span class="math notranslate nohighlight">\(T\)</span>, and nuclide composition <span class="math notranslate nohighlight">\(\mathbf{N}\)</span> flowing in or out
+of a processing component.
+It can also include information such as void fraction. <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a>
+objects contain the prior mentioned quantities as attributes, as well as
+methods to perform the following:</p>
+<ol class="arabic simple">
+<li><p>Add two <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a> objects together</p>
+<ol class="loweralpha simple">
+<li><p>The mass of the sum is <span class="math notranslate nohighlight">\(m_{1+2} = m_{1} + m_{2}\)</span></p></li>
+<li><p>The composition of the sum is <span class="math notranslate nohighlight">\(\mathbf{N}_{1+2} = \frac{\mathbf{N}_{1} * m_{1} + \mathbf{N}_{2} * m_{2}}{m_{1} + m_{2}}\)</span></p></li>
+<li><p>The temperature and density are assumed to be equal to the first <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a> object</p></li>
+</ol>
+</li>
+<li><p>Scale a <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a> object by a constant, specifically the mass and volume of the <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a> object.</p></li>
+</ol>
+<p><a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a>. objects are used to store information about
+materials in reprocessing as well as materials being fed into the system.</p>
+<section id="processes">
+<h3>Processes<a class="headerlink" href="#processes" title="Permalink to this heading">¶</a></h3>
+<p>A process is an abstraction of chemical separation, extraction, or some
+other removal. Two processes commonly used in Gls{msr}s include
+extracting metals using gas sparging and filtering. In SaltProc,
+<a class="reference internal" href="../api/generated/saltproc.Process.html#saltproc.Process" title="saltproc.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Process</span></code></a> objects contain data and functions to perform their
+associated processing task. At a minimum, a <a class="reference internal" href="../api/generated/saltproc.Process.html#saltproc.Process" title="saltproc.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Process</span></code></a> object includes
+the following</p>
+<ol class="arabic simple">
+<li><p>A mass flow rate, <span class="math notranslate nohighlight">\(\dot{m}\)</span>, which specifies the mass of fuel salt a process can operate on per unit time</p></li>
+<li><p>An extraction efficiency, <span class="math notranslate nohighlight">\(\epsilon\)</span>, for target element(s)</p></li>
+<li><p>A method to apply the process on a <a class="reference internal" href="../api/generated/saltproc.Materialflow.html#saltproc.Materialflow" title="saltproc.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Materialflow</span></code></a> object</p></li>
+</ol>
+</section>
+<section id="graphs">
+<h3>Graphs<a class="headerlink" href="#graphs" title="Permalink to this heading">¶</a></h3>
+<p>A graph is a mathematical object that connects <em>nodes</em>
+with <em>edges</em>. More formally,
+a graph is a pair of sets, <span class="math notranslate nohighlight">\((V, E)\)</span>, where</p>
+<ul class="simple">
+<li><p><span class="math notranslate nohighlight">\(V\)</span> is a set whose elements are called nodes</p></li>
+<li><p><span class="math notranslate nohighlight">\(E\)</span> is a set whose elements are pairs of elements in <span class="math notranslate nohighlight">\(V\)</span></p></li>
+</ul>
+<p>A directed graph is a graph in which the elements are ordered pairs of elements
+in <span class="math notranslate nohighlight">\(V\)</span>. This gives the edges a direction. SaltProc uses directed graphs to
+model the order and path in which processes operate on materials.</p>
+<p>Processes and feeds are defined in one JSON input file, and the graph linking
+processes is defined in a DOT file. The process graph must be directed and
+acyclic in order to work with SaltProc. At runtime,
+SaltProc reads this input file to create <a class="reference internal" href="../api/generated/saltproc.Process.html#saltproc.Process" title="saltproc.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.Process</span></code></a> objects for each item
+in the file. Every process file must have at least a <code class="xref py py-class docutils literal notranslate"><span class="pre">core_outlet</span></code> and
+<code class="xref py py-class docutils literal notranslate"><span class="pre">core_inlet</span></code> Process.</p>
+</section>
+</section>
+<section id="material-reprocessing">
+<h2>Material reprocessing<a class="headerlink" href="#material-reprocessing" title="Permalink to this heading">¶</a></h2>
+<p>Recall that SaltProc uses a <em>batchwise</em> reprocessing scheme.
+Let <span class="math notranslate nohighlight">\(\mathbf{n}(t)^{j}\)</span> denote the nuclide mass vector for depletable material
+<span class="math notranslate nohighlight">\(j\)</span> as a function of time. For each depletable material <span class="math notranslate nohighlight">\(j\)</span>, the depletion
+solver numerically integrates the equation</p>
+<div class="math notranslate nohighlight">
+\[\frac{d\mathbf{n}^{j}(t)}{dt} = \mathbf{A}(\mathbf{n}^{j}(t), t)\]</div>
+<p>from time <span class="math notranslate nohighlight">\(i\)</span> to time <span class="math notranslate nohighlight">\(i+1\)</span> to get <span class="math notranslate nohighlight">\(\mathbf{n}^{j}(i+1)\)</span>, where <span class="math notranslate nohighlight">\(A\)</span> is the
+depletion matrix. This sequence is called a <strong>depletion step</strong>.</p>
+<p>Now, let the mass and volume of depletable material <span class="math notranslate nohighlight">\(j\)</span> be
+<span class="math notranslate nohighlight">\(m^{j}\)</span> and <span class="math notranslate nohighlight">\(V^{j}\)</span> respectively. Let the mass flow rate of process <span class="math notranslate nohighlight">\(p\)</span> be
+<span class="math notranslate nohighlight">\(\dot{m}_{p}\)</span>. At the end of each depletion step, SaltProc constructs process
+paths from the process graph defined in the DOT file, and sequentially applies
+each process <span class="math notranslate nohighlight">\(p\)</span> in each path <span class="math notranslate nohighlight">\(r\)</span> to the relevant materials to obtain through
+and waste streams for each material. SaltProc tracks the mass and nuclide vector for both through and waste streams. For through
+streams, SaltProc also tracks the volume and mass flow rate. For every node
+<span class="math notranslate nohighlight">\(p\in[0,l]\)</span> where <span class="math notranslate nohighlight">\(0\)</span> represents the core outlet and <span class="math notranslate nohighlight">\(l\)</span> represents the core
+inlet, in the path <span class="math notranslate nohighlight">\(r\)</span>, for the through streams we have</p>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_{\text{through, }p,r} = \mathbf{n}^{j}_{\text{through, }p-1,r} (1 - \pmb{\epsilon}^{j}_{p,r})\]</div>
+<div class="math notranslate nohighlight">
+\[m^{j}_{\text{through, } p,r} = \alpha_{p} m^{j}_{\text{through, }p-1,r} - m^{j}_{\text{waste, }p,r}\]</div>
+<div class="math notranslate nohighlight">
+\[V^{j}_{\text{through, }p,r} = \alpha_{p}V^{j}_{\text{through, }p-1,r}\]</div>
+<p>where</p>
+<div class="math notranslate nohighlight">
+\[\alpha_{p,r} = \frac{\dot{m}_{p,r}}{\dot{m}_{\text{outlet}}}\]</div>
+<p>and the initial conditions are</p>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_{\text{through, }0,r} = \mathbf{n}^{j}(i+1)\]</div>
+<div class="math notranslate nohighlight">
+\[m^{j}_{\text{through, }0,r} = \rho^{j}(i+1)V^{j}(i+1)\]</div>
+<div class="math notranslate nohighlight">
+\[V^{j}_{\text{through, }0,r} = V^{j}(i+1)\]</div>
+<p>Similarly, for the waste streams, we have</p>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_{\text{waste, }p,r} = \mathbf{n}^{j}_{\text{through, }p-1,r} \cdot \pmb{\epsilon}^{j}_{p,r}\]</div>
+<div class="math notranslate nohighlight">
+\[m^{j}_{\text{waste, }p,r} = \alpha_{p,r} m^{j}_{\text{through, }p-1,r} \langle\mathbf{1},\mathbf{n}^{j}_{\text{waste, }p,r}\rangle\]</div>
+<p>SaltProc does not currently track the volume and mass flow rate of waste streams.
+In practice, since it is extremely resource intensive to separate individual
+isotopes, SaltProc only allows extraction efficiencies to be defined for
+elements. Additionally, any chemical processing would only act on elements, so there is little point in having isotope specific extration efficiencies. So, for any isotope <span class="math notranslate nohighlight">\(a\)</span> of xenon,
+<span class="math notranslate nohighlight">\(\epsilon_{\ce{^{a}Xe}} = \epsilon_{\ce{^{a^{\prime}}Xe}}\)</span>  where
+<span class="math notranslate nohighlight">\(a^{\prime} \in \text{isotopes of Xe}\)</span></p>
+<p>After the recursive computation, SaltProc sums through and waste streams over all
+paths to get the total through stream at the inlet, and the total waste stream at
+the inlet which represents all material removed during reprocessing. In practice,
+we are working with nuclide mass fractions, not total masses, so in the program
+there is an expansion and then normalization of the vectors:</p>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_\text{through, inlet, net} = \frac{\sum_{r} m^{j}_{\text{through, inlet, }r} \mathbf{n}^{j}_{\text{through, inlet, }r}}{\sum_{r} m^{j}_{\text{through, inlet, }r}}\]</div>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_{\text{waste, inlet, net}} = \frac{\sum_{r} m^{j}_{\text{waste, inlet, }r} \mathbf{n}^{j}_{\text{waste, inlet, }r}}{m^{j}_{\text{waste, inlet, }r}}\]</div>
+<p>Before running the next depletion step, for any material that has an associated
+feed material defined, SaltProc will add an amount of the feed material
+equivalent to the removed mass so that the mass of fuel salt undergoing depletion
+remains constant. For feed <span class="math notranslate nohighlight">\(j'\)</span> corresponding to material <span class="math notranslate nohighlight">\(j\)</span>, we have</p>
+<div class="math notranslate nohighlight">
+\[\mathbf{n}^{j}_\text{filled} = \frac{m^{j}_{\text{through, }l}\mathbf{n}^{j}_\text{through, inlet, net} +  m^{j}_{\text{removed}}\mathbf{n}^{j'}}{m^{j}_{\text{through, }0}}\]</div>
+<p>where</p>
+<div class="math notranslate nohighlight">
+\[m^{j}_\text{removed} = m^{j}_{\text{through, }0} - m^{j}_{\text{through, }l}\]</div>
+</section>
+</section>
+
+
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+</html>
\ No newline at end of file
diff --git a/master/objects.inv b/master/objects.inv
index 4e359ce27..cd16abb6d 100644
Binary files a/master/objects.inv and b/master/objects.inv differ
diff --git a/master/overview.html b/master/overview.html
index 0a5840207..818dbd4f2 100644
--- a/master/overview.html
+++ b/master/overview.html
@@ -52,10 +52,12 @@
 </li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -84,36 +86,46 @@
            <div itemprop="articleBody">
              
   <section id="overview">
-<h1>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h1>
-<p>SaltProc couples directly with a variety of Monte Carlo neutron transport codes with depletion capabilities and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:</p>
-<ul class="simple">
-<li><p>neutron poison removal with user-defined efficiency,</p></li>
-<li><p>make-up mass loss by fresh fuel injection,</p></li>
-<li><p>reactivity control by adjusting fuel feed rate or reactor geometry (i.e. control rod depth),</p></li>
-<li><p>can model any reactor design,</p></li>
-<li><p>potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).</p></li>
+<span id="saltproc-overview"></span><h1>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h1>
+<p>SaltProc couples directly with a variety of neutron transport codes with
+depletion capabilities and enables sophisticated, multi-component online fuel
+reprocessing system modeling. SaltProc is the first open-source tool for
+liquid-fueled depletion simulations with the following capabilities:</p>
+<blockquote>
+<div><ul class="simple">
+<li><p>Neutron poison removal with user-defined efficiency,</p></li>
+<li><p>Make-up mass loss by fresh fuel injection,</p></li>
+<li><p>Reactivity control by adjusting fuel feed rate or reactor geometry (i.e. control rod depth),</p></li>
+<li><p>Can model any reactor design,</p></li>
+<li><p>Couples with OpenMC and SERPENT (and extendable to other tools such as MCNP or SCALE).</p></li>
 </ul>
+</div></blockquote>
+<p id="supported-codes">Currently supported transport solvers:</p>
+<blockquote>
+<div><ul class="simple">
+<li><p><a class="reference external" href="http://montecarlo.vtt.fi">Serpent2</a></p></li>
+<li><p><a class="reference external" href="https://openmc.org/">OpenMC</a></p></li>
+</ul>
+</div></blockquote>
 <section id="how-saltproc-works">
 <h2>How SaltProc works<a class="headerlink" href="#how-saltproc-works" title="Permalink to this heading">¶</a></h2>
 <p>SaltProc is a driver for Monte Carlo transport codes with depletion capabilities (henceforth referred to as <em>transport-depletion codes</em>) to simulate online fuel salt reprocessing for
 Molten Salt Reactors. It performs following major functions:</p>
 <blockquote>
 <div><ul class="simple">
-<li><p>runs the transport-depletion code</p></li>
-<li><p>parses and stores depleted material data in HDF5</p></li>
-<li><p>modifies parsed material composition (<cite>reprocesses</cite>)</p></li>
-<li><p>creates a new transport-depletion code input file</p></li>
+<li><p>Runs the transport-depletion code</p></li>
+<li><p>Parses and stores depleted material data in HDF5</p></li>
+<li><p>Modifies parsed material composition (<cite>reprocesses</cite>)</p></li>
+<li><p>Creates a new transport-depletion code input file</p></li>
 </ul>
 </div></blockquote>
 <p>The code logic flow is the following:</p>
 <blockquote>
 <div><ol class="arabic simple">
 <li><p>Runs the transport-depletion code (<code class="xref py py-meth docutils literal notranslate"><span class="pre">saltproc.depcode.Depcode.run_depcode()</span></code>)</p></li>
-<li><p>Parses through the output <cite>*_dep.m</cite> file and creates PyNE Material object
+<li><p>Parses through the output <cite>*_dep.m</cite> file and creates Materialflow object
 for each burnable material.</p></li>
-<li><p>Processes Fuel (<a class="reference internal" href="src/saltproc.app.html#saltproc.app.reprocess_materials" title="saltproc.app.reprocess_materials"><code class="xref py py-meth docutils literal notranslate"><span class="pre">saltproc.app.reprocess_materials()</span></code></a> and <a class="reference internal" href="src/saltproc.app.html#saltproc.app.refill_materials" title="saltproc.app.refill_materials"><code class="xref py py-meth docutils literal notranslate"><span class="pre">saltproc.app.refill_materials()</span></code></a>):</p></li>
+<li><p>Processes Fuel (<code class="xref py py-meth docutils literal notranslate"><span class="pre">saltproc.app.reprocess_materials()</span></code> and <code class="xref py py-meth docutils literal notranslate"><span class="pre">saltproc.app.refill_materials()</span></code>):</p></li>
 </ol>
 <blockquote>
 <div><ul class="simple">
@@ -210,11 +222,6 @@ <h2>The Future<a class="headerlink" href="#the-future" title="Permalink to this
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/overview.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/overview.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="overview.html">master</a></dd>
diff --git a/master/py-modindex.html b/master/py-modindex.html
index b8d7f1527..537293658 100644
--- a/master/py-modindex.html
+++ b/master/py-modindex.html
@@ -21,6 +21,10 @@
     <link rel="search" title="Search" href="search.html" />
  
 
+    <script>
+      DOCUMENTATION_OPTIONS.COLLAPSE_INDEX = true;
+    </script>
+
 
 </head>
 
@@ -46,10 +50,12 @@
 <li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -80,73 +86,17 @@
    <h1>Python Module Index</h1>
 
    <div class="modindex-jumpbox">
-   <a href="#cap-s"><strong>s</strong></a>
+   <a href="#cap-a"><strong>a</strong></a>
    </div>
 
    <table class="indextable modindextable">
      <tr class="pcap"><td></td><td>&#160;</td><td></td></tr>
-     <tr class="cap" id="cap-s"><td></td><td>
-       <strong>s</strong></td><td></td></tr>
+     <tr class="cap" id="cap-a"><td></td><td>
+       <strong>a</strong></td><td></td></tr>
      <tr>
-       <td><img src="_static/minus.png" class="toggler"
-              id="toggle-1" style="display: none" alt="-" /></td>
-       <td>
-       <a href="src/saltproc.html#module-saltproc"><code class="xref">saltproc</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.abc.html#module-saltproc.abc"><code class="xref">saltproc.abc</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.app.html#module-saltproc.app"><code class="xref">saltproc.app</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.materialflow.html#module-saltproc.materialflow"><code class="xref">saltproc.materialflow</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.openmc_depcode.html#module-saltproc.openmc_depcode"><code class="xref">saltproc.openmc_depcode</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.process.html#module-saltproc.process"><code class="xref">saltproc.process</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
        <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.reactor.html#module-saltproc.reactor"><code class="xref">saltproc.reactor</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.separator.html#module-saltproc.separator"><code class="xref">saltproc.separator</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.serpent_depcode.html#module-saltproc.serpent_depcode"><code class="xref">saltproc.serpent_depcode</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.simulation.html#module-saltproc.simulation"><code class="xref">saltproc.simulation</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.sparger.html#module-saltproc.sparger"><code class="xref">saltproc.sparger</code></a></td><td>
-       <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.version.html#module-saltproc.version"><code class="xref">saltproc.version</code></a></td><td>
+       <td>
+       <a href="api/generated/app.html#module-app"><code class="xref">app</code></a></td><td>
        <em></em></td></tr>
    </table>
 
@@ -179,11 +129,6 @@ <h1>Python Module Index</h1>
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="py-modindex.html">master</a></dd>
diff --git a/master/releasenotes/index.html b/master/releasenotes/index.html
index fe62ef96b..d5036806f 100644
--- a/master/releasenotes/index.html
+++ b/master/releasenotes/index.html
@@ -21,7 +21,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Release notes for v0.5.0" href="v0.5.0.html" />
-    <link rel="prev" title="SaltProc API" href="../src/index.html" /> 
+    <link rel="prev" title="Examples" href="../examples.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -46,15 +46,17 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Release Notes</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="v0.5.0.html">Release notes for v0.5.0</a></li>
 <li class="toctree-l2"><a class="reference internal" href="v0.4.0.html">Release notes for v0.4.0</a></li>
 <li class="toctree-l2"><a class="reference internal" href="v0.3.0.html">Release notes for v0.3.0</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -97,7 +99,7 @@
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../src/index.html" class="btn btn-neutral float-left" title="SaltProc API" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../examples.html" class="btn btn-neutral float-left" title="Examples" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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@@ -125,11 +127,6 @@
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   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/releasenotes/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="index.html">master</a></dd>
diff --git a/master/releasenotes/template.html b/master/releasenotes/template.html
index 80ae8157a..20dcca8e1 100644
--- a/master/releasenotes/template.html
+++ b/master/releasenotes/template.html
@@ -44,10 +44,12 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -138,11 +140,6 @@ <h2>Reviewers<a class="headerlink" href="#reviewers" title="Permalink to this he
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/releasenotes/template.html">v0.4.0</a></dd>
-    </dl>
     <dl>
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       <dd><a href="template.html">master</a></dd>
diff --git a/master/releasenotes/v0.3.0.html b/master/releasenotes/v0.3.0.html
index e3b8f19e9..9ea91c4b3 100644
--- a/master/releasenotes/v0.3.0.html
+++ b/master/releasenotes/v0.3.0.html
@@ -20,7 +20,7 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Developer’s Guide" href="../devguide/index.html" />
+    <link rel="next" title="Theory and Methodology" href="../methods/index.html" />
     <link rel="prev" title="Release notes for v0.4.0" href="v0.4.0.html" /> 
 </head>
 
@@ -46,7 +46,6 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">Release Notes</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="v0.5.0.html">Release notes for v0.5.0</a></li>
 <li class="toctree-l2"><a class="reference internal" href="v0.4.0.html">Release notes for v0.4.0</a></li>
@@ -59,8 +58,11 @@
 </li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
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@@ -153,7 +155,7 @@ <h2>Contributors<a class="headerlink" href="#contributors" title="Permalink to t
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+        <a href="../methods/index.html" class="btn btn-neutral float-right" title="Theory and Methodology" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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@@ -180,11 +182,6 @@ <h2>Contributors<a class="headerlink" href="#contributors" title="Permalink to t
     <span class="fa fa-caret-down"></span>
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-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="v0.3.0.html">master</a></dd>
diff --git a/master/releasenotes/v0.4.0.html b/master/releasenotes/v0.4.0.html
index 9d31f56c7..a1a9efe88 100644
--- a/master/releasenotes/v0.4.0.html
+++ b/master/releasenotes/v0.4.0.html
@@ -46,7 +46,6 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
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-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">Release Notes</a><ul class="current">
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 <li class="toctree-l2 current"><a class="current reference internal" href="#">Release notes for v0.4.0</a><ul>
@@ -63,8 +62,11 @@
 <li class="toctree-l2"><a class="reference internal" href="v0.3.0.html">Release notes for v0.3.0</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -273,11 +275,6 @@ <h2>Reviewers<a class="headerlink" href="#reviewers" title="Permalink to this he
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/releasenotes/v0.4.0.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="v0.4.0.html">master</a></dd>
diff --git a/master/releasenotes/v0.5.0.html b/master/releasenotes/v0.5.0.html
index cc21a46e8..baa758e1a 100644
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 <li class="toctree-l2 current"><a class="current reference internal" href="#">Release notes for v0.5.0</a><ul>
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 <li class="toctree-l2"><a class="reference internal" href="v0.3.0.html">Release notes for v0.3.0</a></li>
 </ul>
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+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -107,12 +109,15 @@ <h2>Summary<a class="headerlink" href="#summary" title="Permalink to this headin
 <section id="dependency-changes">
 <h2>Dependency Changes<a class="headerlink" href="#dependency-changes" title="Permalink to this heading">¶</a></h2>
 <ul class="simple">
-<li><p><code class="docutils literal notranslate"><span class="pre">SaltProc</span></code> now optionally requires the following package:</p>
+<li><p><code class="docutils literal notranslate"><span class="pre">SaltProc</span></code> now requires the following package:</p>
 <ul>
 <li><p>(new) → <a class="reference external" href="https://github.com/openmc-dev/openmc">openmc</a></p></li>
+<li><p>(new) → <a class="reference external" href="https://github.com/CORE-GATECH-GROUP/serpent-tools">serpentTools</a></p></li>
+<li><p>(formality) → <a class="reference external" href="https://github.com/PyTables/PyTables">pytables</a></p></li>
 </ul>
 </li>
-<li><p><code class="docutils literal notranslate"><span class="pre">pyne&gt;=0.5.11</span></code> → <code class="docutils literal notranslate"><span class="pre">pyne&gt;=0.5.11=nomoab_noopenmc*</span></code></p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pyne&gt;=0.5.11</span></code> →  (removed)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">pydotplus</span></code> →  <code class="docutils literal notranslate"><span class="pre">pydot</span></code></p></li>
 </ul>
 </section>
 <section id="new-features">
@@ -232,11 +237,15 @@ <h2>Python API Changes<a class="headerlink" href="#python-api-changes" title="Pe
 <li><p>(new function) →  <code class="docutils literal notranslate"><span class="pre">get_neutron_settings()</span></code></p></li>
 <li><p>(new function) →  <code class="docutils literal notranslate"><span class="pre">_get_burnable_materials_file()</span></code></p></li>
 <li><p>(new function) →  <code class="docutils literal notranslate"><span class="pre">_get_burnable_material_card_data()</span></code></p></li>
+<li><p>(new function) →  <code class="docutils literal notranslate"><span class="pre">resolve_include_paths()</span></code></p></li>
+<li><p>(new function) →  <code class="docutils literal notranslate"><span class="pre">_convert_name_to_nuccode()</span></code></p></li>
 <li><p>(new parameter) →  <code class="docutils literal notranslate"><span class="pre">zaid_convention</span></code></p></li>
 </ul>
 </li>
 <li><p><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code> is a <code class="docutils literal notranslate"><span class="pre">Depcode</span></code> subclass that interfaces with <code class="docutils literal notranslate"><span class="pre">openmc</span></code>. This class implements the following functions
 - <code class="docutils literal notranslate"><span class="pre">run_depletion_step()</span></code>
+- <code class="docutils literal notranslate"><span class="pre">write_saltproc_openmc_tallies()</span></code>
+- <code class="docutils literal notranslate"><span class="pre">convert_nuclide_code_to_name()</span></code>
 - <code class="docutils literal notranslate"><span class="pre">switch_to_next_geometry()</span></code>
 - <code class="docutils literal notranslate"><span class="pre">write_runtime_input()</span></code>
 - <code class="docutils literal notranslate"><span class="pre">write_depletion_settings()</span></code>
@@ -262,10 +271,16 @@ <h2>Python API Changes<a class="headerlink" href="#python-api-changes" title="Pe
 <li><p>(new) → <code class="docutils literal notranslate"><span class="pre">timestep_type</span></code></p></li>
 </ul>
 </li>
+<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">Results</span></code></p>
+<ul>
+<li><p>New class for reading the <cite>saltproc_results.h5</cite> file</p></li>
+</ul>
+</li>
 <li><p><code class="docutils literal notranslate"><span class="pre">Simulation</span></code></p>
 <ul>
 <li><p><code class="docutils literal notranslate"><span class="pre">core_number</span></code> →  (removed)</p></li>
 <li><p><code class="docutils literal notranslate"><span class="pre">node_number</span></code> →  (removed)</p></li>
+<li><p>(new function) → <code class="docutils literal notranslate"><span class="pre">_add_missing_nuclides()</span></code></p></li>
 </ul>
 </li>
 <li><p><code class="docutils literal notranslate"><span class="pre">Sparger</span></code></p>
@@ -292,6 +307,12 @@ <h2>Contributors<a class="headerlink" href="#contributors" title="Permalink to t
 <section id="reviewers">
 <h2>Reviewers<a class="headerlink" href="#reviewers" title="Permalink to this heading">¶</a></h2>
 <p>The following people reviewed code for this release of SaltProc:</p>
+<ul class="simple">
+<li><p><a class="reference external" href="https://github.com/smpark7">&#64;smpark7</a></p></li>
+<li><p><a class="reference external" href="https://github.com/LukeSeifert">&#64;LukeSeifert</a></p></li>
+<li><p><a class="reference external" href="https://github.com/munkm">&#64;munkm</a></p></li>
+<li><p><a class="reference external" href="https://github.com/abachma2">&#64;abachma2</a></p></li>
+</ul>
 </section>
 </section>
 
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-      <dd><a href="../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
       <dd><a href="v0.5.0.html">master</a></dd>
diff --git a/master/search.html b/master/search.html
index b6ffbba98..a4803d02a 100644
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 <li class="toctree-l1"><a class="reference internal" href="releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/index.html">User’s Guide</a></li>
 <li class="toctree-l1"><a class="reference internal" href="devguide/index.html">Developer’s Guide</a></li>
-<li class="toctree-l1"><a class="reference internal" href="fileformatspec/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference internal" href="api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
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"setup-serpent-monte-carlo-code-environment"]], "Run the tests": [[0, "run-the-tests"]], "Run style tests with flake8": [[0, "run-style-tests-with-flake8"]], "Pull Requests": [[0, "pull-requests"]], "More developer docs": [[0, "more-developer-docs"]], "Meta": [[0, "meta"]], "Developer\u2019s Guide": [[1, "developer-s-guide"]], "Examples": [[2, "examples"]], "HDF5 Output File": [[3, "hdf5-output-file"]], "depcode Properties": [[4, "depcode-properties"]], "Generic properties": [[4, "generic-properties"]], "codename": [[4, "codename"]], "exec_path": [[4, "exec-path"], [4, "serpent-exec-path-property"], [4, "openmc-exec-path-property"]], "template_input_file_path": [[4, "template-input-file-path"], [4, "serpent-template-input-file-path-property"], [4, "openmc-template-input-file-path-property"]], "geo_file_paths": [[4, "geo-file-paths"], [4, "openmc-geo-file-paths-property"]], "Serpent-specific properties": [[4, "serpent-specific-properties"]], "zaid_convention": [[4, "zaid-convention"]], "OpenMC-specific properties": [[4, "openmc-specific-properties"]], "chain_file_path": [[4, "chain-file-path"]], "depletion_settings": [[4, "depletion-settings"]], "operator_kwargs Properties": [[4, "operator-kwargs-properties"]], "diff_burnable_mats": [[4, "diff-burnable-mats"]], "normalization_mode": [[4, "normalization-mode"]], "fission_q": [[4, "fission-q"]], "dilute_initial": [[4, "dilute-initial"]], "fission_yield_mode": [[4, "fission-yield-mode"]], "fission_yield_opts": [[4, "fission-yield-opts"]], "reaction_rate_mode": [[4, "reaction-rate-mode"]], "reaction_rate_opts": [[4, "reaction-rate-opts"]], "reduce_chain": [[4, "reduce-chain"]], "reduce_chain_level": [[4, "reduce-chain-level"]], "fission_yield_opts Properties \u2013 constant fission yield mode": [[4, "fission-yield-opts-properties-constant-fission-yield-mode"]], "energy": [[4, "energy"]], "fission_yield_opts Properties \u2013 cutoff fission yield mode": [[4, "fission-yield-opts-properties-cutoff-fission-yield-mode"]], "cutoff": [[4, "cutoff"]], "thermal_energy": [[4, "thermal-energy"]], "fast_energy": [[4, "fast-energy"]], "reaction_rate_opts Properties \u2013 flux reaction rate mode": [[4, "reaction-rate-opts-properties-flux-reaction-rate-mode"]], "energies": [[4, "energies"]], "reactions": [[4, "reactions"]], "nuclides": [[4, "nuclides"]], "File Format Specifications": [[5, "file-format-specifications"]], "Input Files": [[5, "input-files"]], "Output Files": [[5, "output-files"]], "reactor Properties": [[6, "reactor-properties"]], "volume": [[6, "volume"]], "mass_flowrate": [[6, "mass-flowrate"]], "power_levels": [[6, "power-levels"]], "depletion_timesteps": [[6, "depletion-timesteps"]], "timestep_type": [[6, "timestep-type"]], "timestep_units": [[6, "timestep-units"]], "SaltProc Input File": [[7, "saltproc-input-file"]], "proc_input_file": [[7, "proc-input-file"]], "dot_input_file": [[7, "dot-input-file"]], "output_path": [[7, "output-path"]], "n_depletion_steps": [[7, "n-depletion-steps"]], 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vx.x.x": [[13, "release-notes-for-vx-x-x"]], "Summary": [[13, "summary"], [15, "summary"], [16, "summary"]], "Dependency Changes": [[13, "dependency-changes"], [15, "dependency-changes"], [16, "dependency-changes"]], "New Features": [[13, "new-features"], [14, "new-features"], [15, "new-features"], [16, "new-features"]], "Bug Fixes": [[13, "bug-fixes"], [14, "bug-fixes"], [15, "bug-fixes"], [16, "bug-fixes"]], "Script Changes": [[13, "script-changes"], [15, "script-changes"], [16, "script-changes"]], "Python API Changes": [[13, "python-api-changes"], [15, "python-api-changes"], [16, "python-api-changes"]], "Contributors": [[13, "contributors"], [14, "contributors"], [15, "contributors"], [16, "contributors"]], "Reviewers": [[13, "reviewers"], [15, "reviewers"], [16, "reviewers"]], "Release notes for v0.3.0": [[14, "release-notes-for-v0-3-0"]], "Commit list": [[14, "commit-list"]], "Release notes for v0.4.0": [[15, "release-notes-for-v0-4-0"]], "Release notes for v0.5.0": [[16, 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"check_mass_conservation() (saltproc.process.process method)": [[25, "saltproc.process.Process.check_mass_conservation"]], "process_material() (saltproc.process.process method)": [[25, "saltproc.process.Process.process_material"]], "saltproc.process": [[25, "module-saltproc.process"]], "reactor (class in saltproc.reactor)": [[26, "saltproc.reactor.Reactor"]], "__init__() (saltproc.reactor.reactor method)": [[26, "saltproc.reactor.Reactor.__init__"]], "saltproc.reactor": [[26, "module-saltproc.reactor"]], "separator (class in saltproc.separator)": [[27, "saltproc.separator.Separator"]], "__init__() (saltproc.separator.separator method)": [[27, "saltproc.separator.Separator.__init__"]], "calc_rem_efficiency() (saltproc.separator.separator method)": [[27, "saltproc.separator.Separator.calc_rem_efficiency"]], "calculate_removal_efficiency() (saltproc.separator.separator method)": [[27, "saltproc.separator.Separator.calculate_removal_efficiency"]], "db (saltproc.separator.separator 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\ No newline at end of file
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"userguide/beginners", "userguide/index", "userguide/input", "userguide/parallel", "userguide/processing_system", "userguide/scripts", "userguide/templates", "userguide/troubleshooting"], "filenames": ["api/app.rst", "api/generated/app.rst", "api/generated/app.read_main_input.rst", "api/generated/app.refill_materials.rst", "api/generated/app.reprocess_materials.rst", "api/generated/app.run.rst", "api/generated/saltproc.Depcode.rst", "api/generated/saltproc.Materialflow.rst", "api/generated/saltproc.OpenMCDepcode.rst", "api/generated/saltproc.Process.rst", "api/generated/saltproc.Separator.rst", "api/generated/saltproc.SerpentDepcode.rst", "api/generated/saltproc.Simulation.rst", "api/generated/saltproc.Sparger.rst", "api/index.rst", "devguide/contributing.rst", "devguide/index.rst", "devguide/style.rst", "devguide/tests.rst", "examples.rst", "index.rst", "installation.rst", "io_formats/databasefile.rst", "io_formats/depcode_input.rst", "io_formats/index.rst", "io_formats/reactor_input.rst", "io_formats/saltproc_input.rst", "io_formats/simulation_input.rst", "methods/index.rst", "methods/reprocessing.rst", "overview.rst", "releasenotes/index.rst", "releasenotes/template.rst", "releasenotes/v0.3.0.rst", "releasenotes/v0.4.0.rst", "releasenotes/v0.5.0.rst", "userguide/basics.rst", "userguide/beginners.rst", "userguide/index.rst", "userguide/input.rst", "userguide/parallel.rst", "userguide/processing_system.rst", "userguide/scripts.rst", "userguide/templates.rst", "userguide/troubleshooting.rst"], "titles": ["<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">saltproc.app</span></code>", "app", "app.read_main_input", "app.refill_materials", "app.reprocess_materials", "app.run", "saltproc.Depcode", "saltproc.Materialflow", "saltproc.OpenMCDepcode", "saltproc.Process", "saltproc.Separator", "saltproc.SerpentDepcode", "saltproc.Simulation", "saltproc.Sparger", "SaltProc API", "Contributing", "Developer\u2019s Guide", 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-  <section id="saltproc">
-<h1>saltproc<a class="headerlink" href="#saltproc" title="Permalink to this heading">¶</a></h1>
-<div class="toctree-wrapper compound">
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-  <section id="module-saltproc.abc">
-<span id="saltproc-abc-module"></span><h1>saltproc.abc module<a class="headerlink" href="#module-saltproc.abc" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.abc.</span></span><span class="sig-name descname"><span class="pre">Depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">ABC</span></code></p>
-<p>Abstract interface for running depletion steps.</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.neutronics_parameters">
-<span class="sig-name descname"><span class="pre">neutronics_parameters</span></span><a class="headerlink" href="#saltproc.abc.Depcode.neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds depletion step neutronics parameters. Parameter names are keys
-and parameter values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.step_metadata">
-<span class="sig-name descname"><span class="pre">step_metadata</span></span><a class="headerlink" href="#saltproc.abc.Depcode.step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds depletion code depletion step metadata. Metadata labels are keys
-and metadata values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.runtime_inputfile">
-<span class="sig-name descname"><span class="pre">runtime_inputfile</span></span><a class="headerlink" href="#saltproc.abc.Depcode.runtime_inputfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Path to input file used to run depletion step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.runtime_matfile">
-<span class="sig-name descname"><span class="pre">runtime_matfile</span></span><a class="headerlink" href="#saltproc.abc.Depcode.runtime_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Path to material file containing burnable materials used to
-run depletion step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.npop">
-<span class="sig-name descname"><span class="pre">npop</span></span><a class="headerlink" href="#saltproc.abc.Depcode.npop" title="Permalink to this definition">¶</a></dt>
-<dd><p>Size of neutron population per cycle</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.active_cycles">
-<span class="sig-name descname"><span class="pre">active_cycles</span></span><a class="headerlink" href="#saltproc.abc.Depcode.active_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of active cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.inactive_cycles">
-<span class="sig-name descname"><span class="pre">inactive_cycles</span></span><a class="headerlink" href="#saltproc.abc.Depcode.inactive_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of inactive cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initialize a Depcode object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
-<li><p><strong>codename</strong> (<em>str</em>) – Name of depletion code.</p></li>
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to depletion code executable.</p></li>
-<li><p><strong>template_input_file_path</strong> (<em>str</em><em> or </em><em>dict</em><em> of </em><em>str to str</em>) – Path(s) to depletion code input file(s), or a dictionary where
-the input type (e.g. material, geometry, settings, etc.) as a
-string are keys, and the path to the input file are values.
-Type depends on depletion code in use.</p></li>
-<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.read_depleted_materials">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads depleted materials from the depletion step results
-and returns a dictionary containing them.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding material composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.read_neutronics_parameters">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads depletion code’s depletion step neutronics parameters and
-stores them in <a class="reference internal" href="#saltproc.abc.Depcode" title="saltproc.abc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a> object’s
-<a class="reference internal" href="#saltproc.abc.Depcode.neutronics_parameters" title="saltproc.abc.Depcode.neutronics_parameters"><code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code></a> attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.read_step_metadata">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads depletion code’s depletion step metadata and stores it in the
-<a class="reference internal" href="#saltproc.abc.Depcode" title="saltproc.abc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a> object’s <a class="reference internal" href="#saltproc.abc.Depcode.step_metadata" title="saltproc.abc.Depcode.step_metadata"><code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code></a> attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.run_depletion_step">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threads</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs a depletion step as a subprocess with the given parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mpi_args</strong> (<em>list</em><em> of </em><em>str</em>) – Arguments for running simulations on supercomputers using
-<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p></li>
-<li><p><strong>threads</strong> (<em>int</em>) – Threads to use for shared-memory parallelism</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.switch_to_next_geometry">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Changes the geometry used in the depletion code simulation to the
-next geometry file in <code class="docutils literal notranslate"><span class="pre">geo_file_paths</span></code></p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.update_depletable_materials">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Update material file with reprocessed material compositions.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.abc.Depcode.write_runtime_input">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/abc.html#Depcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.abc.Depcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Write input file(s) for running depletion step</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
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-
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-  <section id="module-saltproc.app">
-<span id="saltproc-app-module"></span><h1>saltproc.app module<a class="headerlink" href="#module-saltproc.app" title="Permalink to this heading">¶</a></h1>
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._create_depcode_object">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_create_depcode_object</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">depcode_input</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_create_depcode_object"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._create_depcode_object" title="Permalink to this definition">¶</a></dt>
-<dd><p>Helper function for <cite>run()</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._create_reactor_object">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_create_reactor_object</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor_input</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_create_reactor_object"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._create_reactor_object" title="Permalink to this definition">¶</a></dt>
-<dd><p>Helper function for <cite>run()</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._create_simulation_object">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_create_simulation_object</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simulation_input</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depcode</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_create_simulation_object"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._create_simulation_object" title="Permalink to this definition">¶</a></dt>
-<dd><p>Helper function for <cite>run()</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._print_simulation_input_info">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_print_simulation_input_info</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simulation_input</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depcode_input</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_print_simulation_input_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._print_simulation_input_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Helper function for <cite>run()</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._process_main_input_reactor_params">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_process_main_input_reactor_params</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor_input</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_depletion_steps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">codename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_process_main_input_reactor_params"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._process_main_input_reactor_params" title="Permalink to this definition">¶</a></dt>
-<dd><p>Process SaltProc reactor class input parameters based on the value and
-data type of the <cite>n_depletion_steps</cite> parameter as well as the depletion code
-being used, and throw errors if the input parameters are incorrect.</p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._scale_depletion_timesteps">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_scale_depletion_timesteps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">timestep_units</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_timesteps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">codename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_scale_depletion_timesteps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._scale_depletion_timesteps" title="Permalink to this definition">¶</a></dt>
-<dd><p>Scale <cite>depletion_timesteps</cite> to the correct value based on <cite>timestep_units</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app._validate_depletion_timesteps_power_levels">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">_validate_depletion_timesteps_power_levels</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">n_depletion_steps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_timesteps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#_validate_depletion_timesteps_power_levels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app._validate_depletion_timesteps_power_levels" title="Permalink to this definition">¶</a></dt>
-<dd><p>Ensure that the number of depletion timesteps and power levels match
-<cite>n_depletion_steps</cite> if it is given. Otherwise, compare the lengths of
-<cite>depletion_timesteps</cite> and <cite>power_levels</cite></p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.get_extraction_process_paths">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">get_extraction_process_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dot_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#get_extraction_process_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.get_extraction_process_paths" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads directed graph that describes fuel reprocessing system structure
-from a <cite>*.dot</cite> file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>dot_file</strong> (<em>str</em>) – Path to the <cite>.dot</cite> describing the fuel reprocessing paths.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>mat_name</strong> (<em>str</em>) – Name of burnable material which the reprocessing scheme applies to.</p></li>
-<li><p><strong>extraction_process_paths</strong> (<em>list</em>) – List of lists containing all possible paths between <cite>core_outlet</cite> and
-<cite>core_inlet</cite>.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.get_extraction_processes">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">get_extraction_processes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#get_extraction_processes"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.get_extraction_processes" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">extraction_processes</span></code> objects from the <cite>.json</cite> file describing
-processing system objects.</p>
-<p><code class="docutils literal notranslate"><span class="pre">extraction_processes</span></code> objects describe components that would perform
-fuel processing in a real reactor, such as a gas sparger or a nickel
-filter.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>extraction_processes</strong> – Dictionary mapping material names to extraction processes.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping process names to
-<a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.process.Process</span></code></a> objects.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to dict</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.get_feeds">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">get_feeds</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#get_feeds"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.get_feeds" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">feed</span></code> objects from <cite>.json</cite> file describing processing system
-objects.</p>
-<p><code class="docutils literal notranslate"><span class="pre">feed</span></code> objects describe material flows that replace nuclides needed to
-keep the reactor operating that were removed during reprocessing.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>feeds</strong> – Dictionary that maps material names to material flows</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping material flow names to
-<a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a> objects representing
-material feeds.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to dict</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.parse_arguments">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">parse_arguments</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#parse_arguments"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.parse_arguments" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses arguments from command line.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><ul class="simple">
-<li><p><strong>s</strong> (<em>int</em>) – Number of threads to use for shared-memory parallelism.</p></li>
-<li><p><strong>i</strong> (<em>str</em>) – Path and name of main SaltProc input file (json format).</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_main_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_main_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">main_inp_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_main_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_main_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads main SaltProc input file (json format).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>main_inp_file</strong> (<em>str</em>) – Path to SaltProc main input file and name of this file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>input_path</strong> (<em>Path</em>) – Path to main input file</p></li>
-<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
-<li><p><strong>dot_file</strong> (<em>str</em>) – Path to the <cite>.dot</cite> describing the fuel reprocessing paths.</p></li>
-<li><p><strong>mpi_args</strong> (<em>list of str</em>) – Arguments for running simulations on supercomputers using mpiexec or
-similar programs.</p></li>
-<li><p><strong>object_inputs</strong> (<em>3-tuple of dict</em>) – tuple containing the inputs for constructing the
-<code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">Simulation</span></code>, and
-<code class="xref py py-class docutils literal notranslate"><span class="pre">Reactor</span></code> objects.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.refill_materials">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">refill_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extracted_mass</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_streams</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#refill_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.refill_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Makes up material loss in removal processes by adding fresh fuel.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – Dicitionary mapping material names to
-<a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a> objects that have already
-been reprocessed by <cite>reprocess_materials</cite>.</p></li>
-<li><p><strong>extracted_mass</strong> (<em>dict</em><em> of </em><em>str to float</em>) – Dictionary mapping material names to the mass in [g] of that material
-removed via reprocessing.</p></li>
-<li><p><strong>waste_streams</strong> (<em>dict</em><em> of </em><em>str to dict</em>) – <p>Dictionary mapping material names to waste streams from reprocessing</p>
-<blockquote>
-<div><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Material name.</p>
-</dd>
-</dl>
-</div></blockquote>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping waste stream names to
-<a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a> objects representing
-waste streams.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>waste_streams</strong> – Superset of the input parameter <cite>waste_streams</cite>. Dictionary has
-keys for feed streams that map to <a href="#id1"><span class="problematic" id="id2">:classs:`Materialflow`</span></a> objects
-representing those material feed streams.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to dict</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.reprocess_materials">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">reprocess_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">process_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dot_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#reprocess_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.reprocess_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Applies extraction reprocessing scheme to burnable materials.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – Dictionary that contains <a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a>
-objects with burnable material data right after irradiation in the
-core.</p></li>
-<li><p><strong>process_file</strong> (<em>str</em>) – Path to the <cite>.json</cite> file describing the fuel reprocessing components.</p></li>
-<li><p><strong>dot_file</strong> (<em>str</em>) – Path to the <cite>.dot</cite> describing the fuel reprocessing paths.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul>
-<li><p><strong>waste_streams</strong> (<em>dict of str to dict</em>) – Dictionary mapping material names to waste streams.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Material name.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Dictionary mapping waste stream names to
-<a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow" title="saltproc.materialflow.Materialflow"><code class="xref py py-class docutils literal notranslate"><span class="pre">saltproc.materialflow.Materialflow</span></code></a>
-objects representing waste streams.</p>
-</dd>
-</dl>
-</li>
-<li><p><strong>extracted_mass</strong> (<em>dict of str to float</em>) – Dictionary mapping material names to the mass in [g] of that material
-removed via reprocessing.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.run">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.run" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inititializes main run</p>
-</dd></dl>
-
-</section>
-
-
-           </div>
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-             
-  <section id="saltproc-package">
-<h1>saltproc package<a class="headerlink" href="#saltproc-package" title="Permalink to this heading">¶</a></h1>
-<section id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.abc.html">saltproc.abc module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode"><code class="docutils literal notranslate"><span class="pre">Depcode</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">Depcode.neutronics_parameters</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.step_metadata"><code class="docutils literal notranslate"><span class="pre">Depcode.step_metadata</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.runtime_inputfile"><code class="docutils literal notranslate"><span class="pre">Depcode.runtime_inputfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.runtime_matfile"><code class="docutils literal notranslate"><span class="pre">Depcode.runtime_matfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.npop"><code class="docutils literal notranslate"><span class="pre">Depcode.npop</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.active_cycles"><code class="docutils literal notranslate"><span class="pre">Depcode.active_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.inactive_cycles"><code class="docutils literal notranslate"><span class="pre">Depcode.inactive_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.__init__"><code class="docutils literal notranslate"><span class="pre">Depcode.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.read_depleted_materials"><code class="docutils literal notranslate"><span class="pre">Depcode.read_depleted_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.read_neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">Depcode.read_neutronics_parameters()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.read_step_metadata"><code class="docutils literal notranslate"><span class="pre">Depcode.read_step_metadata()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.run_depletion_step"><code class="docutils literal notranslate"><span class="pre">Depcode.run_depletion_step()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">Depcode.switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.update_depletable_materials"><code class="docutils literal notranslate"><span class="pre">Depcode.update_depletable_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode.write_runtime_input"><code class="docutils literal notranslate"><span class="pre">Depcode.write_runtime_input()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.app.html">saltproc.app module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._create_depcode_object"><code class="docutils literal notranslate"><span class="pre">_create_depcode_object()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._create_reactor_object"><code class="docutils literal notranslate"><span class="pre">_create_reactor_object()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._create_simulation_object"><code class="docutils literal notranslate"><span class="pre">_create_simulation_object()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._print_simulation_input_info"><code class="docutils literal notranslate"><span class="pre">_print_simulation_input_info()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._process_main_input_reactor_params"><code class="docutils literal notranslate"><span class="pre">_process_main_input_reactor_params()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._scale_depletion_timesteps"><code class="docutils literal notranslate"><span class="pre">_scale_depletion_timesteps()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app._validate_depletion_timesteps_power_levels"><code class="docutils literal notranslate"><span class="pre">_validate_depletion_timesteps_power_levels()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.get_extraction_process_paths"><code class="docutils literal notranslate"><span class="pre">get_extraction_process_paths()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.get_extraction_processes"><code class="docutils literal notranslate"><span class="pre">get_extraction_processes()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.get_feeds"><code class="docutils literal notranslate"><span class="pre">get_feeds()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.parse_arguments"><code class="docutils literal notranslate"><span class="pre">parse_arguments()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_main_input"><code class="docutils literal notranslate"><span class="pre">read_main_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.refill_materials"><code class="docutils literal notranslate"><span class="pre">refill_materials()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.reprocess_materials"><code class="docutils literal notranslate"><span class="pre">reprocess_materials()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.materialflow.html">saltproc.materialflow module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow"><code class="docutils literal notranslate"><span class="pre">Materialflow</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__add__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__deepcopy__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__eq__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__rmul__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">Materialflow.copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass"><code class="docutils literal notranslate"><span class="pre">Materialflow.get_mass()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr"><code class="docutils literal notranslate"><span class="pre">Materialflow.print_attr()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow"><code class="docutils literal notranslate"><span class="pre">Materialflow.scale_matflow()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.openmc_depcode.html">saltproc.openmc_depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.neutronics_parameters</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.step_metadata"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.step_metadata</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.runtime_inputfile"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.runtime_inputfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.runtime_matfile"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.runtime_matfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.npop"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.npop</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.active_cycles"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.active_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.inactive_cycles"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.inactive_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.__init__"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_depleted_materials"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.read_depleted_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.read_neutronics_parameters()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.read_step_metadata"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.read_step_metadata()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.run_depletion_step"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.run_depletion_step()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.update_depletable_materials"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.update_depletable_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_depletion_settings"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.write_depletion_settings()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_runtime_input"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.write_runtime_input()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.openmc_depcode.html#saltproc.openmc_depcode.OpenMCDepcode.write_saltproc_openmc_tallies"><code class="docutils literal notranslate"><span class="pre">OpenMCDepcode.write_saltproc_openmc_tallies()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.openmc_deplete.html">saltproc.openmc_deplete module</a></li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.process.html">saltproc.process module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process"><code class="docutils literal notranslate"><span class="pre">Process</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.__init__"><code class="docutils literal notranslate"><span class="pre">Process.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.calculate_removal_efficiency"><code class="docutils literal notranslate"><span class="pre">Process.calculate_removal_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.check_mass_conservation"><code class="docutils literal notranslate"><span class="pre">Process.check_mass_conservation()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.process_material"><code class="docutils literal notranslate"><span class="pre">Process.process_material()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.reactor.html">saltproc.reactor module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor"><code class="docutils literal notranslate"><span class="pre">Reactor</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor.__init__"><code class="docutils literal notranslate"><span class="pre">Reactor.__init__()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.separator.html">saltproc.separator module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator"><code class="docutils literal notranslate"><span class="pre">Separator</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_salt"><code class="docutils literal notranslate"><span class="pre">Separator.q_salt</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_he"><code class="docutils literal notranslate"><span class="pre">Separator.q_he</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.do"><code class="docutils literal notranslate"><span class="pre">Separator.do</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.dp"><code class="docutils literal notranslate"><span class="pre">Separator.dp</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.db"><code class="docutils literal notranslate"><span class="pre">Separator.db</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.deltap"><code class="docutils literal notranslate"><span class="pre">Separator.deltap</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.temp_room"><code class="docutils literal notranslate"><span class="pre">Separator.temp_room</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.k"><code class="docutils literal notranslate"><span class="pre">Separator.k</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.eff"><code class="docutils literal notranslate"><span class="pre">Separator.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.description"><code class="docutils literal notranslate"><span class="pre">Separator.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Separator.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.__init__"><code class="docutils literal notranslate"><span class="pre">Separator.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.calculate_removal_efficiency"><code class="docutils literal notranslate"><span class="pre">Separator.calculate_removal_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id0"><code class="docutils literal notranslate"><span class="pre">Separator.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id1"><code class="docutils literal notranslate"><span class="pre">Separator.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id2"><code class="docutils literal notranslate"><span class="pre">Separator.k</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.serpent_depcode.html">saltproc.serpent_depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.neutronics_parameters</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.step_metadata"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.step_metadata</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.runtime_inputfile"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.runtime_inputfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.runtime_matfile"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.runtime_matfile</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.npop"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.npop</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.active_cycles"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.active_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.inactive_cycles"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.inactive_cycles</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.__init__"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.convert_nuclide_code_to_name()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.convert_nuclide_code_to_zam()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.create_runtime_matfile()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.get_neutron_settings()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.map_nuclide_code_zam_to_serpent()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_depleted_materials"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.read_depleted_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_neutronics_parameters"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.read_neutronics_parameters()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_plaintext_file"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.read_plaintext_file()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.read_step_metadata"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.read_step_metadata()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.run_depletion_step"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.run_depletion_step()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.set_power_load"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.set_power_load()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.update_depletable_materials"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.update_depletable_materials()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.serpent_depcode.html#saltproc.serpent_depcode.SerpentDepcode.write_runtime_input"><code class="docutils literal notranslate"><span class="pre">SerpentDepcode.write_runtime_input()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.simulation.html">saltproc.simulation module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation"><code class="docutils literal notranslate"><span class="pre">Simulation</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.__init__"><code class="docutils literal notranslate"><span class="pre">Simulation.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.check_restart"><code class="docutils literal notranslate"><span class="pre">Simulation.check_restart()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger"><code class="docutils literal notranslate"><span class="pre">Simulation.check_switch_geo_trigger()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta"><code class="docutils literal notranslate"><span class="pre">Simulation.read_k_eds_delta()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr"><code class="docutils literal notranslate"><span class="pre">Simulation.store_after_repr()</span></code></a></li>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id2"><code class="docutils literal notranslate"><span class="pre">Sparger.eff()</span></code></a></li>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id8"><code class="docutils literal notranslate"><span class="pre">Sparger.temp_room</span></code></a></li>
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-  <section id="module-saltproc.materialflow">
-<span id="saltproc-materialflow-module"></span><h1>saltproc.materialflow module<a class="headerlink" href="#module-saltproc.materialflow" title="Permalink to this heading">¶</a></h1>
-<p>Materialflow module</p>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.materialflow.</span></span><span class="sig-name descname"><span class="pre">Materialflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Material</span></code></p>
-<p>Class contains information about burnable material flow. Based on
-<code class="xref py py-class docutils literal notranslate"><span class="pre">pyne.Material</span></code>.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__add__">
-<span class="sig-name descname"><span class="pre">__add__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__add__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__add__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python adding operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>x</strong> (<em>obj</em>) – Materialflow object #1.</p></li>
-<li><p><strong>y</strong> (<em>obj</em>) – Materialflow object #2.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow which is a sum of isotope masses from <cite>x</cite> and <cite>y</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__deepcopy__">
-<span class="sig-name descname"><span class="pre">__deepcopy__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">memo</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__deepcopy__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__deepcopy__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Return a deep copy of compound object <cite>self</cite>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>self</strong> (<em>obj</em>) – Compound object.</p></li>
-<li><p><strong>memo</strong> (<em>dict</em><em>, </em><em>optional</em>) – Id-to-object correspondence to control for recursion.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>New compound object copied from <cite>self</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__eq__">
-<span class="sig-name descname"><span class="pre">__eq__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">other</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__eq__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__eq__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python <code class="docutils literal notranslate"><span class="pre">=</span></code> operation to compare two Materialflow
-objects. Compares objects total mass, density, atoms_per_molecule,
-temperature, mass flowrate, and masses of important isotopes:
-uranium-235 and uranium-238.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>other</strong> (<em>obj</em>) – Materialflow object to compare with.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Are the objects equal?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Materialflow object.</p>
-<dl class="simple">
-<dt>:param <code class="xref py py-class docutils literal notranslate"><span class="pre">pyne.Material</span></code>: PyNE Material parent class containing nuclide vector, density,</dt><dd><p>mass, atoms_per_molecule, metadata</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>temp</strong> (<em>float</em>) – temperature of the material flow (K)</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>void_frac</strong> (<em>float</em>) – void fraction in the material (%)</p></li>
-<li><p><strong>burnup</strong> (<em>float</em>) – material burnup at the end of depletion step [MWd/kgU]</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__rmul__">
-<span class="sig-name descname"><span class="pre">__rmul__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scaling_factor</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__rmul__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__rmul__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python multiplication operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>scaling_factor</strong> (<em>float</em><em> or </em><em>int</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow object which has mass of each isotope and
-mass_flowrate scaled by <cite>other</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.copy_pymat_attrs">
-<span class="sig-name descname"><span class="pre">copy_pymat_attrs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.copy_pymat_attrs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.copy_pymat_attrs" title="Permalink to this definition">¶</a></dt>
-<dd><p>Copies PyNE attributites from source object (<cite>src</cite>) to target
-object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>src</strong> (<em>obj</em>) – Materialflow object to copy attributes from.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.get_mass">
-<span class="sig-name descname"><span class="pre">get_mass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.get_mass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.get_mass" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns total mass of the material descibed in Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p>The mass of the object.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.print_attr">
-<span class="sig-name descname"><span class="pre">print_attr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.print_attr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.print_attr" title="Permalink to this definition">¶</a></dt>
-<dd><p>Prints various attributes of Materialflow object.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.scale_matflow">
-<span class="sig-name descname"><span class="pre">scale_matflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">f</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.scale_matflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.scale_matflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns nuclide vector dictionary, obtained from object attrs and
-then scaled by factor.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>f</strong> (<em>float</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>new_mat_comp</strong> – Materialflow nuclide component dictionary of relative mass.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The keys are preserved from PyNE Material (integers
-representing nuclides in id-form).</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Each nuclide’s mass fraction, multiplied by
-factor f.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of int to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
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-  <section id="module-saltproc.openmc_depcode">
-<span id="saltproc-openmc-depcode-module"></span><h1>saltproc.openmc_depcode module<a class="headerlink" href="#module-saltproc.openmc_depcode" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.openmc_depcode.</span></span><span class="sig-name descname"><span class="pre">OpenMCDepcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_settings</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chain_file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode" title="saltproc.abc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a></p>
-<p>Interface for running depletion steps in OpenMC, as well as obtaining
-depletion step results.</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters">
-<span class="sig-name descname"><span class="pre">neutronics_parameters</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds OpenMC depletion step neutronics parameters. Parameter names are
-keys and parameter values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.step_metadata">
-<span class="sig-name descname"><span class="pre">step_metadata</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds OpenMC depletion step metadata. Metadata labels are keys
-and metadata values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.runtime_inputfile">
-<span class="sig-name descname"><span class="pre">runtime_inputfile</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.runtime_inputfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Paths to OpenMC input files used to run depletion step. Contains neutron
-settings and geometry.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.runtime_matfile">
-<span class="sig-name descname"><span class="pre">runtime_matfile</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.runtime_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Path to OpenMC material file containing materials used to
-run depletion step, and modified after fuel reprocessing.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.npop">
-<span class="sig-name descname"><span class="pre">npop</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.npop" title="Permalink to this definition">¶</a></dt>
-<dd><p>Size of neutron population per cycle</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.active_cycles">
-<span class="sig-name descname"><span class="pre">active_cycles</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.active_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of active cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.inactive_cycles">
-<span class="sig-name descname"><span class="pre">inactive_cycles</span></span><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.inactive_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of inactive cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_settings</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chain_file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initialize a OpenMCDepcode object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to OpenMC depletion script.</p></li>
-<li><p><strong>template_input_file_path</strong> (<em>dict</em><em> of </em><em>str to str</em>) – Path to user input files (<code class="docutils literal notranslate"><span class="pre">.xml</span></code> file for geometry,
-material, and settings) for OpenMC. File type as strings
-are keys (e.g. ‘geometry’, ‘settings’, ‘material’), and
-file path as strings are values.</p></li>
-<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – <dl class="simple">
-<dt>Path to file that contains the reactor geometry.</dt><dd><p>List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p>
-</dd>
-<dt>depletion_settings<span class="classifier">dict</span></dt><dd><p>Keyword arguments to pass to <code class="xref py py-func docutils literal notranslate"><span class="pre">openmc.model.deplete()</span></code>.</p>
-</dd>
-<dt>chain_file_path<span class="classifier">str</span></dt><dd><p>Path to depletion chain file</p>
-</dd>
-</dl>
-</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.read_depleted_materials">
-<span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads depleted materials from OpenMC’s <cite>depletion_results.h5</cite> file
-and returns a dictionary with a <code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object for each
-depleted material.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.read_neutronics_parameters">
-<span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads OpenMC depletion step neutronics parameters and stores them
-in <a class="reference internal" href="#saltproc.openmc_depcode.OpenMCDepcode" title="saltproc.openmc_depcode.OpenMCDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a> object’s <a class="reference internal" href="#saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters" title="saltproc.openmc_depcode.OpenMCDepcode.neutronics_parameters"><code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code></a>
-attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.read_step_metadata">
-<span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads OpenMC’s depletion step metadata and stores it in the
-<a class="reference internal" href="#saltproc.openmc_depcode.OpenMCDepcode" title="saltproc.openmc_depcode.OpenMCDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">OpenMCDepcode</span></code></a> object’s <a class="reference internal" href="#saltproc.openmc_depcode.OpenMCDepcode.step_metadata" title="saltproc.openmc_depcode.OpenMCDepcode.step_metadata"><code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code></a> attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.run_depletion_step">
-<span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threads</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs a depletion step in OpenMC as a subprocess</p>
-<dl class="simple">
-<dt>mpi_args<span class="classifier">list of str</span></dt><dd><p>Arguments for running simulations on supercomputers using
-<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p>
-</dd>
-<dt>threads<span class="classifier">int</span></dt><dd><p>Threads to use for shared-memory parallelism</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.switch_to_next_geometry">
-<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Switches the geometry file for the OpenMC depletion simulation to
-the next geometry file in <cite>geo_file_paths</cite>.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.update_depletable_materials">
-<span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Updates material file with reprocessed material compositions.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.write_depletion_settings">
-<span class="sig-name descname"><span class="pre">write_depletion_settings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_depletion_settings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.write_depletion_settings" title="Permalink to this definition">¶</a></dt>
-<dd><p>Write the depeletion settings for the <code class="docutils literal notranslate"><span class="pre">openmc.deplete</span></code>
-module.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>step_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.write_runtime_input">
-<span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Write OpenMC runtime input files for running depletion step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>depletion_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.openmc_depcode.OpenMCDepcode.write_saltproc_openmc_tallies">
-<span class="sig-name descname"><span class="pre">write_saltproc_openmc_tallies</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">materials</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geometry</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/openmc_depcode.html#OpenMCDepcode.write_saltproc_openmc_tallies"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.openmc_depcode.OpenMCDepcode.write_saltproc_openmc_tallies" title="Permalink to this definition">¶</a></dt>
-<dd><p>Write tallies for calculating burnup and delayed neutron
-parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>materials</strong> (<cite>openmc.Materials</cite> object) – The materials for the depletion simulation</p></li>
-<li><p><strong>geometry</strong> (<cite>openmc.Geometry</cite> object) – The geometry for the depletion simulation</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.process">
-<span id="saltproc-process-module"></span><h1>saltproc.process module<a class="headerlink" href="#module-saltproc.process" title="Permalink to this heading">¶</a></h1>
-<p>Process module</p>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.process.Process">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.process.</span></span><span class="sig-name descname"><span class="pre">Process</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Represents an aribtrary processing component that extracts nuclides from
-a material.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Process object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>capacity</strong> (<em>float</em>) – maximum mass flow rate of the material flow which current process
-can handle (g/s)</p></li>
-<li><p><strong>volume</strong> (<em>float</em>) – total volume of the current facility (<span class="math notranslate nohighlight">\(cm^3\)</span>)</p></li>
-<li><p><strong>efficiency</strong> (<em>dict</em><em> of </em><em>str to float</em><em> or </em><em>str</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>element name for removal (not isotope)</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficency for the isotope as a weight fraction (float)
-or a function eps(x,m,t,P,L) (str)</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>optional_parameter</strong> (<em>float</em>) – user can define any custom parameter in the input file describing
-processes and use it in efficiency function</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.calculate_removal_efficiency">
-<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Calculate the value of the removal efficiency for a given nuclide
-in this process.</p>
-<p>If the efficiency is a str describing efficiency as a
-function (eps(x,m,t,P,L)), then construct the function and evaluate it.
-Otherwise, it is a float and can be returned.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.check_mass_conservation">
-<span class="sig-name descname"><span class="pre">check_mass_conservation</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.check_mass_conservation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.check_mass_conservation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Checking that Process.outflow + Process.waste_stream is equal
-Process.inflow and the total mass is being conserved. Returns <cite>True</cite> if
-the mass conserved or <cite>False</cite> if its mismatched.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.process_material">
-<span class="sig-name descname"><span class="pre">process_material</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">inflow</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.process_material"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.process_material" title="Permalink to this definition">¶</a></dt>
-<dd><p>Updates <code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object <cite>inflow</cite> by removing target
-nuclides with specific efficiencies in single component of fuel
-reprocessing system and returns waste stream Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>inflow</strong> (<em>Materialflow obj</em>) – Material flowing into the processing system component.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>waste_stream</strong> (<em>Materialflow object</em>) – Waste stream from the reprocessing system component.</p></li>
-<li><p><strong>thru_flow</strong> (<em>Materialflow object</em>) – Remaining material flow that will pass through the
-reprocessing system component.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
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-  <section id="module-saltproc.reactor">
-<span id="saltproc-reactor-module"></span><h1>saltproc.reactor module<a class="headerlink" href="#module-saltproc.reactor" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.reactor.</span></span><span class="sig-name descname"><span class="pre">Reactor</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_timesteps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timestep_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'stepwise'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timestep_units</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'d'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class contains information about current state of the reactor.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depletion_timesteps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timestep_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'stepwise'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timestep_units</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'d'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the class.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>volume</strong> (<em>float</em>) – Total volume of the reactor core (<span class="math notranslate nohighlight">\(cm^3\)</span>).</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – Total mass flowrate through reactor core (g/s).</p></li>
-<li><p><strong>power_levels</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Normalized power level for each depletion step (W).</p></li>
-<li><p><strong>depletion_timesteps</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Array of timesteps.</p></li>
-<li><p><strong>timestep_type</strong> (<em>str</em>) – ‘cumulative’, ‘stepwise’.</p></li>
-<li><p><strong>timestep_units</strong> (<em>str</em>) – Timestep units</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.separator">
-<span id="saltproc-separator-module"></span><h1>saltproc.separator module<a class="headerlink" href="#module-saltproc.separator" title="Permalink to this heading">¶</a></h1>
-<p>Separator module</p>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.separator.Separator">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.separator.</span></span><span class="sig-name descname"><span class="pre">Separator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Represents a bubble separator.</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.do">
-<span class="sig-name descname"><span class="pre">do</span></span><a class="headerlink" href="#saltproc.separator.Separator.do" title="Permalink to this definition">¶</a></dt>
-<dd><p>gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.separator.Separator.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.separator.Separator.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.deltap">
-<span class="sig-name descname"><span class="pre">deltap</span></span><a class="headerlink" href="#saltproc.separator.Separator.deltap" title="Permalink to this definition">¶</a></dt>
-<dd><p>Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.separator.Separator.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.k">
-<span class="sig-name descname"><span class="pre">k</span></span><a class="headerlink" href="#saltproc.separator.Separator.k" title="Permalink to this definition">¶</a></dt>
-<dd><p>Slope of the initial swirling (use 1 for this).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency from Jiaqi’s correlation. [1]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#saltproc.separator.Separator.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Separator object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>do</strong> (<em>float</em>) – gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>deltap</strong> (<em>float</em>) – Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p></li>
-<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>jl</strong> (<em>float</em>) – liquid superficial velocity (m/s)</p></li>
-<li><p><strong>alpha</strong> (<em>float</em>) – void fraction</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.calculate_removal_efficiency">
-<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Calculate the value of the removal efficiency for a given nuclide
-in this process.</p>
-<p>Overrides the existing method in :class`openmc.process.Process` to
-provide efficiency values of target isotopes calculated in the
-<code class="docutils literal notranslate"><span class="pre">eff()</span></code> function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in
-sensitivity analysis</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>pltdict</strong> – contains instances’ information</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas/bubble separation efficiency from Jiaqi’s correlation</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary that contains removal efficiency of each target
-element.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">k</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">1.0</span></em><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: master
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
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-      <dt>Tags</dt>
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-  <section id="module-saltproc.serpent_depcode">
-<span id="saltproc-serpent-depcode-module"></span><h1>saltproc.serpent_depcode module<a class="headerlink" href="#module-saltproc.serpent_depcode" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.serpent_depcode.</span></span><span class="sig-name descname"><span class="pre">SerpentDepcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">zaid_convention</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.abc.html#saltproc.abc.Depcode" title="saltproc.abc.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a></p>
-<p>Interface for running depletion steps in Serpent, as well as obtaining
-depletion step results.</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters">
-<span class="sig-name descname"><span class="pre">neutronics_parameters</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds Serpent2 depletion step neutronics parameters. Parameter names are
-keys and parameter values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.step_metadata">
-<span class="sig-name descname"><span class="pre">step_metadata</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Holds Serpent2 depletion step metadata. Metadata labels are keys
-and metadata values are values.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to type</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.runtime_inputfile">
-<span class="sig-name descname"><span class="pre">runtime_inputfile</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.runtime_inputfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Path to Serpent2 input file used to run depletion step. Contains neutron
-settings and non-burnable materials.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.runtime_matfile">
-<span class="sig-name descname"><span class="pre">runtime_matfile</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.runtime_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Path to Serpent2 material file containing burnable materials used to
-run depletion step, and modified after fuel reprocessing.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.npop">
-<span class="sig-name descname"><span class="pre">npop</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.npop" title="Permalink to this definition">¶</a></dt>
-<dd><p>Size of neutron population per cycle</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.active_cycles">
-<span class="sig-name descname"><span class="pre">active_cycles</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.active_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of active cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.inactive_cycles">
-<span class="sig-name descname"><span class="pre">inactive_cycles</span></span><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.inactive_cycles" title="Permalink to this definition">¶</a></dt>
-<dd><p>Number of inactive cycles.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">output_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_input_file_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file_paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">zaid_convention</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initialize a SerpentDepcode object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>output_path</strong> (<em>str</em>) – Path to results storage directory.</p></li>
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to Serpent2 executable.</p></li>
-<li><p><strong>template_input_file_path</strong> (<em>str</em>) – Path to user input file for Serpent2</p></li>
-<li><p><strong>geo_file_paths</strong> (<em>str</em><em> or </em><em>list</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-<li><p><strong>zaid_convention</strong> (<em>str</em>) – <p>ZAID naming convention for nuclide codes.</p>
-<p>’serpent’ - The third digit in ZA for nuclides in isomeric states
-is 3 (e.g. 47310 for for Ag-110m).</p>
-<p>’mcnp’ - ZA = Z*1000 + A + (300 + 100*m). where m is the mth
-isomeric state (e.g. 47510 for Ag-110m)</p>
-<p>’nndc’ - Identical to ‘mcnp’, except Am242m1 is 95242 and Am242
-is 95642</p>
-</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name">
-<span class="sig-name descname"><span class="pre">convert_nuclide_code_to_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.convert_nuclide_code_to_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_name" title="Permalink to this definition">¶</a></dt>
-<dd><p>Converts Serpent2 nuclide code to symbolic nuclide name.
-If nuclide is in a metastable state, the nuclide name is concatenated
-with the letter <cite>m</cite> and the state index.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Nuclide code in Serpent2 format (<cite>47310.09c</cite>)</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>nuc_name</strong> – Symbolic nuclide name (<cite>Am242m1</cite>).</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam">
-<span class="sig-name descname"><span class="pre">convert_nuclide_code_to_zam</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.convert_nuclide_code_to_zam"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.convert_nuclide_code_to_zam" title="Permalink to this definition">¶</a></dt>
-<dd><p>Converts nuclide code from Serpent2 format to zam format.
-Checks Serpent2-specific meta stable-flag for zzaaam. For instance,
-47310 instead of 471101 for <cite>Ag-110m1</cite>. Metastable isotopes represented
-with <cite>aaa</cite> started with <code class="docutils literal notranslate"><span class="pre">3</span></code>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>int</em>) – Nuclide code in Serpent2 format (<cite>47310</cite>).</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>nuc_zzaam</strong> – Nuclide code in in <cite>zzaaam</cite> form (<cite>471101</cite>).</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile">
-<span class="sig-name descname"><span class="pre">create_runtime_matfile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.create_runtime_matfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.create_runtime_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Creates the runtime material file tracking burnable materials
-and inserts the path to this file in the Serpent2 runtime input file</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>file_lines</strong> – Serpent2 runtime input file with updated material file path.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list of str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings">
-<span class="sig-name descname"><span class="pre">get_neutron_settings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.get_neutron_settings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.get_neutron_settings" title="Permalink to this definition">¶</a></dt>
-<dd><p>Get neutron settings (no. of neutrons per cycle, no. of active and
-inactive cycles) from the Serpent2 input file</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry">
-<span class="sig-name descname"><span class="pre">insert_path_to_geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">lines</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.insert_path_to_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.insert_path_to_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts <code class="docutils literal notranslate"><span class="pre">include</span> <span class="pre">&lt;first_geometry_file&gt;</span></code> line on the 6th line of
-Serpent2 input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>lines</strong> – Serpent 2 runtime input file containing modified path to geometry</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list of str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent">
-<span class="sig-name descname"><span class="pre">map_nuclide_code_zam_to_serpent</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.map_nuclide_code_zam_to_serpent"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.map_nuclide_code_zam_to_serpent" title="Permalink to this definition">¶</a></dt>
-<dd><p>Creates a dictionary mapping nuclide codes in <cite>zzaaam</cite> format
-to Serpent2’s nuclide code format.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>nuc_code_map</strong> – Maps <cite>zzaaam</cite> nuclide codes to Serpent2
-nuclide codes.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Nuclide code in <cite>zzaaam</cite> format. For example,
-<cite>922350</cite> or <cite>982510</cite>.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Nuclide code in Serpent2 format. For instance, 92235.09c for a
-nuclide with cross section data or 982510 for a decay-only nuclide.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.read_depleted_materials">
-<span class="sig-name descname"><span class="pre">read_depleted_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_depleted_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.read_depleted_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads depleted materials from Serpent2’s <cite>*_dep.m</cite>
-file and returns a dictionary containing them.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>depleted_materials</strong> – Dictionary containing depleted materials.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding material composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.read_neutronics_parameters">
-<span class="sig-name descname"><span class="pre">read_neutronics_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_neutronics_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.read_neutronics_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads Serpent2 depletion step neutronics parameters and stores them
-in <a class="reference internal" href="#saltproc.serpent_depcode.SerpentDepcode" title="saltproc.serpent_depcode.SerpentDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a> object’s <a class="reference internal" href="#saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters" title="saltproc.serpent_depcode.SerpentDepcode.neutronics_parameters"><code class="xref py py-attr docutils literal notranslate"><span class="pre">neutronics_parameters</span></code></a>
-attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.read_plaintext_file">
-<span class="sig-name descname"><span class="pre">read_plaintext_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_plaintext_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.read_plaintext_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the content of a plaintext file for use by other methods.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>file_path</strong> (<em>str</em>) – Path to file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>file_lines</strong> – File lines.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list of str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.read_step_metadata">
-<span class="sig-name descname"><span class="pre">read_step_metadata</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.read_step_metadata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.read_step_metadata" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads Serpent2 depletion step metadata and stores it in the
-<a class="reference internal" href="#saltproc.serpent_depcode.SerpentDepcode" title="saltproc.serpent_depcode.SerpentDepcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">SerpentDepcode</span></code></a> object’s <a class="reference internal" href="#saltproc.serpent_depcode.SerpentDepcode.step_metadata" title="saltproc.serpent_depcode.SerpentDepcode.step_metadata"><code class="xref py py-attr docutils literal notranslate"><span class="pre">step_metadata</span></code></a> attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.run_depletion_step">
-<span class="sig-name descname"><span class="pre">run_depletion_step</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mpi_args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threads</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.run_depletion_step"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.run_depletion_step" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs a depletion step in Serpent2 as a subprocess.</p>
-<dl class="simple">
-<dt>i       Parameters</dt><dd><dl class="simple">
-<dt>mpi_args<span class="classifier">list of str</span></dt><dd><p>Arguments for running simulations on supercomputers using
-<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code> or similar programs.</p>
-</dd>
-<dt>threads<span class="classifier">int</span></dt><dd><p>Threads to use for shared-memory parallelism</p>
-</dd>
-</dl>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.set_power_load">
-<span class="sig-name descname"><span class="pre">set_power_load</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_lines</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">step_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.set_power_load"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.set_power_load" title="Permalink to this definition">¶</a></dt>
-<dd><p>Set the power for the current depletion step</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>file_lines</strong> (<em>list</em><em> of </em><em>str</em>) – Serpent2 runtime input file.</p></li>
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>step_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>file_lines</strong> – Serpent2 runtime input file with power load specification.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list of str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.switch_to_next_geometry">
-<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts line with path to next Serpent geometry file at the
-beginning of the Serpent iteration input file.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.update_depletable_materials">
-<span class="sig-name descname"><span class="pre">update_depletable_materials</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.update_depletable_materials"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.update_depletable_materials" title="Permalink to this definition">¶</a></dt>
-<dd><p>Update material file with reprocessed material compositions.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary containing reprocessed material compositions</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><code class="xref py py-class docutils literal notranslate"><span class="pre">Materialflow</span></code> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.serpent_depcode.SerpentDepcode.write_runtime_input">
-<span class="sig-name descname"><span class="pre">write_runtime_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/serpent_depcode.html#SerpentDepcode.write_runtime_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.serpent_depcode.SerpentDepcode.write_runtime_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Write Serpent2 runtime input file for running depletion step</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
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-  <section id="module-saltproc.sparger">
-<span id="saltproc-sparger-module"></span><h1>saltproc.sparger module<a class="headerlink" href="#module-saltproc.sparger" title="Permalink to this heading">¶</a></h1>
-<p>Sparger module</p>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.sparger.</span></span><span class="sig-name descname"><span class="pre">Sparger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Represents a gas sparger/bubble generator.</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.h_const">
-<span class="sig-name descname"><span class="pre">h_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.h_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Henry’s law constant.</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.gas_const">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.gas_const" title="Permalink to this definition">¶</a></dt>
-<dd><p>universal gas constant (Pa.m^3/mol-K)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.diffusivity">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.diffusivity" title="Permalink to this definition">¶</a></dt>
-<dd><p>liquid phase diffusivity (cm^2/s)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.exp_const">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.exp_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>exponential constant from following reference</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.length">
-<span class="sig-name descname"><span class="pre">length</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.length" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor length (m)
-Default: 10</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_salt">
-<span class="sig-name descname"><span class="pre">temp_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>salt temperature (K)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.area">
-<span class="sig-name descname"><span class="pre">area</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.area" title="Permalink to this definition">¶</a></dt>
-<dd><p>contactor cross-section (m^2)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eps">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eps" title="Permalink to this definition">¶</a></dt>
-<dd><p>Defines gas removal efficiency for sparger (bubble generator)
-using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.sherwood">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.sherwood" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations from different sources.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#saltproc.sparger.Sparger.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Henry’s law constants (Pa.m3/mol) for Xe, Kr, H from
-Sander, R.: Compilation of Henry’s law constants (version 4.0)
-for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,
-<a class="reference external" href="https://doi.org/10.5194/acp-15-4399-2015">https://doi.org/10.5194/acp-15-4399-2015</a>, 2015.
-[2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating
-Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge
-National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.
-[3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Sparger object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>length</strong> (<em>float</em>) – sparger/contractor length (m)
-Default: 10</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>temp_salt</strong> (<em>float</em>) – salt temperature (K)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>corr</strong> (<em>string</em>) – Sherwood correlations: ORNL-TM-2245 or Jaiqi’s
-(1) milestone report from Jiaqi [3]
-(2) ORNL-TM-2245 Eq.36 [2]
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values comes from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.calculate_removal_efficiency">
-<span class="sig-name descname"><span class="pre">calculate_removal_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.calculate_removal_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.calculate_removal_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Calculate the value of the removal efficiency for a given nuclide
-in this process.</p>
-<p>Overrides the existing method in :class`openmc.process.Process` to
-provide efficiency values of target isotopes calculated in the
-<code class="docutils literal notranslate"><span class="pre">eff()</span></code> function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_name</strong> (<em>str</em>) – Name of target nuclide to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for the given nuclide.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in sensitivity
-analysis
-:returns: <strong>pltdict</strong> – contains instances’ information
-:rtype: dict of str to str</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">2.5e-09</span></em><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.
-In this function, vl, mu, rho, number_sh, number_sc, number_re and kl
-are average liquid velocity (m/s), kinematic viscosity (Pa.s),
-density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,
-schmidt number, reynold number and liquid phase mass transfer
-coefficient (m/s), respectively.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary containing removal efficiency of each target isotope.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id3">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency using Eq. 4
-from Peebles report (ORNL-TM-2245).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>efficiency</strong> – removal efficiency of a specific chemical element.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id4">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">0,</span> <span class="pre">'Kr':</span> <span class="pre">1900,</span> <span class="pre">'Xe':</span> <span class="pre">2300}</span></em><a class="headerlink" href="#id4" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id5">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">8.314</span></em><a class="headerlink" href="#id5" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id6">
-<span class="sig-name descname"><span class="pre">h_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">2.6e-06,</span> <span class="pre">'Kr':</span> <span class="pre">2.5e-05,</span> <span class="pre">'Xe':</span> <span class="pre">4.3e-05}</span></em><a class="headerlink" href="#id6" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id7">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id7" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations.
-Sherwood correlations: ORNL-TM-2245 or Jaiqi
-(1) Jaiqi Ph.D. dissertation
-(2) ORNL-TM-2245 Eq.36
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id8">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">298.15</span></em><a class="headerlink" href="#id8" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-</dd></dl>
-
-</section>
-
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+  <section id="basics-of-using-saltproc">
+<span id="userguide-basics"></span><h1>Basics of Using SaltProc<a class="headerlink" href="#basics-of-using-saltproc" title="Permalink to this heading">¶</a></h1>
+<section id="running-a-model">
+<h2>Running a Model<a class="headerlink" href="#running-a-model" title="Permalink to this heading">¶</a></h2>
+<p>SaltProc is built in Python, so rather than calling an executable to run
+SaltProc, you call Python and invoke the SaltProc module. You use the <code class="docutils literal notranslate"><span class="pre">-i</span></code>
+flag to specify a path to the <a class="reference internal" href="../io_formats/saltproc_input.html#saltproc-input"><span class="std std-ref">SaltProc Input File</span></a>:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python -m saltproc -i saltproc_input.json
+</pre></div>
+</div>
+<p>The first thing SaltProc does when running a simulation is read this input file
+and validate that it is correct. At a minium, the input file requires six
+parameters to be filled by the user:</p>
+<div class="error admonition">
+<p class="admonition-title">Required</p>
+<dl class="simple">
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#proc-input-file-property"><span class="std std-ref">proc_input_file</span></a></dt><dd><p>This file describes the properties of each processing system component.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#dot-input-file-property"><span class="std std-ref">dot_input_file</span></a></dt><dd><p>This file describes the strucutre of the processing system as a graph</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#n-depletion-steps-property"><span class="std std-ref">n_depletion_steps</span></a></dt><dd><p>Specifies the number of depletion steps to run.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#depcode-property"><span class="std std-ref">depcode</span></a></dt><dd><p>This parameter contains runtime options for the transport code as a
+dictionary. The parameters expected change depending on which transport
+code is used, but at a minimum there will be parameters to specify
+geometry and material files for all transport codes. See
+<a class="reference internal" href="../io_formats/depcode_input.html#depcode-input"><span class="std std-ref">depcode Properties</span></a> for a full listing of these options.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#simulation-property"><span class="std std-ref">simulation</span></a></dt><dd><p>This parameter contains the name of the simulation, as well as
+options to restart the simulation from when it stopped (in the
+case of a runtime error), as well as an option to turn on geometry
+switching. See <a class="reference internal" href="../io_formats/simulation_input.html#simulation-input"><span class="std std-ref">simulation Properties</span></a> for a full listing of these
+options</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#reactor-property"><span class="std std-ref">reactor</span></a></dt><dd><p>This parameter contains setttings for the depletion simulation
+(number of timesteps, power level, timestep units). See
+<a class="reference internal" href="../io_formats/reactor_input.html#reactor-input"><span class="std std-ref">reactor Properties</span></a> for a full listing of these options.</p>
+</dd>
+</dl>
+</div>
+<div class="note admonition">
+<p class="admonition-title">Optional</p>
+<dl class="simple">
+<dt><a class="reference internal" href="../io_formats/saltproc_input.html#mpi-args-property"><span class="std std-ref">mpi_args</span></a></dt><dd><p>Users running a simulation on a computer with multiple cores, sockets, or
+nodes will benefit from utilizing all available hardware resources on the
+transport simulation. This parameter holds commands to execute a simulation
+using MPI for distribtued memory parallelism. Note that the user must include
+the executable in this parameter (<code class="docutils literal notranslate"><span class="pre">mpiexec</span></code>, <code class="docutils literal notranslate"><span class="pre">mpirun</span></code>, etc.). We discuss
+this in greater detail in <a class="reference internal" href="parallel.html#userguide-parallel"><span class="std std-ref">Running in Parallel</span></a>.</p>
+</dd>
+</dl>
+</div>
+<section id="javascript-object-notation-json">
+<h3>JavaScript Object Notation (JSON)<a class="headerlink" href="#javascript-object-notation-json" title="Permalink to this heading">¶</a></h3>
+<p>SaltProc uses <a class="reference external" href="https://www.json.org/json-en.html">JSON</a> to structure its input files. JSON is used as it has
+all the capabilities of stuctured markup language like <a class="reference external" href="https://www.w3.org/XML/">XML</a>, but intead
+of using tags, it is structured more or less like a dictionary data structure.
+This has the benefit of being extremely easy and quick to write by hand.</p>
+</section>
+<section id="creating-input-files">
+<h3>Creating input files<a class="headerlink" href="#creating-input-files" title="Permalink to this heading">¶</a></h3>
+<p>SaltProc input files are written by hand. We cover how to do this in detail
+in the next section of the User Guide.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>The majority of work preparing
+for a SaltProc simulation is not writing the SaltProc input file, but
+creating the model for the transport code. The steps and syntax for
+this vary from code to code. See
+<a class="reference internal" href="../overview.html#supported-codes"><span class="std std-ref">the list of supported codes</span></a> for links to
+documentation.</p>
+</div>
+</section>
+</section>
+<section id="viewing-and-analyzing-results">
+<h2>Viewing and Analyzing Results<a class="headerlink" href="#viewing-and-analyzing-results" title="Permalink to this heading">¶</a></h2>
+<p>After a simulation is completed by running <code class="docutils literal notranslate"><span class="pre">saltproc</span></code>, all of the transport
+code results and input files are stored in the <code class="docutils literal notranslate"><span class="pre">saltproc_runtime</span></code> directory
+(unless you provided a path for <a class="reference internal" href="../io_formats/saltproc_input.html#output-path-property"><span class="std std-ref">output_path</span></a> in the input file,
+in which case the results are stored in a directory with that path):</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">saltproc_results.h5</span></code></dt><dd><p>An HDF5 file containing material compositions for all depletable materials,
+including compositions before and after reprocessing, as well as delayed
+neutron data. See <a class="reference internal" href="../io_formats/databasefile.html#results-file"><span class="std std-ref">HDF5 Output File</span></a> for a full listing of parameters.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">step_i_data</span></code></dt><dd><p>A directory storing input and output files for the transport simulation(s)
+for the <span class="math notranslate nohighlight">\(i\)</span>-th depletion step.</p>
+</dd>
+</dl>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Users must use <a class="reference external" href="http://pytables.org">PyTables</a> to load and read results directly from
+the HDF5 file. An API for doing this is in development.</p>
+</div>
+</section>
+<section id="physical-units">
+<h2>Physical Units<a class="headerlink" href="#physical-units" title="Permalink to this heading">¶</a></h2>
+<p>SaltProc results use the following units unless otherwise specified.</p>
+<table class="docutils align-default">
+<colgroup>
+<col style="width: 28%" />
+<col style="width: 48%" />
+<col style="width: 24%" />
+</colgroup>
+<thead>
+<tr class="row-odd"><th class="head"><p>Measure</p></th>
+<th class="head"><p>Default unit</p></th>
+<th class="head"><p>Symbol</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p>mass</p></td>
+<td><p>kilogram</p></td>
+<td><p>kg</p></td>
+</tr>
+<tr class="row-odd"><td><p>power</p></td>
+<td><p>watt</p></td>
+<td><p>W</p></td>
+</tr>
+<tr class="row-even"><td><p>time</p></td>
+<td><p>days</p></td>
+<td><p>d</p></td>
+</tr>
+</tbody>
+</table>
+</section>
+</section>
+
+
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">A Beginner’s Guide to SaltProc</a><ul>
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+<li class="toctree-l3"><a class="reference internal" href="#how-does-it-work">How does it work?</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#what-do-i-need-to-know">What do I need to know?</a></li>
+</ul>
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+<li class="toctree-l2"><a class="reference internal" href="basics.html">Basics of Using SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="input.html">Creating a SaltProc input file</a></li>
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+             
+  <section id="a-beginner-s-guide-to-saltproc">
+<span id="userguide-beginners"></span><h1>A Beginner’s Guide to SaltProc<a class="headerlink" href="#a-beginner-s-guide-to-saltproc" title="Permalink to this heading">¶</a></h1>
+<section id="what-does-saltproc-do">
+<h2>What does SaltProc do?<a class="headerlink" href="#what-does-saltproc-do" title="Permalink to this heading">¶</a></h2>
+<p>In a nutshell, SaltProc is an interface code for transport solvers with
+depletion capabilites that simulates chemical reprocessing of fuel. In general,
+there are two ways to simulate chemical fuel reprocessing: continuous, and
+batchwise. As an interface code, SaltProc uses a batchwise approach to simulate
+chemical fuel reprocessing. See <a class="reference internal" href="../methods/reprocessing.html#methods-reprocessing"><span class="std std-ref">Reprocessing Methods</span></a> for further details on
+how this works.</p>
+</section>
+<section id="how-does-it-work">
+<h2>How does it work?<a class="headerlink" href="#how-does-it-work" title="Permalink to this heading">¶</a></h2>
+<p>SaltProc uses abstraction to represent chemical reprocessing components –
+hereon referred to as <em>processes</em>. These processes are linked together using a
+graph. SaltProc routes depleted materials through this graph and applies the
+respecive process at each node. See <a class="reference internal" href="../methods/reprocessing.html#methods-reprocessing"><span class="std std-ref">Reprocessing Methods</span></a> for a more in-depth
+breakdown of this design.</p>
+</section>
+<section id="what-do-i-need-to-know">
+<h2>What do I need to know?<a class="headerlink" href="#what-do-i-need-to-know" title="Permalink to this heading">¶</a></h2>
+<p>If you are starting to work with SaltProc, there are a few things you should be familiar with:</p>
+<blockquote>
+<div><ul class="simple">
+<li><p>You should be comfortable with working in a command line environment.</p></li>
+<li><p>You should be familiar with at least one of the supported transport solvers.</p></li>
+</ul>
+<p>See <a class="reference internal" href="../overview.html#supported-codes"><span class="std std-ref">the list of supported codes</span></a> for a list of
+currently supported transport solvers.</p>
+</div></blockquote>
+</section>
+</section>
+
+
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+          </div>
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+           <div itemprop="articleBody">
+             
+  <section id="user-s-guide">
+<span id="userguide"></span><h1>User’s Guide<a class="headerlink" href="#user-s-guide" title="Permalink to this heading">¶</a></h1>
+<p>Welcome to the SaltProc User guide.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>The SaltProc user guide is a work in progress.
+Information contained within may change, so make sure to check the
+release notes for updates!</p>
+</div>
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+<li class="toctree-l2"><a class="reference internal" href="basics.html">Basics of Using SaltProc</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Creating a SaltProc input file</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#creating-a-json-file">Creating a JSON file</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#base-paremters">Base paremters</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#transport-code-parameters">Transport code parameters</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#serpent2">Serpent2</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#openmc">OpenMC</a></li>
+</ul>
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+  <section id="creating-a-saltproc-input-file">
+<span id="userguide-input"></span><h1>Creating a SaltProc input file<a class="headerlink" href="#creating-a-saltproc-input-file" title="Permalink to this heading">¶</a></h1>
+<p>The SaltProc input file passes three categories of information to the program:</p>
+<ol class="arabic simple">
+<li><p>Paths to files that describe the reprocessing system</p></li>
+<li><p>Paths to template files for the transport code.</p></li>
+<li><p>Depletion settings</p></li>
+</ol>
+<p>In the following sections, we will create an example SaltProc input file, and
+explain the purpose for each input variable. For a more detailed breakdown of
+the inputs, check the <a class="reference internal" href="../io_formats/index.html#io-formats-input-files"><span class="std std-ref">Input Files</span></a> page.</p>
+<section id="creating-a-json-file">
+<h2>Creating a JSON file<a class="headerlink" href="#creating-a-json-file" title="Permalink to this heading">¶</a></h2>
+<p>JSON files themselves are not that complicated. They consist of key-value pairs,
+much like a dictionary in Python. The entire JSON files needs to be wrapped with curly brackets, so we start our file like so:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+<section id="base-paremters">
+<h2>Base paremters<a class="headerlink" href="#base-paremters" title="Permalink to this heading">¶</a></h2>
+<p>There are two required base parameters: <a class="reference internal" href="../io_formats/saltproc_input.html#proc-input-file-property"><span class="std std-ref">proc_input_file</span></a>, a path to the file
+that defines processes, and <a class="reference internal" href="../io_formats/saltproc_input.html#dot-input-file-property"><span class="std std-ref">dot_input_file</span></a>, a path to the file that defines
+the process graph. We will learn how to create these files in the next chapter,
+but for now we just need to specify a path. We recommend storing all the input
+files in the same directory, but this is not requried.</p>
+<p>Let’s name our process file <cite>processes.json</cite> and the process graph file <cite>graph.dot</cite>:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;proc_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;processes.json&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;dot_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;graph.dot&quot;</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+<section id="transport-code-parameters">
+<h2>Transport code parameters<a class="headerlink" href="#transport-code-parameters" title="Permalink to this heading">¶</a></h2>
+<p>As explained in <span class="xref std std-ref">methods_coupling</span>, SaltProc uses template files provided
+by the user to create runtime files that are used as inputs to the transport
+code for each depletion step. The <a class="reference internal" href="../io_formats/saltproc_input.html#depcode-property"><span class="std std-ref">depcode</span></a> setting in the
+SaltProc input file store paths to these template files, as well as other
+settings. The only two input parameters that have the same format for
+different transport codes are <a class="reference internal" href="../io_formats/depcode_input.html#codename-property"><span class="std std-ref">codename</span></a> and
+<a class="reference internal" href="../io_formats/depcode_input.html#geo-file-paths-property"><span class="std std-ref">geo_file_paths</span></a>. <code class="docutils literal notranslate"><span class="pre">codename</span></code> is a string that indicates the
+transport code you are using. Accepted values are lowercased versions of the
+supported transport code (e.g. “serpent”, “openmc”). <code class="docutils literal notranslate"><span class="pre">geo_file_paths</span></code> is a
+list of paths to geometry files <a class="footnote-reference brackets" href="#f1" id="id1">1</a>. At least one path to a geometry file must
+be given, and for the purposes of this guide this is sufficient.</p>
+<p>Let’s briefly break down the minimum requirements for each supported transport
+code.</p>
+<section id="serpent2">
+<h3>Serpent2<a class="headerlink" href="#serpent2" title="Permalink to this heading">¶</a></h3>
+<p>Only two additional parameters are needed for Serpent2 coupling:</p>
+<dl class="simple">
+<dt><a class="reference internal" href="../io_formats/depcode_input.html#serpent-template-input-file-path-property"><span class="std std-ref">template_input_file_path</span></a></dt><dd><p>A path to a template input file. We describe the structure of this file in <a class="reference internal" href="templates.html#userguide-templates-serpent"><span class="std std-ref">Serpent 2 Template Files</span></a>.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/depcode_input.html#zaid-convention-property"><span class="std std-ref">zaid_convention</span></a></dt><dd><p>A string that tells SaltProc what convention to use for the ZAIDs of
+metastable isotopes. By default, SaltProc uses the <code class="docutils literal notranslate"><span class="pre">mcnp</span></code> convention.</p>
+</dd>
+</dl>
+<p>Let’s assume that we name our template input file <cite>template.serpent</cite>. If we have
+verified that we are okay to use the default value for <code class="docutils literal notranslate"><span class="pre">zaid_convention</span></code>, then
+we have:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;proc_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;processes.json&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;dot_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;graph.dot&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;depcode&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;codename&quot;</span><span class="p">:</span><span class="w"> </span><span class="nt">&quot;serpent&quot;</span><span class="p">:</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;geo_file_paths&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;geometry.ini&quot;</span><span class="p">],</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;template_input_file_path&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;template.serpent&quot;</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+<section id="openmc">
+<h3>OpenMC<a class="headerlink" href="#openmc" title="Permalink to this heading">¶</a></h3>
+<p>The OpenMC inputs are more complicated. There are two reasons for this:</p>
+<ol class="arabic simple">
+<li><p>OpenMC uses separate input files for material, geometry, settings, and tally parameters, and uses strict naming for these input files.</p></li>
+<li><p>Configuring OpenMC’s depletion capabilities must be done via the Python API, so what normally would be handled in the template input file must be handled directly in the SaltProc input file.</p></li>
+</ol>
+<p>Fortunately, SaltProc doesn’t require users to touch these setting at all if
+they want to use the default options. Users interested in configuring their
+OpenMC depletion settings should advise the <a class="reference external" href="https://docs.openmc.org/en/stable/pythonapi/deplete.html">deplete module API</a> as well as the
+<a class="reference external" href="https://docs.openmc.org/en/stable/usersguide/depletion.html">user guide section on depletion</a> to familiarize themselves with the various
+options, then look at the options in <a class="reference internal" href="../io_formats/depcode_input.html#openmc-depletion-settings-property"><span class="std std-ref">depletion_settings</span></a>.</p>
+<p>The <code class="docutils literal notranslate"><span class="pre">depcode</span></code> paramter for OpenMC also has the
+<a class="reference internal" href="../io_formats/depcode_input.html#openmc-template-input-file-path-property"><span class="std std-ref">template_input_file_path</span></a> parameter, except it is an
+object that in turn requires two file paths:
+<code class="docutils literal notranslate"><span class="pre">materials</span></code> for the materials file, and <code class="docutils literal notranslate"><span class="pre">settings</span></code> for the settings file.
+There is an additonal required parameter, <a class="reference internal" href="../io_formats/depcode_input.html#openmc-chain-file-path-property"><span class="std std-ref">chain_file_path</span></a>
+which is a path to an OpenMC depletion chain file. Suppose we prepend
+<code class="docutils literal notranslate"><span class="pre">template_</span></code> to the names of our OpenMC input files:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;proc_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;processes.json&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;dot_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;graph.dot&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;depcode&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;codename&quot;</span><span class="p">:</span><span class="w"> </span><span class="nt">&quot;openmc&quot;</span><span class="p">:</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;geo_file_paths&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;geometry.xml&quot;</span><span class="p">],</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;template_input_file_path&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;materials&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;template_materials.xml&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;settings&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;template_settings.xml&quot;</span><span class="w"></span>
+<span class="w">        </span><span class="p">},</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;chain_file_path&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;chain_simple.xml&quot;</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+</section>
+<section id="simulation-parameters">
+<h2>Simulation parameters<a class="headerlink" href="#simulation-parameters" title="Permalink to this heading">¶</a></h2>
+<p>Most users will only need to set the <code class="docutils literal notranslate"><span class="pre">sim_name</span></code> parameter. In this case,
+we can just pick <code class="docutils literal notranslate"><span class="pre">&quot;saltproc_example&quot;</span></code>:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;proc_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;processes.json&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;dot_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;graph.dot&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;depcode&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;simulation&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;sim_name&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;saltproc_example&quot;</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>There are two optional parameters that are important to make note of:</p>
+<dl class="simple">
+<dt><a class="reference internal" href="../io_formats/simulation_input.html#restart-flag-property"><span class="std std-ref">restart_flag</span></a></dt><dd><p>If a simulation fails before all the depletion steps have been calculated, the
+users can set <code class="docutils literal notranslate"><span class="pre">restart_flag</span></code> to <code class="docutils literal notranslate"><span class="pre">true</span></code> to run the simulation
+staring the last completed depletion step</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/simulation_input.html#adjust-geo-property"><span class="std std-ref">adjust_geo</span></a></dt><dd><p>Setting <code class="docutils literal notranslate"><span class="pre">adjut_geo</span></code> to <code class="docutils literal notranslate"><span class="pre">true</span></code> will instruct SaltProc to switch to the next
+geometry file in <code class="docutils literal notranslate"><span class="pre">geo_file_paths</span></code> when <span class="math notranslate nohighlight">\(k_\text{eff}\)</span> drops below 1.</p>
+</dd>
+</dl>
+</section>
+<section id="depletion-step-parameters">
+<h2>Depletion step parameters<a class="headerlink" href="#depletion-step-parameters" title="Permalink to this heading">¶</a></h2>
+<p>In general, depletion parameters other than the defualts (e.g. timestepper
+method, solver used for the Bateman equations, normalization, etc.) should be
+set in the template input file when possible. The rationale for this is that
+these settings have more to do with the internal depletion calculations of the
+transport code than they do with SaltProc execution. The obvious exception to
+this are the delpletion step settings.</p>
+<p>The <code class="docutils literal notranslate"><span class="pre">reactor</span></code> parameter provides four parameters to specify depletion settings:</p>
+<dl class="simple">
+<dt><a class="reference internal" href="../io_formats/reactor_input.html#power-levels-property"><span class="std std-ref">power_levels</span></a></dt><dd><p>This property describes the power level at each depletion timestep. If a user
+wants to use the same power level for each depletion timestep, they can pass
+a singleton list instead and set <a class="reference internal" href="../io_formats/saltproc_input.html#n-depletion-steps-property"><span class="std std-ref">n_depletion_steps</span></a>.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/reactor_input.html#depletion-timesteps-property"><span class="std std-ref">depletion_timesteps</span></a></dt><dd><p>This property described the length of each depletion step.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/reactor_input.html#timestep-type-property"><span class="std std-ref">timestep_type</span></a></dt><dd><p>The value of this property (<code class="docutils literal notranslate"><span class="pre">cumulative</span></code> or <code class="docutils literal notranslate"><span class="pre">stepwise</span></code>) tells SaltProc how
+to interpret <code class="docutils literal notranslate"><span class="pre">depletion_timesteps</span></code>. If <code class="docutils literal notranslate"><span class="pre">cumulative</span></code>, each value in
+<code class="docutils literal notranslate"><span class="pre">depletion</span> <span class="pre">timesteps</span></code> is assumed to be an absolute time, so the depletion
+step lengths are the differences between consecutive entries. If
+<code class="docutils literal notranslate"><span class="pre">stepwise</span></code>, each value in <code class="docutils literal notranslate"><span class="pre">depletion_stimesetps</span></code> is assumed to be the
+length of each depletion step. <code class="docutils literal notranslate"><span class="pre">stepwise</span></code> is the default value for this
+parameter.</p>
+</dd>
+<dt><a class="reference internal" href="../io_formats/reactor_input.html#timestep-units-property"><span class="std std-ref">timestep_units</span></a></dt><dd><p>This parameter specifies the units for <code class="docutils literal notranslate"><span class="pre">depletion_timesteps</span></code></p>
+</dd>
+</dl>
+<p>Let’s assume we want to run a depletion simultion for 36 days using 3-day
+timesteps at 1000MW:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;proc_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;processes.json&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;dot_input_file&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;graph.dot&quot;</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;n_depletion_steps&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">12</span><span class="p">,</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;depcode&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;simulation&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;sim_name&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;saltproc_example&quot;</span><span class="w"></span>
+<span class="w">    </span><span class="p">},</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;reactor&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;depletion_timesteps&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="mi">3</span><span class="p">],</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;power_levels&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="mi">1000</span><span class="p">],</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;timestep_units&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;d&quot;</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>With this, our input file is finished!</p>
+<p class="rubric">Footnotes</p>
+<dl class="footnote brackets">
+<dt class="label" id="f1"><span class="brackets"><a class="fn-backref" href="#id1">1</a></span></dt>
+<dd><p>As explained in <span class="xref std std-ref">methods_geometry_switching</span>, SaltProc allows a user to provide multiple geometry configurations that are switched to sequentially if that option is enabled and <span class="math notranslate nohighlight">\(k_\text{eff}\)</span> drops below 1</p>
+</dd>
+</dl>
+</section>
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+
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+             
+  <section id="running-in-parallel">
+<span id="userguide-parallel"></span><h1>Running in Parallel<a class="headerlink" href="#running-in-parallel" title="Permalink to this heading">¶</a></h1>
+<p>If you have installed your <a class="reference internal" href="../overview.html#supported-codes"><span class="std std-ref">supported depletion code</span></a>
+with support for shared or distributed memory parallelism (typically via OpenMP
+or MPI, respectively) support, then you can take advantage of that parallelism
+in SaltProc as well.</p>
+<section id="shared-memory-parallelsim">
+<span id="parallel-shared"></span><h2>Shared-Memory Parallelsim<a class="headerlink" href="#shared-memory-parallelsim" title="Permalink to this heading">¶</a></h2>
+<p>To specify the number of theads to use in shared memory parallelism, use the
+<code class="docutils literal notranslate"><span class="pre">-s</span></code> or <code class="docutils literal notranslate"><span class="pre">--threads</span></code> command line argument when calling SaltProc. Note that
+this argument currently does not affect how OpenMC uses shared-memory
+parallelsim, as there is no way to specify the number of threads used
+in depletion. The default behavior is to use all available threads.
+User’s should read more about this
+<a class="reference external" href="https://docs.openmc.org/en/stable/usersguide/parallel.html#shared-memory-parallelism-openmp">here</a>.</p>
+</section>
+<section id="distributed-memory-parallelism">
+<span id="parallel-distributed"></span><h2>Distributed-Memory Parallelism<a class="headerlink" href="#distributed-memory-parallelism" title="Permalink to this heading">¶</a></h2>
+<p>SaltProc provides the <a class="reference internal" href="../io_formats/saltproc_input.html#mpi-args-property"><span class="std std-ref">mpi_args</span></a> parameter in the input file to
+give users flexible access to programs like <code class="docutils literal notranslate"><span class="pre">mpiexec</span></code>. <code class="docutils literal notranslate"><span class="pre">mpi_args</span></code> is a list
+of strings that is appended to the subprocess call for each depletion step.</p>
+<p>For example, if we are using <code class="docutils literal notranslate"><span class="pre">mpiexec</span></code>, and want to do a distributed-memory run on
+two nodes, then in our input file, we should have the following parameter:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="nt">&quot;mpi_args&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;mpiexec&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;-n&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;2&quot;</span><span class="p">]</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+</section>
+
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+             
+  <section id="creating-processing-system-files">
+<span id="userguide-processing-system"></span><h1>Creating Processing System Files<a class="headerlink" href="#creating-processing-system-files" title="Permalink to this heading">¶</a></h1>
+<p>SaltProc uses two different files to represent a processing system:</p>
+<blockquote>
+<div><ul class="simple">
+<li><p>A <code class="docutils literal notranslate"><span class="pre">.json</span></code> file defining processing system components</p></li>
+<li><p>A <code class="docutils literal notranslate"><span class="pre">.dot</span></code> file linking the processing system components in a graph</p></li>
+</ul>
+</div></blockquote>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>An API to write the file defining processing system components is in
+development, but for now it must be written by hand.</p>
+</div>
+<section id="defining-processing-system-components">
+<h2>Defining Processing System Components<a class="headerlink" href="#defining-processing-system-components" title="Permalink to this heading">¶</a></h2>
+<p>The processing system components are defined for each material
+that a user want to process.</p>
+<div class="admonition warning">
+<p class="admonition-title">Warning</p>
+<p>The of the material in the processing system components file <strong>must</strong> match
+the name of the corresponding material in the transport code.</p>
+</div>
+<p>We start with an empty JSON file:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>Then add the materials we want to process. For simpilicty, let’s only consider
+one material, <code class="docutils literal notranslate"><span class="pre">fuel</span></code>:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;fuel&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;extraction_processes&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{}</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>Inside the <code class="docutils literal notranslate"><span class="pre">fuel</span></code> key, we define our processing system components via the
+<code class="docutils literal notranslate"><span class="pre">extraction_processes</span></code> parameter. There are two components that every model
+must have: <code class="docutils literal notranslate"><span class="pre">core_outlet</span></code> – which marks the beginning of the reprocessing
+system – and <code class="docutils literal notranslate"><span class="pre">core_inlet</span></code> – which marks the end of the reprocessing system.
+Each process has several fields that must be filled by the user:</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">capacity</span></code></dt><dd><p>Maximum mass flow rate the process can handle in <span class="math notranslate nohighlight">\(g/s\)</span>. This parameter is
+currently unused, but could be useful in the future for more physics-based
+implementations of reprocessing.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">efficiency</span></code></dt><dd><p>Dictionary mapping element names to extraction efficiencies. These should be empty
+for the <code class="docutils literal notranslate"><span class="pre">core_outlet</span></code> and <code class="docutils literal notranslate"><span class="pre">core_inlet</span></code> processes since they represetnt the
+beginning and end of the processng system.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">mass_flowrate</span></code></dt><dd><p>The mass flowrate of the process in <span class="math notranslate nohighlight">\(g/s\)</span>.</p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">volume</span></code></dt><dd><p>The volume of the processing component in <span class="math notranslate nohighlight">\(cm^3\)</span>.</p>
+</dd>
+</dl>
+<p>Let’s create <code class="docutils literal notranslate"><span class="pre">core_inlet</span></code> and <code class="docutils literal notranslate"><span class="pre">core_outlet</span></code> first, assuming a capacity
+of <span class="math notranslate nohighlight">\(9.92 \cdot 10^6\)</span> <span class="math notranslate nohighlight">\(g/s\)</span>, and that the mass flowrate is equal to the
+capacity:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;fuel&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;extraction_processes&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_inlet&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_outlet&quot;</span><span class="p">:</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">        </span><span class="p">}</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>Now, let’s create three processes that acutally do things: <code class="docutils literal notranslate"><span class="pre">gas_separator</span></code>,
+which removes Kr, Xe, and H from the fuel, <code class="docutils literal notranslate"><span class="pre">nickel_filter</span></code>, which removes
+dissolved metals from the fuel, and <code class="docutils literal notranslate"><span class="pre">reductive_extractor</span></code>, which removes
+fission procducts from the fuel:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;fuel&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;extraction_processes&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_inlet&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_outlet&quot;</span><span class="p">:</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">            </span><span class="p">}</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;gas_separator&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Kr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Xe&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;H&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">10000000</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;nickel_filter&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Se&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Nb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Mo&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Tc&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ru&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Rh&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ag&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Te&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">11</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;reductive_extractor&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pa&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Y&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;La&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ce&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Nd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pm&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sm&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Gd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Eu&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.2</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Rb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Cs&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ba&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Zr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Cd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;In&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sn&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Br&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.842</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;I&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.842</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">11</span><span class="w"></span>
+<span class="w">        </span><span class="p">}</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+<p>In addition to <code class="docutils literal notranslate"><span class="pre">extraction_processes</span></code>, we can also define <code class="docutils literal notranslate"><span class="pre">feeds</span></code>, which
+are materials added to the reprocessed material after the processing is
+performed. <code class="docutils literal notranslate"><span class="pre">feeds</span></code> require the following parameters:</p>
+<dl class="simple">
+<dt><code class="docutils literal notranslate"><span class="pre">density</span></code></dt><dd><p>Density of the material in <span class="math notranslate nohighlight">\(g/cm^3\)</span></p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">volume</span></code></dt><dd><p>Volume of the material in <span class="math notranslate nohighlight">\(cm^3\)</span></p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">mass</span></code></dt><dd><p>Mass of the material in <span class="math notranslate nohighlight">\(g\)</span></p>
+</dd>
+<dt><code class="docutils literal notranslate"><span class="pre">comp</span></code></dt><dd><p>A dictionary mapping nuclide names to weight-percent.</p>
+</dd>
+</dl>
+<p>In this case, we can add a simple <code class="docutils literal notranslate"><span class="pre">fuel_salt</span></code> feed:</p>
+<div class="highlight-json notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="w"></span>
+<span class="w">    </span><span class="nt">&quot;fuel&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;extraction_processes&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_inlet&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;core_outlet&quot;</span><span class="p">:</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">0</span><span class="w"></span>
+<span class="w">            </span><span class="p">}</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;gas_separator&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Kr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Xe&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;H&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">10000000</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;nickel_filter&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Se&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Nb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Mo&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Tc&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ru&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Rh&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ag&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Te&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">11</span><span class="w"></span>
+<span class="w">            </span><span class="p">},</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;reductive_extractor&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;capacity&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;efficiency&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pa&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">1</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Y&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;La&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ce&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Nd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Pm&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sm&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Gd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.8904</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Eu&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.2</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Rb&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Cs&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Ba&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.032</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Zr&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Cd&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;In&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Sn&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.425</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Br&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.842</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;I&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.842</span><span class="w"></span>
+<span class="w">                </span><span class="p">},</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass_flowrate&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">9920000</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mi">11</span><span class="w"></span>
+<span class="w">        </span><span class="p">},</span><span class="w"></span>
+<span class="w">        </span><span class="nt">&quot;feeds&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">            </span><span class="nt">&quot;fuel_salt&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;density&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">3.35</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;volume&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">1e8</span><span class="p">,</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;mass&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">3.35e</span><span class="w"></span>
+<span class="w">                </span><span class="nt">&quot;comp&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Li-7&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.07875361306856505</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Be-9&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.022558425114333525</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Fl-19&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.4540013117137259</span><span class="p">,</span><span class="w"></span>
+<span class="w">                    </span><span class="nt">&quot;Th-232&quot;</span><span class="p">:</span><span class="w"> </span><span class="mf">0.4446866501033755</span><span class="w"></span>
+<span class="w">                </span><span class="p">}</span><span class="w"></span>
+<span class="w">            </span><span class="p">}</span><span class="w"></span>
+<span class="w">        </span><span class="p">}</span><span class="w"></span>
+<span class="w">    </span><span class="p">}</span><span class="w"></span>
+<span class="p">}</span><span class="w"></span>
+</pre></div>
+</div>
+</section>
+<section id="defining-the-processing-system-graph">
+<h2>Defining the Processing System Graph<a class="headerlink" href="#defining-the-processing-system-graph" title="Permalink to this heading">¶</a></h2>
+<p>As mentioned earlier, processing system graphs must be <em>acyclic directed</em> graphs.
+<em>Directed</em> means each edge in the graphs connecting nodes has a specific direction
+associated with it, and <em>acyclic</em> means there shouldn’t be any “loops”, that is,
+there should be no way to traverse along an edge that takes you back to a node
+you already visited.</p>
+<p>SaltProc uses the <a class="reference external" href="http://networkx.github.io">networkx</a> package to process graphs, and this is also
+how they should be constructed. We start by importing <code class="docutils literal notranslate"><span class="pre">networkx</span></code> and creating
+a <code class="docutils literal notranslate"><span class="pre">DiGraph</span></code>:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
+<span class="n">system</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">DiGraph</span>
+</pre></div>
+</div>
+<p>Next, we need to add nodes to our graph. Each processing system component we defined
+previously is a node:</p>
+<div class="admonition warning">
+<p class="admonition-title">Warning</p>
+<p>The names of the nodes <strong>must</strong> match the names of the processing system
+components.</p>
+</div>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">nodes</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">,</span> <span class="s1">&#39;core_inlet&#39;</span><span class="p">,</span> <span class="s1">&#39;gas_separator&#39;</span><span class="p">,</span> <span class="s1">&#39;nickel_filter&#39;</span><span class="p">,</span> <span class="s1">&#39;reductive_extractor&#39;</span><span class="p">]</span>
+<span class="k">for</span> <span class="n">node</span> <span class="ow">in</span> <span class="n">nodes</span><span class="p">:</span>
+    <span class="n">system</span><span class="o">.</span><span class="n">add_node</span><span class="p">(</span><span class="n">node</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Finally, we need to connect the nodes with edges. The graph strucure
+of acyclic directed graphs can get fairly complicated, but for this example
+our graph is going to be a single point-to-point path:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">edges</span> <span class="o">=</span> <span class="p">[(</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">,</span> <span class="s1">&#39;gas_separator&#39;</span><span class="p">),</span>
+         <span class="p">(</span><span class="s1">&#39;gas_separator&#39;</span><span class="p">,</span> <span class="s1">&#39;nickel_filter&#39;</span><span class="p">),</span>
+         <span class="p">(</span><span class="s1">&#39;nickel_filter&#39;</span><span class="p">,</span> <span class="s1">&#39;reductive_extractor&#39;</span><span class="p">),</span>
+         <span class="p">(</span><span class="s1">&#39;reductive_extractor&#39;</span><span class="p">,</span> <span class="s1">&#39;core_inlet&#39;</span><span class="p">)]</span>
+<span class="k">for</span> <span class="n">edge</span> <span class="ow">in</span> <span class="n">edges</span><span class="p">:</span>
+    <span class="n">system</span><span class="o">.</span><span class="n">add_edge</span><span class="p">(</span><span class="o">*</span><span class="n">edge</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>To ensure that our graph is acyclic, we can run</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">nx</span><span class="o">.</span><span class="n">algorithms</span><span class="o">.</span><span class="n">is_directed_acyclic_graph</span><span class="p">(</span><span class="n">system</span><span class="p">)</span>
+</pre></div>
+</div>
+<p>Finally, we need to export this graph to a <code class="docutils literal notranslate"><span class="pre">.dot</span></code> file:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">networkx.drawing</span> <span class="k">as</span> <span class="nn">nxd</span>
+<span class="n">nxd</span><span class="o">.</span><span class="n">nx_pydot</span><span class="o">.</span><span class="n">write_dot</span><span class="p">(</span><span class="n">system</span><span class="p">,</span> <span class="s1">&#39;graph.dot&#39;</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
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+  <title>Executables and Scripts &mdash; Saltproc 0.5.dev documentation</title>
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+<li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">User’s Guide</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="beginners.html">A Beginner’s Guide to SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="basics.html">Basics of Using SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="input.html">Creating a SaltProc input file</a></li>
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+<li class="toctree-l2 current"><a class="current reference internal" href="#">Executables and Scripts</a><ul>
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+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
+</ul>
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+           <div itemprop="articleBody">
+             
+  <section id="executables-and-scripts">
+<span id="userguide-scripts"></span><h1>Executables and Scripts<a class="headerlink" href="#executables-and-scripts" title="Permalink to this heading">¶</a></h1>
+<section id="saltproc">
+<h2><code class="docutils literal notranslate"><span class="pre">saltproc</span></code><a class="headerlink" href="#saltproc" title="Permalink to this heading">¶</a></h2>
+<p>Once you have a model built (see <a class="reference internal" href="basics.html#userguide-basics"><span class="std std-ref">Basics of Using SaltProc</span></a>), you can run SaltProc
+from the command line!</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python -m saltproc -i saltproc_input.json
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">saltproc</span></code> accepts the following command line flags:</p>
+<dl class="option-list">
+<dt><kbd><span class="option">-s</span>, <span class="option">--threads</span></kbd></dt>
+<dd><p>Threads to use for shared-memory parallelism</p>
+</dd>
+<dt><kbd><span class="option">-h</span>, <span class="option">--help</span></kbd></dt>
+<dd><p>Show help message</p>
+</dd>
+</dl>
+</section>
+<section id="other-scripts">
+<h2>Other scripts<a class="headerlink" href="#other-scripts" title="Permalink to this heading">¶</a></h2>
+<p>Additional scripts can be found in the :ref:<a href="#id1"><span class="problematic" id="id2">`</span></a>scripts directroy &lt;<a class="reference external" href="https://github.com/arfc/saltproc/tree/master/scripts">https://github.com/arfc/saltproc/tree/master/scripts</a>&gt;.</p>
+</section>
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diff --git a/master/userguide/templates.html b/master/userguide/templates.html
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+++ b/master/userguide/templates.html
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
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+  <title>Template and Runtime Files &mdash; Saltproc 0.5.dev documentation</title>
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+<li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">User’s Guide</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="beginners.html">A Beginner’s Guide to SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="basics.html">Basics of Using SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="input.html">Creating a SaltProc input file</a></li>
+<li class="toctree-l2"><a class="reference internal" href="processing_system.html">Creating Processing System Files</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Template and Runtime Files</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#serpent-2-template-files">Serpent 2 Template Files</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#openmc-template-files">OpenMC Template Files</a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="scripts.html">Executables and Scripts</a></li>
+<li class="toctree-l2"><a class="reference internal" href="troubleshooting.html">Troubleshooting</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">Running in Parallel</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
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+          <li class="breadcrumb-item"><a href="index.html">User’s Guide</a></li>
+      <li class="breadcrumb-item active">Template and Runtime Files</li>
+      <li class="wy-breadcrumbs-aside">
+            <a href="../_sources/userguide/templates.rst.txt" rel="nofollow"> View page source</a>
+      </li>
+  </ul>
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+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+             
+  <section id="template-and-runtime-files">
+<span id="userguide-templates"></span><h1>Template and Runtime Files<a class="headerlink" href="#template-and-runtime-files" title="Permalink to this heading">¶</a></h1>
+<p>As described in <span class="xref std std-ref">methods_coupling</span>, SaltProc uses file-based coupling to
+iterface with depletion solvers. A user provides the template input file(s),
+and SaltProc makes a temporary copy used for running depletion steps that it
+can modify and update as needed.</p>
+<section id="serpent-2-template-files">
+<span id="userguide-templates-serpent"></span><h2>Serpent 2 Template Files<a class="headerlink" href="#serpent-2-template-files" title="Permalink to this heading">¶</a></h2>
+<p>A valid Serpent 2 template input file must have at least the following:</p>
+<blockquote>
+<div><ul class="simple">
+<li><p>Burnable materials linked via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#include">include card</a> The burnable material cards <strong>must</strong> include the <code class="docutils literal notranslate"><span class="pre">fix</span></code> option.</p></li>
+<li><p>Non-burnable materials instantiated directly in the file <strong>OR</strong> via an <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#include">include card</a> <em>after</em> the burnable materials.</p></li>
+<li><p>Neutron particle parameters set via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_pop">set pop card</a>.</p></li>
+<li><p>Spontaneous fission yielf sublibray via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_sfylib">set sfylib card</a></p></li>
+</ul>
+</div></blockquote>
+<p>Template input files should also have the following (they are not neccesary if
+the user has used the appropriate environment variables to specify them. See
+the links for each card for more details):</p>
+<blockquote>
+<div><ul class="simple">
+<li><p>The cross section data directory file via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_acelib">set acelib card</a>.</p></li>
+<li><p>Decay sublibraries set via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_declib">set declib card</a>.</p></li>
+<li><p>Delayed fission yield sublibrary via the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_nfylib">set nfylib card</a>.</p></li>
+</ul>
+</div></blockquote>
+<p>So a minimal example assuming the without the use of environment variables would look like:</p>
+<div class="highlight-cfg notranslate"><div class="highlight"><pre><span></span><span class="na">% Cross section libraries</span><span class="w"></span>
+<span class="na">set acelib /home/user/xsdata/endfb71/endfb71.xsdata</span><span class="w"></span>
+
+<span class="na">%% SaltProc will write include card for geometry file here</span><span class="w"></span>
+
+
+<span class="na">% Sublibraries</span><span class="w"></span>
+<span class="na">set declib /home/user/xsdata/endfb71/endfb71.dec</span><span class="w"></span>
+<span class="na">set sfylib /home/user/xsdata/endfb71/endfb71.sfy</span><span class="w"></span>
+<span class="na">set nfylib /home/user/xsdata/endfb71/endfb71.nfy</span><span class="w"></span>
+
+<span class="na">% Include burnable materials</span><span class="w"></span>
+<span class="na">include /home/user/msbr_model/burnable_mats.ini</span><span class="w"></span>
+
+<span class="na">% Set neutron population</span><span class="w"></span>
+<span class="na">set pop 1000 40 10</span><span class="w"></span>
+</pre></div>
+</div>
+<p>And the material file containing burnable materials would look like:</p>
+<div class="highlight-cfg notranslate"><div class="highlight"><pre><span></span><span class="na">mat uo2 -10.0 vol 0.554 burn 1 fix 82c 900</span><span class="w"></span>
+<span class="w">    </span><span class="na">8016.82c  1.0</span><span class="w"></span>
+<span class="w">    </span><span class="na">92234.82c 0.0004</span><span class="w"></span>
+<span class="w">    </span><span class="na">92235.82c 0.043</span><span class="w"></span>
+<span class="w">    </span><span class="na">92238.82c 0.9564</span><span class="w"></span>
+<span class="w">    </span><span class="na">92236.82c 0.0002</span><span class="w"></span>
+</pre></div>
+</div>
+<p>Users looking further cutomize the depletion step should read  Serpent 2’s
+<a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual">input syntax manual</a>, in particular the <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_bumode">set bumode card</a> and the
+<a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#set_pcc">set pcc card</a>.</p>
+</section>
+<section id="openmc-template-files">
+<h2>OpenMC Template Files<a class="headerlink" href="#openmc-template-files" title="Permalink to this heading">¶</a></h2>
+<p>Any valid <code class="xref py py-class docutils literal notranslate"><span class="pre">Model</span></code> object can be exported into a set of
+template files that will work with SaltProc. See the <a class="reference external" href="https://docs.openmc.org/">OpenMC docpages</a> for more
+info.</p>
+</section>
+</section>
+
+
+           </div>
+          </div>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="processing_system.html" class="btn btn-neutral float-left" title="Creating Processing System Files" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+    <span class="fa fa-book"> Other Versions</span>
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+      <dt>Branches</dt>
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diff --git a/v0.4.0/src/index.html b/master/userguide/troubleshooting.html
similarity index 61%
rename from v0.4.0/src/index.html
rename to master/userguide/troubleshooting.html
index 0d8a12e66..1c324c63a 100644
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+++ b/master/userguide/troubleshooting.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>SaltProc API &mdash; Saltproc 0.4.0 documentation</title>
+  <title>Troubleshooting &mdash; Saltproc 0.5.dev documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
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+    <link rel="next" title="Running in Parallel" href="parallel.html" />
+    <link rel="prev" title="Executables and Scripts" href="scripts.html" /> 
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 <body class="wy-body-for-nav"> 
@@ -32,7 +32,7 @@
             <a href="../index.html" class="icon icon-home"> Saltproc
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-                0.4.0
+                0.5.dev
               </div>
 <div role="search">
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@@ -46,9 +46,22 @@
 <li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
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-<li class="toctree-l1 current"><a class="current reference internal" href="#">SaltProc API</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../releasenotes/index.html">Release Notes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../methods/index.html">Theory and Methodology</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="index.html">User’s Guide</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="beginners.html">A Beginner’s Guide to SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="basics.html">Basics of Using SaltProc</a></li>
+<li class="toctree-l2"><a class="reference internal" href="input.html">Creating a SaltProc input file</a></li>
+<li class="toctree-l2"><a class="reference internal" href="processing_system.html">Creating Processing System Files</a></li>
+<li class="toctree-l2"><a class="reference internal" href="templates.html">Template and Runtime Files</a></li>
+<li class="toctree-l2"><a class="reference internal" href="scripts.html">Executables and Scripts</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Troubleshooting</a></li>
+<li class="toctree-l2"><a class="reference internal" href="parallel.html">Running in Parallel</a></li>
+</ul>
+</li>
 <li class="toctree-l1"><a class="reference internal" href="../devguide/index.html">Developer’s Guide</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api/index.html">SaltProc API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../io_formats/index.html">File Format Specifications</a></li>
 <li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
 </ul>
 
@@ -66,9 +79,10 @@
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   <ul class="wy-breadcrumbs">
       <li><a href="../index.html" class="icon icon-home"></a></li>
-      <li class="breadcrumb-item active">SaltProc API</li>
+          <li class="breadcrumb-item"><a href="index.html">User’s Guide</a></li>
+      <li class="breadcrumb-item active">Troubleshooting</li>
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-            <a href="../_sources/src/index.rst.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/userguide/troubleshooting.rst.txt" rel="nofollow"> View page source</a>
       </li>
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   <hr/>
@@ -76,19 +90,18 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="saltproc-api">
-<h1>SaltProc API<a class="headerlink" href="#saltproc-api" title="Permalink to this heading">¶</a></h1>
-<p>This is automatically generated API documentation from SaltProc source files.</p>
-<p>Click the  “modules” (<a class="reference internal" href="../py-modindex.html"><span class="std std-ref">Module Index</span></a>) link to browse the modules.
-Or, dive right into the autogenerated <a class="reference internal" href="saltproc.html"><span class="doc">saltproc package</span></a> docs.</p>
+  <section id="troubleshooting">
+<span id="userguide-troubleshooting"></span><h1>Troubleshooting<a class="headerlink" href="#troubleshooting" title="Permalink to this heading">¶</a></h1>
+<p>Many problems users have are related to the configuration of their transport
+code. If a SaltProc simulation terminates early, this is typcially the case.</p>
 </section>
 
 
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../examples.html" class="btn btn-neutral float-left" title="Examples" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="../releasenotes/index.html" class="btn btn-neutral float-right" title="Release Notes" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="scripts.html" class="btn btn-neutral float-left" title="Executables and Scripts" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="parallel.html" class="btn btn-neutral float-right" title="Running in Parallel" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
@@ -111,18 +124,13 @@ <h1>SaltProc API<a class="headerlink" href="#saltproc-api" title="Permalink to t
 <div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
   <span class="rst-current-version" data-toggle="rst-current-version">
     <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
+    v: master
     <span class="fa fa-caret-down"></span>
   </span>
   <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../v0.3.0/src/index.html">v0.3.0</a></dd>
-      <dd><a href="index.html">v0.4.0</a></dd>
-    </dl>
     <dl>
       <dt>Branches</dt>
-      <dd><a href="../../master/src/index.html">master</a></dd>
+      <dd><a href="troubleshooting.html">master</a></dd>
     </dl>
   </div>
 </div><script>
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deleted file mode 100644
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+++ /dev/null
@@ -1,133 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; Saltproc  documentation</title>
-      <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
-  <!--[if lt IE 9]>
-    <script src="../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-        <script src="../_static/jquery.js"></script>
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-    <link rel="index" title="Index" href="../genindex.html" />
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-</head>
-
-<body class="wy-body-for-nav"> 
-  <div class="wy-grid-for-nav">
-    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
-      <div class="wy-side-scroll">
-        <div class="wy-side-nav-search" >
-            <a href="../index.html" class="icon icon-home"> Saltproc
-          </a>
-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
-    <input type="hidden" name="check_keywords" value="yes" />
-    <input type="hidden" name="area" value="default" />
-  </form>
-</div>
-        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <ul>
-<li class="toctree-l1"><a class="reference internal" href="../overview.html">Overview</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../src/index.html">SaltProc API</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
-</ul>
-
-        </div>
-      </div>
-    </nav>
-
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
-          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
-          <a href="../index.html">Saltproc</a>
-      </nav>
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-        <div class="rst-content">
-          <div role="navigation" aria-label="Page navigation">
-  <ul class="wy-breadcrumbs">
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-      <li class="breadcrumb-item active">Overview: module code</li>
-      <li class="wy-breadcrumbs-aside">
-      </li>
-  </ul>
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-             
-  <h1>All modules for which code is available</h1>
-<ul><li><a href="saltproc/app.html">saltproc.app</a></li>
-<li><a href="saltproc/depcode.html">saltproc.depcode</a></li>
-<li><a href="saltproc/materialflow.html">saltproc.materialflow</a></li>
-<li><a href="saltproc/process.html">saltproc.process</a></li>
-<li><a href="saltproc/reactor.html">saltproc.reactor</a></li>
-<li><a href="saltproc/separator.html">saltproc.separator</a></li>
-<li><a href="saltproc/simulation.html">saltproc.simulation</a></li>
-<li><a href="saltproc/sparger.html">saltproc.sparger</a></li>
-<li><a href="saltproc/tests/test_app.html">saltproc.tests.test_app</a></li>
-<li><a href="saltproc/tests/test_depcode.html">saltproc.tests.test_depcode</a></li>
-<li><a href="saltproc/tests/test_materialflow.html">saltproc.tests.test_materialflow</a></li>
-<li><a href="saltproc/tests/test_process.html">saltproc.tests.test_process</a></li>
-<li><a href="saltproc/tests/test_separator.html">saltproc.tests.test_separator</a></li>
-<li><a href="saltproc/tests/test_simulation.html">saltproc.tests.test_simulation</a></li>
-<li><a href="saltproc/tests/test_sparger.html">saltproc.tests.test_sparger</a></li>
-</ul>
-
-           </div>
-          </div>
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-    v: v0.3.0
-    <span class="fa fa-caret-down"></span>
-  </span>
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-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="index.html">v0.3.0</a></dd>
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-    </dl>
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-      <dt>Branches</dt>
-      <dd><a href="../../master/index.html">master</a></dd>
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diff --git a/v0.3.0/_modules/saltproc/app.html b/v0.3.0/_modules/saltproc/app.html
deleted file mode 100644
index 72b6ac862..000000000
--- a/v0.3.0/_modules/saltproc/app.html
+++ /dev/null
@@ -1,590 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.app &mdash; Saltproc  documentation</title>
-      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
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-    <link rel="index" title="Index" href="../../genindex.html" />
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-</head>
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-<body class="wy-body-for-nav"> 
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-          </a>
-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
-    <input type="hidden" name="check_keywords" value="yes" />
-    <input type="hidden" name="area" value="default" />
-  </form>
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-<li class="toctree-l1"><a class="reference internal" href="../../overview.html">Overview</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../src/index.html">SaltProc API</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
-</ul>
-
-        </div>
-      </div>
-    </nav>
-
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
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-          <a href="../../index.html">Saltproc</a>
-      </nav>
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-      <div class="wy-nav-content">
-        <div class="rst-content">
-          <div role="navigation" aria-label="Page navigation">
-  <ul class="wy-breadcrumbs">
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-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">saltproc.app</li>
-      <li class="wy-breadcrumbs-aside">
-      </li>
-  </ul>
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Simulation</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Reactor</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Sparger</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Separator</span>
-<span class="c1"># from depcode import Depcode</span>
-<span class="c1"># from simulation import Simulation</span>
-<span class="c1"># from materialflow import Materialflow</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">copy</span>
-<span class="kn">import</span> <span class="nn">json</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
-<span class="kn">import</span> <span class="nn">gc</span>
-<span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
-<span class="kn">import</span> <span class="nn">pydotplus</span>
-<span class="kn">import</span> <span class="nn">argparse</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<span class="n">input_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span>
-
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">input_path</span><span class="p">,</span> <span class="s1">&#39;data/saltproc_serpent&#39;</span><span class="p">)</span>
-<span class="n">iter_matfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">input_path</span><span class="p">,</span> <span class="s1">&#39;data/saltproc_mat&#39;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="check_restart"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.check_restart">[docs]</a><span class="k">def</span> <span class="nf">check_restart</span><span class="p">(</span><span class="n">restart_flag</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;If the user set `Restart simulation from the step when it stopped?`</span>
-<span class="sd">    for `False` clean out iteration files and database from previous run.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    restart_flag : bool</span>
-<span class="sd">        Is the current simulation restarted?</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">restart_flag</span><span class="p">:</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">iter_matfile</span><span class="p">)</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">input_file</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Previous run output files were deleted.&quot;</span><span class="p">)</span>
-        <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
-            <span class="k">pass</span></div>
-
-
-<div class="viewcode-block" id="parse_arguments"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.parse_arguments">[docs]</a><span class="k">def</span> <span class="nf">parse_arguments</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses arguments from command line.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    --------</span>
-<span class="sd">    n: int</span>
-<span class="sd">        Number of nodes for use in Serpent simulation.</span>
-<span class="sd">    d: int</span>
-<span class="sd">        Number of cores for use in Serpent simulation.</span>
-<span class="sd">    i: str</span>
-<span class="sd">        Path and name of main SaltProc input file (json format).</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">parser</span> <span class="o">=</span> <span class="n">argparse</span><span class="o">.</span><span class="n">ArgumentParser</span><span class="p">()</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-n&#39;</span><span class="p">,</span>      <span class="c1"># Number of nodes to use</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;number of cluster nodes to use in Serpent&#39;</span><span class="p">)</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-d&#39;</span><span class="p">,</span>      <span class="c1"># Number of nodes to use</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;number of threads to use in Serpent&#39;</span><span class="p">)</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-i&#39;</span><span class="p">,</span>      <span class="c1"># main input file</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">str</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;path and name of SaltProc main input file&#39;</span><span class="p">)</span>
-    <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span>
-    <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">n</span><span class="p">),</span> <span class="nb">int</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">d</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">i</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="read_main_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_main_input">[docs]</a><span class="k">def</span> <span class="nf">read_main_input</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reads main SaltProc input file (json format).</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------</span>
-<span class="sd">    main_inp_file : str</span>
-<span class="sd">        Path to SaltProc main input file and name of this file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="k">global</span> <span class="n">exec_path</span><span class="p">,</span> <span class="n">spc_inp_file</span><span class="p">,</span> <span class="n">dot_inp_file</span><span class="p">,</span> <span class="n">template_file</span><span class="p">,</span> <span class="n">db_file</span>
-        <span class="n">exec_path</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Path to Serpent executable&quot;</span><span class="p">]</span>
-        <span class="n">spc_inp_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;File containing processing system objects&quot;</span><span class="p">])</span>
-        <span class="n">dot_inp_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Graph file containing processing system structure&quot;</span><span class="p">])</span>
-        <span class="n">template_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;User&#39;s Serpent input file with reactor model&quot;</span><span class="p">])</span>
-        <span class="n">db_path</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Path output data storing folder&quot;</span><span class="p">]</span>
-        <span class="n">db_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">db_path</span><span class="p">,</span>
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Output HDF5 database file name&quot;</span><span class="p">])</span>
-        <span class="c1"># Read Monte Carlo setups</span>
-        <span class="k">global</span> <span class="n">neutron_pop</span><span class="p">,</span> <span class="n">active_cycles</span><span class="p">,</span> <span class="n">inactive_cycles</span>
-        <span class="n">neutron_pop</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Number of neutrons per generation&quot;</span><span class="p">]</span>
-        <span class="n">active_cycles</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Number of active generations&quot;</span><span class="p">]</span>
-        <span class="n">inactive_cycles</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Number of inactive generations&quot;</span><span class="p">]</span>
-        <span class="c1"># Read advanced simulatiion parameters</span>
-        <span class="k">global</span> <span class="n">adjust_geo</span><span class="p">,</span> <span class="n">restart_flag</span><span class="p">,</span> <span class="n">core_massflow_rate</span>
-        <span class="n">adjust_geo</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Switch to another geometry when keff drops below 1?&quot;</span><span class="p">]</span>
-        <span class="n">restart_flag</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Restart simulation from the step when it stopped?&quot;</span><span class="p">]</span>
-        <span class="c1"># Read paths to geometry files</span>
-        <span class="k">global</span> <span class="n">geo_file</span>
-        <span class="k">if</span> <span class="n">adjust_geo</span><span class="p">:</span>
-            <span class="n">geo_list</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Geometry file/files to use in Serpent runs&quot;</span><span class="p">]</span>
-            <span class="n">geo_file</span> <span class="o">=</span> <span class="p">[</span><span class="n">g</span> <span class="k">for</span> <span class="n">g</span> <span class="ow">in</span> <span class="n">geo_list</span><span class="p">]</span>
-        <span class="k">elif</span> <span class="ow">not</span> <span class="n">adjust_geo</span><span class="p">:</span>
-            <span class="n">geo_file</span> <span class="o">=</span> <span class="p">[</span><span class="n">j</span><span class="p">[</span><span class="s2">&quot;Geometry file/files to use in Serpent runs&quot;</span><span class="p">]]</span>
-        <span class="n">core_massflow_rate</span> <span class="o">=</span> \
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Salt mass flow rate throughout reactor core (g/s)&quot;</span><span class="p">]</span>
-        <span class="k">global</span> <span class="n">depl_hist</span><span class="p">,</span> <span class="n">power_hist</span>
-        <span class="n">depl_hist</span> <span class="o">=</span> \
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Depletion step interval or Cumulative time (end of step) (d)&quot;</span><span class="p">]</span>
-        <span class="n">power_hist</span> <span class="o">=</span> \
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Reactor power or power step list during depletion step (W)&quot;</span><span class="p">]</span>
-        <span class="n">depsteps</span> <span class="o">=</span> \
-            <span class="n">j</span><span class="p">[</span><span class="s2">&quot;Number of steps for constant power and depletion interval case&quot;</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">depsteps</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">,</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="n">depsteps</span> <span class="o">&lt;</span> <span class="mf">0.0</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">int</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Depletion step interval cannot be negative&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">step</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">depsteps</span><span class="p">)</span>
-                <span class="n">deptot</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">)</span> <span class="o">*</span> <span class="n">step</span>
-                <span class="n">depl_hist</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">),</span> <span class="n">deptot</span><span class="p">,</span> <span class="n">num</span><span class="o">=</span><span class="n">step</span><span class="p">)</span>
-                <span class="n">power_hist</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">power_hist</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">ones_like</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">depsteps</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">,</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">power_hist</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
-                    <span class="s1">&#39;Depletion step list and power list shape mismatch&#39;</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="read_processes_from_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_processes_from_input">[docs]</a><span class="k">def</span> <span class="nf">read_processes_from_input</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses ``removal`` data from `.json` file with `Process` objects</span>
-<span class="sd">    description. Then returns dictionary of `Process` objects describing</span>
-<span class="sd">    extraction process efficiency for each target chemical element.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    mats : dict of str to Process</span>
-<span class="sd">        Dictionary that contains `Process` objects.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Process` object holding extraction process parameters.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">processes</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">spc_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">mat</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">j</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">obj_name</span><span class="p">,</span> <span class="n">obj_data</span> <span class="ow">in</span> <span class="n">j</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="s1">&#39;extraction_processes&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Processs object data: &quot;</span><span class="p">,</span> <span class="n">obj_data</span><span class="p">)</span>
-                <span class="n">st</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;efficiency&#39;</span><span class="p">]</span>
-                <span class="k">if</span> <span class="n">obj_name</span> <span class="o">==</span> <span class="s1">&#39;sparger&#39;</span> <span class="ow">and</span> <span class="n">st</span> <span class="o">==</span> <span class="s2">&quot;self&quot;</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Sparger</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-                <span class="k">elif</span> <span class="n">obj_name</span> <span class="o">==</span> <span class="s1">&#39;entrainment_separator&#39;</span> <span class="ow">and</span> <span class="n">st</span> <span class="o">==</span> <span class="s2">&quot;self&quot;</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Separator</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Process</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-
-        <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">processes</span></div>
-
-
-<div class="viewcode-block" id="read_feeds_from_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_feeds_from_input">[docs]</a><span class="k">def</span> <span class="nf">read_feeds_from_input</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses ``feed`` data from `.json` file with `Materialflow` objects</span>
-<span class="sd">    description. Then returns dictionary of `Materialflow` objects describing</span>
-<span class="sd">    fresh fuel feeds.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    mats : dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects with feeds.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object holding composition and properties of feed.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">spc_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="c1"># print(j[&#39;feeds&#39;])</span>
-        <span class="k">for</span> <span class="n">mat</span><span class="p">,</span> <span class="n">val</span> <span class="ow">in</span> <span class="n">j</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">obj_name</span><span class="p">,</span> <span class="n">obj_data</span> <span class="ow">in</span> <span class="n">j</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="s1">&#39;feeds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># print(obj_data)</span>
-                <span class="n">nucvec</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;comp&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;mass&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;density&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;volume&#39;</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">feeds</span></div>
-
-
-<div class="viewcode-block" id="read_dot"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_dot">[docs]</a><span class="k">def</span> <span class="nf">read_dot</span><span class="p">(</span><span class="n">dot_file</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reads directed graph that describes fuel reprocessing system structure</span>
-<span class="sd">    from `*.dot` file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    dot_file : str</span>
-<span class="sd">        Path to `.dot` file with reprocessing system structure.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    --------</span>
-<span class="sd">    mat_name : str</span>
-<span class="sd">        Name of burnable material which reprocessing scheme described in `.dot`</span>
-<span class="sd">        file.</span>
-<span class="sd">    paths_list : list</span>
-<span class="sd">        List of lists containing all possible paths between `core_outlet` and</span>
-<span class="sd">        `core_inlet`.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">graph_pydot</span> <span class="o">=</span> <span class="n">pydotplus</span><span class="o">.</span><span class="n">graph_from_dot_file</span><span class="p">(</span><span class="n">dot_file</span><span class="p">)</span>
-    <span class="n">digraph</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">drawing</span><span class="o">.</span><span class="n">nx_pydot</span><span class="o">.</span><span class="n">from_pydot</span><span class="p">(</span><span class="n">graph_pydot</span><span class="p">)</span>
-    <span class="n">mat_name</span> <span class="o">=</span> <span class="n">digraph</span><span class="o">.</span><span class="n">name</span>
-    <span class="c1"># iterate over all possible paths between &#39;core_outlet&#39; and &#39;core_inlet&#39;</span>
-    <span class="n">paths_list</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">all_simple_paths</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">all_simple_paths</span><span class="p">(</span><span class="n">digraph</span><span class="p">,</span>
-                                           <span class="n">source</span><span class="o">=</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">,</span>
-                                           <span class="n">target</span><span class="o">=</span><span class="s1">&#39;core_inlet&#39;</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">all_simple_paths</span><span class="p">:</span>
-        <span class="n">paths_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">mat_name</span><span class="p">,</span> <span class="n">paths_list</span></div>
-
-
-<div class="viewcode-block" id="reprocessing"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.reprocessing">[docs]</a><span class="k">def</span> <span class="nf">reprocessing</span><span class="p">(</span><span class="n">mat</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Applies reprocessing scheme to burnable materials.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------</span>
-<span class="sd">    mats : dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects with burnable material</span>
-<span class="sd">        data right after irradiation in the core.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    --------</span>
-<span class="sd">    waste : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Process name.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object containing waste streams data.</span>
-<span class="sd">    extracted_mass: dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Mass removed as waste in reprocessing function for each material</span>
-<span class="sd">            (g).</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">inmass</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">extracted_mass</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="n">forked_mat</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="n">prcs</span> <span class="o">=</span> <span class="n">read_processes_from_input</span><span class="p">()</span>
-    <span class="n">mat_name_dot</span><span class="p">,</span> <span class="n">paths</span> <span class="o">=</span> <span class="n">read_dot</span><span class="p">(</span><span class="n">dot_inp_file</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">mname</span> <span class="ow">in</span> <span class="n">prcs</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-        <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Material mass before reprocessing </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">])</span>
-        <span class="k">if</span> <span class="n">mname</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span> <span class="ow">and</span> <span class="n">mat_name_dot</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span><span class="p">:</span>
-            <span class="n">w</span> <span class="o">=</span> <span class="s1">&#39;waste_&#39;</span>
-            <span class="n">ctr</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">paths</span><span class="p">:</span>
-                <span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]))</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Material mass </span><span class="si">%f</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">path</span><span class="p">:</span>
-                    <span class="c1"># Calculate fraction of the flow going to the process p</span>
-                    <span class="n">divisor</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">p</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">/</span>
-                                    <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Process </span><span class="si">%s</span><span class="s1">, divisor=</span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">divisor</span><span class="p">))</span>
-                    <span class="c1"># Update materialflow byt multiplying it by flow fraction</span>
-                    <span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">]</span> <span class="o">=</span> \
-                        <span class="n">divisor</span> <span class="o">*</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">])</span>
-                    <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">w</span> <span class="o">+</span> <span class="n">p</span><span class="p">]</span> <span class="o">=</span> \
-                        <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">p</span><span class="p">]</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">])</span>
-                <span class="n">ctr</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="c1"># Sum all forked material objects together</span>
-            <span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>  <span class="c1"># initilize correct obj instance</span>
-            <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">])):</span>
-                <span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">+=</span> <span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">idx</span><span class="p">]</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;1 Forked material mass </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;2 Forked material mass </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">forked_mat</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass balance </span><span class="si">%f</span><span class="s1"> g = </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">],</span>
-                   <span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_bypass&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-        <span class="c1"># Bootstrap for many materials</span>
-        <span class="k">if</span> <span class="n">mname</span> <span class="o">==</span> <span class="s1">&#39;ctrlPois&#39;</span><span class="p">:</span>
-            <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span> <span class="o">=</span> \
-                <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">])</span>
-        <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">-</span> <span class="nb">float</span><span class="p">(</span><span class="n">mat</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-    <span class="k">del</span> <span class="n">prcs</span><span class="p">,</span> <span class="n">inmass</span><span class="p">,</span> <span class="n">mname</span><span class="p">,</span> <span class="n">forked_mat</span><span class="p">,</span> <span class="n">mat_name_dot</span><span class="p">,</span> <span class="n">paths</span><span class="p">,</span> <span class="n">divisor</span>
-    <span class="k">return</span> <span class="n">waste</span><span class="p">,</span> <span class="n">extracted_mass</span></div>
-
-
-<div class="viewcode-block" id="refill"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.refill">[docs]</a><span class="k">def</span> <span class="nf">refill</span><span class="p">(</span><span class="n">mat</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Makes up material loss in removal processes by adding fresh fuel.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------</span>
-<span class="sd">    mat : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object after performing all removals.</span>
-<span class="sd">    extracted_mass: dict of str to float</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Mass removed as waste in reprocessing function for each material.</span>
-<span class="sd">    waste : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Process name.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object containing waste streams data.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    --------</span>
-<span class="sd">    refilled_mats: dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object after adding fresh fuel.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel before refill ^^^&#39;</span><span class="p">,</span> <span class="n">mat</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">read_feeds_from_input</span><span class="p">()</span>
-    <span class="n">refill_mat</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">for</span> <span class="n">mn</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">feeds</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-        <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">feed_n</span><span class="p">,</span> <span class="n">fval</span> <span class="ow">in</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>  <span class="c1"># works with one feed only</span>
-            <span class="n">scale</span> <span class="o">=</span> <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">/</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">feed_n</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span>
-            <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">=</span> <span class="n">scale</span> <span class="o">*</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">feed_n</span><span class="p">]</span>
-            <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="s1">&#39;feed_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">feed_n</span><span class="p">)]</span> <span class="o">=</span> <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span>
-        <span class="n">mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">+=</span> <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refilled fresh material </span><span class="si">%s</span><span class="s1"> </span><span class="si">%f</span><span class="s1"> g&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">mn</span><span class="p">,</span> <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refill Material ^^^&#39;</span><span class="p">,</span> <span class="n">refill_mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel after refill ^^^&#39;</span><span class="p">,</span> <span class="n">mat</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-    <span class="k">return</span> <span class="n">waste_dict</span></div>
-
-
-<div class="viewcode-block" id="run"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot; Inititializes main run.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="c1"># Parse arguments from command-lines</span>
-    <span class="n">nodes</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">sp_input</span> <span class="o">=</span> <span class="n">parse_arguments</span><span class="p">()</span>
-    <span class="c1"># Read main input file</span>
-    <span class="n">read_main_input</span><span class="p">(</span><span class="n">sp_input</span><span class="p">)</span>
-    <span class="c1"># Print out input information</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Initiating Saltproc:</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Restart = &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">restart_flag</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Template File Path  = &#39;</span> <span class="o">+</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">template_file</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Input File Path     = &#39;</span> <span class="o">+</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">input_file</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Material File Path  = &#39;</span> <span class="o">+</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">iter_matfile</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Output HDF5 DB Path = &#39;</span> <span class="o">+</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="p">)</span>
-    <span class="c1"># Intializing objects</span>
-    <span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-        <span class="n">exec_path</span><span class="o">=</span><span class="n">exec_path</span><span class="p">,</span>
-        <span class="n">template_path</span><span class="o">=</span><span class="n">template_file</span><span class="p">,</span>
-        <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-        <span class="n">iter_matfile</span><span class="o">=</span><span class="n">iter_matfile</span><span class="p">,</span>
-        <span class="n">geo_file</span><span class="o">=</span><span class="n">geo_file</span><span class="p">,</span>
-        <span class="n">npop</span><span class="o">=</span><span class="n">neutron_pop</span><span class="p">,</span>
-        <span class="n">active_cycles</span><span class="o">=</span><span class="n">active_cycles</span><span class="p">,</span>
-        <span class="n">inactive_cycles</span><span class="o">=</span><span class="n">inactive_cycles</span><span class="p">)</span>
-    <span class="n">simulation</span> <span class="o">=</span> <span class="n">Simulation</span><span class="p">(</span>
-        <span class="n">sim_name</span><span class="o">=</span><span class="s1">&#39;Super test&#39;</span><span class="p">,</span>
-        <span class="n">sim_depcode</span><span class="o">=</span><span class="n">serpent</span><span class="p">,</span>
-        <span class="n">core_number</span><span class="o">=</span><span class="n">cores</span><span class="p">,</span>
-        <span class="n">node_number</span><span class="o">=</span><span class="n">nodes</span><span class="p">,</span>
-        <span class="n">h5_file</span><span class="o">=</span><span class="n">db_file</span><span class="p">,</span>
-        <span class="n">iter_matfile</span><span class="o">=</span><span class="n">iter_matfile</span><span class="p">)</span>
-    <span class="n">msr</span> <span class="o">=</span> <span class="n">Reactor</span><span class="p">(</span>
-        <span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-        <span class="n">mass_flowrate</span><span class="o">=</span><span class="n">core_massflow_rate</span><span class="p">,</span>
-        <span class="n">power_levels</span><span class="o">=</span><span class="n">power_hist</span><span class="p">,</span>
-        <span class="n">depl_hist</span><span class="o">=</span><span class="n">depl_hist</span><span class="p">)</span>
-    <span class="c1"># Check: Restarting previous simulation or starting new?</span>
-    <span class="n">check_restart</span><span class="p">(</span><span class="n">restart_flag</span><span class="p">)</span>
-    <span class="c1"># Run sequence</span>
-    <span class="c1"># Start sequence</span>
-    <span class="k">for</span> <span class="n">dts</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">depl_hist</span><span class="p">)):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n\n\n</span><span class="s2">Step #</span><span class="si">%i</span><span class="s2"> has been started&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">dts</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">write_depcode_input</span><span class="p">(</span><span class="n">template_file</span><span class="p">,</span>
-                                    <span class="n">input_file</span><span class="p">,</span>
-                                    <span class="n">msr</span><span class="p">,</span>
-                                    <span class="n">dts</span><span class="p">,</span>
-                                    <span class="n">restart_flag</span><span class="p">)</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">run_depcode</span><span class="p">(</span><span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">dts</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">restart_flag</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>  <span class="c1"># First step</span>
-            <span class="c1"># Read general simulation data which never changes</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_init_info</span><span class="p">()</span>
-            <span class="c1"># Parse and store data for initial state (beginning of dts)</span>
-            <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dts</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="s1">&#39;before_reproc&#39;</span><span class="p">)</span>
-        <span class="c1"># Finish of First step</span>
-        <span class="c1"># Main sequence</span>
-        <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dts</span><span class="p">,</span> <span class="s1">&#39;before_reproc&#39;</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_step_info</span><span class="p">()</span>
-        <span class="c1"># Reprocessing here</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel before reproc </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois before reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after reproc </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_feed_st</span> <span class="o">=</span> <span class="n">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after REFILL </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after REFILL %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Removed mass [g]:&quot;</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">)</span>
-        <span class="c1"># Store in DB after reprocessing and refill (right before next depl)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_after_repr</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">waste_feed_st</span><span class="p">,</span> <span class="n">dts</span><span class="p">)</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">write_mat_file</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">iter_matfile</span><span class="p">,</span> <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
-        <span class="k">del</span> <span class="n">mats</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">,</span> <span class="n">waste_feed_st</span><span class="p">,</span> <span class="n">rem_mass</span>
-        <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-        <span class="c1"># Switch to another geometry?</span>
-        <span class="k">if</span> <span class="n">adjust_geo</span> <span class="ow">and</span> <span class="n">simulation</span><span class="o">.</span><span class="n">read_k_eds_delta</span><span class="p">(</span><span class="n">dts</span><span class="p">,</span> <span class="n">restart_flag</span><span class="p">):</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">switch_to_next_geometry</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Time at the end of current depletion step </span><span class="si">%f</span><span class="s2">d&quot;</span> <span class="o">%</span>
-              <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Simulation succeeded.</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
-        <span class="sd">&#39;&#39;&#39;print(&quot;Reactor object data.\n&quot;,</span>
-<span class="sd">              msr.mass_flowrate,</span>
-<span class="sd">              msr.power_levels,</span>
-<span class="sd">              msr.depl_hist)&#39;&#39;&#39;</span></div>
-</pre></div>
-
-           </div>
-          </div>
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-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.3.0
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
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diff --git a/v0.3.0/_modules/saltproc/depcode.html b/v0.3.0/_modules/saltproc/depcode.html
deleted file mode 100644
index 8d11f82c6..000000000
--- a/v0.3.0/_modules/saltproc/depcode.html
+++ /dev/null
@@ -1,808 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.depcode &mdash; Saltproc  documentation</title>
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-  <h1>Source code for saltproc.depcode</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">serpent</span>
-<span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
-
-
-<div class="viewcode-block" id="Depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode">[docs]</a><span class="k">class</span> <span class="nc">Depcode</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&quot;&quot;&quot;Abstract class for interfacing with monte-carlo particle transport</span>
-<span class="sd">    codes. Contains information about input, output, geometry, and template</span>
-<span class="sd">    files for running depletion simulations. Also contains neutron</span>
-<span class="sd">    population, active, and inactive cycles. Contains methods to read template</span>
-<span class="sd">    and output files, and write new input files for the depletion code.</span>
-
-<span class="sd">   &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Depcode.__init__"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">codename</span><span class="p">,</span>
-                 <span class="n">exec_path</span><span class="p">,</span>
-                 <span class="n">template_path</span><span class="p">,</span>
-                 <span class="n">input_path</span><span class="p">,</span>
-                 <span class="n">iter_matfile</span><span class="p">,</span>
-                 <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                 <span class="n">npop</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
-                 <span class="n">active_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">,</span>
-                 <span class="n">inactive_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the Depcode object.</span>
-
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           codename : str</span>
-<span class="sd">               Name of depletion code.</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to depletion code executable.</span>
-<span class="sd">           template_path : str</span>
-<span class="sd">               Path to user input file for depletion code.</span>
-<span class="sd">           input_path : str</span>
-<span class="sd">               Name of input file for depletion code rerunning.</span>
-<span class="sd">           iter_matfile : str</span>
-<span class="sd">               Name of iterative, rewritable material file for depletion code</span>
-<span class="sd">               rerunning. This file is modified during  the simulation.</span>
-<span class="sd">           geo_file : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">           npop : int, optional</span>
-<span class="sd">               Size of neutron population per cycle for Monte Carlo.</span>
-<span class="sd">           active_cycles : int, optional</span>
-<span class="sd">               Number of active cycles.</span>
-<span class="sd">           inactive_cycles : int, optional</span>
-<span class="sd">               Number of inactive cycles.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">codename</span> <span class="o">=</span> <span class="n">codename</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span> <span class="o">=</span> <span class="n">exec_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">template_path</span> <span class="o">=</span> <span class="n">template_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">input_path</span> <span class="o">=</span> <span class="n">input_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">=</span> <span class="n">iter_matfile</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">geo_file</span> <span class="o">=</span> <span class="n">geo_file</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="n">npop</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="n">active_cycles</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="n">inactive_cycles</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span> <span class="o">=</span> <span class="p">{}</span></div>
-
-<div class="viewcode-block" id="Depcode.read_dep_comp"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_dep_comp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dep_file</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the depleted material data from the depcode simulation</span>
-<span class="sd">        and returns a dictionary with a `Materialflow` object for each</span>
-<span class="sd">        burnable material.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dep_file : str</span>
-<span class="sd">            Path to file containing results of depletion simulation</span>
-<span class="sd">        read_at_end : bool, optional</span>
-<span class="sd">            Controls at which moment in the depletion step to read the data.</span>
-<span class="sd">            If `True`, the function reads data at the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.run_depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">run_depcode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Runs depletion code as a subprocess with the given parameters.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cores : int</span>
-<span class="sd">            Number of cores to use for depletion code run.</span>
-<span class="sd">        nodes : int</span>
-<span class="sd">            Number of nodes to use for depletion code run.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.write_depcode_input"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.write_depcode_input">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">write_depcode_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">temp</span><span class="p">,</span> <span class="n">inp</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Writes prepared data into depletion code input file(s).</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        temp : str</span>
-<span class="sd">            Path to depletion code template file</span>
-<span class="sd">        inp : str</span>
-<span class="sd">            Path to input file for depletion code rerunning</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.write_mat_file"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">write_mat_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dep_dict</span><span class="p">,</span> <span class="n">mat_file</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes the iteration input file containing the burnable materials</span>
-<span class="sd">        composition used in depletion runs and updated after each depletion</span>
-<span class="sd">        step.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dep_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        mat_file : str</span>
-<span class="sd">            Path to file containing burnable materials composition.</span>
-<span class="sd">        dep_end_time : float</span>
-<span class="sd">            Current time at the end of the depletion step (d).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div></div>
-
-
-<div class="viewcode-block" id="DepcodeSerpent"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent">[docs]</a><span class="k">class</span> <span class="nc">DepcodeSerpent</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&quot;&quot;&quot;Class contains information about input, output, geometry, and</span>
-<span class="sd">    template files for running Serpent2 depletion simulations.</span>
-<span class="sd">    Also contains neutrons population, active, and inactive cycles.</span>
-<span class="sd">    Contains methods to read template and output files,</span>
-<span class="sd">    write new input files for Serpent2.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="DepcodeSerpent.__init__"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">exec_path</span><span class="o">=</span><span class="s2">&quot;sss2&quot;</span><span class="p">,</span>
-                 <span class="n">template_path</span><span class="o">=</span><span class="s2">&quot;reactor.serpent&quot;</span><span class="p">,</span>
-                 <span class="n">input_path</span><span class="o">=</span><span class="s2">&quot;data/saltproc_reactor&quot;</span><span class="p">,</span>
-                 <span class="n">iter_matfile</span><span class="o">=</span><span class="s2">&quot;data/saltproc_mat&quot;</span><span class="p">,</span>
-                 <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                 <span class="n">npop</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
-                 <span class="n">active_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">,</span>
-                 <span class="n">inactive_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the DepcodeSerpent object.</span>
-
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to Serpent2 executable.</span>
-<span class="sd">           template_path : str</span>
-<span class="sd">               Path to user input file for Serpent2.</span>
-<span class="sd">           input_path : str</span>
-<span class="sd">               Name of input file for Serpent2 rerunning.</span>
-<span class="sd">           iter_matfile : str</span>
-<span class="sd">               Name of iterative, rewritable material file for Serpent2</span>
-<span class="sd">               rerunning. This file is modified during  the simulation.</span>
-<span class="sd">           geo_file : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">           npop : int, optional</span>
-<span class="sd">               Size of neutron population per cycle for Monte Carlo.</span>
-<span class="sd">           active_cycles : int, optional</span>
-<span class="sd">               Number of active cycles.</span>
-<span class="sd">           inactive_cycles : int, optional</span>
-<span class="sd">               Number of inactive cycles.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="s2">&quot;serpent&quot;</span><span class="p">,</span>
-                         <span class="n">exec_path</span><span class="p">,</span>
-                         <span class="n">template_path</span><span class="p">,</span>
-                         <span class="n">input_path</span><span class="p">,</span>
-                         <span class="n">iter_matfile</span><span class="p">,</span>
-                         <span class="n">geo_file</span><span class="p">,</span>
-                         <span class="n">npop</span><span class="p">,</span>
-                         <span class="n">active_cycles</span><span class="p">,</span>
-                         <span class="n">inactive_cycles</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.change_sim_par"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par">[docs]</a>    <span class="k">def</span> <span class="nf">change_sim_par</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Finds simulation parameters (neutron population, cycles) in the</span>
-<span class="sd">        Serpent2 template file and change them to the parameters from the</span>
-<span class="sd">        SaltProc input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s Serpent2 template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        input_data : list</span>
-<span class="sd">            List of strings containing Serpent2 input file with new</span>
-<span class="sd">            simulation parameters.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">:</span>
-            <span class="n">sim_param</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span> <span class="k">if</span> <span class="n">s</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;set pop&quot;</span><span class="p">)]</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sim_param</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> contains multiple lines with &#39;</span>
-                      <span class="s1">&#39;simulation parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
-                      <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">),</span> <span class="n">sim_param</span><span class="p">)</span>
-                <span class="k">return</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">sim_param</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> does not contain line with &#39;</span>
-                      <span class="s1">&#39;simulation parameters.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">))</span>
-                <span class="k">return</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="s1">&#39;set pop </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-                                           <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">)</span>
-        <span class="k">return</span> <span class="p">[</span><span class="n">s</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">sim_param</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">args</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.create_iter_matfile"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile">[docs]</a>    <span class="k">def</span> <span class="nf">create_iter_matfile</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Finds ``include`` line with path to material file, copies content of</span>
-<span class="sd">        this file to iteration material file, changes path in ``include`` line</span>
-<span class="sd">        to newly created iteration material file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        input_data : list</span>
-<span class="sd">            List of strings containing modified user template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">data_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-        <span class="n">include_str</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span> <span class="k">if</span> <span class="n">s</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;include &quot;</span><span class="p">)]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">include_str</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> has no &lt;include &quot;material_file&quot;&gt;&#39;</span>
-                  <span class="s1">&#39; statements &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">))</span>
-            <span class="k">return</span>
-        <span class="n">src_file</span> <span class="o">=</span> <span class="n">include_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isabs</span><span class="p">(</span><span class="n">src_file</span><span class="p">):</span>
-            <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normpath</span><span class="p">(</span><span class="n">data_dir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">src_file</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="n">src_file</span>
-            <span class="k">if</span> <span class="s1">&#39;mat &#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="nb">open</span><span class="p">(</span><span class="n">abs_src_matfile</span><span class="p">)</span><span class="o">.</span><span class="n">read</span><span class="p">():</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> has not include file with&#39;</span>
-                      <span class="s1">&#39; materials description or &lt;include &quot;material_file&quot;&gt;&#39;</span>
-                      <span class="s1">&#39; statement is not appears&#39;</span>
-                      <span class="s1">&#39; as first &lt;include&gt; statement</span><span class="se">\n</span><span class="s1">&#39;</span>
-                      <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">))</span>
-                <span class="k">return</span>
-        <span class="c1"># Create data directory</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">))</span>
-        <span class="k">except</span> <span class="ne">FileExistsError</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="c1"># Create file with path for SaltProc rewritable iterative material file</span>
-        <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">abs_src_matfile</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-        <span class="k">return</span> <span class="p">[</span><span class="n">s</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">src_file</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.get_nuc_name"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name">[docs]</a>    <span class="k">def</span> <span class="nf">get_nuc_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns nuclide name in human-readable notation: chemical symbol</span>
-<span class="sd">        (one or two characters), dash, and the atomic weight. Lastly, if the</span>
-<span class="sd">        nuclide is in metastable state, the letter `m` is concatenated with</span>
-<span class="sd">        number of excited state. For example, `Am-242m1`.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        nuc_code : str</span>
-<span class="sd">            Name of nuclide in Serpent2 form. For instance, `Am-242m`.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuc_name : str</span>
-<span class="sd">            Name of nuclide in human-readable notation (`Am-242m1`).</span>
-<span class="sd">        nuc_zzaaam : str</span>
-<span class="sd">            Name of nuclide in `zzaaam` form (`952421`).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">):</span>
-            <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzzaaa_to_id</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]))</span>
-            <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span>
-            <span class="c1"># at_mass = pydata.atomic_mass(nuc_code_id)</span>
-            <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                    <span class="n">aa</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                    <span class="n">aa</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span>
-                <span class="n">nuc_zzaaam</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">zz</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;1&#39;</span>
-            <span class="k">elif</span> <span class="n">aa</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">aa_str</span> <span class="o">=</span> <span class="s1">&#39;nat&#39;</span>
-            <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zz_name</span><span class="p">[</span><span class="n">zz</span><span class="p">]</span> <span class="o">+</span> <span class="n">aa_str</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">meta_flag</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">snum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">meta_flag</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;m&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">meta_flag</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="n">nuc_zzaaam</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">nuc_name</span><span class="p">,</span> <span class="n">nuc_zzaaam</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.get_tra_or_dec"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_tra_or_dec">[docs]</a>    <span class="k">def</span> <span class="nf">get_tra_or_dec</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">input_file</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns the isotopes map to transform isotope `zzaaam` code to</span>
-<span class="sd">        Serpent2. Uses Serpent2 `*.out` file with list of all isotopes in</span>
-<span class="sd">        simulation.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        input_file : str</span>
-<span class="sd">            Serpent2 input file name and path.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        isotope_map : dict of str to str</span>
-<span class="sd">            Contains mapping for isotopes names from `zzaaam` to Serpent2 name</span>
-<span class="sd">            imported from Serpent2 ouput file:</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                The key is nuclide name in `zzaaam` format. For example,</span>
-<span class="sd">                `922350` or `982510`.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                Serpent2-oriented name. For instance, 92235.09c for transport</span>
-<span class="sd">                isotope or 982510 for decay only isotope).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">map_dict</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="c1"># Construct path to the *.out File</span>
-        <span class="n">out_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">.out&#39;</span> <span class="o">%</span> <span class="n">input_file</span><span class="p">)</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">out_file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">str_list</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
-        <span class="c1"># Stop-line</span>
-        <span class="n">end</span> <span class="o">=</span> <span class="s1">&#39; --- Table  2: Reaction and decay data: &#39;</span>
-        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">str_list</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">line</span><span class="p">:</span>
-                <span class="k">continue</span>
-            <span class="k">if</span> <span class="n">end</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                <span class="k">break</span>
-            <span class="k">if</span> <span class="s1">&#39;c  TRA&#39;</span> <span class="ow">in</span> <span class="n">line</span> <span class="ow">or</span> <span class="s1">&#39;c  DEC&#39;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                <span class="n">line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
-                <span class="n">iname</span><span class="p">,</span> <span class="n">zzaaam</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
-                <span class="n">map_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">zzaaam</span><span class="p">:</span> <span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">]})</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">map_dict</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.insert_path_to_geometry"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">insert_path_to_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Inserts ``include &lt;first_geometry_file&gt;`` line on the 6th line of</span>
-<span class="sd">        Serpent2 input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings containing modified path to geometry</span>
-<span class="sd">            in user&#39;s template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">template_data</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span>  <span class="c1"># Inserts on 6th line</span>
-                             <span class="s1">&#39;include </span><span class="se">\&quot;</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">geo_file</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\&quot;\n</span><span class="s1">&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_dep_comp"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp">[docs]</a>    <span class="k">def</span> <span class="nf">read_dep_comp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">input_file</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the Serpent2 `*_dep.m` file and returns a dictionary with</span>
-<span class="sd">        a `Materialflow` object for each burnable material.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        input_file : str</span>
-<span class="sd">            Path to Serpent2 input file.</span>
-<span class="sd">        read_at_end : bool, optional</span>
-<span class="sd">            Controls at which moment in the depletion step to read the data.</span>
-<span class="sd">            If `True`, the function reads data at the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">moment</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="k">if</span> <span class="n">read_at_end</span><span class="p">:</span>
-            <span class="n">moment</span> <span class="o">=</span> <span class="mi">1</span>
-
-        <span class="n">dep_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">_dep.m&#39;</span> <span class="o">%</span> <span class="n">input_file</span><span class="p">)</span>
-        <span class="n">dep</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_dep</span><span class="p">(</span><span class="n">dep_file</span><span class="p">,</span> <span class="n">make_mats</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">days</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;DAYS&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-        <span class="c1"># Read materials names from the file</span>
-        <span class="n">mat_name</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">mats</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">dep</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s1">&#39;MAT_(.+?)_VOLUME&#39;</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">m</span><span class="p">:</span>
-                <span class="n">mat_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
-        <span class="n">zai</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;ZAI&#39;</span><span class="p">][:</span><span class="o">-</span><span class="mi">2</span><span class="p">]))</span>  <span class="c1"># zzaaam codes of isotopes</span>
-
-        <span class="k">for</span> <span class="n">m</span> <span class="ow">in</span> <span class="n">mat_name</span><span class="p">:</span>
-            <span class="n">volume</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_VOLUME&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-            <span class="n">nucvec</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">zai</span><span class="p">,</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_MDENS&#39;</span><span class="p">][:,</span> <span class="n">moment</span><span class="p">]))</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_MDENS&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="n">moment</span><span class="p">]</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">*</span> <span class="n">volume</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">volume</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_BURNUP&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">get_tra_or_dec</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">mats</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_depcode_info"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses initial simulation info data from Serpent2 output and stores</span>
-<span class="sd">        it in the `DepcodeSerpent` object&#39;s ``sim_info`` attributes.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_version&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;VERSION&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TITLE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_input_filename&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INPUT_FILE_NAME&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_working_dir&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;WORKING_DIRECTORY&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;XS_DATA_FILE_PATH&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OMP_THREADS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MPI_TASKS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OPTIMIZATION_MODE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_depcode_step_param"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_step_param</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses data from Serpent2 output for each step and stores it in</span>
-<span class="sd">        `DepcodeSerpent` object&#39;s ``param`` attributes.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;CONVERSION_RATIO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;RUNNING_TIME&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_POWER&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MEMSIZE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">b_l</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="mf">.5</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_LAMBDA&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INI_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_depcode_template"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_template">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_template</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_path</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads prepared Serpent2 template (input)  file for use in</span>
-<span class="sd">        other class functions that prepare the input file for multiple runs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_path : str</span>
-<span class="sd">            Path to user template file for depletion code.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        tempalate_data : list</span>
-<span class="sd">            List of strings containing user template file.</span>
-
-<span class="sd">         &quot;&quot;&quot;</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">template_path</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">template_data</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.replace_burnup_parameters"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">replace_burnup_parameters</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">template_data</span><span class="p">,</span>
-            <span class="n">reactor</span><span class="p">,</span>
-            <span class="n">current_depstep_idx</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds or replaces the ``set power P dep daystep DEPSTEP`` line in</span>
-<span class="sd">        the Serpent2 input file. This line defines depletion history and power</span>
-<span class="sd">        levels with respect to the depletion step in the single run and</span>
-<span class="sd">        activates depletion calculation mode.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user template file.</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        current_depstep_idx : int</span>
-<span class="sd">            Current depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings containing modified in this function template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">line_idx</span> <span class="o">=</span> <span class="mi">8</span>  <span class="c1"># burnup setting line index by default</span>
-        <span class="n">current_depstep_power</span> <span class="o">=</span> <span class="n">reactor</span><span class="o">.</span><span class="n">power_levels</span><span class="p">[</span><span class="n">current_depstep_idx</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">current_depstep_idx</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">current_depstep</span> <span class="o">=</span> <span class="n">reactor</span><span class="o">.</span><span class="n">depl_hist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">current_depstep</span> <span class="o">=</span> <span class="n">reactor</span><span class="o">.</span><span class="n">depl_hist</span><span class="p">[</span><span class="n">current_depstep_idx</span><span class="p">]</span> <span class="o">-</span> \
-                <span class="n">reactor</span><span class="o">.</span><span class="n">depl_hist</span><span class="p">[</span><span class="n">current_depstep_idx</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;set    power   &#39;</span><span class="p">):</span>
-                <span class="n">line_idx</span> <span class="o">=</span> <span class="n">template_data</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
-                <span class="k">del</span> <span class="n">template_data</span><span class="p">[</span><span class="n">line_idx</span><span class="p">]</span>
-
-        <span class="n">template_data</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="n">line_idx</span><span class="p">,</span>  <span class="c1"># Insert on 9th line</span>
-                             <span class="s1">&#39;set    power   </span><span class="si">%5.9E</span><span class="s1">   dep daystep   </span><span class="si">%7.5E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                             <span class="p">(</span><span class="n">current_depstep_power</span><span class="p">,</span>
-                              <span class="n">current_depstep</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.run_depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode">[docs]</a>    <span class="k">def</span> <span class="nf">run_depcode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Runs Serpent2 as a subprocess with the given parameters.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cores: int</span>
-<span class="sd">            Number of cores to use for Serpent2 run (`-omp` flag in Serpent2).</span>
-<span class="sd">        nodes: int</span>
-<span class="sd">            Number of nodes to use for Serpent2 run (`-mpi` flag in Serpent2).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;/projects/sciteam/bahg/&#39;</span><span class="p">):</span>  <span class="c1"># check if BW</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="s1">&#39;aprun&#39;</span><span class="p">,</span>
-                <span class="s1">&#39;-n&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="n">nodes</span><span class="p">),</span>
-                <span class="s1">&#39;-d&#39;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span>
-                <span class="s1">&#39;-omp&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;/apps/exp_ctl/&#39;</span><span class="p">):</span>  <span class="c1"># check if Falcon</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="s1">&#39;mpiexec&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span>
-                <span class="s1">&#39;-omp&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="mi">18</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span> <span class="s1">&#39;-omp&#39;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span>
-                <span class="n">args</span><span class="p">,</span>
-                <span class="n">cwd</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_path</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span>
-                <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">STDOUT</span><span class="p">)</span>
-        <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">error</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">error</span><span class="o">.</span><span class="n">output</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span>
-            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> RUN FAILED</span><span class="se">\n</span><span class="s1"> see error message above&#39;</span>
-                               <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Finished Serpent2 Run&#39;</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.sss_meta_zzz"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.sss_meta_zzz">[docs]</a>    <span class="k">def</span> <span class="nf">sss_meta_zzz</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks Serpent2-specific meta stable-flag for zzaaam. For instance,</span>
-<span class="sd">        47310 instead of 471101 for `Ag-110m1`. Metastable isotopes represented</span>
-<span class="sd">        with `aaa` started with ``3``.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        nuc_code : str</span>
-<span class="sd">            Name of nuclide in Serpent2 form. For instance, `47310`.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuc_zzaam : int</span>
-<span class="sd">            Name of nuclide in `zzaaam` form (`471101`).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">zz</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa_new</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;1&#39;</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="n">nuc_code</span>
-        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">zzaaam</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.write_depcode_input"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_depcode_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_depcode_input</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">temp_file</span><span class="p">,</span>
-            <span class="n">inp_file</span><span class="p">,</span>
-            <span class="n">reactor</span><span class="p">,</span>
-            <span class="n">dep_step</span><span class="p">,</span>
-            <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes prepared data into the depletion code input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_file : str</span>
-<span class="sd">            Path to Serpent2 template file.</span>
-<span class="sd">        input_file : str</span>
-<span class="sd">            Path to input file for Serpent2 rerunning.</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">dep_step</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">restart</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">temp_file</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">insert_path_to_geometry</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">change_sim_par</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">create_iter_matfile</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">inp_file</span><span class="p">)</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">replace_burnup_parameters</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">data</span><span class="p">:</span>
-            <span class="n">out_file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">inp_file</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-            <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">out_file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.write_mat_file"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file">[docs]</a>    <span class="k">def</span> <span class="nf">write_mat_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dep_dict</span><span class="p">,</span> <span class="n">mat_file</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes the iteration input file containing the burnable materials</span>
-<span class="sd">        composition used in Serpent2 runs and updated after each depletion</span>
-<span class="sd">        step.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dep_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        mat_file : str</span>
-<span class="sd">            Path to file containing burnable materials composition.</span>
-<span class="sd">        dep_end_time : float</span>
-<span class="sd">            Current time at the end of the depletion step (d).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">matf</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">mat_file</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%%</span><span class="s1"> Material compositions (after </span><span class="si">%f</span><span class="s1"> days)</span><span class="se">\n\n</span><span class="s1">&#39;</span>
-                   <span class="o">%</span> <span class="n">dep_end_time</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">dep_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;mat  </span><span class="si">%s</span><span class="s1">  </span><span class="si">%5.9E</span><span class="s1"> burn 1 fix </span><span class="si">%3s</span><span class="s1"> </span><span class="si">%4i</span><span class="s1"> vol </span><span class="si">%7.5E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                       <span class="p">(</span><span class="n">key</span><span class="p">,</span>
-                        <span class="o">-</span><span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">,</span>
-                        <span class="s1">&#39;09c&#39;</span><span class="p">,</span>
-                        <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">temp</span><span class="p">,</span>
-                        <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-            <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># Transforms iso name from zas to zzaaam and then to SERPENT</span>
-                <span class="n">iso_name_serpent</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;           </span><span class="si">%9s</span><span class="s1">  </span><span class="si">%7.14E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                           <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="n">iso_name_serpent</span><span class="p">],</span>
-                            <span class="o">-</span><span class="n">wt_frac</span><span class="p">))</span>
-        <span class="n">matf</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div></div>
-</pre></div>
-
-           </div>
-          </div>
-          <footer>
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p></p>
-  </div>
-
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
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-</footer>
-        </div>
-      </div>
-    </section>
-  </div>
-  
-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.3.0
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="depcode.html">v0.3.0</a></dd>
-      <dd><a href="../../../v0.4.0/index.html">v0.4.0</a></dd>
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\ No newline at end of file
diff --git a/v0.3.0/_modules/saltproc/materialflow.html b/v0.3.0/_modules/saltproc/materialflow.html
deleted file mode 100644
index 34d6ea6cf..000000000
--- a/v0.3.0/_modules/saltproc/materialflow.html
+++ /dev/null
@@ -1,355 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.materialflow &mdash; Saltproc  documentation</title>
-      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
-      <link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
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-    <link rel="index" title="Index" href="../../genindex.html" />
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-</head>
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-  <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">pyne.material</span> <span class="kn">import</span> <span class="n">Material</span> <span class="k">as</span> <span class="n">pymat</span>
-<span class="kn">import</span> <span class="nn">copy</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">Counter</span>
-
-
-<div class="viewcode-block" id="Materialflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">[docs]</a><span class="k">class</span> <span class="nc">Materialflow</span><span class="p">(</span><span class="n">pymat</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Class contains information about burnable material flow. Based on PyNE</span>
-<span class="sd">        Material.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Materialflow.__init__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">mass</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">density</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">atoms_per_molecule</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">metadata</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">vol</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">temp</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span>
-            <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-            <span class="n">void_frac</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-            <span class="n">burnup</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Materialflow object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        PyNE.Material : class</span>
-<span class="sd">            PyNE Material parent class containing nuclide vector, density,</span>
-<span class="sd">            mass, atoms_per_molecule, metadata</span>
-<span class="sd">        temp : float</span>
-<span class="sd">            temperature of the material flow (K)</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        void_frac : float</span>
-<span class="sd">            void fraction in the material (%)</span>
-<span class="sd">        burnup : float</span>
-<span class="sd">            material burnup at the end of depletion step [MWd/kgU]</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize parent class attributes</span>
-        <span class="c1"># super().__init__()</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">vol</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">temp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="n">void_frac</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">burnup</span></div>
-
-<div class="viewcode-block" id="Materialflow.get_mass"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">[docs]</a>    <span class="k">def</span> <span class="nf">get_mass</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns total mass of the material descibed in Materialflow object.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        float</span>
-<span class="sd">            The mass of the object.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span></div>
-
-<div class="viewcode-block" id="Materialflow.print_attr"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">[docs]</a>    <span class="k">def</span> <span class="nf">print_attr</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Prints various attributes of Materialflow object.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Volume </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Density </span><span class="si">%f</span><span class="s2"> g/cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Atoms per molecule </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Meta </span><span class="si">%s</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass flowrate </span><span class="si">%f</span><span class="s2"> g/s&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Temperature </span><span class="si">%f</span><span class="s2"> K&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Void fraction </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Burnup </span><span class="si">%f</span><span class="s2"> MWd/kgU&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Materialflow.scale_matflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">[docs]</a>    <span class="k">def</span> <span class="nf">scale_matflow</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">f</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns nuclide vector dictionary, obtained from object attrs and</span>
-<span class="sd">        then scaled by factor.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        f : float</span>
-<span class="sd">            Scaling factor.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        new_mat_comp : dict of int to float</span>
-<span class="sd">            Materialflow nuclide component dictionary of relative mass.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                The keys are preserved from PyNE Material (integers</span>
-<span class="sd">                representing nuclides in id-form).</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                Each nuclide&#39;s mass fraction, multiplied by</span>
-<span class="sd">                factor f.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">old_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="p">)</span>
-        <span class="n">new_mat_comp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">old_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">new_mat_comp</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">*</span> <span class="n">value</span>
-        <span class="k">return</span> <span class="n">new_mat_comp</span></div>
-
-<div class="viewcode-block" id="Materialflow.copy_pymat_attrs"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">[docs]</a>    <span class="k">def</span> <span class="nf">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">src</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Copies PyNE attributites from source object (`src`) to target</span>
-<span class="sd">        object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        src : obj</span>
-<span class="sd">            Materialflow object to copy attributes from.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">density</span><span class="p">))</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                <span class="s1">&#39;atoms_per_molecule&#39;</span><span class="p">,</span>
-                <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span> <span class="o">=</span> <span class="n">src</span><span class="o">.</span><span class="n">metadata</span></div>
-
-<div class="viewcode-block" id="Materialflow.__deepcopy__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">[docs]</a>    <span class="k">def</span> <span class="nf">__deepcopy__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">memo</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return a deep copy of compound object `self`.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        self : obj</span>
-<span class="sd">            Compound object.</span>
-<span class="sd">        memo : dict, optional</span>
-<span class="sd">            Id-to-object correspondence to control for recursion.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            New compound object copied from `self`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Initiate new object my copying class from self</span>
-        <span class="bp">cls</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="c1"># Copy nuclide vector from self</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">scale_matflow</span><span class="p">())</span>
-        <span class="c1"># Copy Materialflow density and atoms_per_molecule</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-        <span class="c1"># Copy other object attributes such as volume, burnup, etc</span>
-        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="k">if</span> <span class="s1">&#39;comp&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">k</span><span class="p">:</span>
-                <span class="nb">setattr</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">v</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__eq__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">[docs]</a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python ``=`` operation to compare two Materialflow</span>
-<span class="sd">        objects. Compares objects total mass, density, atoms_per_molecule,</span>
-<span class="sd">        temperature, mass flowrate, and masses of important isotopes:</span>
-<span class="sd">        uranium-235 and uranium-238.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        other : obj</span>
-<span class="sd">            Materialflow object to compare with.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            Are the objects equal?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Materialflow</span><span class="p">):</span>
-            <span class="c1"># don&#39;t attempt to compare against unrelated types</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">vol</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">density</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">atoms_per_molecule</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">temp</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass_flowrate</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span></div>
-    <span class="c1">#</span>
-    <span class="c1"># Materialflow math operation Overloads</span>
-    <span class="c1">#</span>
-
-<div class="viewcode-block" id="Materialflow.__add__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">[docs]</a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python adding operation for Materialflow objects.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        x : obj</span>
-<span class="sd">            Materialflow object #1.</span>
-<span class="sd">        y : obj</span>
-<span class="sd">            Materialflow object #2.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            Materialflow which is a sum of isotope masses from `x` and `y`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">cls</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span>
-        <span class="n">x_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-        <span class="n">y_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
-        <span class="n">x_comp</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">y_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">x_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass  # averaged</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">temp</span>
-        <span class="c1"># Burnup is simply averaged by should be renormilized by heavy metal</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span>
-        <span class="c1"># result.density = result.mass/result.vol</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="p">(</span>
-            <span class="n">x</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">vol</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__rmul__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">[docs]</a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scaling_factor</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python multiplication operation for Materialflow objects.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        scaling_factor : float or int</span>
-<span class="sd">            Scaling factor.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            Materialflow object which has mass of each isotope and</span>
-<span class="sd">            mass_flowrate scaled by `other`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">scaling_factor</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-            <span class="n">result</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span>
-            <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass</span>
-            <span class="k">return</span> <span class="n">result</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">NotImplemented</span></div></div>
-</pre></div>
-
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-             
-  <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">math</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<div class="viewcode-block" id="Process"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process">[docs]</a><span class="k">class</span> <span class="nc">Process</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Class describes process which must be applied to Materialflow to change</span>
-<span class="sd">     burnable material composition.</span>
-<span class="sd">     &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Process.__init__"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Process object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        capacity : float</span>
-<span class="sd">            maximum mass flow rate of the material flow which current process</span>
-<span class="sd">            can handle (g/s)</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            total volume of the current facility (:math:`cm^3`)</span>
-<span class="sd">        efficiency : dict of str to float</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                element name for removal (not isotope)</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficency for the isotope (weight fraction)</span>
-<span class="sd">        optional_parameter : float</span>
-<span class="sd">            user can define any castom parameter in the input file describing</span>
-<span class="sd">            processes and use it in efficiency function</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">dictionary</span> <span class="ow">in</span> <span class="n">initial_data</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">dictionary</span><span class="p">:</span>
-                <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">dictionary</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">])</span></div>
-
-<div class="viewcode-block" id="Process.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Based on data from json file with Processes description calculate</span>
-<span class="sd">        value (float) of the removal efficiency. If it was str describing</span>
-<span class="sd">        efficiecny as a function (eps(x,m,t,P,L)) then calculating value. If it</span>
-<span class="sd">        constant (float in processes.json) then just keep it as is.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">eps</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">eps</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">attr</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="k">if</span> <span class="n">attr</span> <span class="ow">in</span> <span class="n">eps</span><span class="p">:</span>
-                    <span class="n">eps</span> <span class="o">=</span> <span class="n">eps</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">attr</span><span class="p">,</span> <span class="s2">&quot;self.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">attr</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">eps</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">eps</span><span class="p">)</span>
-        <span class="n">efficiency</span> <span class="o">=</span> <span class="nb">eval</span><span class="p">(</span><span class="n">eps</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">efficiency</span></div>
-
-<div class="viewcode-block" id="Process.check_mass_conservation"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">[docs]</a>    <span class="k">def</span> <span class="nf">check_mass_conservation</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checking that Process.outflow + Process.waste_stream is equal</span>
-<span class="sd">        Process.inflow and the total mass is being conserved. Returns `True` if</span>
-<span class="sd">        the mass conserved or `False` if its mismatched.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">out_stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">outflow</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">waste_stream</span>
-        <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_array_equal</span><span class="p">(</span><span class="n">out_stream</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">inflow</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Process.rem_elements"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.rem_elements">[docs]</a>    <span class="k">def</span> <span class="nf">rem_elements</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">inflow</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Updates Materialflow object `inflow` after removal target isotopes</span>
-<span class="sd">        with specific efficiency in single component of fuel reprocessing</span>
-<span class="sd">        system and returns waste stream Materialflow object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        inflow : Materialflow obj</span>
-<span class="sd">            Target material stream to remove poisons from.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        Materialflow object</span>
-<span class="sd">            Waste stream from the reprocessing system component.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">waste_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">out_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="c1"># print(&quot;Xe concentration in inflow before % f g&quot; % inflow[&#39;Xe136&#39;])</span>
-        <span class="c1"># print(&quot;Current time %f&quot; % (t))</span>
-        <span class="k">for</span> <span class="n">iso</span> <span class="ow">in</span> <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">el_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">serpent</span><span class="p">(</span><span class="n">iso</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">if</span> <span class="n">el_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">:</span>
-                <span class="c1"># Evaluate removal efficiency for el_name (float)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">calc_rem_efficiency</span><span class="p">(</span><span class="n">el_name</span><span class="p">)</span>
-                <span class="n">out_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span> <span class="o">*</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="mf">1.0</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">])</span>
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">out_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span>
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>  <span class="c1"># zeroes everywhere else</span>
-        <span class="n">waste</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">waste_nucvec</span><span class="p">)</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">-</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="n">out_nucvec</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Xe concentration in inflow after </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">inflow</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">])</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Waste mass </span><span class="si">%f</span><span class="s2"> g</span><span class="se">\n</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="k">del</span> <span class="n">out_nucvec</span><span class="p">,</span> <span class="n">waste_nucvec</span><span class="p">,</span> <span class="n">el_name</span>
-        <span class="k">return</span> <span class="n">waste</span></div></div>
-</pre></div>
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-  <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
-<span></span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-
-
-<div class="viewcode-block" id="Separator"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator">[docs]</a><span class="k">class</span> <span class="nc">Separator</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Class evaluates gas removal efficiency in separator (bubble separator).</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    q_salt : float</span>
-<span class="sd">        volumetric salt flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    q_he : float</span>
-<span class="sd">        volumetric helium flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.005</span>
-<span class="sd">    do : float</span>
-<span class="sd">        gas outlet diameter (m)</span>
-<span class="sd">        Ranging from 1~3cm in our simulations</span>
-<span class="sd">        Default: 0.02</span>
-<span class="sd">    dp : float</span>
-<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    db : float</span>
-<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">        Default: 0.001</span>
-<span class="sd">    deltap : float</span>
-<span class="sd">        Pressure difference between the inlet and the gas outlet (Pa)</span>
-<span class="sd">        (from 2e5 to 5e5 Pa)</span>
-<span class="sd">        Default: 4e5</span>
-<span class="sd">    temp_room: real</span>
-<span class="sd">        room temperature (Kelvin)</span>
-<span class="sd">        Default: 900</span>
-<span class="sd">    k : float</span>
-<span class="sd">        Slope of the initial swirling (use 1 for this).</span>
-
-<span class="sd">    Methods</span>
-<span class="sd">    -------</span>
-<span class="sd">    eff()</span>
-<span class="sd">        Evaluates gas removal efficiency from Jiaqi&#39;s correlation. [1]</span>
-<span class="sd">    description()</span>
-<span class="sd">        Contains a dictionary of plot properties.</span>
-<span class="sd">    calc_rem_efficiency(el_name)</span>
-<span class="sd">        Overrides exiting method in Parent class.</span>
-
-<span class="sd">    References</span>
-<span class="sd">    ----------</span>
-<span class="sd">    [1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
-<span class="sd">    Sensitivity Analysis. In preparation</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">k</span> <span class="o">=</span> <span class="mf">1.0</span>
-
-<div class="viewcode-block" id="Separator.__init__"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">do</span><span class="o">=</span><span class="mf">0.02</span><span class="p">,</span> <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>
-                 <span class="n">deltap</span><span class="o">=</span><span class="mf">4e5</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Separator object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        do : float</span>
-<span class="sd">            gas outlet diameter (m)</span>
-<span class="sd">            Ranging from 1~3cm in our simulations</span>
-<span class="sd">            Default: 0.02</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        deltap : float</span>
-<span class="sd">            Pressure difference between the inlet and the gas outlet (Pa)</span>
-<span class="sd">            (from 2e5 to 5e5 Pa)</span>
-<span class="sd">            Default: 4e5</span>
-<span class="sd">        temp_room: real</span>
-<span class="sd">            room temperature (Kelvin)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        jl : float</span>
-<span class="sd">            liquid superficial velocity (m/s)</span>
-<span class="sd">        alpha : float</span>
-<span class="sd">            void fraction</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values from Jiaqi&#39;s simulation</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">=</span> <span class="n">q_he</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">=</span> <span class="n">do</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">deltap</span> <span class="o">=</span> <span class="n">deltap</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">db</span> <span class="o">=</span> <span class="n">db</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">=</span> <span class="n">dp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">=</span> <span class="n">temp_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">jl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Separator.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides the existing method in Process class to provide</span>
-<span class="sd">        efficiency values of target isotopes calculated in eff() function.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">el_name</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">efficiency</span></div>
-
-<div class="viewcode-block" id="Separator.description"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in</span>
-<span class="sd">        sensitivity analysis</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        ------</span>
-<span class="sd">        pltdict: dict of str to str</span>
-<span class="sd">            contains instances&#39; information</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">plt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;q_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;salt flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;q_he&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;helium flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;do&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;gas outlet diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;dp&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;pipe diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;db&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;deltap&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;pressure difference ${(Pa)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;temp_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;average salt temperature ${(K)}$&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">}</span>
-                    <span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">plt_dict</span></div>
-
-<div class="viewcode-block" id="Separator.eff"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Evaluates gas/bubble separation efficiency from Jiaqi&#39;s correlation</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        rem_eff : dict of str to float</span>
-<span class="sd">            Dictionary that contains removal efficiency of each target</span>
-<span class="sd">            element.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of target isotope.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficiency.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">dc</span> <span class="o">=</span> <span class="mf">3.41</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">do</span>
-        <span class="n">mu</span> <span class="o">=</span> <span class="mf">1.076111581e-2</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="mi">1000</span><span class="p">)</span><span class="o">**</span><span class="p">(</span><span class="o">-</span><span class="mf">4.833549134</span><span class="p">)</span>
-        <span class="n">rho</span> <span class="o">=</span> <span class="p">(</span><span class="mf">6.105</span> <span class="o">-</span> <span class="mf">0.001272</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span><span class="p">)</span> <span class="o">*</span> <span class="mi">1000</span>
-        <span class="n">nu</span> <span class="o">=</span> <span class="n">mu</span> <span class="o">/</span> <span class="n">rho</span>
-        <span class="n">vl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="n">number_re</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="n">vl</span> <span class="o">/</span> <span class="n">nu</span>
-        <span class="n">etha</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="mf">3.2</span> <span class="o">*</span> <span class="n">rho</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">jl</span><span class="o">**</span><span class="mi">2</span> <span class="o">*</span> <span class="n">dc</span><span class="o">**</span><span class="mi">2</span> <span class="o">/</span>
-                    <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">do</span><span class="o">**</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltap</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">dvoid</span> <span class="o">=</span> <span class="p">(</span><span class="mf">4.89</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">db</span><span class="p">)</span><span class="o">**</span><span class="mf">1.27</span><span class="p">)</span> <span class="o">/</span>\
-                <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">k</span><span class="o">**</span><span class="mi">4</span> <span class="o">*</span> <span class="n">number_re</span><span class="p">)</span>
-        <span class="n">df</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">+</span> <span class="n">dvoid</span> <span class="o">/</span> <span class="p">(</span><span class="mi">100</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span><span class="p">)</span><span class="o">**</span><span class="mf">0.5</span><span class="p">)</span>
-        <span class="n">sep_eff</span> <span class="o">=</span> <span class="n">df</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mf">0.23</span> <span class="o">*</span> <span class="n">etha</span><span class="p">)</span> <span class="o">+</span> <span class="mf">3.26</span> <span class="o">*</span> <span class="n">etha</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">df</span><span class="p">)</span> <span class="o">*</span> <span class="n">df</span>
-        <span class="n">rem_eff</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">rem_eff</span></div></div>
-
-
-<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="n">Separator</span><span class="p">()</span><span class="o">.</span><span class="n">eff</span><span class="p">())</span>
-</pre></div>
-
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-    v: v0.3.0
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diff --git a/v0.3.0/_modules/saltproc/simulation.html b/v0.3.0/_modules/saltproc/simulation.html
deleted file mode 100644
index 4e28c858d..000000000
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-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
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-      <li class="breadcrumb-item active">saltproc.simulation</li>
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">tables</span> <span class="k">as</span> <span class="nn">tb</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
-
-
-<div class="viewcode-block" id="Simulation"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation">[docs]</a><span class="k">class</span> <span class="nc">Simulation</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Class sets up parameters for simulation, runs Serpent, parses output,</span>
-<span class="sd">    creates input.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Simulation.__init__"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">sim_name</span><span class="o">=</span><span class="s2">&quot;default&quot;</span><span class="p">,</span>
-            <span class="n">sim_depcode</span><span class="o">=</span><span class="s2">&quot;SERPENT&quot;</span><span class="p">,</span>
-            <span class="n">core_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-            <span class="n">node_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-            <span class="n">h5_file</span><span class="o">=</span><span class="s2">&quot;db_saltproc.h5&quot;</span><span class="p">,</span>
-            <span class="n">compression</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Filters</span><span class="p">(</span><span class="n">complevel</span><span class="o">=</span><span class="mi">9</span><span class="p">,</span>
-                                   <span class="n">complib</span><span class="o">=</span><span class="s1">&#39;blosc&#39;</span><span class="p">,</span>
-                                   <span class="n">fletcher32</span><span class="o">=</span><span class="kc">True</span><span class="p">),</span>
-            <span class="n">iter_matfile</span><span class="o">=</span><span class="s2">&quot;./saltproc_mat&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the Simulation object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sim_name: str</span>
-<span class="sd">            Name of simulation may contain number of reference case, paper name</span>
-<span class="sd">            or other specific information to identify simulation.</span>
-<span class="sd">        sim_depcode: obj</span>
-<span class="sd">            Depcode object initiated using Depcode class.</span>
-<span class="sd">        cores: int</span>
-<span class="sd">            Number of cores to use for Serpent run (`-omp` flag in Serpent).</span>
-<span class="sd">        nodes: int</span>
-<span class="sd">            Number of nodes to use for Serpent run (`-mpi` flag in Serpent).</span>
-<span class="sd">        h5_file: str</span>
-<span class="sd">            Name of HDF5 database.</span>
-<span class="sd">        compression: Pytables filter object</span>
-<span class="sd">            HDF5 database compression parameters.</span>
-<span class="sd">        iter_matfile: str</span>
-<span class="sd">            Name of file containing burnable materials composition used in</span>
-<span class="sd">            Serpent runs and update after each depletion step.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_name</span> <span class="o">=</span> <span class="n">sim_name</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span> <span class="o">=</span> <span class="n">sim_depcode</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">core_number</span> <span class="o">=</span> <span class="n">core_number</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">node_number</span> <span class="o">=</span> <span class="n">node_number</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span> <span class="o">=</span> <span class="n">h5_file</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">compression</span> <span class="o">=</span> <span class="n">compression</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">=</span> <span class="n">iter_matfile</span></div>
-
-<div class="viewcode-block" id="Simulation.runsim_no_reproc"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.runsim_no_reproc">[docs]</a>    <span class="k">def</span> <span class="nf">runsim_no_reproc</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">nsteps</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Run simulation sequence for integral test. No reprocessing involved,</span>
-<span class="sd">        just re-running Serpent for comparision with model output.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        nsteps : int</span>
-<span class="sd">            Number of depletion time steps in integration test run.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="c1">######################################################################</span>
-        <span class="c1"># Start sequence</span>
-        <span class="k">for</span> <span class="n">dts</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nsteps</span><span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Step #</span><span class="si">%i</span><span class="s2"> has been started&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">dts</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">dts</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>  <span class="c1"># First step</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">write_depcode_input</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">template_path</span><span class="p">,</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span>
-                    <span class="n">reactor</span><span class="p">,</span>
-                    <span class="n">dts</span><span class="p">,</span>
-                    <span class="kc">False</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">run_depcode</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">core_number</span><span class="p">,</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">node_number</span><span class="p">)</span>
-                <span class="c1"># Read general simulation data which never changes</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">store_run_init_info</span><span class="p">()</span>
-                <span class="c1"># Parse and store data for initial state (beginning of dts)</span>
-                <span class="n">mats</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span>
-                    <span class="kc">False</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dts</span><span class="p">,</span> <span class="s1">&#39;before_reproc&#39;</span><span class="p">)</span>
-            <span class="c1"># Finish of First step</span>
-            <span class="c1"># Main sequence</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">run_depcode</span><span class="p">(</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">core_number</span><span class="p">,</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">node_number</span><span class="p">)</span>
-            <span class="n">mats</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span>
-                <span class="kc">True</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dts</span><span class="p">,</span> <span class="s1">&#39;before_reproc&#39;</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">store_run_step_info</span><span class="p">()</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">write_mat_file</span><span class="p">(</span>
-                <span class="n">mats</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Simulation.store_after_repr"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">[docs]</a>    <span class="k">def</span> <span class="nf">store_after_repr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">after_mats</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">,</span> <span class="n">step</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds to HDF5 database waste streams data for each process after</span>
-<span class="sd">        reprocessing was performed (grams per depletion step).</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        after_mats : `Materialflow`</span>
-<span class="sd">            Burnable material stream object after performing reprocessing.</span>
-<span class="sd">        waste_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that maps `Process` objects to waste `Materialflow`</span>
-<span class="sd">            objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                `Process` name (`str`)</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object containing waste streams data.</span>
-<span class="sd">        step : int</span>
-<span class="sd">            Current depletion step.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">streams_gr</span> <span class="o">=</span> <span class="s1">&#39;in_out_streams&#39;</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">mn</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-            <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">mn</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">):</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span>
-                    <span class="n">mat_node</span><span class="p">,</span>
-                    <span class="n">streams_gr</span><span class="p">,</span>
-                    <span class="s1">&#39;Waste Material streams data for each process&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">proc</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-                <span class="c1"># proc_node = db.create_group(waste_group, proc)</span>
-                <span class="c1"># iso_idx[proc] = OrderedDict()</span>
-                <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-                <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="c1"># Read isotopes from Materialflow</span>
-                <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                    <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                    <span class="n">iso_idx</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">nuc</span><span class="p">)[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">coun</span>
-                    <span class="c1"># Convert wt% to absolute [user units]</span>
-                    <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                    <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
-                <span class="c1"># Try to open EArray and table and if not exist - create</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
-                        <span class="n">waste_group</span><span class="p">,</span>
-                        <span class="n">proc</span><span class="p">,</span>
-                        <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                        <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">)),</span>
-                        <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">proc</span><span class="p">)</span>
-                    <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
-                <span class="k">del</span> <span class="n">iso_wt_frac</span>
-                <span class="k">del</span> <span class="n">iso_idx</span>
-        <span class="c1"># Also save materials AFTER reprocessing and refill here</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">after_mats</span><span class="p">,</span> <span class="n">step</span><span class="p">,</span> <span class="s1">&#39;after_reproc&#39;</span><span class="p">)</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_mat_data"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">[docs]</a>    <span class="k">def</span> <span class="nf">store_mat_data</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">d_step</span><span class="p">,</span> <span class="n">moment</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes HDF5/Pytables database (if not exist) or append burnable</span>
-<span class="sd">        material composition, mass, density, volume, temperature, burnup,</span>
-<span class="sd">        mass_flowrate, void_fraction, at the current depletion step to it.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        d_step : int</span>
-<span class="sd">            Current depletion step.</span>
-<span class="sd">        moment : int</span>
-<span class="sd">            Indicates at which moment in the depletion step store the data. `0`</span>
-<span class="sd">            refers the beginning, `1` refers the end of depletion step.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Moment when store compositions</span>
-        <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-        <span class="c1"># numpy array row storage data for material physical properties</span>
-        <span class="n">mpar_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
-            <span class="p">(</span><span class="s1">&#39;mass&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;volume&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;temperature&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;mass_flowrate&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;void_fraction&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;burnup&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
-        <span class="p">])</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Storing material data for depletion step #</span><span class="si">%i</span><span class="s1">.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d_step</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;materials&#39;</span><span class="p">):</span>
-            <span class="n">comp_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span>
-                                         <span class="s1">&#39;materials&#39;</span><span class="p">,</span>
-                                         <span class="s1">&#39;Material data&#39;</span><span class="p">)</span>
-        <span class="c1"># Iterate over all materials</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="c1"># Create group for each material</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">comp_group</span><span class="p">,</span>
-                                <span class="n">key</span><span class="p">)</span>
-            <span class="c1"># Create group for composition and parameters before reprocessing</span>
-            <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">moment</span><span class="p">):</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span>
-                                <span class="n">moment</span><span class="p">,</span>
-                                <span class="s1">&#39;Material data before reprocessing&#39;</span><span class="p">)</span>
-            <span class="n">comp_pfx</span> <span class="o">=</span> <span class="s1">&#39;/materials/&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">moment</span><span class="p">)</span>
-            <span class="c1"># Read isotopes from Materialflow for material</span>
-            <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">coun</span>
-                <span class="c1"># Convert wt% to absolute [user units]</span>
-                <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="c1"># Store information about material properties in new array row</span>
-            <span class="n">mpar_row</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">temp</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">void_frac</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span>
-            <span class="p">)</span>
-            <span class="n">mpar_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">mpar_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">mpar_dtype</span><span class="p">)</span>
-            <span class="c1"># Try to open EArray and table and if not exist - create new one</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">comp_pfx</span><span class="p">,</span> <span class="s1">&#39;comp&#39;</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">earr</span><span class="o">.</span><span class="n">title</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; array exist, appending data.&#39;</span><span class="p">)</span>
-                <span class="n">mpar_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">comp_pfx</span><span class="p">,</span> <span class="s1">&#39;parameters&#39;</span><span class="p">)</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span>
-                    <span class="s1">&#39;Material &#39;</span> <span class="o">+</span>
-                    <span class="n">key</span> <span class="o">+</span>
-                    <span class="s1">&#39; array is not exist, making new one.&#39;</span><span class="p">)</span>
-                <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
-                    <span class="n">comp_pfx</span><span class="p">,</span>
-                    <span class="s1">&#39;comp&#39;</span><span class="p">,</span>
-                    <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                    <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">])),</span>
-                    <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">key</span><span class="p">)</span>
-                <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
-                <span class="c1"># Create table for material Parameters</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Creating &#39;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s1">&#39; parameters table.&#39;</span><span class="p">)</span>
-                <span class="n">mpar_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                    <span class="n">comp_pfx</span><span class="p">,</span>
-                    <span class="s1">&#39;parameters&#39;</span><span class="p">,</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">mpar_dtype</span><span class="p">),</span>
-                    <span class="s2">&quot;Material parameters data&quot;</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Dumping Material </span><span class="si">%s</span><span class="s1"> data </span><span class="si">%s</span><span class="s1"> to </span><span class="si">%s</span><span class="s1">.&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">moment</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">)))</span>
-            <span class="c1"># Add row for the timestep to EArray and Material Parameters table</span>
-            <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
-            <span class="n">mpar_table</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">mpar_array</span><span class="p">)</span>
-            <span class="k">del</span> <span class="p">(</span><span class="n">iso_wt_frac</span><span class="p">)</span>
-            <span class="k">del</span> <span class="p">(</span><span class="n">mpar_array</span><span class="p">)</span>
-            <span class="n">mpar_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_run_step_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_step_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds to database Serpent and Saltproc simulation parameters</span>
-<span class="sd">        (execution time, memory usage), multiplication factor, breeding ratio,</span>
-<span class="sd">        delayed neutron precursor data, fission mass, cumulative depletion</span>
-<span class="sd">        time, power level for the current time step.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="c1"># Read info from depcode _res.m File</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_step_param</span><span class="p">()</span>
-        <span class="c1"># Initialize beta groups number</span>
-        <span class="n">b_g</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">])</span>
-        <span class="c1"># numpy array row storage for run info</span>
-
-        <span class="k">class</span> <span class="nc">Step_info</span><span class="p">(</span><span class="n">tb</span><span class="o">.</span><span class="n">IsDescription</span><span class="p">):</span>
-            <span class="n">keff_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">keff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">breeding_ratio</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">step_execution_time</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">cumulative_time_at_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">power_level</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">memory_usage</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">beta_eff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-            <span class="n">delayed_neutrons_lambda_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-            <span class="n">fission_mass_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">fission_mass_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-        <span class="c1"># Open or restore db and append data to it</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">step_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;simulation_parameters&#39;</span><span class="p">)</span>
-            <span class="c1"># Read burn_time from previous step</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">=</span> <span class="n">step_info_table</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;cumulative_time_at_eds&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="n">step_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;simulation_parameters&#39;</span><span class="p">,</span>
-                <span class="n">Step_info</span><span class="p">,</span>
-                <span class="s2">&quot;Simulation parameters after each timestep&quot;</span><span class="p">)</span>
-            <span class="c1"># Intializing burn_time array at the first depletion step</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span>
-        <span class="c1"># Define row of table as step_info</span>
-        <span class="n">step_info</span> <span class="o">=</span> <span class="n">step_info_table</span><span class="o">.</span><span class="n">row</span>
-        <span class="c1"># Define all values in the row</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;step_execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;execution_time&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;cumulative_time_at_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span>
-        <span class="c1"># Inject the Record value into the table</span>
-        <span class="n">step_info</span><span class="o">.</span><span class="n">append</span><span class="p">()</span>
-        <span class="n">step_info_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_run_init_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_init_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds to database Serpent and Saltproc simulation parameters before</span>
-<span class="sd">        starting depletion sequence.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># numpy arraw row storage for run info</span>
-        <span class="n">sim_info_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
-            <span class="p">(</span><span class="s1">&#39;neutron_population&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;serpent_version&#39;</span><span class="p">,</span> <span class="s1">&#39;S20&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;title&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;serpent_input_filename&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;serpent_working_dir&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
-        <span class="p">])</span>
-        <span class="c1"># Read info from depcode _res.m File</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_info</span><span class="p">()</span>
-        <span class="c1"># Store information about material properties in new array row</span>
-        <span class="n">sim_info_row</span> <span class="o">=</span> <span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">,</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_version&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_input_filename&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_working_dir&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span>
-        <span class="p">)</span>
-        <span class="n">sim_info_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">sim_info_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">sim_info_dtype</span><span class="p">)</span>
-        <span class="c1"># Open or restore db and append datat to it</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span> <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">sim_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">)</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="n">sim_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">,</span>
-                <span class="n">sim_info_array</span><span class="p">,</span>
-                <span class="s2">&quot;Initial depletion code simulation parameters&quot;</span><span class="p">)</span>
-        <span class="n">sim_info_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Inserts line with path to next Serpent geometry file at the</span>
-<span class="sd">        beginning of the Serpent iteration input file.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">geo_line_n</span> <span class="o">=</span> <span class="mi">5</span>
-        <span class="n">f</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-        <span class="n">current_geo_file</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="n">geo_line_n</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="n">current_geo_idx</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">geo_file</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">current_geo_file</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">new_geo_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">geo_file</span><span class="p">[</span><span class="n">current_geo_idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">IndexError</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No more geometry files available </span><span class="se">\</span>
-<span class="s1">                  and the system went subcritical </span><span class="se">\n\n</span><span class="s1">&#39;</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Simulation ended&#39;</span><span class="p">)</span>
-            <span class="k">return</span>
-        <span class="n">new_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">current_geo_file</span><span class="p">,</span> <span class="n">new_geo_file</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Switching to next geometry file: &#39;</span><span class="p">,</span> <span class="n">new_geo_file</span><span class="p">)</span>
-
-        <span class="n">f</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">new_data</span><span class="p">)</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.read_k_eds_delta"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">[docs]</a>    <span class="k">def</span> <span class="nf">read_k_eds_delta</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_timestep</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads from database delta between previous and current `keff` at the</span>
-<span class="sd">        end of depletion step and returns `True` if predicted `keff` at the</span>
-<span class="sd">        next depletion step drops below 1.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        current_timestep : int</span>
-<span class="sd">            Number of current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Was this simulation restarted?</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            Is the reactor will become subcritical at the next step?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">current_timestep</span> <span class="o">&gt;</span> <span class="mi">3</span> <span class="ow">or</span> <span class="n">restart</span><span class="p">:</span>
-            <span class="c1"># Open or restore db and read data</span>
-            <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h5_file</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">sim_param</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">simulation_parameters</span>
-            <span class="n">k_eds</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">x</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">sim_param</span><span class="o">.</span><span class="n">iterrows</span><span class="p">()])</span>
-            <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-            <span class="n">delta_keff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">k_eds</span><span class="p">)</span>
-            <span class="n">avrg_keff_drop</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">delta_keff</span><span class="p">[</span><span class="o">-</span><span class="mi">4</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Average keff drop per step &quot;</span><span class="p">,</span> <span class="n">avrg_keff_drop</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;keff at the end of last step &quot;</span><span class="p">,</span> <span class="n">k_eds</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">k_eds</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">avrg_keff_drop</span> <span class="o">&lt;</span> <span class="mf">1.0</span><span class="p">:</span>
-                <span class="k">return</span> <span class="kc">True</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="kc">False</span></div>
-
-<div class="viewcode-block" id="Simulation.check_switch_geo_trigger"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">[docs]</a>    <span class="k">def</span> <span class="nf">check_switch_geo_trigger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_time</span><span class="p">,</span> <span class="n">switch_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Compares current timestep with user defined time to switch geometry.</span>
-<span class="sd">        Returns `True` if its time.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        current_timestep : int</span>
-<span class="sd">            Current time after depletion started.</span>
-<span class="sd">        switch_time : list</span>
-<span class="sd">            List containing moments in time when geometry have to be switched.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            is the next geometry must be used at the next step?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">current_time</span> <span class="ow">in</span> <span class="n">switch_time</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">True</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">False</span></div></div>
-</pre></div>
-
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diff --git a/v0.3.0/_modules/saltproc/sparger.html b/v0.3.0/_modules/saltproc/sparger.html
deleted file mode 100644
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-             
-  <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-
-
-<div class="viewcode-block" id="Sparger"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger">[docs]</a><span class="k">class</span> <span class="nc">Sparger</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Class evaluates gas removal efficiency in sparger (bubble generator).</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    h_const : dict of str to float</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of target isotope.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Henry&#39;s law constant.</span>
-<span class="sd">    gas_const : real</span>
-<span class="sd">        universal gas constant (Pa.m^3/mol-K)</span>
-<span class="sd">    diffusivity : real</span>
-<span class="sd">        liquid phase diffusivity (cm^2/s)</span>
-<span class="sd">    temp_room: real</span>
-<span class="sd">        room temperature (Kelvin)</span>
-<span class="sd">    exp_const: dict of str to float</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of target isotope.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            exponential constant from following reference</span>
-<span class="sd">    q_salt : float</span>
-<span class="sd">        volumetric salt flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    q_he : float</span>
-<span class="sd">        volumetric helium flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.005</span>
-<span class="sd">    length : float</span>
-<span class="sd">        sparger/contractor length (m)</span>
-<span class="sd">        Default: 10</span>
-<span class="sd">    dp : float</span>
-<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    db : float</span>
-<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">        Default: 0.001</span>
-<span class="sd">    temp_salt: float</span>
-<span class="sd">        salt temperature (K)</span>
-<span class="sd">        Default: 900</span>
-<span class="sd">    area : float</span>
-<span class="sd">        contactor cross-section (m^2)</span>
-
-<span class="sd">    Methods</span>
-<span class="sd">    -------</span>
-<span class="sd">    eps(h_const, kl_const)</span>
-<span class="sd">        Defines gas removal efficiency for sparger (bubble generator)</span>
-<span class="sd">        using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</span>
-<span class="sd">    eff()</span>
-<span class="sd">        Evaluates gas removal efficiencies for target isotopes.</span>
-<span class="sd">    sherwood()</span>
-<span class="sd">        Contains Sherwood number correlations from different sources.</span>
-<span class="sd">    description()</span>
-<span class="sd">        Contains a dictionary of plot properties.</span>
-<span class="sd">    calc_rem_efficiency(el_name)</span>
-<span class="sd">        Overrides exiting method in Parent class.</span>
-
-<span class="sd">    References</span>
-<span class="sd">    ----------</span>
-<span class="sd">    [1] Henry&#39;s law constants (Pa.m3/mol) for Xe, Kr, H from</span>
-<span class="sd">    Sander, R.: Compilation of Henry&#39;s law constants (version 4.0)</span>
-<span class="sd">    for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,</span>
-<span class="sd">    https://doi.org/10.5194/acp-15-4399-2015, 2015.</span>
-<span class="sd">    [2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating</span>
-<span class="sd">    Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge</span>
-<span class="sd">    National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.</span>
-<span class="sd">    [3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
-<span class="sd">    Sensitivity Analysis. In preparation</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">diffusivity</span> <span class="o">=</span> <span class="mf">2.5E-9</span>
-    <span class="n">gas_const</span> <span class="o">=</span> <span class="mf">8.314</span>
-    <span class="n">h_const</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mf">4.3e-5</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="mf">2.5e-5</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="mf">2.6e-6</span><span class="p">}</span>
-    <span class="n">temp_room</span> <span class="o">=</span> <span class="mf">298.15</span>
-    <span class="n">exp_const</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mi">2300</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="mi">1900</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="mi">0</span><span class="p">}</span>
-
-<div class="viewcode-block" id="Sparger.__init__"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                 <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="n">corr</span><span class="o">=</span><span class="s1">&#39;Jiaqi&#39;</span><span class="p">,</span>
-                 <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Sparger object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        length : float</span>
-<span class="sd">            sparger/contractor length (m)</span>
-<span class="sd">            Default: 10</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        temp_salt: float</span>
-<span class="sd">            salt temperature (K)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        corr: string</span>
-<span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi&#39;s</span>
-<span class="sd">             (1) milestone report from Jiaqi [3]</span>
-<span class="sd">             (2) ORNL-TM-2245 Eq.36 [2]</span>
-<span class="sd">             default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values comes from Jiaqi&#39;s simulation</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">=</span> <span class="n">q_he</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">length</span> <span class="o">=</span> <span class="n">length</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">=</span> <span class="n">dp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">db</span> <span class="o">=</span> <span class="n">db</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">=</span> <span class="n">temp_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">corr</span> <span class="o">=</span> <span class="n">corr</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Sparger.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides the existing method in Process class to provide</span>
-<span class="sd">        efficiency values of target isotopes calculated in eff() function.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">isotope</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">el_name</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">isotope</span></div>
-
-<div class="viewcode-block" id="Sparger.description"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in sensitivity</span>
-<span class="sd">        analysis</span>
-<span class="sd">        Return</span>
-<span class="sd">        ------</span>
-<span class="sd">        pltdict: dict of str to str</span>
-<span class="sd">            contains instances&#39; information</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">plt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;q_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;salt flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;q_he&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;helium flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;length&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;sparger pipe length ${(m)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;dp&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;sparger pipe diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;db&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;temp_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;average salt temperature ${(K)}$&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">}</span>
-                    <span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">plt_dict</span></div>
-
-<div class="viewcode-block" id="Sparger.eps"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[docs]</a>    <span class="k">def</span> <span class="nf">eps</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h_const</span><span class="p">,</span> <span class="n">kl_const</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiency using Eq. 4</span>
-<span class="sd">        from Peebles report (ORNL-TM-2245).</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            removal efficiency of a specific chemical element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">6</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">db</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span><span class="p">))</span>
-        <span class="n">alpha</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">gas_const</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="n">h_const</span><span class="p">)</span> <span class="o">*</span>\
-                <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span><span class="p">)</span>
-        <span class="n">beta</span> <span class="o">=</span> <span class="p">(</span><span class="n">kl_const</span> <span class="o">*</span> <span class="n">a</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">*</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">length</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">alpha</span><span class="p">))</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span>
-
-        <span class="k">return</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">beta</span><span class="p">))</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">alpha</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Sparger.sherwood"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[docs]</a>    <span class="k">def</span> <span class="nf">sherwood</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Contains Sherwood number correlations.</span>
-<span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi</span>
-<span class="sd">             (1) Jaiqi Ph.D. dissertation</span>
-<span class="sd">             (2) ORNL-TM-2245 Eq.36</span>
-<span class="sd">             default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
-<span class="sd">         &quot;&quot;&quot;</span>
-        <span class="n">sh_corr</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s1">&#39;ORNL-TM-2245&#39;</span><span class="p">:</span> <span class="s1">&#39;0.0096 * (number_re**0.913) * (number_sc**0.346)&#39;</span><span class="p">,</span>
-            <span class="s1">&#39;Jiaqi&#39;</span><span class="p">:</span> <span class="s1">&#39;2.06972 * (number_re ** 0.555) * (number_sc ** 0.5)&#39;</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">sh_corr</span></div>
-
-<div class="viewcode-block" id="Sparger.eff"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiencies for target isotopes.</span>
-<span class="sd">        In this function, vl, mu, rho, number_sh, number_sc, number_re and kl</span>
-<span class="sd">        are average liquid velocity (m/s), kinematic viscosity (Pa.s),</span>
-<span class="sd">        density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,</span>
-<span class="sd">        schmidt number, reynold number and liquid phase mass transfer</span>
-<span class="sd">        coefficient (m/s), respectively.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        rem_eff : dict of str to float</span>
-<span class="sd">            Dictionary containing removal efficiency of each target isotope.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of target isotope.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficiency.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">hh</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">:</span>
-            <span class="n">hh</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span>
-                           <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">exp_const</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">-</span>
-                                                         <span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_room</span><span class="p">)))</span>
-
-        <span class="n">mu</span> <span class="o">=</span> <span class="mf">1.076111581e-2</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="mi">1000</span><span class="p">)</span><span class="o">**</span><span class="p">(</span><span class="o">-</span><span class="mf">4.833549134</span><span class="p">)</span>
-        <span class="n">rho</span> <span class="o">=</span> <span class="p">(</span><span class="mf">6.105</span> <span class="o">-</span> <span class="mf">0.001272</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span><span class="p">)</span> <span class="o">*</span> <span class="mi">1000</span>
-        <span class="n">nu</span> <span class="o">=</span> <span class="n">mu</span> <span class="o">/</span> <span class="n">rho</span>
-        <span class="n">vl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="n">number_re</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="n">vl</span> <span class="o">/</span> <span class="n">nu</span>
-        <span class="n">number_sc</span> <span class="o">=</span> <span class="n">nu</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">diffusivity</span>
-        <span class="n">number_sh</span> <span class="o">=</span> <span class="nb">eval</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sherwood</span><span class="p">()[</span><span class="bp">self</span><span class="o">.</span><span class="n">corr</span><span class="p">],</span>
-                         <span class="p">{</span><span class="s1">&#39;number_sc&#39;</span><span class="p">:</span> <span class="n">number_sc</span><span class="p">,</span> <span class="s1">&#39;number_re&#39;</span><span class="p">:</span> <span class="n">number_re</span><span class="p">})</span>
-        <span class="n">kl</span> <span class="o">=</span> <span class="n">number_sh</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">diffusivity</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span>
-        <span class="n">rem_eff</span> <span class="o">=</span> <span class="p">{</span><span class="n">key</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">eps</span><span class="p">(</span><span class="n">hh</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">kl</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">rem_eff</span></div></div>
-
-
-<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s1">&#39;__main__&#39;</span><span class="p">:</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">Sparger</span><span class="p">()</span><span class="o">.</span><span class="n">eff</span><span class="p">())</span>
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diff --git a/v0.3.0/_modules/saltproc/tests/test_app.html b/v0.3.0/_modules/saltproc/tests/test_app.html
deleted file mode 100644
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-  <h1>Source code for saltproc.tests.test_app</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">app</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-<span class="n">main_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.json&#39;</span>
-<span class="n">dot_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.dot&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span><span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;sss2&#39;</span><span class="p">,</span>
-                         <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-                         <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-                         <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-                         <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_read_main_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_main_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">neutron_pop</span> <span class="o">==</span> <span class="mi">50</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">==</span> <span class="mi">20</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">==</span> <span class="mi">20</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">db_file</span> <span class="o">==</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/./db_saltproc.h5&#39;</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">geo_file</span> <span class="o">==</span> <span class="p">[</span><span class="s1">&#39;347_base.ini&#39;</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">restart_flag</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_equal</span><span class="p">(</span><span class="n">app</span><span class="o">.</span><span class="n">power_hist</span><span class="p">,</span> <span class="p">[</span><span class="mf">1.250E+9</span><span class="p">,</span> <span class="mf">1.250E+9</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_equal</span><span class="p">(</span><span class="n">app</span><span class="o">.</span><span class="n">depl_hist</span><span class="p">,</span> <span class="p">[</span><span class="mi">5</span><span class="p">,</span> <span class="mi">10</span><span class="p">])</span></div>
-
-
-<div class="viewcode-block" id="test_read_processes_from_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_processes_from_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="n">procs</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_processes_from_input</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;heat_exchanger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">1.37E+7</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;H&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Kr&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Xe&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;H&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.15</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Kr&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.87</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">11.0</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Tb&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Dy&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span></div>
-
-
-<div class="viewcode-block" id="test_read_feeds_from_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_feeds_from_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_feeds_from_input</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">4.9602E+8</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="mf">4.9602</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15426147.398592</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">293096800.37484</span></div>
-
-
-<div class="viewcode-block" id="test_read_dot"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot">[docs]</a><span class="k">def</span> <span class="nf">test_read_dot</span><span class="p">():</span>
-    <span class="n">burnable_mat</span><span class="p">,</span> <span class="n">paths</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_dot</span><span class="p">(</span><span class="n">dot_input</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">burnable_mat</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span>
-    <span class="k">assert</span> <span class="n">paths</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;sparger&#39;</span>
-    <span class="k">assert</span> <span class="n">paths</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;heat_exchanger&#39;</span>
-    <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">paths</span><span class="p">)</span> <span class="o">==</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">7</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_reprocessing"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing">[docs]</a><span class="k">def</span> <span class="nf">test_reprocessing</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">rem_mass</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1401.0846504569054</span>
-    <span class="k">assert</span> <span class="n">rem_mass</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">][</span><span class="s1">&#39;Xe135&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">11.878661583083327</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">][</span><span class="s1">&#39;I135&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.90990472940444</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">][</span><span class="s1">&#39;Sr90&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.7486923392931839</span></div>
-
-
-<div class="viewcode-block" id="test_refill"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill">[docs]</a><span class="k">def</span> <span class="nf">test_refill</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-    <span class="n">m_after_refill</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">43.573521906078334</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">827.8969156550545</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">461.8575149906222</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">67.75331008246572</span></div>
-</pre></div>
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diff --git a/v0.3.0/_modules/saltproc/tests/test_depcode.html b/v0.3.0/_modules/saltproc/tests/test_depcode.html
deleted file mode 100644
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-      <li class="breadcrumb-item active">saltproc.tests.test_depcode</li>
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-             
-  <h1>Source code for saltproc.tests.test_depcode</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Reactor</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span><span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;sss2&#39;</span><span class="p">,</span>
-                         <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-                         <span class="n">input_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span><span class="p">,</span>
-                         <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-                         <span class="n">geo_file</span><span class="o">=</span><span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">directory</span><span class="p">,</span> <span class="s1">&#39;../test_geo.inp&#39;</span><span class="p">)])</span>
-
-<span class="n">msr</span> <span class="o">=</span> <span class="n">Reactor</span><span class="p">(</span><span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-              <span class="n">power_levels</span><span class="o">=</span><span class="p">[</span><span class="mf">1.250E+09</span><span class="p">,</span> <span class="mf">1.250E+09</span><span class="p">,</span> <span class="mf">5.550E+09</span><span class="p">],</span>
-              <span class="n">depl_hist</span><span class="o">=</span><span class="p">[</span><span class="mf">111.111</span><span class="p">,</span> <span class="mf">2101.9</span><span class="p">,</span> <span class="mf">3987.5</span><span class="p">])</span>
-
-
-<div class="viewcode-block" id="test_get_tra_or_dec"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_tra_or_dec">[docs]</a><span class="k">def</span> <span class="nf">test_get_tra_or_dec</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">get_tra_or_dec</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">380880</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;38088.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">962400</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;96240.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">952421</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;95342.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">340831</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;340831&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">300732</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;300732&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">511262</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;511262&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">420931</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;420931&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">410911</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;410911&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_sss_meta_zzz"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_sss_meta_zzz">[docs]</a><span class="k">def</span> <span class="nf">test_sss_meta_zzz</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">47310</span><span class="p">)</span> <span class="o">==</span> <span class="mi">471101</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">95342</span><span class="p">)</span> <span class="o">==</span> <span class="mi">952421</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">61348</span><span class="p">)</span> <span class="o">==</span> <span class="mi">611481</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">52327</span><span class="p">)</span> <span class="o">==</span> <span class="mi">521271</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">1001</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1001</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">1002</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1002</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sss_meta_zzz</span><span class="p">(</span><span class="mi">48315</span><span class="p">)</span> <span class="o">==</span> <span class="mi">481151</span></div>
-
-
-<div class="viewcode-block" id="test_read_depcode_template"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_template">[docs]</a><span class="k">def</span> <span class="nf">test_read_depcode_template</span><span class="p">():</span>
-    <span class="n">template_str</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;%therm zrh_h 900 hzr05.32t hzr06.32t</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">18</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop 30 20 10</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">22</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set bumode  2</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">23</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pcc     1</span><span class="se">\n</span><span class="s1">&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_change_sim_par"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par">[docs]</a><span class="k">def</span> <span class="nf">test_change_sim_par</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="mi">1111</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="mi">101</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="mi">33</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">change_sim_par</span><span class="p">(</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-    <span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span><span class="p">[</span><span class="mi">18</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_get_nuc_name"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name">[docs]</a><span class="k">def</span> <span class="nf">test_get_nuc_name</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;92235.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;U235&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;38088.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Sr88&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;95342.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Am242m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;61348.03c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Pm148m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;20060&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;He6&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;110241&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Na24m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;170381&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Cl38m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;310741&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Ga74m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;290702&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Cu70m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;250621&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Mn62m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;300732&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Zn73m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;370981&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Rb98m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;390972&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Y97m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;491142&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;In114m2&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_read_depcode_info"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info">[docs]</a><span class="k">def</span> <span class="nf">test_read_depcode_info</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_info</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;serpent_version&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Serpent 2.1.31&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Untitled&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span></div>
-
-
-<div class="viewcode-block" id="test_read_depcode_step_param"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param">[docs]</a><span class="k">def</span> <span class="nf">test_read_depcode_step_param</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_step_param</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">10552.84</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">81.933</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1.00651e+00</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1.00569e+00</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mi">70081</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">70077.1</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5.20000e-04</span></div>
-
-
-<div class="viewcode-block" id="test_read_dep_comp"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp">[docs]</a><span class="k">def</span> <span class="nf">test_read_dep_comp</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5449107.821098938</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">8.787897203694538e-22</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1231.3628804629795</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5812.83289505528</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15350.701473655872</span></div>
-
-
-<div class="viewcode-block" id="test_write_mat_file"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file">[docs]</a><span class="k">def</span> <span class="nf">test_write_mat_file</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">mat_file</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;.mat&#39;</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">write_mat_file</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">mat_file</span><span class="p">,</span> <span class="mf">12.0</span><span class="p">)</span>
-    <span class="n">mat_str</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">mat_file</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;% Material compositions (after 12.000000 days)</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">if</span> <span class="s1">&#39;fuel&#39;</span> <span class="ow">in</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]:</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;2.27175E+07&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;-4.960200000E+00&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">1663</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11635E+04&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">1664</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;            1001.09c  -1.21000137902945E-35</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">elif</span> <span class="s1">&#39;ctrlPois&#39;</span> <span class="ow">in</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]:</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11635E+04&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;            1001.09c  -1.21000137902945E-35</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">mat_file</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_insert_path_to_geometry"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry">[docs]</a><span class="k">def</span> <span class="nf">test_insert_path_to_geometry</span><span class="p">():</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-    <span class="n">d_new</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">insert_path_to_geometry</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;test_geo.inp&quot;</span><span class="se">\n</span><span class="s1">&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_replace_burnup_parameters"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters">[docs]</a><span class="k">def</span> <span class="nf">test_replace_burnup_parameters</span><span class="p">():</span>
-    <span class="n">time</span> <span class="o">=</span> <span class="n">msr</span><span class="o">.</span><span class="n">depl_hist</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
-    <span class="n">time</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">)</span>
-    <span class="n">depsteps</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">time</span><span class="p">)</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">msr</span><span class="o">.</span><span class="n">power_levels</span><span class="p">)):</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">replace_burnup_parameters</span><span class="p">(</span><span class="n">d</span><span class="p">,</span>
-                                              <span class="n">msr</span><span class="p">,</span>
-                                              <span class="n">idx</span><span class="p">)</span>
-        <span class="n">out_file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">),</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-        <span class="n">out_file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">d_new</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span>
-            <span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;daystep&#39;</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="nb">str</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%5.9E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">msr</span><span class="o">.</span><span class="n">power_levels</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="nb">str</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%7.5E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">depsteps</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span></div>
-
-
-<div class="viewcode-block" id="test_create_iter_matfile"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile">[docs]</a><span class="k">def</span> <span class="nf">test_create_iter_matfile</span><span class="p">():</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">)</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">create_iter_matfile</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_write_depcode_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input">[docs]</a><span class="k">def</span> <span class="nf">test_write_depcode_input</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">write_depcode_input</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_path</span><span class="p">,</span>
-                                <span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;_write_test&#39;</span><span class="p">,</span>
-                                <span class="n">msr</span><span class="p">,</span>
-                                <span class="mi">0</span><span class="p">,</span>
-                                <span class="kc">False</span><span class="p">)</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;_write_test&#39;</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;tests&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;material&quot;</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.250000000E+09&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;daystep&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11111E+02&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">20</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop 1111 101 33</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;_write_test&#39;</span><span class="p">)</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span></div>
-</pre></div>
-
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-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.3.0
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diff --git a/v0.3.0/_modules/saltproc/tests/test_materialflow.html b/v0.3.0/_modules/saltproc/tests/test_materialflow.html
deleted file mode 100644
index 1c0081d79..000000000
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+++ /dev/null
@@ -1,169 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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-      <li class="breadcrumb-item active">saltproc.tests.test_materialflow</li>
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-             
-  <h1>Source code for saltproc.tests.test_materialflow</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_get_mass"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass">[docs]</a><span class="k">def</span> <span class="nf">test_get_mass</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span> <span class="o">==</span> <span class="mf">112683343.50000001</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5449107.821098938</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">8.787897203694538e-22</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1231.3628804629795</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span> <span class="o">==</span> <span class="mf">65563.2355</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5812.83289505528</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15350.701473655872</span></div>
-
-
-<div class="viewcode-block" id="test_scale_matflow"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow">[docs]</a><span class="k">def</span> <span class="nf">test_scale_matflow</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">scale_factor</span> <span class="o">=</span> <span class="mf">0.7</span>
-    <span class="n">scaled_matflow</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">scale_matflow</span><span class="p">(</span><span class="n">scale_factor</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">90190000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">30070000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">5449107.821098938</span></div>
-
-
-<div class="viewcode-block" id="test_copy_pymat_attrs"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs">[docs]</a><span class="k">def</span> <span class="nf">test_copy_pymat_attrs</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">target_mat</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span>
-    <span class="n">target_mat</span><span class="o">.</span><span class="n">copy_pymat_attrs</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">])</span>
-    <span class="k">assert</span> <span class="n">target_mat</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="mf">5.873</span>
-    <span class="k">assert</span> <span class="n">target_mat</span><span class="o">.</span><span class="n">atoms_per_molecule</span> <span class="o">==</span> <span class="o">-</span><span class="mf">1.0</span></div>
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-             
-  <h1>Source code for saltproc.tests.test_process</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Process</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                  <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                  <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                  <span class="n">efficiency</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mf">1.0</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="s1">&#39;9.5/mass_flowrate&#39;</span><span class="p">})</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">19.79776930513891</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">176.44741987005173</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">9.911913132605642e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.026158507248944377</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">6.420212330439721e-17</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">1.6462261463853208e-06</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.0002724894672886946</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">26.847312879174968</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">531.0633118374121</span></div>
-</pre></div>
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diff --git a/v0.3.0/_modules/saltproc/tests/test_separator.html b/v0.3.0/_modules/saltproc/tests/test_separator.html
deleted file mode 100644
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--- a/v0.3.0/_modules/saltproc/tests/test_separator.html
+++ /dev/null
@@ -1,158 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
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-      <link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
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-             
-  <h1>Source code for saltproc.tests.test_separator</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Separator</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Separator</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                    <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                    <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                    <span class="n">efficiency</span><span class="o">=</span><span class="s2">&quot;self&quot;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">19.5320018359295</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">174.0787699729534</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">9.778854502227908e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.025807352522232645</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">1.2668053364239955e-15</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">1.709607392097611e-06</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.0002829805665329617</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">27.88095952489617</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">527.0884551454453</span></div>
-</pre></div>
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diff --git a/v0.3.0/_modules/saltproc/tests/test_simulation.html b/v0.3.0/_modules/saltproc/tests/test_simulation.html
deleted file mode 100644
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+++ /dev/null
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-<!DOCTYPE html>
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-      <li class="breadcrumb-item active">saltproc.tests.test_simulation</li>
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.tests.test_simulation</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Simulation</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-<span class="n">geo_test_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test_geometry_switch.inp&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_file</span><span class="o">=</span><span class="p">[</span>
-        <span class="s1">&#39;../../examples/406.inp&#39;</span><span class="p">,</span>
-        <span class="s1">&#39;../../examples/988.inp&#39;</span><span class="p">])</span>
-
-<span class="n">simulation</span> <span class="o">=</span> <span class="n">Simulation</span><span class="p">(</span><span class="n">sim_name</span><span class="o">=</span><span class="s1">&#39;Simulation unit tests&#39;</span><span class="p">,</span>
-                        <span class="n">sim_depcode</span><span class="o">=</span><span class="n">serpent</span><span class="p">,</span>
-                        <span class="n">core_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">node_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">h5_file</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test_db.h5&#39;</span><span class="p">,</span>
-                        <span class="n">iter_matfile</span><span class="o">=</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_read_k_eds_delta"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta">[docs]</a><span class="k">def</span> <span class="nf">test_read_k_eds_delta</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">read_k_eds_delta</span><span class="p">(</span><span class="mi">7</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span></div>
-
-
-<div class="viewcode-block" id="test_switch_to_next_geometry"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_switch_to_next_geometry">[docs]</a><span class="k">def</span> <span class="nf">test_switch_to_next_geometry</span><span class="p">():</span>
-    <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">geo_test_input</span><span class="p">,</span> <span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;_test&#39;</span><span class="p">)</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span> <span class="o">+</span> <span class="s1">&#39;_test&#39;</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">switch_to_next_geometry</span><span class="p">()</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_template</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;988.inp&quot;</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">input_path</span><span class="p">)</span></div>
-</pre></div>
-
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diff --git a/v0.3.0/_modules/saltproc/tests/test_sparger.html b/v0.3.0/_modules/saltproc/tests/test_sparger.html
deleted file mode 100644
index 4464bdb93..000000000
--- a/v0.3.0/_modules/saltproc/tests/test_sparger.html
+++ /dev/null
@@ -1,158 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
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-      <li class="breadcrumb-item active">saltproc.tests.test_sparger</li>
-      <li class="wy-breadcrumbs-aside">
-      </li>
-  </ul>
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.tests.test_sparger</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Sparger</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">input_file</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">input_path</span><span class="o">=</span><span class="n">input_file</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_file</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Sparger</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                  <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                  <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                  <span class="n">efficiency</span><span class="o">=</span><span class="s2">&quot;self&quot;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="n">input_file</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">8.061014535231715</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">71.8437109936129</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">4.0358120454079906e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.010650902326605592</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">6.420212330439721e-17</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">7.029023635956131e-07</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.00011634701042301513</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">11.463212220507412</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">217.43479356542446</span></div>
-</pre></div>
-
-           </div>
-          </div>
-          <footer>
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p></p>
-  </div>
-
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
-
-</footer>
-        </div>
-      </div>
-    </section>
-  </div>
-  
-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.3.0
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="test_sparger.html">v0.3.0</a></dd>
-      <dd><a href="../../../../v0.4.0/index.html">v0.4.0</a></dd>
-    </dl>
-    <dl>
-      <dt>Branches</dt>
-      <dd><a href="../../../../master/index.html">master</a></dd>
-    </dl>
-  </div>
-</div><script>
-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script> 
-
-</body>
-</html>
\ No newline at end of file
diff --git a/v0.3.0/_sources/examples.rst.txt b/v0.3.0/_sources/examples.rst.txt
deleted file mode 100644
index 4f1f2c98f..000000000
--- a/v0.3.0/_sources/examples.rst.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-Examples
-=========
-
-A number of examples are present in the `examples directory`_ provided with the source code.
-
-.. _examples directory: https://github.com/arfc/saltproc/tree/master/examples
-
-Transatomic Power Molten Salt Reactor example can be run with:
-
-
-.. code-block:: bash
-
-   cd /path/to/saltproc
-   python saltproc -i examples/tap/tap_main.json
-
-
-In the example above, ``path/to/saltproc`` is, of course, the path to the main
-saltproc directory, containing ``setup.py``. The ``tap_main.json`` is the main
-Saltproc input file, which contains paths to Serpent input file
-(``tap.serpent``), DOT-file with reprocessing scheme (``tap.dot``), and
-reprocessing system components' detailed description (``tap_objects.json``).
-
-
-Similarly, Molten Salt Breeder Reactor example can be run with:
-
-
-.. code-block:: bash
-
-   python saltproc -i examples/msbr/msbr_main.json
diff --git a/v0.3.0/_sources/index.rst.txt b/v0.3.0/_sources/index.rst.txt
deleted file mode 100644
index dd5ad5830..000000000
--- a/v0.3.0/_sources/index.rst.txt
+++ /dev/null
@@ -1,80 +0,0 @@
-.. Saltproc documentation master file, created by
-   sphinx-quickstart on Tue Jul  3 14:26:54 2018.
-   You can adapt this file completely to your liking, but it should at least
-   contain the root `toctree` directive.
-
-SaltProc
-=========
-
-**SaltProc** is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the Serpent 2 Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
-calculation.
-
-**SaltProc** welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including `pyne`_, `numpy`_, `matplotlib`_,
-`networkx`_, and `pydotplus`_.
-
-.. _pyne: http://pyne.io/
-.. _numpy: http://numpy.org
-.. _matplotlib: http://matplotlib.org
-.. _networkx: http://networkx.github.io
-.. _pydotplus: https://pydotplus.readthedocs.io/
-
-
-Documentation
--------------
-
-.. toctree::
-   :maxdepth: 1
-
-   overview
-   installation
-   examples
-   src/index
-   How to cite <https://github.com/arfc/saltproc/blob/master/CITATION.md>
-
-Indices and tables
-------------------
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-
-
-
-Citation
---------
-
-Up-to-date information about citing SaltProc can be found within the `citation`_
-file.
-
-.. _citation: https://github.com/arfc/saltproc/blob/master/CITATION.md
-
-
-Get in touch
-------------
-
-- Please report bugs, suggest feature ideas, and browse the source code `on GitHub`_.
-- There, new contributors can also find `a guide to contributing`_.
-- Good start point for new contributors is `current open issues`_.
-
-.. _a guide to contributing: https://github.com/arfc/saltproc/blob/master/CONTRIBUTING.md
-.. _current open issues: https://github.com/arfc/saltproc/issues?q=is%3Aopen+is%3Aissue
-.. _on GitHub: http://github.com/arfc/saltproc
-
-Acknowledgment
---------------
-
-SaltProc uses `Shablona`_ template which is universal solution for small
-scientific python projects developed at University of Washington `eScience Insititute`_.
-
-.. _Shablona: https://github.com/uwescience/shablona
-.. _eScience Insititute: https://escience.washington.edu
-
-License
--------
-
-SaltProc is available under the open source `BSD 3-clause License`__.
-
-__ https://raw.githubusercontent.com/arfc/saltproc/master/LICENSE
diff --git a/v0.3.0/_sources/installation.rst.txt b/v0.3.0/_sources/installation.rst.txt
deleted file mode 100644
index cda9562c6..000000000
--- a/v0.3.0/_sources/installation.rst.txt
+++ /dev/null
@@ -1,82 +0,0 @@
-Installation
-============
-
-SaltProc has the following dependencies:
-
-  #. `Python`_ (>=3.5)
-  #. `Serpent`_ (>=2.1.31)
-  #. `PyNE`_ (>=0.5.11)
-  #. `NumPy`_ (>=1.14.0)
-  #. `PyTables`_
-  #. `NetworkX`_
-  #. `PyDotPlus`_
-
-.. _Serpent: http://montecarlo.vtt.fi
-.. _PyNE: http://pyne.io
-.. _Python: http://python.org
-.. _NumPy: http://numpy.org
-.. _PyTables: http://pytables.org
-.. _NetworkX: http://networkx.github.io
-.. _PyDotPlus: https://pydotplus.readthedocs.io/
-.. _matplotlib: http://matplotlib.org
-.. _ViTables: http://vitables.org
-.. _GitHub: http://github.com/arfc/saltproc
-
-
-Optional Depenendencies:
-
-  #. `matplotlib`_
-  #. `ViTables`_
-
-
-
-Most of the dependencies are readily available through package managers.
-Once all the dependencies are installed, SaltProc can be installed.
-Clone the source from the SaltProc repository from `GitHub`_.
-Then run the following commands from the directory above cloned repository:
-
-.. code-block:: bash
-
-   git clone https://github.com/arfc/saltproc.git
-   cd saltproc/
-   python setup.py install --user
-
-Please let us know if you run into trouble.
-
-Cross Section Configuration
----------------------------
-SaltProc can use any cross section library that Serpent can. See `this page on the Serpent wiki`_ for information on how to configure the libraries. 
-
-.. _this page on the Serpent wiki: https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries
-
-Testing
--------
-The SaltProc test suite has two types of tests: unit tests and regression tests.
-The unit tests check that the individual functions and classes of the ``saltproc``
-module return the correct type of variables and correct values, where applicable. 
-The regression tests run a full SaltProc simulation and check the final result
-with a precalculated result. 
-The integration tests require the `JEFF 3.1.2 cross section library`_ as well
-as neutron induces and spontaneous fission product yield data from JEFF 3.3. 
-The publicly available versions of JEFF 3.1.2  cannot be used with Serpent right
-out of the box due to `Serpent's notation for isomeric states`_. The scripts in
-``scripts/xsdata`` download all necessary libraries and perform all the necessary processing on them for use in Serpent 2.
-We recommend using them for your convenience. 
-See the `README`_ for more information.
-
-.. _Serpent's notation for isomeric states: https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries
-.. _JEFF 3.1.2 cross section library: https://www.oecd-nea.org/dbforms/data/eva/evatapes/jeff_31/JEFF312/
-.. _README: https://github.com/arfc/saltproc/blob/master/scripts/README.md
-
-To run the tests, execute:
-
-.. code-block:: bash
-
-   pytest saltproc/
-
-from the root directory of SaltProc. If you just want to run the unit tests, execute
-
-.. code-block:: bash
-
-   pytest --ignore saltproc/tests/integration_tests saltproc/
-
diff --git a/v0.3.0/_sources/overview.rst.txt b/v0.3.0/_sources/overview.rst.txt
deleted file mode 100644
index 82d263510..000000000
--- a/v0.3.0/_sources/overview.rst.txt
+++ /dev/null
@@ -1,87 +0,0 @@
-Overview
-=========
-
-SaltProc couples directly with the Monte Carlo neutron transport code Serpent 2
-and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:
-
-- neutron poison removal with user-defined efficiency,
-- make-up mass loss by fresh fuel injection,
-- reactivity control by adjusting fuel feed rate or geometry change,
-- can model any reactor design,
-- potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).
-
-
-How SaltProc works
--------------------
-
-SaltProc is a driver for Serpent to simulate online fuel salt reprocessing for
-Molten Salt Reactors. It performs following major functions:
-
-  - runs SERPENT
-  - parses and stores Serpent output data in HDF5
-  - modifies parsed material composition (`reprocesses`)
-  - creates Serpent input file
-
-
-The code logic flow is the following:
-
-  1. Runs Serpent (`saltproc.depcode.run_depcode()`)
-  2. Parses through the output `*_dep.m` file and creates PyNE Material object
-     for each burnable material.
-  3. Processes Fuel (`saltproc.app.reprocessing()` and `saltproc.refill`):
-
-    * Passes fuel composition throughout Processes objects (reprocessing system
-      components) to remove poisons with specific efficiency.
-    * Adds back fissile and/or fertile material to make-up loss of material.
-
-  4. Records data:
-
-    - Depleted fuel composition (`materials/fuel/before_reproc` table in HDF5)
-    - Reprocessed fuel composition (`materials/fuel/after_reproc` table in
-      HDF5)
-    - Multiplication factor at the beginning and at the end of depletion step
-      (`simulation_parameters/keff_bds`, `simulation_parameters/keff_eds`)
-    - Effective Delayed Neutron Fraction (:math:`\beta_{eff}`) at the end of
-      the depletion step (`simulation_parameters/beta_eff_eds`)
-    - Waste and feed streams from each `Process` (`materials/in_out_streams/`)
-
-  5. Repeats 1-4.
-
-Updates
--------
-
-March 2021:
-
-Besides the existing flexibility like fixed removal efficiency definition for
-each target isotope defined in the object input file, Saltproc code now
-comprises `Sparging System package` that calculates removal efficiencies for
-various target isotopes (i.e., Xe, Kr, and H). To enable this feature, use
-the `"self"` command in the input file in the `"efficiency"` object names of
-Sparger and Separator components. Each component can be employed separately.
-An example is given below. In the example, capacity and mass flow rate are in
-`g/s` unit while volume is in `cm`:math:`^3` unit.
-
-"sparger": { "capacity": 9920000,
-			 "efficiency": "self",
-			 "mass_flowrate": 9920000,
-			 "volume": 10000000 },
-"entrainment_separator": { "capacity": 9920000,
-						   "efficiency": "self",
-						   "mass_flowrate": 9920000,
-						   "volume": 11 }
-
-The Future
------------
-
-A number of features will be implemented in SaltProc soon. Support of various
-depletion codes (e.g., OpenMC) will be added.
-
-
-.. warning::
-
-    SaltProc is a relatively new project and is still under heavy development.
-    Although we will make our best effort to maintain compatibility with the
-    current API, inevitably the API will change in future versions as SaltProc
-    matures.
diff --git a/v0.3.0/_sources/src/index.rst.txt b/v0.3.0/_sources/src/index.rst.txt
deleted file mode 100644
index f09f9d4c0..000000000
--- a/v0.3.0/_sources/src/index.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-SaltProc API
-=============
-
-This is automatically generated API documentation from SaltProc source files.
-
-Click the  "modules" (:ref:`modindex`) link to browse the modules.
-Or, dive right into the autogenerated :doc:`saltproc` docs.
diff --git a/v0.3.0/_sources/src/modules.rst.txt b/v0.3.0/_sources/src/modules.rst.txt
deleted file mode 100644
index 1da7d5d98..000000000
--- a/v0.3.0/_sources/src/modules.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc
-========
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc
diff --git a/v0.3.0/_sources/src/saltproc.app.rst.txt b/v0.3.0/_sources/src/saltproc.app.rst.txt
deleted file mode 100644
index a9b319fdd..000000000
--- a/v0.3.0/_sources/src/saltproc.app.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.app module
-===================
-
-.. automodule:: saltproc.app
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.depcode.rst.txt b/v0.3.0/_sources/src/saltproc.depcode.rst.txt
deleted file mode 100644
index 04ca7fc0b..000000000
--- a/v0.3.0/_sources/src/saltproc.depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.depcode module
-=======================
-
-.. automodule:: saltproc.depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.materialflow.rst.txt b/v0.3.0/_sources/src/saltproc.materialflow.rst.txt
deleted file mode 100644
index 31a768303..000000000
--- a/v0.3.0/_sources/src/saltproc.materialflow.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.materialflow module
-============================
-
-.. automodule:: saltproc.materialflow
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.process.rst.txt b/v0.3.0/_sources/src/saltproc.process.rst.txt
deleted file mode 100644
index 2ebcc3e14..000000000
--- a/v0.3.0/_sources/src/saltproc.process.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.process module
-=======================
-
-.. automodule:: saltproc.process
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.reactor.rst.txt b/v0.3.0/_sources/src/saltproc.reactor.rst.txt
deleted file mode 100644
index 07925c97a..000000000
--- a/v0.3.0/_sources/src/saltproc.reactor.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.reactor module
-=======================
-
-.. automodule:: saltproc.reactor
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.rst.txt b/v0.3.0/_sources/src/saltproc.rst.txt
deleted file mode 100644
index a7888ebbc..000000000
--- a/v0.3.0/_sources/src/saltproc.rst.txt
+++ /dev/null
@@ -1,34 +0,0 @@
-saltproc package
-================
-
-Subpackages
------------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.tests
-
-Submodules
-----------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.app
-   saltproc.depcode
-   saltproc.materialflow
-   saltproc.process
-   saltproc.reactor
-   saltproc.separator
-   saltproc.simulation
-   saltproc.sparger
-   saltproc.version
-
-Module contents
----------------
-
-.. automodule:: saltproc
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.separator.rst.txt b/v0.3.0/_sources/src/saltproc.separator.rst.txt
deleted file mode 100644
index 2228b690c..000000000
--- a/v0.3.0/_sources/src/saltproc.separator.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.separator module
-=========================
-
-.. automodule:: saltproc.separator
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.simulation.rst.txt b/v0.3.0/_sources/src/saltproc.simulation.rst.txt
deleted file mode 100644
index 7572435ea..000000000
--- a/v0.3.0/_sources/src/saltproc.simulation.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.simulation module
-==========================
-
-.. automodule:: saltproc.simulation
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.sparger.rst.txt b/v0.3.0/_sources/src/saltproc.sparger.rst.txt
deleted file mode 100644
index 5460a476c..000000000
--- a/v0.3.0/_sources/src/saltproc.sparger.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.sparger module
-=======================
-
-.. automodule:: saltproc.sparger
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.rst.txt b/v0.3.0/_sources/src/saltproc.tests.rst.txt
deleted file mode 100644
index 024331988..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.rst.txt
+++ /dev/null
@@ -1,24 +0,0 @@
-saltproc.tests package
-======================
-
-Submodules
-----------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.tests.test_app
-   saltproc.tests.test_depcode
-   saltproc.tests.test_materialflow
-   saltproc.tests.test_process
-   saltproc.tests.test_separator
-   saltproc.tests.test_simulation
-   saltproc.tests.test_sparger
-
-Module contents
----------------
-
-.. automodule:: saltproc.tests
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_app.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_app.rst.txt
deleted file mode 100644
index d7674c957..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_app.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_app module
-===============================
-
-.. automodule:: saltproc.tests.test_app
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_depcode.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_depcode.rst.txt
deleted file mode 100644
index 9f4918e71..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_depcode module
-===================================
-
-.. automodule:: saltproc.tests.test_depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_materialflow.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_materialflow.rst.txt
deleted file mode 100644
index 14e2e41c9..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_materialflow.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_materialflow module
-========================================
-
-.. automodule:: saltproc.tests.test_materialflow
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_process.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_process.rst.txt
deleted file mode 100644
index 5b6813db0..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_process.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_process module
-===================================
-
-.. automodule:: saltproc.tests.test_process
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_separator.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_separator.rst.txt
deleted file mode 100644
index 9481465f2..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_separator.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_separator module
-=====================================
-
-.. automodule:: saltproc.tests.test_separator
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_simulation.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_simulation.rst.txt
deleted file mode 100644
index 25aed9803..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_simulation.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_simulation module
-======================================
-
-.. automodule:: saltproc.tests.test_simulation
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.tests.test_sparger.rst.txt b/v0.3.0/_sources/src/saltproc.tests.test_sparger.rst.txt
deleted file mode 100644
index b475f4cf9..000000000
--- a/v0.3.0/_sources/src/saltproc.tests.test_sparger.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_sparger module
-===================================
-
-.. automodule:: saltproc.tests.test_sparger
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_sources/src/saltproc.version.rst.txt b/v0.3.0/_sources/src/saltproc.version.rst.txt
deleted file mode 100644
index 9d7ecdbdf..000000000
--- a/v0.3.0/_sources/src/saltproc.version.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.version module
-=======================
-
-.. automodule:: saltproc.version
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.3.0/_static/_sphinx_javascript_frameworks_compat.js b/v0.3.0/_static/_sphinx_javascript_frameworks_compat.js
deleted file mode 100644
index 8549469dc..000000000
--- a/v0.3.0/_static/_sphinx_javascript_frameworks_compat.js
+++ /dev/null
@@ -1,134 +0,0 @@
-/*
- * _sphinx_javascript_frameworks_compat.js
- * ~~~~~~~~~~
- *
- * Compatability shim for jQuery and underscores.js.
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format("woff2"),url(fonts/Roboto-Slab-Bold.woff?bed5564a116b05148e3b3bea6fb1162a) format("woff");font-display:block}
\ No newline at end of file
diff --git a/v0.3.0/_static/doctools.js b/v0.3.0/_static/doctools.js
deleted file mode 100644
index 527b876ca..000000000
--- a/v0.3.0/_static/doctools.js
+++ /dev/null
@@ -1,156 +0,0 @@
-/*
- * doctools.js
- * ~~~~~~~~~~~
- *
- * Base JavaScript utilities for all Sphinx HTML documentation.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-"use strict";
-
-const BLACKLISTED_KEY_CONTROL_ELEMENTS = new Set([
-  "TEXTAREA",
-  "INPUT",
-  "SELECT",
-  "BUTTON",
-]);
-
-const _ready = (callback) => {
-  if (document.readyState !== "loading") {
-    callback();
-  } else {
-    document.addEventListener("DOMContentLoaded", callback);
-  }
-};
-
-/**
- * Small JavaScript module for the documentation.
- */
-const Documentation = {
-  init: () => {
-    Documentation.initDomainIndexTable();
-    Documentation.initOnKeyListeners();
-  },
-
-  /**
-   * i18n support
-   */
-  TRANSLATIONS: {},
-  PLURAL_EXPR: (n) => (n === 1 ? 0 : 1),
-  LOCALE: "unknown",
-
-  // gettext and ngettext don't access this so that the functions
-  // can safely bound to a different name (_ = Documentation.gettext)
-  gettext: (string) => {
-    const translated = Documentation.TRANSLATIONS[string];
-    switch (typeof translated) {
-      case "undefined":
-        return string; // no translation
-      case "string":
-        return translated; // translation exists
-      default:
-        return translated[0]; // (singular, plural) translation tuple exists
-    }
-  },
-
-  ngettext: (singular, plural, n) => {
-    const translated = Documentation.TRANSLATIONS[singular];
-    if (typeof translated !== "undefined")
-      return translated[Documentation.PLURAL_EXPR(n)];
-    return n === 1 ? singular : plural;
-  },
-
-  addTranslations: (catalog) => {
-    Object.assign(Documentation.TRANSLATIONS, catalog.messages);
-    Documentation.PLURAL_EXPR = new Function(
-      "n",
-      `return (${catalog.plural_expr})`
-    );
-    Documentation.LOCALE = catalog.locale;
-  },
-
-  /**
-   * helper function to focus on search bar
-   */
-  focusSearchBar: () => {
-    document.querySelectorAll("input[name=q]")[0]?.focus();
-  },
-
-  /**
-   * Initialise the domain index toggle buttons
-   */
-  initDomainIndexTable: () => {
-    const toggler = (el) => {
-      const idNumber = el.id.substr(7);
-      const toggledRows = document.querySelectorAll(`tr.cg-${idNumber}`);
-      if (el.src.substr(-9) === "minus.png") {
-        el.src = `${el.src.substr(0, el.src.length - 9)}plus.png`;
-        toggledRows.forEach((el) => (el.style.display = "none"));
-      } else {
-        el.src = `${el.src.substr(0, el.src.length - 8)}minus.png`;
-        toggledRows.forEach((el) => (el.style.display = ""));
-      }
-    };
-
-    const togglerElements = document.querySelectorAll("img.toggler");
-    togglerElements.forEach((el) =>
-      el.addEventListener("click", (event) => toggler(event.currentTarget))
-    );
-    togglerElements.forEach((el) => (el.style.display = ""));
-    if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) togglerElements.forEach(toggler);
-  },
-
-  initOnKeyListeners: () => {
-    // only install a listener if it is really needed
-    if (
-      !DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS &&
-      !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS
-    )
-      return;
-
-    document.addEventListener("keydown", (event) => {
-      // bail for input elements
-      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
-      // bail with special keys
-      if (event.altKey || event.ctrlKey || event.metaKey) return;
-
-      if (!event.shiftKey) {
-        switch (event.key) {
-          case "ArrowLeft":
-            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
-
-            const prevLink = document.querySelector('link[rel="prev"]');
-            if (prevLink && prevLink.href) {
-              window.location.href = prevLink.href;
-              event.preventDefault();
-            }
-            break;
-          case "ArrowRight":
-            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
-
-            const nextLink = document.querySelector('link[rel="next"]');
-            if (nextLink && nextLink.href) {
-              window.location.href = nextLink.href;
-              event.preventDefault();
-            }
-            break;
-        }
-      }
-
-      // some keyboard layouts may need Shift to get /
-      switch (event.key) {
-        case "/":
-          if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) break;
-          Documentation.focusSearchBar();
-          event.preventDefault();
-      }
-    });
-  },
-};
-
-// quick alias for translations
-const _ = Documentation.gettext;
-
-_ready(Documentation.init);
diff --git a/v0.3.0/_static/documentation_options.js b/v0.3.0/_static/documentation_options.js
deleted file mode 100644
index b57ae3b83..000000000
--- a/v0.3.0/_static/documentation_options.js
+++ /dev/null
@@ -1,14 +0,0 @@
-var DOCUMENTATION_OPTIONS = {
-    URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '',
-    LANGUAGE: 'en',
-    COLLAPSE_INDEX: false,
-    BUILDER: 'html',
-    FILE_SUFFIX: '.html',
-    LINK_SUFFIX: '.html',
-    HAS_SOURCE: true,
-    SOURCELINK_SUFFIX: '.txt',
-    NAVIGATION_WITH_KEYS: false,
-    SHOW_SEARCH_SUMMARY: true,
-    ENABLE_SEARCH_SHORTCUTS: true,
-};
\ No newline at end of file
diff --git a/v0.3.0/_static/file.png b/v0.3.0/_static/file.png
deleted file mode 100644
index a858a410e..000000000
Binary files a/v0.3.0/_static/file.png and /dev/null differ
diff --git a/v0.3.0/_static/jquery-3.6.0.js b/v0.3.0/_static/jquery-3.6.0.js
deleted file mode 100644
index fc6c299b7..000000000
--- a/v0.3.0/_static/jquery-3.6.0.js
+++ /dev/null
@@ -1,10881 +0,0 @@
-/*!
- * jQuery JavaScript Library v3.6.0
- * https://jquery.com/
- *
- * Includes Sizzle.js
- * https://sizzlejs.com/
- *
- * Copyright OpenJS Foundation and other contributors
- * Released under the MIT license
- * https://jquery.org/license
- *
- * Date: 2021-03-02T17:08Z
- */
-( function( global, factory ) {
-
-	"use strict";
-
-	if ( typeof module === "object" && typeof module.exports === "object" ) {
-
-		// For CommonJS and CommonJS-like environments where a proper `window`
-		// is present, execute the factory and get jQuery.
-		// For environments that do not have a `window` with a `document`
-		// (such as Node.js), expose a factory as module.exports.
-		// This accentuates the need for the creation of a real `window`.
-		// e.g. var jQuery = require("jquery")(window);
-		// See ticket #14549 for more info.
-		module.exports = global.document ?
-			factory( global, true ) :
-			function( w ) {
-				if ( !w.document ) {
-					throw new Error( "jQuery requires a window with a document" );
-				}
-				return factory( w );
-			};
-	} else {
-		factory( global );
-	}
-
-// Pass this if window is not defined yet
-} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) {
-
-// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1
-// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode
-// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common
-// enough that all such attempts are guarded in a try block.
-"use strict";
-
-var arr = [];
-
-var getProto = Object.getPrototypeOf;
-
-var slice = arr.slice;
-
-var flat = arr.flat ? function( array ) {
-	return arr.flat.call( array );
-} : function( array ) {
-	return arr.concat.apply( [], array );
-};
-
-
-var push = arr.push;
-
-var indexOf = arr.indexOf;
-
-var class2type = {};
-
-var toString = class2type.toString;
-
-var hasOwn = class2type.hasOwnProperty;
-
-var fnToString = hasOwn.toString;
-
-var ObjectFunctionString = fnToString.call( Object );
-
-var support = {};
-
-var isFunction = function isFunction( obj ) {
-
-		// Support: Chrome <=57, Firefox <=52
-		// In some browsers, typeof returns "function" for HTML <object> elements
-		// (i.e., `typeof document.createElement( "object" ) === "function"`).
-		// We don't want to classify *any* DOM node as a function.
-		// Support: QtWeb <=3.8.5, WebKit <=534.34, wkhtmltopdf tool <=0.12.5
-		// Plus for old WebKit, typeof returns "function" for HTML collections
-		// (e.g., `typeof document.getElementsByTagName("div") === "function"`). (gh-4756)
-		return typeof obj === "function" && typeof obj.nodeType !== "number" &&
-			typeof obj.item !== "function";
-	};
-
-
-var isWindow = function isWindow( obj ) {
-		return obj != null && obj === obj.window;
-	};
-
-
-var document = window.document;
-
-
-
-	var preservedScriptAttributes = {
-		type: true,
-		src: true,
-		nonce: true,
-		noModule: true
-	};
-
-	function DOMEval( code, node, doc ) {
-		doc = doc || document;
-
-		var i, val,
-			script = doc.createElement( "script" );
-
-		script.text = code;
-		if ( node ) {
-			for ( i in preservedScriptAttributes ) {
-
-				// Support: Firefox 64+, Edge 18+
-				// Some browsers don't support the "nonce" property on scripts.
-				// On the other hand, just using `getAttribute` is not enough as
-				// the `nonce` attribute is reset to an empty string whenever it
-				// becomes browsing-context connected.
-				// See https://github.com/whatwg/html/issues/2369
-				// See https://html.spec.whatwg.org/#nonce-attributes
-				// The `node.getAttribute` check was added for the sake of
-				// `jQuery.globalEval` so that it can fake a nonce-containing node
-				// via an object.
-				val = node[ i ] || node.getAttribute && node.getAttribute( i );
-				if ( val ) {
-					script.setAttribute( i, val );
-				}
-			}
-		}
-		doc.head.appendChild( script ).parentNode.removeChild( script );
-	}
-
-
-function toType( obj ) {
-	if ( obj == null ) {
-		return obj + "";
-	}
-
-	// Support: Android <=2.3 only (functionish RegExp)
-	return typeof obj === "object" || typeof obj === "function" ?
-		class2type[ toString.call( obj ) ] || "object" :
-		typeof obj;
-}
-/* global Symbol */
-// Defining this global in .eslintrc.json would create a danger of using the global
-// unguarded in another place, it seems safer to define global only for this module
-
-
-
-var
-	version = "3.6.0",
-
-	// Define a local copy of jQuery
-	jQuery = function( selector, context ) {
-
-		// The jQuery object is actually just the init constructor 'enhanced'
-		// Need init if jQuery is called (just allow error to be thrown if not included)
-		return new jQuery.fn.init( selector, context );
-	};
-
-jQuery.fn = jQuery.prototype = {
-
-	// The current version of jQuery being used
-	jquery: version,
-
-	constructor: jQuery,
-
-	// The default length of a jQuery object is 0
-	length: 0,
-
-	toArray: function() {
-		return slice.call( this );
-	},
-
-	// Get the Nth element in the matched element set OR
-	// Get the whole matched element set as a clean array
-	get: function( num ) {
-
-		// Return all the elements in a clean array
-		if ( num == null ) {
-			return slice.call( this );
-		}
-
-		// Return just the one element from the set
-		return num < 0 ? this[ num + this.length ] : this[ num ];
-	},
-
-	// Take an array of elements and push it onto the stack
-	// (returning the new matched element set)
-	pushStack: function( elems ) {
-
-		// Build a new jQuery matched element set
-		var ret = jQuery.merge( this.constructor(), elems );
-
-		// Add the old object onto the stack (as a reference)
-		ret.prevObject = this;
-
-		// Return the newly-formed element set
-		return ret;
-	},
-
-	// Execute a callback for every element in the matched set.
-	each: function( callback ) {
-		return jQuery.each( this, callback );
-	},
-
-	map: function( callback ) {
-		return this.pushStack( jQuery.map( this, function( elem, i ) {
-			return callback.call( elem, i, elem );
-		} ) );
-	},
-
-	slice: function() {
-		return this.pushStack( slice.apply( this, arguments ) );
-	},
-
-	first: function() {
-		return this.eq( 0 );
-	},
-
-	last: function() {
-		return this.eq( -1 );
-	},
-
-	even: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return ( i + 1 ) % 2;
-		} ) );
-	},
-
-	odd: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return i % 2;
-		} ) );
-	},
-
-	eq: function( i ) {
-		var len = this.length,
-			j = +i + ( i < 0 ? len : 0 );
-		return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] );
-	},
-
-	end: function() {
-		return this.prevObject || this.constructor();
-	},
-
-	// For internal use only.
-	// Behaves like an Array's method, not like a jQuery method.
-	push: push,
-	sort: arr.sort,
-	splice: arr.splice
-};
-
-jQuery.extend = jQuery.fn.extend = function() {
-	var options, name, src, copy, copyIsArray, clone,
-		target = arguments[ 0 ] || {},
-		i = 1,
-		length = arguments.length,
-		deep = false;
-
-	// Handle a deep copy situation
-	if ( typeof target === "boolean" ) {
-		deep = target;
-
-		// Skip the boolean and the target
-		target = arguments[ i ] || {};
-		i++;
-	}
-
-	// Handle case when target is a string or something (possible in deep copy)
-	if ( typeof target !== "object" && !isFunction( target ) ) {
-		target = {};
-	}
-
-	// Extend jQuery itself if only one argument is passed
-	if ( i === length ) {
-		target = this;
-		i--;
-	}
-
-	for ( ; i < length; i++ ) {
-
-		// Only deal with non-null/undefined values
-		if ( ( options = arguments[ i ] ) != null ) {
-
-			// Extend the base object
-			for ( name in options ) {
-				copy = options[ name ];
-
-				// Prevent Object.prototype pollution
-				// Prevent never-ending loop
-				if ( name === "__proto__" || target === copy ) {
-					continue;
-				}
-
-				// Recurse if we're merging plain objects or arrays
-				if ( deep && copy && ( jQuery.isPlainObject( copy ) ||
-					( copyIsArray = Array.isArray( copy ) ) ) ) {
-					src = target[ name ];
-
-					// Ensure proper type for the source value
-					if ( copyIsArray && !Array.isArray( src ) ) {
-						clone = [];
-					} else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) {
-						clone = {};
-					} else {
-						clone = src;
-					}
-					copyIsArray = false;
-
-					// Never move original objects, clone them
-					target[ name ] = jQuery.extend( deep, clone, copy );
-
-				// Don't bring in undefined values
-				} else if ( copy !== undefined ) {
-					target[ name ] = copy;
-				}
-			}
-		}
-	}
-
-	// Return the modified object
-	return target;
-};
-
-jQuery.extend( {
-
-	// Unique for each copy of jQuery on the page
-	expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ),
-
-	// Assume jQuery is ready without the ready module
-	isReady: true,
-
-	error: function( msg ) {
-		throw new Error( msg );
-	},
-
-	noop: function() {},
-
-	isPlainObject: function( obj ) {
-		var proto, Ctor;
-
-		// Detect obvious negatives
-		// Use toString instead of jQuery.type to catch host objects
-		if ( !obj || toString.call( obj ) !== "[object Object]" ) {
-			return false;
-		}
-
-		proto = getProto( obj );
-
-		// Objects with no prototype (e.g., `Object.create( null )`) are plain
-		if ( !proto ) {
-			return true;
-		}
-
-		// Objects with prototype are plain iff they were constructed by a global Object function
-		Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor;
-		return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString;
-	},
-
-	isEmptyObject: function( obj ) {
-		var name;
-
-		for ( name in obj ) {
-			return false;
-		}
-		return true;
-	},
-
-	// Evaluates a script in a provided context; falls back to the global one
-	// if not specified.
-	globalEval: function( code, options, doc ) {
-		DOMEval( code, { nonce: options && options.nonce }, doc );
-	},
-
-	each: function( obj, callback ) {
-		var length, i = 0;
-
-		if ( isArrayLike( obj ) ) {
-			length = obj.length;
-			for ( ; i < length; i++ ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		} else {
-			for ( i in obj ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		}
-
-		return obj;
-	},
-
-	// results is for internal usage only
-	makeArray: function( arr, results ) {
-		var ret = results || [];
-
-		if ( arr != null ) {
-			if ( isArrayLike( Object( arr ) ) ) {
-				jQuery.merge( ret,
-					typeof arr === "string" ?
-						[ arr ] : arr
-				);
-			} else {
-				push.call( ret, arr );
-			}
-		}
-
-		return ret;
-	},
-
-	inArray: function( elem, arr, i ) {
-		return arr == null ? -1 : indexOf.call( arr, elem, i );
-	},
-
-	// Support: Android <=4.0 only, PhantomJS 1 only
-	// push.apply(_, arraylike) throws on ancient WebKit
-	merge: function( first, second ) {
-		var len = +second.length,
-			j = 0,
-			i = first.length;
-
-		for ( ; j < len; j++ ) {
-			first[ i++ ] = second[ j ];
-		}
-
-		first.length = i;
-
-		return first;
-	},
-
-	grep: function( elems, callback, invert ) {
-		var callbackInverse,
-			matches = [],
-			i = 0,
-			length = elems.length,
-			callbackExpect = !invert;
-
-		// Go through the array, only saving the items
-		// that pass the validator function
-		for ( ; i < length; i++ ) {
-			callbackInverse = !callback( elems[ i ], i );
-			if ( callbackInverse !== callbackExpect ) {
-				matches.push( elems[ i ] );
-			}
-		}
-
-		return matches;
-	},
-
-	// arg is for internal usage only
-	map: function( elems, callback, arg ) {
-		var length, value,
-			i = 0,
-			ret = [];
-
-		// Go through the array, translating each of the items to their new values
-		if ( isArrayLike( elems ) ) {
-			length = elems.length;
-			for ( ; i < length; i++ ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-
-		// Go through every key on the object,
-		} else {
-			for ( i in elems ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-		}
-
-		// Flatten any nested arrays
-		return flat( ret );
-	},
-
-	// A global GUID counter for objects
-	guid: 1,
-
-	// jQuery.support is not used in Core but other projects attach their
-	// properties to it so it needs to exist.
-	support: support
-} );
-
-if ( typeof Symbol === "function" ) {
-	jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ];
-}
-
-// Populate the class2type map
-jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ),
-	function( _i, name ) {
-		class2type[ "[object " + name + "]" ] = name.toLowerCase();
-	} );
-
-function isArrayLike( obj ) {
-
-	// Support: real iOS 8.2 only (not reproducible in simulator)
-	// `in` check used to prevent JIT error (gh-2145)
-	// hasOwn isn't used here due to false negatives
-	// regarding Nodelist length in IE
-	var length = !!obj && "length" in obj && obj.length,
-		type = toType( obj );
-
-	if ( isFunction( obj ) || isWindow( obj ) ) {
-		return false;
-	}
-
-	return type === "array" || length === 0 ||
-		typeof length === "number" && length > 0 && ( length - 1 ) in obj;
-}
-var Sizzle =
-/*!
- * Sizzle CSS Selector Engine v2.3.6
- * https://sizzlejs.com/
- *
- * Copyright JS Foundation and other contributors
- * Released under the MIT license
- * https://js.foundation/
- *
- * Date: 2021-02-16
- */
-( function( window ) {
-var i,
-	support,
-	Expr,
-	getText,
-	isXML,
-	tokenize,
-	compile,
-	select,
-	outermostContext,
-	sortInput,
-	hasDuplicate,
-
-	// Local document vars
-	setDocument,
-	document,
-	docElem,
-	documentIsHTML,
-	rbuggyQSA,
-	rbuggyMatches,
-	matches,
-	contains,
-
-	// Instance-specific data
-	expando = "sizzle" + 1 * new Date(),
-	preferredDoc = window.document,
-	dirruns = 0,
-	done = 0,
-	classCache = createCache(),
-	tokenCache = createCache(),
-	compilerCache = createCache(),
-	nonnativeSelectorCache = createCache(),
-	sortOrder = function( a, b ) {
-		if ( a === b ) {
-			hasDuplicate = true;
-		}
-		return 0;
-	},
-
-	// Instance methods
-	hasOwn = ( {} ).hasOwnProperty,
-	arr = [],
-	pop = arr.pop,
-	pushNative = arr.push,
-	push = arr.push,
-	slice = arr.slice,
-
-	// Use a stripped-down indexOf as it's faster than native
-	// https://jsperf.com/thor-indexof-vs-for/5
-	indexOf = function( list, elem ) {
-		var i = 0,
-			len = list.length;
-		for ( ; i < len; i++ ) {
-			if ( list[ i ] === elem ) {
-				return i;
-			}
-		}
-		return -1;
-	},
-
-	booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" +
-		"ismap|loop|multiple|open|readonly|required|scoped",
-
-	// Regular expressions
-
-	// http://www.w3.org/TR/css3-selectors/#whitespace
-	whitespace = "[\\x20\\t\\r\\n\\f]",
-
-	// https://www.w3.org/TR/css-syntax-3/#ident-token-diagram
-	identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace +
-		"?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+",
-
-	// Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors
-	attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace +
-
-		// Operator (capture 2)
-		"*([*^$|!~]?=)" + whitespace +
-
-		// "Attribute values must be CSS identifiers [capture 5]
-		// or strings [capture 3 or capture 4]"
-		"*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" +
-		whitespace + "*\\]",
-
-	pseudos = ":(" + identifier + ")(?:\\((" +
-
-		// To reduce the number of selectors needing tokenize in the preFilter, prefer arguments:
-		// 1. quoted (capture 3; capture 4 or capture 5)
-		"('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" +
-
-		// 2. simple (capture 6)
-		"((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" +
-
-		// 3. anything else (capture 2)
-		".*" +
-		")\\)|)",
-
-	// Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter
-	rwhitespace = new RegExp( whitespace + "+", "g" ),
-	rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" +
-		whitespace + "+$", "g" ),
-
-	rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ),
-	rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace +
-		"*" ),
-	rdescend = new RegExp( whitespace + "|>" ),
-
-	rpseudo = new RegExp( pseudos ),
-	ridentifier = new RegExp( "^" + identifier + "$" ),
-
-	matchExpr = {
-		"ID": new RegExp( "^#(" + identifier + ")" ),
-		"CLASS": new RegExp( "^\\.(" + identifier + ")" ),
-		"TAG": new RegExp( "^(" + identifier + "|[*])" ),
-		"ATTR": new RegExp( "^" + attributes ),
-		"PSEUDO": new RegExp( "^" + pseudos ),
-		"CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" +
-			whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" +
-			whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ),
-		"bool": new RegExp( "^(?:" + booleans + ")$", "i" ),
-
-		// For use in libraries implementing .is()
-		// We use this for POS matching in `select`
-		"needsContext": new RegExp( "^" + whitespace +
-			"*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace +
-			"*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" )
-	},
-
-	rhtml = /HTML$/i,
-	rinputs = /^(?:input|select|textarea|button)$/i,
-	rheader = /^h\d$/i,
-
-	rnative = /^[^{]+\{\s*\[native \w/,
-
-	// Easily-parseable/retrievable ID or TAG or CLASS selectors
-	rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/,
-
-	rsibling = /[+~]/,
-
-	// CSS escapes
-	// http://www.w3.org/TR/CSS21/syndata.html#escaped-characters
-	runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ),
-	funescape = function( escape, nonHex ) {
-		var high = "0x" + escape.slice( 1 ) - 0x10000;
-
-		return nonHex ?
-
-			// Strip the backslash prefix from a non-hex escape sequence
-			nonHex :
-
-			// Replace a hexadecimal escape sequence with the encoded Unicode code point
-			// Support: IE <=11+
-			// For values outside the Basic Multilingual Plane (BMP), manually construct a
-			// surrogate pair
-			high < 0 ?
-				String.fromCharCode( high + 0x10000 ) :
-				String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 );
-	},
-
-	// CSS string/identifier serialization
-	// https://drafts.csswg.org/cssom/#common-serializing-idioms
-	rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g,
-	fcssescape = function( ch, asCodePoint ) {
-		if ( asCodePoint ) {
-
-			// U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER
-			if ( ch === "\0" ) {
-				return "\uFFFD";
-			}
-
-			// Control characters and (dependent upon position) numbers get escaped as code points
-			return ch.slice( 0, -1 ) + "\\" +
-				ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " ";
-		}
-
-		// Other potentially-special ASCII characters get backslash-escaped
-		return "\\" + ch;
-	},
-
-	// Used for iframes
-	// See setDocument()
-	// Removing the function wrapper causes a "Permission Denied"
-	// error in IE
-	unloadHandler = function() {
-		setDocument();
-	},
-
-	inDisabledFieldset = addCombinator(
-		function( elem ) {
-			return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset";
-		},
-		{ dir: "parentNode", next: "legend" }
-	);
-
-// Optimize for push.apply( _, NodeList )
-try {
-	push.apply(
-		( arr = slice.call( preferredDoc.childNodes ) ),
-		preferredDoc.childNodes
-	);
-
-	// Support: Android<4.0
-	// Detect silently failing push.apply
-	// eslint-disable-next-line no-unused-expressions
-	arr[ preferredDoc.childNodes.length ].nodeType;
-} catch ( e ) {
-	push = { apply: arr.length ?
-
-		// Leverage slice if possible
-		function( target, els ) {
-			pushNative.apply( target, slice.call( els ) );
-		} :
-
-		// Support: IE<9
-		// Otherwise append directly
-		function( target, els ) {
-			var j = target.length,
-				i = 0;
-
-			// Can't trust NodeList.length
-			while ( ( target[ j++ ] = els[ i++ ] ) ) {}
-			target.length = j - 1;
-		}
-	};
-}
-
-function Sizzle( selector, context, results, seed ) {
-	var m, i, elem, nid, match, groups, newSelector,
-		newContext = context && context.ownerDocument,
-
-		// nodeType defaults to 9, since context defaults to document
-		nodeType = context ? context.nodeType : 9;
-
-	results = results || [];
-
-	// Return early from calls with invalid selector or context
-	if ( typeof selector !== "string" || !selector ||
-		nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) {
-
-		return results;
-	}
-
-	// Try to shortcut find operations (as opposed to filters) in HTML documents
-	if ( !seed ) {
-		setDocument( context );
-		context = context || document;
-
-		if ( documentIsHTML ) {
-
-			// If the selector is sufficiently simple, try using a "get*By*" DOM method
-			// (excepting DocumentFragment context, where the methods don't exist)
-			if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) {
-
-				// ID selector
-				if ( ( m = match[ 1 ] ) ) {
-
-					// Document context
-					if ( nodeType === 9 ) {
-						if ( ( elem = context.getElementById( m ) ) ) {
-
-							// Support: IE, Opera, Webkit
-							// TODO: identify versions
-							// getElementById can match elements by name instead of ID
-							if ( elem.id === m ) {
-								results.push( elem );
-								return results;
-							}
-						} else {
-							return results;
-						}
-
-					// Element context
-					} else {
-
-						// Support: IE, Opera, Webkit
-						// TODO: identify versions
-						// getElementById can match elements by name instead of ID
-						if ( newContext && ( elem = newContext.getElementById( m ) ) &&
-							contains( context, elem ) &&
-							elem.id === m ) {
-
-							results.push( elem );
-							return results;
-						}
-					}
-
-				// Type selector
-				} else if ( match[ 2 ] ) {
-					push.apply( results, context.getElementsByTagName( selector ) );
-					return results;
-
-				// Class selector
-				} else if ( ( m = match[ 3 ] ) && support.getElementsByClassName &&
-					context.getElementsByClassName ) {
-
-					push.apply( results, context.getElementsByClassName( m ) );
-					return results;
-				}
-			}
-
-			// Take advantage of querySelectorAll
-			if ( support.qsa &&
-				!nonnativeSelectorCache[ selector + " " ] &&
-				( !rbuggyQSA || !rbuggyQSA.test( selector ) ) &&
-
-				// Support: IE 8 only
-				// Exclude object elements
-				( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) {
-
-				newSelector = selector;
-				newContext = context;
-
-				// qSA considers elements outside a scoping root when evaluating child or
-				// descendant combinators, which is not what we want.
-				// In such cases, we work around the behavior by prefixing every selector in the
-				// list with an ID selector referencing the scope context.
-				// The technique has to be used as well when a leading combinator is used
-				// as such selectors are not recognized by querySelectorAll.
-				// Thanks to Andrew Dupont for this technique.
-				if ( nodeType === 1 &&
-					( rdescend.test( selector ) || rcombinators.test( selector ) ) ) {
-
-					// Expand context for sibling selectors
-					newContext = rsibling.test( selector ) && testContext( context.parentNode ) ||
-						context;
-
-					// We can use :scope instead of the ID hack if the browser
-					// supports it & if we're not changing the context.
-					if ( newContext !== context || !support.scope ) {
-
-						// Capture the context ID, setting it first if necessary
-						if ( ( nid = context.getAttribute( "id" ) ) ) {
-							nid = nid.replace( rcssescape, fcssescape );
-						} else {
-							context.setAttribute( "id", ( nid = expando ) );
-						}
-					}
-
-					// Prefix every selector in the list
-					groups = tokenize( selector );
-					i = groups.length;
-					while ( i-- ) {
-						groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " +
-							toSelector( groups[ i ] );
-					}
-					newSelector = groups.join( "," );
-				}
-
-				try {
-					push.apply( results,
-						newContext.querySelectorAll( newSelector )
-					);
-					return results;
-				} catch ( qsaError ) {
-					nonnativeSelectorCache( selector, true );
-				} finally {
-					if ( nid === expando ) {
-						context.removeAttribute( "id" );
-					}
-				}
-			}
-		}
-	}
-
-	// All others
-	return select( selector.replace( rtrim, "$1" ), context, results, seed );
-}
-
-/**
- * Create key-value caches of limited size
- * @returns {function(string, object)} Returns the Object data after storing it on itself with
- *	property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength)
- *	deleting the oldest entry
- */
-function createCache() {
-	var keys = [];
-
-	function cache( key, value ) {
-
-		// Use (key + " ") to avoid collision with native prototype properties (see Issue #157)
-		if ( keys.push( key + " " ) > Expr.cacheLength ) {
-
-			// Only keep the most recent entries
-			delete cache[ keys.shift() ];
-		}
-		return ( cache[ key + " " ] = value );
-	}
-	return cache;
-}
-
-/**
- * Mark a function for special use by Sizzle
- * @param {Function} fn The function to mark
- */
-function markFunction( fn ) {
-	fn[ expando ] = true;
-	return fn;
-}
-
-/**
- * Support testing using an element
- * @param {Function} fn Passed the created element and returns a boolean result
- */
-function assert( fn ) {
-	var el = document.createElement( "fieldset" );
-
-	try {
-		return !!fn( el );
-	} catch ( e ) {
-		return false;
-	} finally {
-
-		// Remove from its parent by default
-		if ( el.parentNode ) {
-			el.parentNode.removeChild( el );
-		}
-
-		// release memory in IE
-		el = null;
-	}
-}
-
-/**
- * Adds the same handler for all of the specified attrs
- * @param {String} attrs Pipe-separated list of attributes
- * @param {Function} handler The method that will be applied
- */
-function addHandle( attrs, handler ) {
-	var arr = attrs.split( "|" ),
-		i = arr.length;
-
-	while ( i-- ) {
-		Expr.attrHandle[ arr[ i ] ] = handler;
-	}
-}
-
-/**
- * Checks document order of two siblings
- * @param {Element} a
- * @param {Element} b
- * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b
- */
-function siblingCheck( a, b ) {
-	var cur = b && a,
-		diff = cur && a.nodeType === 1 && b.nodeType === 1 &&
-			a.sourceIndex - b.sourceIndex;
-
-	// Use IE sourceIndex if available on both nodes
-	if ( diff ) {
-		return diff;
-	}
-
-	// Check if b follows a
-	if ( cur ) {
-		while ( ( cur = cur.nextSibling ) ) {
-			if ( cur === b ) {
-				return -1;
-			}
-		}
-	}
-
-	return a ? 1 : -1;
-}
-
-/**
- * Returns a function to use in pseudos for input types
- * @param {String} type
- */
-function createInputPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return name === "input" && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for buttons
- * @param {String} type
- */
-function createButtonPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return ( name === "input" || name === "button" ) && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for :enabled/:disabled
- * @param {Boolean} disabled true for :disabled; false for :enabled
- */
-function createDisabledPseudo( disabled ) {
-
-	// Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable
-	return function( elem ) {
-
-		// Only certain elements can match :enabled or :disabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled
-		if ( "form" in elem ) {
-
-			// Check for inherited disabledness on relevant non-disabled elements:
-			// * listed form-associated elements in a disabled fieldset
-			//   https://html.spec.whatwg.org/multipage/forms.html#category-listed
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled
-			// * option elements in a disabled optgroup
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled
-			// All such elements have a "form" property.
-			if ( elem.parentNode && elem.disabled === false ) {
-
-				// Option elements defer to a parent optgroup if present
-				if ( "label" in elem ) {
-					if ( "label" in elem.parentNode ) {
-						return elem.parentNode.disabled === disabled;
-					} else {
-						return elem.disabled === disabled;
-					}
-				}
-
-				// Support: IE 6 - 11
-				// Use the isDisabled shortcut property to check for disabled fieldset ancestors
-				return elem.isDisabled === disabled ||
-
-					// Where there is no isDisabled, check manually
-					/* jshint -W018 */
-					elem.isDisabled !== !disabled &&
-					inDisabledFieldset( elem ) === disabled;
-			}
-
-			return elem.disabled === disabled;
-
-		// Try to winnow out elements that can't be disabled before trusting the disabled property.
-		// Some victims get caught in our net (label, legend, menu, track), but it shouldn't
-		// even exist on them, let alone have a boolean value.
-		} else if ( "label" in elem ) {
-			return elem.disabled === disabled;
-		}
-
-		// Remaining elements are neither :enabled nor :disabled
-		return false;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for positionals
- * @param {Function} fn
- */
-function createPositionalPseudo( fn ) {
-	return markFunction( function( argument ) {
-		argument = +argument;
-		return markFunction( function( seed, matches ) {
-			var j,
-				matchIndexes = fn( [], seed.length, argument ),
-				i = matchIndexes.length;
-
-			// Match elements found at the specified indexes
-			while ( i-- ) {
-				if ( seed[ ( j = matchIndexes[ i ] ) ] ) {
-					seed[ j ] = !( matches[ j ] = seed[ j ] );
-				}
-			}
-		} );
-	} );
-}
-
-/**
- * Checks a node for validity as a Sizzle context
- * @param {Element|Object=} context
- * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value
- */
-function testContext( context ) {
-	return context && typeof context.getElementsByTagName !== "undefined" && context;
-}
-
-// Expose support vars for convenience
-support = Sizzle.support = {};
-
-/**
- * Detects XML nodes
- * @param {Element|Object} elem An element or a document
- * @returns {Boolean} True iff elem is a non-HTML XML node
- */
-isXML = Sizzle.isXML = function( elem ) {
-	var namespace = elem && elem.namespaceURI,
-		docElem = elem && ( elem.ownerDocument || elem ).documentElement;
-
-	// Support: IE <=8
-	// Assume HTML when documentElement doesn't yet exist, such as inside loading iframes
-	// https://bugs.jquery.com/ticket/4833
-	return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" );
-};
-
-/**
- * Sets document-related variables once based on the current document
- * @param {Element|Object} [doc] An element or document object to use to set the document
- * @returns {Object} Returns the current document
- */
-setDocument = Sizzle.setDocument = function( node ) {
-	var hasCompare, subWindow,
-		doc = node ? node.ownerDocument || node : preferredDoc;
-
-	// Return early if doc is invalid or already selected
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) {
-		return document;
-	}
-
-	// Update global variables
-	document = doc;
-	docElem = document.documentElement;
-	documentIsHTML = !isXML( document );
-
-	// Support: IE 9 - 11+, Edge 12 - 18+
-	// Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936)
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( preferredDoc != document &&
-		( subWindow = document.defaultView ) && subWindow.top !== subWindow ) {
-
-		// Support: IE 11, Edge
-		if ( subWindow.addEventListener ) {
-			subWindow.addEventListener( "unload", unloadHandler, false );
-
-		// Support: IE 9 - 10 only
-		} else if ( subWindow.attachEvent ) {
-			subWindow.attachEvent( "onunload", unloadHandler );
-		}
-	}
-
-	// Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only,
-	// Safari 4 - 5 only, Opera <=11.6 - 12.x only
-	// IE/Edge & older browsers don't support the :scope pseudo-class.
-	// Support: Safari 6.0 only
-	// Safari 6.0 supports :scope but it's an alias of :root there.
-	support.scope = assert( function( el ) {
-		docElem.appendChild( el ).appendChild( document.createElement( "div" ) );
-		return typeof el.querySelectorAll !== "undefined" &&
-			!el.querySelectorAll( ":scope fieldset div" ).length;
-	} );
-
-	/* Attributes
-	---------------------------------------------------------------------- */
-
-	// Support: IE<8
-	// Verify that getAttribute really returns attributes and not properties
-	// (excepting IE8 booleans)
-	support.attributes = assert( function( el ) {
-		el.className = "i";
-		return !el.getAttribute( "className" );
-	} );
-
-	/* getElement(s)By*
-	---------------------------------------------------------------------- */
-
-	// Check if getElementsByTagName("*") returns only elements
-	support.getElementsByTagName = assert( function( el ) {
-		el.appendChild( document.createComment( "" ) );
-		return !el.getElementsByTagName( "*" ).length;
-	} );
-
-	// Support: IE<9
-	support.getElementsByClassName = rnative.test( document.getElementsByClassName );
-
-	// Support: IE<10
-	// Check if getElementById returns elements by name
-	// The broken getElementById methods don't pick up programmatically-set names,
-	// so use a roundabout getElementsByName test
-	support.getById = assert( function( el ) {
-		docElem.appendChild( el ).id = expando;
-		return !document.getElementsByName || !document.getElementsByName( expando ).length;
-	} );
-
-	// ID filter and find
-	if ( support.getById ) {
-		Expr.filter[ "ID" ] = function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				return elem.getAttribute( "id" ) === attrId;
-			};
-		};
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var elem = context.getElementById( id );
-				return elem ? [ elem ] : [];
-			}
-		};
-	} else {
-		Expr.filter[ "ID" ] =  function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				var node = typeof elem.getAttributeNode !== "undefined" &&
-					elem.getAttributeNode( "id" );
-				return node && node.value === attrId;
-			};
-		};
-
-		// Support: IE 6 - 7 only
-		// getElementById is not reliable as a find shortcut
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var node, i, elems,
-					elem = context.getElementById( id );
-
-				if ( elem ) {
-
-					// Verify the id attribute
-					node = elem.getAttributeNode( "id" );
-					if ( node && node.value === id ) {
-						return [ elem ];
-					}
-
-					// Fall back on getElementsByName
-					elems = context.getElementsByName( id );
-					i = 0;
-					while ( ( elem = elems[ i++ ] ) ) {
-						node = elem.getAttributeNode( "id" );
-						if ( node && node.value === id ) {
-							return [ elem ];
-						}
-					}
-				}
-
-				return [];
-			}
-		};
-	}
-
-	// Tag
-	Expr.find[ "TAG" ] = support.getElementsByTagName ?
-		function( tag, context ) {
-			if ( typeof context.getElementsByTagName !== "undefined" ) {
-				return context.getElementsByTagName( tag );
-
-			// DocumentFragment nodes don't have gEBTN
-			} else if ( support.qsa ) {
-				return context.querySelectorAll( tag );
-			}
-		} :
-
-		function( tag, context ) {
-			var elem,
-				tmp = [],
-				i = 0,
-
-				// By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too
-				results = context.getElementsByTagName( tag );
-
-			// Filter out possible comments
-			if ( tag === "*" ) {
-				while ( ( elem = results[ i++ ] ) ) {
-					if ( elem.nodeType === 1 ) {
-						tmp.push( elem );
-					}
-				}
-
-				return tmp;
-			}
-			return results;
-		};
-
-	// Class
-	Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) {
-		if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) {
-			return context.getElementsByClassName( className );
-		}
-	};
-
-	/* QSA/matchesSelector
-	---------------------------------------------------------------------- */
-
-	// QSA and matchesSelector support
-
-	// matchesSelector(:active) reports false when true (IE9/Opera 11.5)
-	rbuggyMatches = [];
-
-	// qSa(:focus) reports false when true (Chrome 21)
-	// We allow this because of a bug in IE8/9 that throws an error
-	// whenever `document.activeElement` is accessed on an iframe
-	// So, we allow :focus to pass through QSA all the time to avoid the IE error
-	// See https://bugs.jquery.com/ticket/13378
-	rbuggyQSA = [];
-
-	if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) {
-
-		// Build QSA regex
-		// Regex strategy adopted from Diego Perini
-		assert( function( el ) {
-
-			var input;
-
-			// Select is set to empty string on purpose
-			// This is to test IE's treatment of not explicitly
-			// setting a boolean content attribute,
-			// since its presence should be enough
-			// https://bugs.jquery.com/ticket/12359
-			docElem.appendChild( el ).innerHTML = "<a id='" + expando + "'></a>" +
-				"<select id='" + expando + "-\r\\' msallowcapture=''>" +
-				"<option selected=''></option></select>";
-
-			// Support: IE8, Opera 11-12.16
-			// Nothing should be selected when empty strings follow ^= or $= or *=
-			// The test attribute must be unknown in Opera but "safe" for WinRT
-			// https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section
-			if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) {
-				rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" );
-			}
-
-			// Support: IE8
-			// Boolean attributes and "value" are not treated correctly
-			if ( !el.querySelectorAll( "[selected]" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" );
-			}
-
-			// Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+
-			if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) {
-				rbuggyQSA.push( "~=" );
-			}
-
-			// Support: IE 11+, Edge 15 - 18+
-			// IE 11/Edge don't find elements on a `[name='']` query in some cases.
-			// Adding a temporary attribute to the document before the selection works
-			// around the issue.
-			// Interestingly, IE 10 & older don't seem to have the issue.
-			input = document.createElement( "input" );
-			input.setAttribute( "name", "" );
-			el.appendChild( input );
-			if ( !el.querySelectorAll( "[name='']" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" +
-					whitespace + "*(?:''|\"\")" );
-			}
-
-			// Webkit/Opera - :checked should return selected option elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			// IE8 throws error here and will not see later tests
-			if ( !el.querySelectorAll( ":checked" ).length ) {
-				rbuggyQSA.push( ":checked" );
-			}
-
-			// Support: Safari 8+, iOS 8+
-			// https://bugs.webkit.org/show_bug.cgi?id=136851
-			// In-page `selector#id sibling-combinator selector` fails
-			if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) {
-				rbuggyQSA.push( ".#.+[+~]" );
-			}
-
-			// Support: Firefox <=3.6 - 5 only
-			// Old Firefox doesn't throw on a badly-escaped identifier.
-			el.querySelectorAll( "\\\f" );
-			rbuggyQSA.push( "[\\r\\n\\f]" );
-		} );
-
-		assert( function( el ) {
-			el.innerHTML = "<a href='' disabled='disabled'></a>" +
-				"<select disabled='disabled'><option/></select>";
-
-			// Support: Windows 8 Native Apps
-			// The type and name attributes are restricted during .innerHTML assignment
-			var input = document.createElement( "input" );
-			input.setAttribute( "type", "hidden" );
-			el.appendChild( input ).setAttribute( "name", "D" );
-
-			// Support: IE8
-			// Enforce case-sensitivity of name attribute
-			if ( el.querySelectorAll( "[name=d]" ).length ) {
-				rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" );
-			}
-
-			// FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled)
-			// IE8 throws error here and will not see later tests
-			if ( el.querySelectorAll( ":enabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: IE9-11+
-			// IE's :disabled selector does not pick up the children of disabled fieldsets
-			docElem.appendChild( el ).disabled = true;
-			if ( el.querySelectorAll( ":disabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: Opera 10 - 11 only
-			// Opera 10-11 does not throw on post-comma invalid pseudos
-			el.querySelectorAll( "*,:x" );
-			rbuggyQSA.push( ",.*:" );
-		} );
-	}
-
-	if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches ||
-		docElem.webkitMatchesSelector ||
-		docElem.mozMatchesSelector ||
-		docElem.oMatchesSelector ||
-		docElem.msMatchesSelector ) ) ) ) {
-
-		assert( function( el ) {
-
-			// Check to see if it's possible to do matchesSelector
-			// on a disconnected node (IE 9)
-			support.disconnectedMatch = matches.call( el, "*" );
-
-			// This should fail with an exception
-			// Gecko does not error, returns false instead
-			matches.call( el, "[s!='']:x" );
-			rbuggyMatches.push( "!=", pseudos );
-		} );
-	}
-
-	rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) );
-	rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) );
-
-	/* Contains
-	---------------------------------------------------------------------- */
-	hasCompare = rnative.test( docElem.compareDocumentPosition );
-
-	// Element contains another
-	// Purposefully self-exclusive
-	// As in, an element does not contain itself
-	contains = hasCompare || rnative.test( docElem.contains ) ?
-		function( a, b ) {
-			var adown = a.nodeType === 9 ? a.documentElement : a,
-				bup = b && b.parentNode;
-			return a === bup || !!( bup && bup.nodeType === 1 && (
-				adown.contains ?
-					adown.contains( bup ) :
-					a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16
-			) );
-		} :
-		function( a, b ) {
-			if ( b ) {
-				while ( ( b = b.parentNode ) ) {
-					if ( b === a ) {
-						return true;
-					}
-				}
-			}
-			return false;
-		};
-
-	/* Sorting
-	---------------------------------------------------------------------- */
-
-	// Document order sorting
-	sortOrder = hasCompare ?
-	function( a, b ) {
-
-		// Flag for duplicate removal
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		// Sort on method existence if only one input has compareDocumentPosition
-		var compare = !a.compareDocumentPosition - !b.compareDocumentPosition;
-		if ( compare ) {
-			return compare;
-		}
-
-		// Calculate position if both inputs belong to the same document
-		// Support: IE 11+, Edge 17 - 18+
-		// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-		// two documents; shallow comparisons work.
-		// eslint-disable-next-line eqeqeq
-		compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ?
-			a.compareDocumentPosition( b ) :
-
-			// Otherwise we know they are disconnected
-			1;
-
-		// Disconnected nodes
-		if ( compare & 1 ||
-			( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) {
-
-			// Choose the first element that is related to our preferred document
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( a == document || a.ownerDocument == preferredDoc &&
-				contains( preferredDoc, a ) ) {
-				return -1;
-			}
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( b == document || b.ownerDocument == preferredDoc &&
-				contains( preferredDoc, b ) ) {
-				return 1;
-			}
-
-			// Maintain original order
-			return sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-		}
-
-		return compare & 4 ? -1 : 1;
-	} :
-	function( a, b ) {
-
-		// Exit early if the nodes are identical
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		var cur,
-			i = 0,
-			aup = a.parentNode,
-			bup = b.parentNode,
-			ap = [ a ],
-			bp = [ b ];
-
-		// Parentless nodes are either documents or disconnected
-		if ( !aup || !bup ) {
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			return a == document ? -1 :
-				b == document ? 1 :
-				/* eslint-enable eqeqeq */
-				aup ? -1 :
-				bup ? 1 :
-				sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-
-		// If the nodes are siblings, we can do a quick check
-		} else if ( aup === bup ) {
-			return siblingCheck( a, b );
-		}
-
-		// Otherwise we need full lists of their ancestors for comparison
-		cur = a;
-		while ( ( cur = cur.parentNode ) ) {
-			ap.unshift( cur );
-		}
-		cur = b;
-		while ( ( cur = cur.parentNode ) ) {
-			bp.unshift( cur );
-		}
-
-		// Walk down the tree looking for a discrepancy
-		while ( ap[ i ] === bp[ i ] ) {
-			i++;
-		}
-
-		return i ?
-
-			// Do a sibling check if the nodes have a common ancestor
-			siblingCheck( ap[ i ], bp[ i ] ) :
-
-			// Otherwise nodes in our document sort first
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			ap[ i ] == preferredDoc ? -1 :
-			bp[ i ] == preferredDoc ? 1 :
-			/* eslint-enable eqeqeq */
-			0;
-	};
-
-	return document;
-};
-
-Sizzle.matches = function( expr, elements ) {
-	return Sizzle( expr, null, null, elements );
-};
-
-Sizzle.matchesSelector = function( elem, expr ) {
-	setDocument( elem );
-
-	if ( support.matchesSelector && documentIsHTML &&
-		!nonnativeSelectorCache[ expr + " " ] &&
-		( !rbuggyMatches || !rbuggyMatches.test( expr ) ) &&
-		( !rbuggyQSA     || !rbuggyQSA.test( expr ) ) ) {
-
-		try {
-			var ret = matches.call( elem, expr );
-
-			// IE 9's matchesSelector returns false on disconnected nodes
-			if ( ret || support.disconnectedMatch ||
-
-				// As well, disconnected nodes are said to be in a document
-				// fragment in IE 9
-				elem.document && elem.document.nodeType !== 11 ) {
-				return ret;
-			}
-		} catch ( e ) {
-			nonnativeSelectorCache( expr, true );
-		}
-	}
-
-	return Sizzle( expr, document, null, [ elem ] ).length > 0;
-};
-
-Sizzle.contains = function( context, elem ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( context.ownerDocument || context ) != document ) {
-		setDocument( context );
-	}
-	return contains( context, elem );
-};
-
-Sizzle.attr = function( elem, name ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( elem.ownerDocument || elem ) != document ) {
-		setDocument( elem );
-	}
-
-	var fn = Expr.attrHandle[ name.toLowerCase() ],
-
-		// Don't get fooled by Object.prototype properties (jQuery #13807)
-		val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ?
-			fn( elem, name, !documentIsHTML ) :
-			undefined;
-
-	return val !== undefined ?
-		val :
-		support.attributes || !documentIsHTML ?
-			elem.getAttribute( name ) :
-			( val = elem.getAttributeNode( name ) ) && val.specified ?
-				val.value :
-				null;
-};
-
-Sizzle.escape = function( sel ) {
-	return ( sel + "" ).replace( rcssescape, fcssescape );
-};
-
-Sizzle.error = function( msg ) {
-	throw new Error( "Syntax error, unrecognized expression: " + msg );
-};
-
-/**
- * Document sorting and removing duplicates
- * @param {ArrayLike} results
- */
-Sizzle.uniqueSort = function( results ) {
-	var elem,
-		duplicates = [],
-		j = 0,
-		i = 0;
-
-	// Unless we *know* we can detect duplicates, assume their presence
-	hasDuplicate = !support.detectDuplicates;
-	sortInput = !support.sortStable && results.slice( 0 );
-	results.sort( sortOrder );
-
-	if ( hasDuplicate ) {
-		while ( ( elem = results[ i++ ] ) ) {
-			if ( elem === results[ i ] ) {
-				j = duplicates.push( i );
-			}
-		}
-		while ( j-- ) {
-			results.splice( duplicates[ j ], 1 );
-		}
-	}
-
-	// Clear input after sorting to release objects
-	// See https://github.com/jquery/sizzle/pull/225
-	sortInput = null;
-
-	return results;
-};
-
-/**
- * Utility function for retrieving the text value of an array of DOM nodes
- * @param {Array|Element} elem
- */
-getText = Sizzle.getText = function( elem ) {
-	var node,
-		ret = "",
-		i = 0,
-		nodeType = elem.nodeType;
-
-	if ( !nodeType ) {
-
-		// If no nodeType, this is expected to be an array
-		while ( ( node = elem[ i++ ] ) ) {
-
-			// Do not traverse comment nodes
-			ret += getText( node );
-		}
-	} else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) {
-
-		// Use textContent for elements
-		// innerText usage removed for consistency of new lines (jQuery #11153)
-		if ( typeof elem.textContent === "string" ) {
-			return elem.textContent;
-		} else {
-
-			// Traverse its children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				ret += getText( elem );
-			}
-		}
-	} else if ( nodeType === 3 || nodeType === 4 ) {
-		return elem.nodeValue;
-	}
-
-	// Do not include comment or processing instruction nodes
-
-	return ret;
-};
-
-Expr = Sizzle.selectors = {
-
-	// Can be adjusted by the user
-	cacheLength: 50,
-
-	createPseudo: markFunction,
-
-	match: matchExpr,
-
-	attrHandle: {},
-
-	find: {},
-
-	relative: {
-		">": { dir: "parentNode", first: true },
-		" ": { dir: "parentNode" },
-		"+": { dir: "previousSibling", first: true },
-		"~": { dir: "previousSibling" }
-	},
-
-	preFilter: {
-		"ATTR": function( match ) {
-			match[ 1 ] = match[ 1 ].replace( runescape, funescape );
-
-			// Move the given value to match[3] whether quoted or unquoted
-			match[ 3 ] = ( match[ 3 ] || match[ 4 ] ||
-				match[ 5 ] || "" ).replace( runescape, funescape );
-
-			if ( match[ 2 ] === "~=" ) {
-				match[ 3 ] = " " + match[ 3 ] + " ";
-			}
-
-			return match.slice( 0, 4 );
-		},
-
-		"CHILD": function( match ) {
-
-			/* matches from matchExpr["CHILD"]
-				1 type (only|nth|...)
-				2 what (child|of-type)
-				3 argument (even|odd|\d*|\d*n([+-]\d+)?|...)
-				4 xn-component of xn+y argument ([+-]?\d*n|)
-				5 sign of xn-component
-				6 x of xn-component
-				7 sign of y-component
-				8 y of y-component
-			*/
-			match[ 1 ] = match[ 1 ].toLowerCase();
-
-			if ( match[ 1 ].slice( 0, 3 ) === "nth" ) {
-
-				// nth-* requires argument
-				if ( !match[ 3 ] ) {
-					Sizzle.error( match[ 0 ] );
-				}
-
-				// numeric x and y parameters for Expr.filter.CHILD
-				// remember that false/true cast respectively to 0/1
-				match[ 4 ] = +( match[ 4 ] ?
-					match[ 5 ] + ( match[ 6 ] || 1 ) :
-					2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) );
-				match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" );
-
-				// other types prohibit arguments
-			} else if ( match[ 3 ] ) {
-				Sizzle.error( match[ 0 ] );
-			}
-
-			return match;
-		},
-
-		"PSEUDO": function( match ) {
-			var excess,
-				unquoted = !match[ 6 ] && match[ 2 ];
-
-			if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) {
-				return null;
-			}
-
-			// Accept quoted arguments as-is
-			if ( match[ 3 ] ) {
-				match[ 2 ] = match[ 4 ] || match[ 5 ] || "";
-
-			// Strip excess characters from unquoted arguments
-			} else if ( unquoted && rpseudo.test( unquoted ) &&
-
-				// Get excess from tokenize (recursively)
-				( excess = tokenize( unquoted, true ) ) &&
-
-				// advance to the next closing parenthesis
-				( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) {
-
-				// excess is a negative index
-				match[ 0 ] = match[ 0 ].slice( 0, excess );
-				match[ 2 ] = unquoted.slice( 0, excess );
-			}
-
-			// Return only captures needed by the pseudo filter method (type and argument)
-			return match.slice( 0, 3 );
-		}
-	},
-
-	filter: {
-
-		"TAG": function( nodeNameSelector ) {
-			var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase();
-			return nodeNameSelector === "*" ?
-				function() {
-					return true;
-				} :
-				function( elem ) {
-					return elem.nodeName && elem.nodeName.toLowerCase() === nodeName;
-				};
-		},
-
-		"CLASS": function( className ) {
-			var pattern = classCache[ className + " " ];
-
-			return pattern ||
-				( pattern = new RegExp( "(^|" + whitespace +
-					")" + className + "(" + whitespace + "|$)" ) ) && classCache(
-						className, function( elem ) {
-							return pattern.test(
-								typeof elem.className === "string" && elem.className ||
-								typeof elem.getAttribute !== "undefined" &&
-									elem.getAttribute( "class" ) ||
-								""
-							);
-				} );
-		},
-
-		"ATTR": function( name, operator, check ) {
-			return function( elem ) {
-				var result = Sizzle.attr( elem, name );
-
-				if ( result == null ) {
-					return operator === "!=";
-				}
-				if ( !operator ) {
-					return true;
-				}
-
-				result += "";
-
-				/* eslint-disable max-len */
-
-				return operator === "=" ? result === check :
-					operator === "!=" ? result !== check :
-					operator === "^=" ? check && result.indexOf( check ) === 0 :
-					operator === "*=" ? check && result.indexOf( check ) > -1 :
-					operator === "$=" ? check && result.slice( -check.length ) === check :
-					operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 :
-					operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" :
-					false;
-				/* eslint-enable max-len */
-
-			};
-		},
-
-		"CHILD": function( type, what, _argument, first, last ) {
-			var simple = type.slice( 0, 3 ) !== "nth",
-				forward = type.slice( -4 ) !== "last",
-				ofType = what === "of-type";
-
-			return first === 1 && last === 0 ?
-
-				// Shortcut for :nth-*(n)
-				function( elem ) {
-					return !!elem.parentNode;
-				} :
-
-				function( elem, _context, xml ) {
-					var cache, uniqueCache, outerCache, node, nodeIndex, start,
-						dir = simple !== forward ? "nextSibling" : "previousSibling",
-						parent = elem.parentNode,
-						name = ofType && elem.nodeName.toLowerCase(),
-						useCache = !xml && !ofType,
-						diff = false;
-
-					if ( parent ) {
-
-						// :(first|last|only)-(child|of-type)
-						if ( simple ) {
-							while ( dir ) {
-								node = elem;
-								while ( ( node = node[ dir ] ) ) {
-									if ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) {
-
-										return false;
-									}
-								}
-
-								// Reverse direction for :only-* (if we haven't yet done so)
-								start = dir = type === "only" && !start && "nextSibling";
-							}
-							return true;
-						}
-
-						start = [ forward ? parent.firstChild : parent.lastChild ];
-
-						// non-xml :nth-child(...) stores cache data on `parent`
-						if ( forward && useCache ) {
-
-							// Seek `elem` from a previously-cached index
-
-							// ...in a gzip-friendly way
-							node = parent;
-							outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-							// Support: IE <9 only
-							// Defend against cloned attroperties (jQuery gh-1709)
-							uniqueCache = outerCache[ node.uniqueID ] ||
-								( outerCache[ node.uniqueID ] = {} );
-
-							cache = uniqueCache[ type ] || [];
-							nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-							diff = nodeIndex && cache[ 2 ];
-							node = nodeIndex && parent.childNodes[ nodeIndex ];
-
-							while ( ( node = ++nodeIndex && node && node[ dir ] ||
-
-								// Fallback to seeking `elem` from the start
-								( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-								// When found, cache indexes on `parent` and break
-								if ( node.nodeType === 1 && ++diff && node === elem ) {
-									uniqueCache[ type ] = [ dirruns, nodeIndex, diff ];
-									break;
-								}
-							}
-
-						} else {
-
-							// Use previously-cached element index if available
-							if ( useCache ) {
-
-								// ...in a gzip-friendly way
-								node = elem;
-								outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-								// Support: IE <9 only
-								// Defend against cloned attroperties (jQuery gh-1709)
-								uniqueCache = outerCache[ node.uniqueID ] ||
-									( outerCache[ node.uniqueID ] = {} );
-
-								cache = uniqueCache[ type ] || [];
-								nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-								diff = nodeIndex;
-							}
-
-							// xml :nth-child(...)
-							// or :nth-last-child(...) or :nth(-last)?-of-type(...)
-							if ( diff === false ) {
-
-								// Use the same loop as above to seek `elem` from the start
-								while ( ( node = ++nodeIndex && node && node[ dir ] ||
-									( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-									if ( ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) &&
-										++diff ) {
-
-										// Cache the index of each encountered element
-										if ( useCache ) {
-											outerCache = node[ expando ] ||
-												( node[ expando ] = {} );
-
-											// Support: IE <9 only
-											// Defend against cloned attroperties (jQuery gh-1709)
-											uniqueCache = outerCache[ node.uniqueID ] ||
-												( outerCache[ node.uniqueID ] = {} );
-
-											uniqueCache[ type ] = [ dirruns, diff ];
-										}
-
-										if ( node === elem ) {
-											break;
-										}
-									}
-								}
-							}
-						}
-
-						// Incorporate the offset, then check against cycle size
-						diff -= last;
-						return diff === first || ( diff % first === 0 && diff / first >= 0 );
-					}
-				};
-		},
-
-		"PSEUDO": function( pseudo, argument ) {
-
-			// pseudo-class names are case-insensitive
-			// http://www.w3.org/TR/selectors/#pseudo-classes
-			// Prioritize by case sensitivity in case custom pseudos are added with uppercase letters
-			// Remember that setFilters inherits from pseudos
-			var args,
-				fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] ||
-					Sizzle.error( "unsupported pseudo: " + pseudo );
-
-			// The user may use createPseudo to indicate that
-			// arguments are needed to create the filter function
-			// just as Sizzle does
-			if ( fn[ expando ] ) {
-				return fn( argument );
-			}
-
-			// But maintain support for old signatures
-			if ( fn.length > 1 ) {
-				args = [ pseudo, pseudo, "", argument ];
-				return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ?
-					markFunction( function( seed, matches ) {
-						var idx,
-							matched = fn( seed, argument ),
-							i = matched.length;
-						while ( i-- ) {
-							idx = indexOf( seed, matched[ i ] );
-							seed[ idx ] = !( matches[ idx ] = matched[ i ] );
-						}
-					} ) :
-					function( elem ) {
-						return fn( elem, 0, args );
-					};
-			}
-
-			return fn;
-		}
-	},
-
-	pseudos: {
-
-		// Potentially complex pseudos
-		"not": markFunction( function( selector ) {
-
-			// Trim the selector passed to compile
-			// to avoid treating leading and trailing
-			// spaces as combinators
-			var input = [],
-				results = [],
-				matcher = compile( selector.replace( rtrim, "$1" ) );
-
-			return matcher[ expando ] ?
-				markFunction( function( seed, matches, _context, xml ) {
-					var elem,
-						unmatched = matcher( seed, null, xml, [] ),
-						i = seed.length;
-
-					// Match elements unmatched by `matcher`
-					while ( i-- ) {
-						if ( ( elem = unmatched[ i ] ) ) {
-							seed[ i ] = !( matches[ i ] = elem );
-						}
-					}
-				} ) :
-				function( elem, _context, xml ) {
-					input[ 0 ] = elem;
-					matcher( input, null, xml, results );
-
-					// Don't keep the element (issue #299)
-					input[ 0 ] = null;
-					return !results.pop();
-				};
-		} ),
-
-		"has": markFunction( function( selector ) {
-			return function( elem ) {
-				return Sizzle( selector, elem ).length > 0;
-			};
-		} ),
-
-		"contains": markFunction( function( text ) {
-			text = text.replace( runescape, funescape );
-			return function( elem ) {
-				return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1;
-			};
-		} ),
-
-		// "Whether an element is represented by a :lang() selector
-		// is based solely on the element's language value
-		// being equal to the identifier C,
-		// or beginning with the identifier C immediately followed by "-".
-		// The matching of C against the element's language value is performed case-insensitively.
-		// The identifier C does not have to be a valid language name."
-		// http://www.w3.org/TR/selectors/#lang-pseudo
-		"lang": markFunction( function( lang ) {
-
-			// lang value must be a valid identifier
-			if ( !ridentifier.test( lang || "" ) ) {
-				Sizzle.error( "unsupported lang: " + lang );
-			}
-			lang = lang.replace( runescape, funescape ).toLowerCase();
-			return function( elem ) {
-				var elemLang;
-				do {
-					if ( ( elemLang = documentIsHTML ?
-						elem.lang :
-						elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) {
-
-						elemLang = elemLang.toLowerCase();
-						return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0;
-					}
-				} while ( ( elem = elem.parentNode ) && elem.nodeType === 1 );
-				return false;
-			};
-		} ),
-
-		// Miscellaneous
-		"target": function( elem ) {
-			var hash = window.location && window.location.hash;
-			return hash && hash.slice( 1 ) === elem.id;
-		},
-
-		"root": function( elem ) {
-			return elem === docElem;
-		},
-
-		"focus": function( elem ) {
-			return elem === document.activeElement &&
-				( !document.hasFocus || document.hasFocus() ) &&
-				!!( elem.type || elem.href || ~elem.tabIndex );
-		},
-
-		// Boolean properties
-		"enabled": createDisabledPseudo( false ),
-		"disabled": createDisabledPseudo( true ),
-
-		"checked": function( elem ) {
-
-			// In CSS3, :checked should return both checked and selected elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			var nodeName = elem.nodeName.toLowerCase();
-			return ( nodeName === "input" && !!elem.checked ) ||
-				( nodeName === "option" && !!elem.selected );
-		},
-
-		"selected": function( elem ) {
-
-			// Accessing this property makes selected-by-default
-			// options in Safari work properly
-			if ( elem.parentNode ) {
-				// eslint-disable-next-line no-unused-expressions
-				elem.parentNode.selectedIndex;
-			}
-
-			return elem.selected === true;
-		},
-
-		// Contents
-		"empty": function( elem ) {
-
-			// http://www.w3.org/TR/selectors/#empty-pseudo
-			// :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5),
-			//   but not by others (comment: 8; processing instruction: 7; etc.)
-			// nodeType < 6 works because attributes (2) do not appear as children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				if ( elem.nodeType < 6 ) {
-					return false;
-				}
-			}
-			return true;
-		},
-
-		"parent": function( elem ) {
-			return !Expr.pseudos[ "empty" ]( elem );
-		},
-
-		// Element/input types
-		"header": function( elem ) {
-			return rheader.test( elem.nodeName );
-		},
-
-		"input": function( elem ) {
-			return rinputs.test( elem.nodeName );
-		},
-
-		"button": function( elem ) {
-			var name = elem.nodeName.toLowerCase();
-			return name === "input" && elem.type === "button" || name === "button";
-		},
-
-		"text": function( elem ) {
-			var attr;
-			return elem.nodeName.toLowerCase() === "input" &&
-				elem.type === "text" &&
-
-				// Support: IE<8
-				// New HTML5 attribute values (e.g., "search") appear with elem.type === "text"
-				( ( attr = elem.getAttribute( "type" ) ) == null ||
-					attr.toLowerCase() === "text" );
-		},
-
-		// Position-in-collection
-		"first": createPositionalPseudo( function() {
-			return [ 0 ];
-		} ),
-
-		"last": createPositionalPseudo( function( _matchIndexes, length ) {
-			return [ length - 1 ];
-		} ),
-
-		"eq": createPositionalPseudo( function( _matchIndexes, length, argument ) {
-			return [ argument < 0 ? argument + length : argument ];
-		} ),
-
-		"even": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 0;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"odd": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 1;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"lt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ?
-				argument + length :
-				argument > length ?
-					length :
-					argument;
-			for ( ; --i >= 0; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"gt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ? argument + length : argument;
-			for ( ; ++i < length; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} )
-	}
-};
-
-Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ];
-
-// Add button/input type pseudos
-for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) {
-	Expr.pseudos[ i ] = createInputPseudo( i );
-}
-for ( i in { submit: true, reset: true } ) {
-	Expr.pseudos[ i ] = createButtonPseudo( i );
-}
-
-// Easy API for creating new setFilters
-function setFilters() {}
-setFilters.prototype = Expr.filters = Expr.pseudos;
-Expr.setFilters = new setFilters();
-
-tokenize = Sizzle.tokenize = function( selector, parseOnly ) {
-	var matched, match, tokens, type,
-		soFar, groups, preFilters,
-		cached = tokenCache[ selector + " " ];
-
-	if ( cached ) {
-		return parseOnly ? 0 : cached.slice( 0 );
-	}
-
-	soFar = selector;
-	groups = [];
-	preFilters = Expr.preFilter;
-
-	while ( soFar ) {
-
-		// Comma and first run
-		if ( !matched || ( match = rcomma.exec( soFar ) ) ) {
-			if ( match ) {
-
-				// Don't consume trailing commas as valid
-				soFar = soFar.slice( match[ 0 ].length ) || soFar;
-			}
-			groups.push( ( tokens = [] ) );
-		}
-
-		matched = false;
-
-		// Combinators
-		if ( ( match = rcombinators.exec( soFar ) ) ) {
-			matched = match.shift();
-			tokens.push( {
-				value: matched,
-
-				// Cast descendant combinators to space
-				type: match[ 0 ].replace( rtrim, " " )
-			} );
-			soFar = soFar.slice( matched.length );
-		}
-
-		// Filters
-		for ( type in Expr.filter ) {
-			if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] ||
-				( match = preFilters[ type ]( match ) ) ) ) {
-				matched = match.shift();
-				tokens.push( {
-					value: matched,
-					type: type,
-					matches: match
-				} );
-				soFar = soFar.slice( matched.length );
-			}
-		}
-
-		if ( !matched ) {
-			break;
-		}
-	}
-
-	// Return the length of the invalid excess
-	// if we're just parsing
-	// Otherwise, throw an error or return tokens
-	return parseOnly ?
-		soFar.length :
-		soFar ?
-			Sizzle.error( selector ) :
-
-			// Cache the tokens
-			tokenCache( selector, groups ).slice( 0 );
-};
-
-function toSelector( tokens ) {
-	var i = 0,
-		len = tokens.length,
-		selector = "";
-	for ( ; i < len; i++ ) {
-		selector += tokens[ i ].value;
-	}
-	return selector;
-}
-
-function addCombinator( matcher, combinator, base ) {
-	var dir = combinator.dir,
-		skip = combinator.next,
-		key = skip || dir,
-		checkNonElements = base && key === "parentNode",
-		doneName = done++;
-
-	return combinator.first ?
-
-		// Check against closest ancestor/preceding element
-		function( elem, context, xml ) {
-			while ( ( elem = elem[ dir ] ) ) {
-				if ( elem.nodeType === 1 || checkNonElements ) {
-					return matcher( elem, context, xml );
-				}
-			}
-			return false;
-		} :
-
-		// Check against all ancestor/preceding elements
-		function( elem, context, xml ) {
-			var oldCache, uniqueCache, outerCache,
-				newCache = [ dirruns, doneName ];
-
-			// We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching
-			if ( xml ) {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						if ( matcher( elem, context, xml ) ) {
-							return true;
-						}
-					}
-				}
-			} else {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						outerCache = elem[ expando ] || ( elem[ expando ] = {} );
-
-						// Support: IE <9 only
-						// Defend against cloned attroperties (jQuery gh-1709)
-						uniqueCache = outerCache[ elem.uniqueID ] ||
-							( outerCache[ elem.uniqueID ] = {} );
-
-						if ( skip && skip === elem.nodeName.toLowerCase() ) {
-							elem = elem[ dir ] || elem;
-						} else if ( ( oldCache = uniqueCache[ key ] ) &&
-							oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) {
-
-							// Assign to newCache so results back-propagate to previous elements
-							return ( newCache[ 2 ] = oldCache[ 2 ] );
-						} else {
-
-							// Reuse newcache so results back-propagate to previous elements
-							uniqueCache[ key ] = newCache;
-
-							// A match means we're done; a fail means we have to keep checking
-							if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) {
-								return true;
-							}
-						}
-					}
-				}
-			}
-			return false;
-		};
-}
-
-function elementMatcher( matchers ) {
-	return matchers.length > 1 ?
-		function( elem, context, xml ) {
-			var i = matchers.length;
-			while ( i-- ) {
-				if ( !matchers[ i ]( elem, context, xml ) ) {
-					return false;
-				}
-			}
-			return true;
-		} :
-		matchers[ 0 ];
-}
-
-function multipleContexts( selector, contexts, results ) {
-	var i = 0,
-		len = contexts.length;
-	for ( ; i < len; i++ ) {
-		Sizzle( selector, contexts[ i ], results );
-	}
-	return results;
-}
-
-function condense( unmatched, map, filter, context, xml ) {
-	var elem,
-		newUnmatched = [],
-		i = 0,
-		len = unmatched.length,
-		mapped = map != null;
-
-	for ( ; i < len; i++ ) {
-		if ( ( elem = unmatched[ i ] ) ) {
-			if ( !filter || filter( elem, context, xml ) ) {
-				newUnmatched.push( elem );
-				if ( mapped ) {
-					map.push( i );
-				}
-			}
-		}
-	}
-
-	return newUnmatched;
-}
-
-function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) {
-	if ( postFilter && !postFilter[ expando ] ) {
-		postFilter = setMatcher( postFilter );
-	}
-	if ( postFinder && !postFinder[ expando ] ) {
-		postFinder = setMatcher( postFinder, postSelector );
-	}
-	return markFunction( function( seed, results, context, xml ) {
-		var temp, i, elem,
-			preMap = [],
-			postMap = [],
-			preexisting = results.length,
-
-			// Get initial elements from seed or context
-			elems = seed || multipleContexts(
-				selector || "*",
-				context.nodeType ? [ context ] : context,
-				[]
-			),
-
-			// Prefilter to get matcher input, preserving a map for seed-results synchronization
-			matcherIn = preFilter && ( seed || !selector ) ?
-				condense( elems, preMap, preFilter, context, xml ) :
-				elems,
-
-			matcherOut = matcher ?
-
-				// If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results,
-				postFinder || ( seed ? preFilter : preexisting || postFilter ) ?
-
-					// ...intermediate processing is necessary
-					[] :
-
-					// ...otherwise use results directly
-					results :
-				matcherIn;
-
-		// Find primary matches
-		if ( matcher ) {
-			matcher( matcherIn, matcherOut, context, xml );
-		}
-
-		// Apply postFilter
-		if ( postFilter ) {
-			temp = condense( matcherOut, postMap );
-			postFilter( temp, [], context, xml );
-
-			// Un-match failing elements by moving them back to matcherIn
-			i = temp.length;
-			while ( i-- ) {
-				if ( ( elem = temp[ i ] ) ) {
-					matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem );
-				}
-			}
-		}
-
-		if ( seed ) {
-			if ( postFinder || preFilter ) {
-				if ( postFinder ) {
-
-					// Get the final matcherOut by condensing this intermediate into postFinder contexts
-					temp = [];
-					i = matcherOut.length;
-					while ( i-- ) {
-						if ( ( elem = matcherOut[ i ] ) ) {
-
-							// Restore matcherIn since elem is not yet a final match
-							temp.push( ( matcherIn[ i ] = elem ) );
-						}
-					}
-					postFinder( null, ( matcherOut = [] ), temp, xml );
-				}
-
-				// Move matched elements from seed to results to keep them synchronized
-				i = matcherOut.length;
-				while ( i-- ) {
-					if ( ( elem = matcherOut[ i ] ) &&
-						( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) {
-
-						seed[ temp ] = !( results[ temp ] = elem );
-					}
-				}
-			}
-
-		// Add elements to results, through postFinder if defined
-		} else {
-			matcherOut = condense(
-				matcherOut === results ?
-					matcherOut.splice( preexisting, matcherOut.length ) :
-					matcherOut
-			);
-			if ( postFinder ) {
-				postFinder( null, results, matcherOut, xml );
-			} else {
-				push.apply( results, matcherOut );
-			}
-		}
-	} );
-}
-
-function matcherFromTokens( tokens ) {
-	var checkContext, matcher, j,
-		len = tokens.length,
-		leadingRelative = Expr.relative[ tokens[ 0 ].type ],
-		implicitRelative = leadingRelative || Expr.relative[ " " ],
-		i = leadingRelative ? 1 : 0,
-
-		// The foundational matcher ensures that elements are reachable from top-level context(s)
-		matchContext = addCombinator( function( elem ) {
-			return elem === checkContext;
-		}, implicitRelative, true ),
-		matchAnyContext = addCombinator( function( elem ) {
-			return indexOf( checkContext, elem ) > -1;
-		}, implicitRelative, true ),
-		matchers = [ function( elem, context, xml ) {
-			var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || (
-				( checkContext = context ).nodeType ?
-					matchContext( elem, context, xml ) :
-					matchAnyContext( elem, context, xml ) );
-
-			// Avoid hanging onto element (issue #299)
-			checkContext = null;
-			return ret;
-		} ];
-
-	for ( ; i < len; i++ ) {
-		if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) {
-			matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ];
-		} else {
-			matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches );
-
-			// Return special upon seeing a positional matcher
-			if ( matcher[ expando ] ) {
-
-				// Find the next relative operator (if any) for proper handling
-				j = ++i;
-				for ( ; j < len; j++ ) {
-					if ( Expr.relative[ tokens[ j ].type ] ) {
-						break;
-					}
-				}
-				return setMatcher(
-					i > 1 && elementMatcher( matchers ),
-					i > 1 && toSelector(
-
-					// If the preceding token was a descendant combinator, insert an implicit any-element `*`
-					tokens
-						.slice( 0, i - 1 )
-						.concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } )
-					).replace( rtrim, "$1" ),
-					matcher,
-					i < j && matcherFromTokens( tokens.slice( i, j ) ),
-					j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ),
-					j < len && toSelector( tokens )
-				);
-			}
-			matchers.push( matcher );
-		}
-	}
-
-	return elementMatcher( matchers );
-}
-
-function matcherFromGroupMatchers( elementMatchers, setMatchers ) {
-	var bySet = setMatchers.length > 0,
-		byElement = elementMatchers.length > 0,
-		superMatcher = function( seed, context, xml, results, outermost ) {
-			var elem, j, matcher,
-				matchedCount = 0,
-				i = "0",
-				unmatched = seed && [],
-				setMatched = [],
-				contextBackup = outermostContext,
-
-				// We must always have either seed elements or outermost context
-				elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ),
-
-				// Use integer dirruns iff this is the outermost matcher
-				dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ),
-				len = elems.length;
-
-			if ( outermost ) {
-
-				// Support: IE 11+, Edge 17 - 18+
-				// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-				// two documents; shallow comparisons work.
-				// eslint-disable-next-line eqeqeq
-				outermostContext = context == document || context || outermost;
-			}
-
-			// Add elements passing elementMatchers directly to results
-			// Support: IE<9, Safari
-			// Tolerate NodeList properties (IE: "length"; Safari: <number>) matching elements by id
-			for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) {
-				if ( byElement && elem ) {
-					j = 0;
-
-					// Support: IE 11+, Edge 17 - 18+
-					// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-					// two documents; shallow comparisons work.
-					// eslint-disable-next-line eqeqeq
-					if ( !context && elem.ownerDocument != document ) {
-						setDocument( elem );
-						xml = !documentIsHTML;
-					}
-					while ( ( matcher = elementMatchers[ j++ ] ) ) {
-						if ( matcher( elem, context || document, xml ) ) {
-							results.push( elem );
-							break;
-						}
-					}
-					if ( outermost ) {
-						dirruns = dirrunsUnique;
-					}
-				}
-
-				// Track unmatched elements for set filters
-				if ( bySet ) {
-
-					// They will have gone through all possible matchers
-					if ( ( elem = !matcher && elem ) ) {
-						matchedCount--;
-					}
-
-					// Lengthen the array for every element, matched or not
-					if ( seed ) {
-						unmatched.push( elem );
-					}
-				}
-			}
-
-			// `i` is now the count of elements visited above, and adding it to `matchedCount`
-			// makes the latter nonnegative.
-			matchedCount += i;
-
-			// Apply set filters to unmatched elements
-			// NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount`
-			// equals `i`), unless we didn't visit _any_ elements in the above loop because we have
-			// no element matchers and no seed.
-			// Incrementing an initially-string "0" `i` allows `i` to remain a string only in that
-			// case, which will result in a "00" `matchedCount` that differs from `i` but is also
-			// numerically zero.
-			if ( bySet && i !== matchedCount ) {
-				j = 0;
-				while ( ( matcher = setMatchers[ j++ ] ) ) {
-					matcher( unmatched, setMatched, context, xml );
-				}
-
-				if ( seed ) {
-
-					// Reintegrate element matches to eliminate the need for sorting
-					if ( matchedCount > 0 ) {
-						while ( i-- ) {
-							if ( !( unmatched[ i ] || setMatched[ i ] ) ) {
-								setMatched[ i ] = pop.call( results );
-							}
-						}
-					}
-
-					// Discard index placeholder values to get only actual matches
-					setMatched = condense( setMatched );
-				}
-
-				// Add matches to results
-				push.apply( results, setMatched );
-
-				// Seedless set matches succeeding multiple successful matchers stipulate sorting
-				if ( outermost && !seed && setMatched.length > 0 &&
-					( matchedCount + setMatchers.length ) > 1 ) {
-
-					Sizzle.uniqueSort( results );
-				}
-			}
-
-			// Override manipulation of globals by nested matchers
-			if ( outermost ) {
-				dirruns = dirrunsUnique;
-				outermostContext = contextBackup;
-			}
-
-			return unmatched;
-		};
-
-	return bySet ?
-		markFunction( superMatcher ) :
-		superMatcher;
-}
-
-compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) {
-	var i,
-		setMatchers = [],
-		elementMatchers = [],
-		cached = compilerCache[ selector + " " ];
-
-	if ( !cached ) {
-
-		// Generate a function of recursive functions that can be used to check each element
-		if ( !match ) {
-			match = tokenize( selector );
-		}
-		i = match.length;
-		while ( i-- ) {
-			cached = matcherFromTokens( match[ i ] );
-			if ( cached[ expando ] ) {
-				setMatchers.push( cached );
-			} else {
-				elementMatchers.push( cached );
-			}
-		}
-
-		// Cache the compiled function
-		cached = compilerCache(
-			selector,
-			matcherFromGroupMatchers( elementMatchers, setMatchers )
-		);
-
-		// Save selector and tokenization
-		cached.selector = selector;
-	}
-	return cached;
-};
-
-/**
- * A low-level selection function that works with Sizzle's compiled
- *  selector functions
- * @param {String|Function} selector A selector or a pre-compiled
- *  selector function built with Sizzle.compile
- * @param {Element} context
- * @param {Array} [results]
- * @param {Array} [seed] A set of elements to match against
- */
-select = Sizzle.select = function( selector, context, results, seed ) {
-	var i, tokens, token, type, find,
-		compiled = typeof selector === "function" && selector,
-		match = !seed && tokenize( ( selector = compiled.selector || selector ) );
-
-	results = results || [];
-
-	// Try to minimize operations if there is only one selector in the list and no seed
-	// (the latter of which guarantees us context)
-	if ( match.length === 1 ) {
-
-		// Reduce context if the leading compound selector is an ID
-		tokens = match[ 0 ] = match[ 0 ].slice( 0 );
-		if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" &&
-			context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) {
-
-			context = ( Expr.find[ "ID" ]( token.matches[ 0 ]
-				.replace( runescape, funescape ), context ) || [] )[ 0 ];
-			if ( !context ) {
-				return results;
-
-			// Precompiled matchers will still verify ancestry, so step up a level
-			} else if ( compiled ) {
-				context = context.parentNode;
-			}
-
-			selector = selector.slice( tokens.shift().value.length );
-		}
-
-		// Fetch a seed set for right-to-left matching
-		i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length;
-		while ( i-- ) {
-			token = tokens[ i ];
-
-			// Abort if we hit a combinator
-			if ( Expr.relative[ ( type = token.type ) ] ) {
-				break;
-			}
-			if ( ( find = Expr.find[ type ] ) ) {
-
-				// Search, expanding context for leading sibling combinators
-				if ( ( seed = find(
-					token.matches[ 0 ].replace( runescape, funescape ),
-					rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) ||
-						context
-				) ) ) {
-
-					// If seed is empty or no tokens remain, we can return early
-					tokens.splice( i, 1 );
-					selector = seed.length && toSelector( tokens );
-					if ( !selector ) {
-						push.apply( results, seed );
-						return results;
-					}
-
-					break;
-				}
-			}
-		}
-	}
-
-	// Compile and execute a filtering function if one is not provided
-	// Provide `match` to avoid retokenization if we modified the selector above
-	( compiled || compile( selector, match ) )(
-		seed,
-		context,
-		!documentIsHTML,
-		results,
-		!context || rsibling.test( selector ) && testContext( context.parentNode ) || context
-	);
-	return results;
-};
-
-// One-time assignments
-
-// Sort stability
-support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando;
-
-// Support: Chrome 14-35+
-// Always assume duplicates if they aren't passed to the comparison function
-support.detectDuplicates = !!hasDuplicate;
-
-// Initialize against the default document
-setDocument();
-
-// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27)
-// Detached nodes confoundingly follow *each other*
-support.sortDetached = assert( function( el ) {
-
-	// Should return 1, but returns 4 (following)
-	return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1;
-} );
-
-// Support: IE<8
-// Prevent attribute/property "interpolation"
-// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx
-if ( !assert( function( el ) {
-	el.innerHTML = "<a href='#'></a>";
-	return el.firstChild.getAttribute( "href" ) === "#";
-} ) ) {
-	addHandle( "type|href|height|width", function( elem, name, isXML ) {
-		if ( !isXML ) {
-			return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 );
-		}
-	} );
-}
-
-// Support: IE<9
-// Use defaultValue in place of getAttribute("value")
-if ( !support.attributes || !assert( function( el ) {
-	el.innerHTML = "<input/>";
-	el.firstChild.setAttribute( "value", "" );
-	return el.firstChild.getAttribute( "value" ) === "";
-} ) ) {
-	addHandle( "value", function( elem, _name, isXML ) {
-		if ( !isXML && elem.nodeName.toLowerCase() === "input" ) {
-			return elem.defaultValue;
-		}
-	} );
-}
-
-// Support: IE<9
-// Use getAttributeNode to fetch booleans when getAttribute lies
-if ( !assert( function( el ) {
-	return el.getAttribute( "disabled" ) == null;
-} ) ) {
-	addHandle( booleans, function( elem, name, isXML ) {
-		var val;
-		if ( !isXML ) {
-			return elem[ name ] === true ? name.toLowerCase() :
-				( val = elem.getAttributeNode( name ) ) && val.specified ?
-					val.value :
-					null;
-		}
-	} );
-}
-
-return Sizzle;
-
-} )( window );
-
-
-
-jQuery.find = Sizzle;
-jQuery.expr = Sizzle.selectors;
-
-// Deprecated
-jQuery.expr[ ":" ] = jQuery.expr.pseudos;
-jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort;
-jQuery.text = Sizzle.getText;
-jQuery.isXMLDoc = Sizzle.isXML;
-jQuery.contains = Sizzle.contains;
-jQuery.escapeSelector = Sizzle.escape;
-
-
-
-
-var dir = function( elem, dir, until ) {
-	var matched = [],
-		truncate = until !== undefined;
-
-	while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) {
-		if ( elem.nodeType === 1 ) {
-			if ( truncate && jQuery( elem ).is( until ) ) {
-				break;
-			}
-			matched.push( elem );
-		}
-	}
-	return matched;
-};
-
-
-var siblings = function( n, elem ) {
-	var matched = [];
-
-	for ( ; n; n = n.nextSibling ) {
-		if ( n.nodeType === 1 && n !== elem ) {
-			matched.push( n );
-		}
-	}
-
-	return matched;
-};
-
-
-var rneedsContext = jQuery.expr.match.needsContext;
-
-
-
-function nodeName( elem, name ) {
-
-	return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase();
-
-}
-var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i );
-
-
-
-// Implement the identical functionality for filter and not
-function winnow( elements, qualifier, not ) {
-	if ( isFunction( qualifier ) ) {
-		return jQuery.grep( elements, function( elem, i ) {
-			return !!qualifier.call( elem, i, elem ) !== not;
-		} );
-	}
-
-	// Single element
-	if ( qualifier.nodeType ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( elem === qualifier ) !== not;
-		} );
-	}
-
-	// Arraylike of elements (jQuery, arguments, Array)
-	if ( typeof qualifier !== "string" ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( indexOf.call( qualifier, elem ) > -1 ) !== not;
-		} );
-	}
-
-	// Filtered directly for both simple and complex selectors
-	return jQuery.filter( qualifier, elements, not );
-}
-
-jQuery.filter = function( expr, elems, not ) {
-	var elem = elems[ 0 ];
-
-	if ( not ) {
-		expr = ":not(" + expr + ")";
-	}
-
-	if ( elems.length === 1 && elem.nodeType === 1 ) {
-		return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : [];
-	}
-
-	return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) {
-		return elem.nodeType === 1;
-	} ) );
-};
-
-jQuery.fn.extend( {
-	find: function( selector ) {
-		var i, ret,
-			len = this.length,
-			self = this;
-
-		if ( typeof selector !== "string" ) {
-			return this.pushStack( jQuery( selector ).filter( function() {
-				for ( i = 0; i < len; i++ ) {
-					if ( jQuery.contains( self[ i ], this ) ) {
-						return true;
-					}
-				}
-			} ) );
-		}
-
-		ret = this.pushStack( [] );
-
-		for ( i = 0; i < len; i++ ) {
-			jQuery.find( selector, self[ i ], ret );
-		}
-
-		return len > 1 ? jQuery.uniqueSort( ret ) : ret;
-	},
-	filter: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], false ) );
-	},
-	not: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], true ) );
-	},
-	is: function( selector ) {
-		return !!winnow(
-			this,
-
-			// If this is a positional/relative selector, check membership in the returned set
-			// so $("p:first").is("p:last") won't return true for a doc with two "p".
-			typeof selector === "string" && rneedsContext.test( selector ) ?
-				jQuery( selector ) :
-				selector || [],
-			false
-		).length;
-	}
-} );
-
-
-// Initialize a jQuery object
-
-
-// A central reference to the root jQuery(document)
-var rootjQuery,
-
-	// A simple way to check for HTML strings
-	// Prioritize #id over <tag> to avoid XSS via location.hash (#9521)
-	// Strict HTML recognition (#11290: must start with <)
-	// Shortcut simple #id case for speed
-	rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/,
-
-	init = jQuery.fn.init = function( selector, context, root ) {
-		var match, elem;
-
-		// HANDLE: $(""), $(null), $(undefined), $(false)
-		if ( !selector ) {
-			return this;
-		}
-
-		// Method init() accepts an alternate rootjQuery
-		// so migrate can support jQuery.sub (gh-2101)
-		root = root || rootjQuery;
-
-		// Handle HTML strings
-		if ( typeof selector === "string" ) {
-			if ( selector[ 0 ] === "<" &&
-				selector[ selector.length - 1 ] === ">" &&
-				selector.length >= 3 ) {
-
-				// Assume that strings that start and end with <> are HTML and skip the regex check
-				match = [ null, selector, null ];
-
-			} else {
-				match = rquickExpr.exec( selector );
-			}
-
-			// Match html or make sure no context is specified for #id
-			if ( match && ( match[ 1 ] || !context ) ) {
-
-				// HANDLE: $(html) -> $(array)
-				if ( match[ 1 ] ) {
-					context = context instanceof jQuery ? context[ 0 ] : context;
-
-					// Option to run scripts is true for back-compat
-					// Intentionally let the error be thrown if parseHTML is not present
-					jQuery.merge( this, jQuery.parseHTML(
-						match[ 1 ],
-						context && context.nodeType ? context.ownerDocument || context : document,
-						true
-					) );
-
-					// HANDLE: $(html, props)
-					if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) {
-						for ( match in context ) {
-
-							// Properties of context are called as methods if possible
-							if ( isFunction( this[ match ] ) ) {
-								this[ match ]( context[ match ] );
-
-							// ...and otherwise set as attributes
-							} else {
-								this.attr( match, context[ match ] );
-							}
-						}
-					}
-
-					return this;
-
-				// HANDLE: $(#id)
-				} else {
-					elem = document.getElementById( match[ 2 ] );
-
-					if ( elem ) {
-
-						// Inject the element directly into the jQuery object
-						this[ 0 ] = elem;
-						this.length = 1;
-					}
-					return this;
-				}
-
-			// HANDLE: $(expr, $(...))
-			} else if ( !context || context.jquery ) {
-				return ( context || root ).find( selector );
-
-			// HANDLE: $(expr, context)
-			// (which is just equivalent to: $(context).find(expr)
-			} else {
-				return this.constructor( context ).find( selector );
-			}
-
-		// HANDLE: $(DOMElement)
-		} else if ( selector.nodeType ) {
-			this[ 0 ] = selector;
-			this.length = 1;
-			return this;
-
-		// HANDLE: $(function)
-		// Shortcut for document ready
-		} else if ( isFunction( selector ) ) {
-			return root.ready !== undefined ?
-				root.ready( selector ) :
-
-				// Execute immediately if ready is not present
-				selector( jQuery );
-		}
-
-		return jQuery.makeArray( selector, this );
-	};
-
-// Give the init function the jQuery prototype for later instantiation
-init.prototype = jQuery.fn;
-
-// Initialize central reference
-rootjQuery = jQuery( document );
-
-
-var rparentsprev = /^(?:parents|prev(?:Until|All))/,
-
-	// Methods guaranteed to produce a unique set when starting from a unique set
-	guaranteedUnique = {
-		children: true,
-		contents: true,
-		next: true,
-		prev: true
-	};
-
-jQuery.fn.extend( {
-	has: function( target ) {
-		var targets = jQuery( target, this ),
-			l = targets.length;
-
-		return this.filter( function() {
-			var i = 0;
-			for ( ; i < l; i++ ) {
-				if ( jQuery.contains( this, targets[ i ] ) ) {
-					return true;
-				}
-			}
-		} );
-	},
-
-	closest: function( selectors, context ) {
-		var cur,
-			i = 0,
-			l = this.length,
-			matched = [],
-			targets = typeof selectors !== "string" && jQuery( selectors );
-
-		// Positional selectors never match, since there's no _selection_ context
-		if ( !rneedsContext.test( selectors ) ) {
-			for ( ; i < l; i++ ) {
-				for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) {
-
-					// Always skip document fragments
-					if ( cur.nodeType < 11 && ( targets ?
-						targets.index( cur ) > -1 :
-
-						// Don't pass non-elements to Sizzle
-						cur.nodeType === 1 &&
-							jQuery.find.matchesSelector( cur, selectors ) ) ) {
-
-						matched.push( cur );
-						break;
-					}
-				}
-			}
-		}
-
-		return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched );
-	},
-
-	// Determine the position of an element within the set
-	index: function( elem ) {
-
-		// No argument, return index in parent
-		if ( !elem ) {
-			return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1;
-		}
-
-		// Index in selector
-		if ( typeof elem === "string" ) {
-			return indexOf.call( jQuery( elem ), this[ 0 ] );
-		}
-
-		// Locate the position of the desired element
-		return indexOf.call( this,
-
-			// If it receives a jQuery object, the first element is used
-			elem.jquery ? elem[ 0 ] : elem
-		);
-	},
-
-	add: function( selector, context ) {
-		return this.pushStack(
-			jQuery.uniqueSort(
-				jQuery.merge( this.get(), jQuery( selector, context ) )
-			)
-		);
-	},
-
-	addBack: function( selector ) {
-		return this.add( selector == null ?
-			this.prevObject : this.prevObject.filter( selector )
-		);
-	}
-} );
-
-function sibling( cur, dir ) {
-	while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {}
-	return cur;
-}
-
-jQuery.each( {
-	parent: function( elem ) {
-		var parent = elem.parentNode;
-		return parent && parent.nodeType !== 11 ? parent : null;
-	},
-	parents: function( elem ) {
-		return dir( elem, "parentNode" );
-	},
-	parentsUntil: function( elem, _i, until ) {
-		return dir( elem, "parentNode", until );
-	},
-	next: function( elem ) {
-		return sibling( elem, "nextSibling" );
-	},
-	prev: function( elem ) {
-		return sibling( elem, "previousSibling" );
-	},
-	nextAll: function( elem ) {
-		return dir( elem, "nextSibling" );
-	},
-	prevAll: function( elem ) {
-		return dir( elem, "previousSibling" );
-	},
-	nextUntil: function( elem, _i, until ) {
-		return dir( elem, "nextSibling", until );
-	},
-	prevUntil: function( elem, _i, until ) {
-		return dir( elem, "previousSibling", until );
-	},
-	siblings: function( elem ) {
-		return siblings( ( elem.parentNode || {} ).firstChild, elem );
-	},
-	children: function( elem ) {
-		return siblings( elem.firstChild );
-	},
-	contents: function( elem ) {
-		if ( elem.contentDocument != null &&
-
-			// Support: IE 11+
-			// <object> elements with no `data` attribute has an object
-			// `contentDocument` with a `null` prototype.
-			getProto( elem.contentDocument ) ) {
-
-			return elem.contentDocument;
-		}
-
-		// Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only
-		// Treat the template element as a regular one in browsers that
-		// don't support it.
-		if ( nodeName( elem, "template" ) ) {
-			elem = elem.content || elem;
-		}
-
-		return jQuery.merge( [], elem.childNodes );
-	}
-}, function( name, fn ) {
-	jQuery.fn[ name ] = function( until, selector ) {
-		var matched = jQuery.map( this, fn, until );
-
-		if ( name.slice( -5 ) !== "Until" ) {
-			selector = until;
-		}
-
-		if ( selector && typeof selector === "string" ) {
-			matched = jQuery.filter( selector, matched );
-		}
-
-		if ( this.length > 1 ) {
-
-			// Remove duplicates
-			if ( !guaranteedUnique[ name ] ) {
-				jQuery.uniqueSort( matched );
-			}
-
-			// Reverse order for parents* and prev-derivatives
-			if ( rparentsprev.test( name ) ) {
-				matched.reverse();
-			}
-		}
-
-		return this.pushStack( matched );
-	};
-} );
-var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g );
-
-
-
-// Convert String-formatted options into Object-formatted ones
-function createOptions( options ) {
-	var object = {};
-	jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) {
-		object[ flag ] = true;
-	} );
-	return object;
-}
-
-/*
- * Create a callback list using the following parameters:
- *
- *	options: an optional list of space-separated options that will change how
- *			the callback list behaves or a more traditional option object
- *
- * By default a callback list will act like an event callback list and can be
- * "fired" multiple times.
- *
- * Possible options:
- *
- *	once:			will ensure the callback list can only be fired once (like a Deferred)
- *
- *	memory:			will keep track of previous values and will call any callback added
- *					after the list has been fired right away with the latest "memorized"
- *					values (like a Deferred)
- *
- *	unique:			will ensure a callback can only be added once (no duplicate in the list)
- *
- *	stopOnFalse:	interrupt callings when a callback returns false
- *
- */
-jQuery.Callbacks = function( options ) {
-
-	// Convert options from String-formatted to Object-formatted if needed
-	// (we check in cache first)
-	options = typeof options === "string" ?
-		createOptions( options ) :
-		jQuery.extend( {}, options );
-
-	var // Flag to know if list is currently firing
-		firing,
-
-		// Last fire value for non-forgettable lists
-		memory,
-
-		// Flag to know if list was already fired
-		fired,
-
-		// Flag to prevent firing
-		locked,
-
-		// Actual callback list
-		list = [],
-
-		// Queue of execution data for repeatable lists
-		queue = [],
-
-		// Index of currently firing callback (modified by add/remove as needed)
-		firingIndex = -1,
-
-		// Fire callbacks
-		fire = function() {
-
-			// Enforce single-firing
-			locked = locked || options.once;
-
-			// Execute callbacks for all pending executions,
-			// respecting firingIndex overrides and runtime changes
-			fired = firing = true;
-			for ( ; queue.length; firingIndex = -1 ) {
-				memory = queue.shift();
-				while ( ++firingIndex < list.length ) {
-
-					// Run callback and check for early termination
-					if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false &&
-						options.stopOnFalse ) {
-
-						// Jump to end and forget the data so .add doesn't re-fire
-						firingIndex = list.length;
-						memory = false;
-					}
-				}
-			}
-
-			// Forget the data if we're done with it
-			if ( !options.memory ) {
-				memory = false;
-			}
-
-			firing = false;
-
-			// Clean up if we're done firing for good
-			if ( locked ) {
-
-				// Keep an empty list if we have data for future add calls
-				if ( memory ) {
-					list = [];
-
-				// Otherwise, this object is spent
-				} else {
-					list = "";
-				}
-			}
-		},
-
-		// Actual Callbacks object
-		self = {
-
-			// Add a callback or a collection of callbacks to the list
-			add: function() {
-				if ( list ) {
-
-					// If we have memory from a past run, we should fire after adding
-					if ( memory && !firing ) {
-						firingIndex = list.length - 1;
-						queue.push( memory );
-					}
-
-					( function add( args ) {
-						jQuery.each( args, function( _, arg ) {
-							if ( isFunction( arg ) ) {
-								if ( !options.unique || !self.has( arg ) ) {
-									list.push( arg );
-								}
-							} else if ( arg && arg.length && toType( arg ) !== "string" ) {
-
-								// Inspect recursively
-								add( arg );
-							}
-						} );
-					} )( arguments );
-
-					if ( memory && !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Remove a callback from the list
-			remove: function() {
-				jQuery.each( arguments, function( _, arg ) {
-					var index;
-					while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) {
-						list.splice( index, 1 );
-
-						// Handle firing indexes
-						if ( index <= firingIndex ) {
-							firingIndex--;
-						}
-					}
-				} );
-				return this;
-			},
-
-			// Check if a given callback is in the list.
-			// If no argument is given, return whether or not list has callbacks attached.
-			has: function( fn ) {
-				return fn ?
-					jQuery.inArray( fn, list ) > -1 :
-					list.length > 0;
-			},
-
-			// Remove all callbacks from the list
-			empty: function() {
-				if ( list ) {
-					list = [];
-				}
-				return this;
-			},
-
-			// Disable .fire and .add
-			// Abort any current/pending executions
-			// Clear all callbacks and values
-			disable: function() {
-				locked = queue = [];
-				list = memory = "";
-				return this;
-			},
-			disabled: function() {
-				return !list;
-			},
-
-			// Disable .fire
-			// Also disable .add unless we have memory (since it would have no effect)
-			// Abort any pending executions
-			lock: function() {
-				locked = queue = [];
-				if ( !memory && !firing ) {
-					list = memory = "";
-				}
-				return this;
-			},
-			locked: function() {
-				return !!locked;
-			},
-
-			// Call all callbacks with the given context and arguments
-			fireWith: function( context, args ) {
-				if ( !locked ) {
-					args = args || [];
-					args = [ context, args.slice ? args.slice() : args ];
-					queue.push( args );
-					if ( !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Call all the callbacks with the given arguments
-			fire: function() {
-				self.fireWith( this, arguments );
-				return this;
-			},
-
-			// To know if the callbacks have already been called at least once
-			fired: function() {
-				return !!fired;
-			}
-		};
-
-	return self;
-};
-
-
-function Identity( v ) {
-	return v;
-}
-function Thrower( ex ) {
-	throw ex;
-}
-
-function adoptValue( value, resolve, reject, noValue ) {
-	var method;
-
-	try {
-
-		// Check for promise aspect first to privilege synchronous behavior
-		if ( value && isFunction( ( method = value.promise ) ) ) {
-			method.call( value ).done( resolve ).fail( reject );
-
-		// Other thenables
-		} else if ( value && isFunction( ( method = value.then ) ) ) {
-			method.call( value, resolve, reject );
-
-		// Other non-thenables
-		} else {
-
-			// Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer:
-			// * false: [ value ].slice( 0 ) => resolve( value )
-			// * true: [ value ].slice( 1 ) => resolve()
-			resolve.apply( undefined, [ value ].slice( noValue ) );
-		}
-
-	// For Promises/A+, convert exceptions into rejections
-	// Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in
-	// Deferred#then to conditionally suppress rejection.
-	} catch ( value ) {
-
-		// Support: Android 4.0 only
-		// Strict mode functions invoked without .call/.apply get global-object context
-		reject.apply( undefined, [ value ] );
-	}
-}
-
-jQuery.extend( {
-
-	Deferred: function( func ) {
-		var tuples = [
-
-				// action, add listener, callbacks,
-				// ... .then handlers, argument index, [final state]
-				[ "notify", "progress", jQuery.Callbacks( "memory" ),
-					jQuery.Callbacks( "memory" ), 2 ],
-				[ "resolve", "done", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 0, "resolved" ],
-				[ "reject", "fail", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 1, "rejected" ]
-			],
-			state = "pending",
-			promise = {
-				state: function() {
-					return state;
-				},
-				always: function() {
-					deferred.done( arguments ).fail( arguments );
-					return this;
-				},
-				"catch": function( fn ) {
-					return promise.then( null, fn );
-				},
-
-				// Keep pipe for back-compat
-				pipe: function( /* fnDone, fnFail, fnProgress */ ) {
-					var fns = arguments;
-
-					return jQuery.Deferred( function( newDefer ) {
-						jQuery.each( tuples, function( _i, tuple ) {
-
-							// Map tuples (progress, done, fail) to arguments (done, fail, progress)
-							var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ];
-
-							// deferred.progress(function() { bind to newDefer or newDefer.notify })
-							// deferred.done(function() { bind to newDefer or newDefer.resolve })
-							// deferred.fail(function() { bind to newDefer or newDefer.reject })
-							deferred[ tuple[ 1 ] ]( function() {
-								var returned = fn && fn.apply( this, arguments );
-								if ( returned && isFunction( returned.promise ) ) {
-									returned.promise()
-										.progress( newDefer.notify )
-										.done( newDefer.resolve )
-										.fail( newDefer.reject );
-								} else {
-									newDefer[ tuple[ 0 ] + "With" ](
-										this,
-										fn ? [ returned ] : arguments
-									);
-								}
-							} );
-						} );
-						fns = null;
-					} ).promise();
-				},
-				then: function( onFulfilled, onRejected, onProgress ) {
-					var maxDepth = 0;
-					function resolve( depth, deferred, handler, special ) {
-						return function() {
-							var that = this,
-								args = arguments,
-								mightThrow = function() {
-									var returned, then;
-
-									// Support: Promises/A+ section 2.3.3.3.3
-									// https://promisesaplus.com/#point-59
-									// Ignore double-resolution attempts
-									if ( depth < maxDepth ) {
-										return;
-									}
-
-									returned = handler.apply( that, args );
-
-									// Support: Promises/A+ section 2.3.1
-									// https://promisesaplus.com/#point-48
-									if ( returned === deferred.promise() ) {
-										throw new TypeError( "Thenable self-resolution" );
-									}
-
-									// Support: Promises/A+ sections 2.3.3.1, 3.5
-									// https://promisesaplus.com/#point-54
-									// https://promisesaplus.com/#point-75
-									// Retrieve `then` only once
-									then = returned &&
-
-										// Support: Promises/A+ section 2.3.4
-										// https://promisesaplus.com/#point-64
-										// Only check objects and functions for thenability
-										( typeof returned === "object" ||
-											typeof returned === "function" ) &&
-										returned.then;
-
-									// Handle a returned thenable
-									if ( isFunction( then ) ) {
-
-										// Special processors (notify) just wait for resolution
-										if ( special ) {
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special )
-											);
-
-										// Normal processors (resolve) also hook into progress
-										} else {
-
-											// ...and disregard older resolution values
-											maxDepth++;
-
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special ),
-												resolve( maxDepth, deferred, Identity,
-													deferred.notifyWith )
-											);
-										}
-
-									// Handle all other returned values
-									} else {
-
-										// Only substitute handlers pass on context
-										// and multiple values (non-spec behavior)
-										if ( handler !== Identity ) {
-											that = undefined;
-											args = [ returned ];
-										}
-
-										// Process the value(s)
-										// Default process is resolve
-										( special || deferred.resolveWith )( that, args );
-									}
-								},
-
-								// Only normal processors (resolve) catch and reject exceptions
-								process = special ?
-									mightThrow :
-									function() {
-										try {
-											mightThrow();
-										} catch ( e ) {
-
-											if ( jQuery.Deferred.exceptionHook ) {
-												jQuery.Deferred.exceptionHook( e,
-													process.stackTrace );
-											}
-
-											// Support: Promises/A+ section 2.3.3.3.4.1
-											// https://promisesaplus.com/#point-61
-											// Ignore post-resolution exceptions
-											if ( depth + 1 >= maxDepth ) {
-
-												// Only substitute handlers pass on context
-												// and multiple values (non-spec behavior)
-												if ( handler !== Thrower ) {
-													that = undefined;
-													args = [ e ];
-												}
-
-												deferred.rejectWith( that, args );
-											}
-										}
-									};
-
-							// Support: Promises/A+ section 2.3.3.3.1
-							// https://promisesaplus.com/#point-57
-							// Re-resolve promises immediately to dodge false rejection from
-							// subsequent errors
-							if ( depth ) {
-								process();
-							} else {
-
-								// Call an optional hook to record the stack, in case of exception
-								// since it's otherwise lost when execution goes async
-								if ( jQuery.Deferred.getStackHook ) {
-									process.stackTrace = jQuery.Deferred.getStackHook();
-								}
-								window.setTimeout( process );
-							}
-						};
-					}
-
-					return jQuery.Deferred( function( newDefer ) {
-
-						// progress_handlers.add( ... )
-						tuples[ 0 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onProgress ) ?
-									onProgress :
-									Identity,
-								newDefer.notifyWith
-							)
-						);
-
-						// fulfilled_handlers.add( ... )
-						tuples[ 1 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onFulfilled ) ?
-									onFulfilled :
-									Identity
-							)
-						);
-
-						// rejected_handlers.add( ... )
-						tuples[ 2 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onRejected ) ?
-									onRejected :
-									Thrower
-							)
-						);
-					} ).promise();
-				},
-
-				// Get a promise for this deferred
-				// If obj is provided, the promise aspect is added to the object
-				promise: function( obj ) {
-					return obj != null ? jQuery.extend( obj, promise ) : promise;
-				}
-			},
-			deferred = {};
-
-		// Add list-specific methods
-		jQuery.each( tuples, function( i, tuple ) {
-			var list = tuple[ 2 ],
-				stateString = tuple[ 5 ];
-
-			// promise.progress = list.add
-			// promise.done = list.add
-			// promise.fail = list.add
-			promise[ tuple[ 1 ] ] = list.add;
-
-			// Handle state
-			if ( stateString ) {
-				list.add(
-					function() {
-
-						// state = "resolved" (i.e., fulfilled)
-						// state = "rejected"
-						state = stateString;
-					},
-
-					// rejected_callbacks.disable
-					// fulfilled_callbacks.disable
-					tuples[ 3 - i ][ 2 ].disable,
-
-					// rejected_handlers.disable
-					// fulfilled_handlers.disable
-					tuples[ 3 - i ][ 3 ].disable,
-
-					// progress_callbacks.lock
-					tuples[ 0 ][ 2 ].lock,
-
-					// progress_handlers.lock
-					tuples[ 0 ][ 3 ].lock
-				);
-			}
-
-			// progress_handlers.fire
-			// fulfilled_handlers.fire
-			// rejected_handlers.fire
-			list.add( tuple[ 3 ].fire );
-
-			// deferred.notify = function() { deferred.notifyWith(...) }
-			// deferred.resolve = function() { deferred.resolveWith(...) }
-			// deferred.reject = function() { deferred.rejectWith(...) }
-			deferred[ tuple[ 0 ] ] = function() {
-				deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments );
-				return this;
-			};
-
-			// deferred.notifyWith = list.fireWith
-			// deferred.resolveWith = list.fireWith
-			// deferred.rejectWith = list.fireWith
-			deferred[ tuple[ 0 ] + "With" ] = list.fireWith;
-		} );
-
-		// Make the deferred a promise
-		promise.promise( deferred );
-
-		// Call given func if any
-		if ( func ) {
-			func.call( deferred, deferred );
-		}
-
-		// All done!
-		return deferred;
-	},
-
-	// Deferred helper
-	when: function( singleValue ) {
-		var
-
-			// count of uncompleted subordinates
-			remaining = arguments.length,
-
-			// count of unprocessed arguments
-			i = remaining,
-
-			// subordinate fulfillment data
-			resolveContexts = Array( i ),
-			resolveValues = slice.call( arguments ),
-
-			// the primary Deferred
-			primary = jQuery.Deferred(),
-
-			// subordinate callback factory
-			updateFunc = function( i ) {
-				return function( value ) {
-					resolveContexts[ i ] = this;
-					resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value;
-					if ( !( --remaining ) ) {
-						primary.resolveWith( resolveContexts, resolveValues );
-					}
-				};
-			};
-
-		// Single- and empty arguments are adopted like Promise.resolve
-		if ( remaining <= 1 ) {
-			adoptValue( singleValue, primary.done( updateFunc( i ) ).resolve, primary.reject,
-				!remaining );
-
-			// Use .then() to unwrap secondary thenables (cf. gh-3000)
-			if ( primary.state() === "pending" ||
-				isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) {
-
-				return primary.then();
-			}
-		}
-
-		// Multiple arguments are aggregated like Promise.all array elements
-		while ( i-- ) {
-			adoptValue( resolveValues[ i ], updateFunc( i ), primary.reject );
-		}
-
-		return primary.promise();
-	}
-} );
-
-
-// These usually indicate a programmer mistake during development,
-// warn about them ASAP rather than swallowing them by default.
-var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/;
-
-jQuery.Deferred.exceptionHook = function( error, stack ) {
-
-	// Support: IE 8 - 9 only
-	// Console exists when dev tools are open, which can happen at any time
-	if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) {
-		window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack );
-	}
-};
-
-
-
-
-jQuery.readyException = function( error ) {
-	window.setTimeout( function() {
-		throw error;
-	} );
-};
-
-
-
-
-// The deferred used on DOM ready
-var readyList = jQuery.Deferred();
-
-jQuery.fn.ready = function( fn ) {
-
-	readyList
-		.then( fn )
-
-		// Wrap jQuery.readyException in a function so that the lookup
-		// happens at the time of error handling instead of callback
-		// registration.
-		.catch( function( error ) {
-			jQuery.readyException( error );
-		} );
-
-	return this;
-};
-
-jQuery.extend( {
-
-	// Is the DOM ready to be used? Set to true once it occurs.
-	isReady: false,
-
-	// A counter to track how many items to wait for before
-	// the ready event fires. See #6781
-	readyWait: 1,
-
-	// Handle when the DOM is ready
-	ready: function( wait ) {
-
-		// Abort if there are pending holds or we're already ready
-		if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) {
-			return;
-		}
-
-		// Remember that the DOM is ready
-		jQuery.isReady = true;
-
-		// If a normal DOM Ready event fired, decrement, and wait if need be
-		if ( wait !== true && --jQuery.readyWait > 0 ) {
-			return;
-		}
-
-		// If there are functions bound, to execute
-		readyList.resolveWith( document, [ jQuery ] );
-	}
-} );
-
-jQuery.ready.then = readyList.then;
-
-// The ready event handler and self cleanup method
-function completed() {
-	document.removeEventListener( "DOMContentLoaded", completed );
-	window.removeEventListener( "load", completed );
-	jQuery.ready();
-}
-
-// Catch cases where $(document).ready() is called
-// after the browser event has already occurred.
-// Support: IE <=9 - 10 only
-// Older IE sometimes signals "interactive" too soon
-if ( document.readyState === "complete" ||
-	( document.readyState !== "loading" && !document.documentElement.doScroll ) ) {
-
-	// Handle it asynchronously to allow scripts the opportunity to delay ready
-	window.setTimeout( jQuery.ready );
-
-} else {
-
-	// Use the handy event callback
-	document.addEventListener( "DOMContentLoaded", completed );
-
-	// A fallback to window.onload, that will always work
-	window.addEventListener( "load", completed );
-}
-
-
-
-
-// Multifunctional method to get and set values of a collection
-// The value/s can optionally be executed if it's a function
-var access = function( elems, fn, key, value, chainable, emptyGet, raw ) {
-	var i = 0,
-		len = elems.length,
-		bulk = key == null;
-
-	// Sets many values
-	if ( toType( key ) === "object" ) {
-		chainable = true;
-		for ( i in key ) {
-			access( elems, fn, i, key[ i ], true, emptyGet, raw );
-		}
-
-	// Sets one value
-	} else if ( value !== undefined ) {
-		chainable = true;
-
-		if ( !isFunction( value ) ) {
-			raw = true;
-		}
-
-		if ( bulk ) {
-
-			// Bulk operations run against the entire set
-			if ( raw ) {
-				fn.call( elems, value );
-				fn = null;
-
-			// ...except when executing function values
-			} else {
-				bulk = fn;
-				fn = function( elem, _key, value ) {
-					return bulk.call( jQuery( elem ), value );
-				};
-			}
-		}
-
-		if ( fn ) {
-			for ( ; i < len; i++ ) {
-				fn(
-					elems[ i ], key, raw ?
-						value :
-						value.call( elems[ i ], i, fn( elems[ i ], key ) )
-				);
-			}
-		}
-	}
-
-	if ( chainable ) {
-		return elems;
-	}
-
-	// Gets
-	if ( bulk ) {
-		return fn.call( elems );
-	}
-
-	return len ? fn( elems[ 0 ], key ) : emptyGet;
-};
-
-
-// Matches dashed string for camelizing
-var rmsPrefix = /^-ms-/,
-	rdashAlpha = /-([a-z])/g;
-
-// Used by camelCase as callback to replace()
-function fcamelCase( _all, letter ) {
-	return letter.toUpperCase();
-}
-
-// Convert dashed to camelCase; used by the css and data modules
-// Support: IE <=9 - 11, Edge 12 - 15
-// Microsoft forgot to hump their vendor prefix (#9572)
-function camelCase( string ) {
-	return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase );
-}
-var acceptData = function( owner ) {
-
-	// Accepts only:
-	//  - Node
-	//    - Node.ELEMENT_NODE
-	//    - Node.DOCUMENT_NODE
-	//  - Object
-	//    - Any
-	return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType );
-};
-
-
-
-
-function Data() {
-	this.expando = jQuery.expando + Data.uid++;
-}
-
-Data.uid = 1;
-
-Data.prototype = {
-
-	cache: function( owner ) {
-
-		// Check if the owner object already has a cache
-		var value = owner[ this.expando ];
-
-		// If not, create one
-		if ( !value ) {
-			value = {};
-
-			// We can accept data for non-element nodes in modern browsers,
-			// but we should not, see #8335.
-			// Always return an empty object.
-			if ( acceptData( owner ) ) {
-
-				// If it is a node unlikely to be stringify-ed or looped over
-				// use plain assignment
-				if ( owner.nodeType ) {
-					owner[ this.expando ] = value;
-
-				// Otherwise secure it in a non-enumerable property
-				// configurable must be true to allow the property to be
-				// deleted when data is removed
-				} else {
-					Object.defineProperty( owner, this.expando, {
-						value: value,
-						configurable: true
-					} );
-				}
-			}
-		}
-
-		return value;
-	},
-	set: function( owner, data, value ) {
-		var prop,
-			cache = this.cache( owner );
-
-		// Handle: [ owner, key, value ] args
-		// Always use camelCase key (gh-2257)
-		if ( typeof data === "string" ) {
-			cache[ camelCase( data ) ] = value;
-
-		// Handle: [ owner, { properties } ] args
-		} else {
-
-			// Copy the properties one-by-one to the cache object
-			for ( prop in data ) {
-				cache[ camelCase( prop ) ] = data[ prop ];
-			}
-		}
-		return cache;
-	},
-	get: function( owner, key ) {
-		return key === undefined ?
-			this.cache( owner ) :
-
-			// Always use camelCase key (gh-2257)
-			owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ];
-	},
-	access: function( owner, key, value ) {
-
-		// In cases where either:
-		//
-		//   1. No key was specified
-		//   2. A string key was specified, but no value provided
-		//
-		// Take the "read" path and allow the get method to determine
-		// which value to return, respectively either:
-		//
-		//   1. The entire cache object
-		//   2. The data stored at the key
-		//
-		if ( key === undefined ||
-				( ( key && typeof key === "string" ) && value === undefined ) ) {
-
-			return this.get( owner, key );
-		}
-
-		// When the key is not a string, or both a key and value
-		// are specified, set or extend (existing objects) with either:
-		//
-		//   1. An object of properties
-		//   2. A key and value
-		//
-		this.set( owner, key, value );
-
-		// Since the "set" path can have two possible entry points
-		// return the expected data based on which path was taken[*]
-		return value !== undefined ? value : key;
-	},
-	remove: function( owner, key ) {
-		var i,
-			cache = owner[ this.expando ];
-
-		if ( cache === undefined ) {
-			return;
-		}
-
-		if ( key !== undefined ) {
-
-			// Support array or space separated string of keys
-			if ( Array.isArray( key ) ) {
-
-				// If key is an array of keys...
-				// We always set camelCase keys, so remove that.
-				key = key.map( camelCase );
-			} else {
-				key = camelCase( key );
-
-				// If a key with the spaces exists, use it.
-				// Otherwise, create an array by matching non-whitespace
-				key = key in cache ?
-					[ key ] :
-					( key.match( rnothtmlwhite ) || [] );
-			}
-
-			i = key.length;
-
-			while ( i-- ) {
-				delete cache[ key[ i ] ];
-			}
-		}
-
-		// Remove the expando if there's no more data
-		if ( key === undefined || jQuery.isEmptyObject( cache ) ) {
-
-			// Support: Chrome <=35 - 45
-			// Webkit & Blink performance suffers when deleting properties
-			// from DOM nodes, so set to undefined instead
-			// https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted)
-			if ( owner.nodeType ) {
-				owner[ this.expando ] = undefined;
-			} else {
-				delete owner[ this.expando ];
-			}
-		}
-	},
-	hasData: function( owner ) {
-		var cache = owner[ this.expando ];
-		return cache !== undefined && !jQuery.isEmptyObject( cache );
-	}
-};
-var dataPriv = new Data();
-
-var dataUser = new Data();
-
-
-
-//	Implementation Summary
-//
-//	1. Enforce API surface and semantic compatibility with 1.9.x branch
-//	2. Improve the module's maintainability by reducing the storage
-//		paths to a single mechanism.
-//	3. Use the same single mechanism to support "private" and "user" data.
-//	4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData)
-//	5. Avoid exposing implementation details on user objects (eg. expando properties)
-//	6. Provide a clear path for implementation upgrade to WeakMap in 2014
-
-var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/,
-	rmultiDash = /[A-Z]/g;
-
-function getData( data ) {
-	if ( data === "true" ) {
-		return true;
-	}
-
-	if ( data === "false" ) {
-		return false;
-	}
-
-	if ( data === "null" ) {
-		return null;
-	}
-
-	// Only convert to a number if it doesn't change the string
-	if ( data === +data + "" ) {
-		return +data;
-	}
-
-	if ( rbrace.test( data ) ) {
-		return JSON.parse( data );
-	}
-
-	return data;
-}
-
-function dataAttr( elem, key, data ) {
-	var name;
-
-	// If nothing was found internally, try to fetch any
-	// data from the HTML5 data-* attribute
-	if ( data === undefined && elem.nodeType === 1 ) {
-		name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase();
-		data = elem.getAttribute( name );
-
-		if ( typeof data === "string" ) {
-			try {
-				data = getData( data );
-			} catch ( e ) {}
-
-			// Make sure we set the data so it isn't changed later
-			dataUser.set( elem, key, data );
-		} else {
-			data = undefined;
-		}
-	}
-	return data;
-}
-
-jQuery.extend( {
-	hasData: function( elem ) {
-		return dataUser.hasData( elem ) || dataPriv.hasData( elem );
-	},
-
-	data: function( elem, name, data ) {
-		return dataUser.access( elem, name, data );
-	},
-
-	removeData: function( elem, name ) {
-		dataUser.remove( elem, name );
-	},
-
-	// TODO: Now that all calls to _data and _removeData have been replaced
-	// with direct calls to dataPriv methods, these can be deprecated.
-	_data: function( elem, name, data ) {
-		return dataPriv.access( elem, name, data );
-	},
-
-	_removeData: function( elem, name ) {
-		dataPriv.remove( elem, name );
-	}
-} );
-
-jQuery.fn.extend( {
-	data: function( key, value ) {
-		var i, name, data,
-			elem = this[ 0 ],
-			attrs = elem && elem.attributes;
-
-		// Gets all values
-		if ( key === undefined ) {
-			if ( this.length ) {
-				data = dataUser.get( elem );
-
-				if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) {
-					i = attrs.length;
-					while ( i-- ) {
-
-						// Support: IE 11 only
-						// The attrs elements can be null (#14894)
-						if ( attrs[ i ] ) {
-							name = attrs[ i ].name;
-							if ( name.indexOf( "data-" ) === 0 ) {
-								name = camelCase( name.slice( 5 ) );
-								dataAttr( elem, name, data[ name ] );
-							}
-						}
-					}
-					dataPriv.set( elem, "hasDataAttrs", true );
-				}
-			}
-
-			return data;
-		}
-
-		// Sets multiple values
-		if ( typeof key === "object" ) {
-			return this.each( function() {
-				dataUser.set( this, key );
-			} );
-		}
-
-		return access( this, function( value ) {
-			var data;
-
-			// The calling jQuery object (element matches) is not empty
-			// (and therefore has an element appears at this[ 0 ]) and the
-			// `value` parameter was not undefined. An empty jQuery object
-			// will result in `undefined` for elem = this[ 0 ] which will
-			// throw an exception if an attempt to read a data cache is made.
-			if ( elem && value === undefined ) {
-
-				// Attempt to get data from the cache
-				// The key will always be camelCased in Data
-				data = dataUser.get( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// Attempt to "discover" the data in
-				// HTML5 custom data-* attrs
-				data = dataAttr( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// We tried really hard, but the data doesn't exist.
-				return;
-			}
-
-			// Set the data...
-			this.each( function() {
-
-				// We always store the camelCased key
-				dataUser.set( this, key, value );
-			} );
-		}, null, value, arguments.length > 1, null, true );
-	},
-
-	removeData: function( key ) {
-		return this.each( function() {
-			dataUser.remove( this, key );
-		} );
-	}
-} );
-
-
-jQuery.extend( {
-	queue: function( elem, type, data ) {
-		var queue;
-
-		if ( elem ) {
-			type = ( type || "fx" ) + "queue";
-			queue = dataPriv.get( elem, type );
-
-			// Speed up dequeue by getting out quickly if this is just a lookup
-			if ( data ) {
-				if ( !queue || Array.isArray( data ) ) {
-					queue = dataPriv.access( elem, type, jQuery.makeArray( data ) );
-				} else {
-					queue.push( data );
-				}
-			}
-			return queue || [];
-		}
-	},
-
-	dequeue: function( elem, type ) {
-		type = type || "fx";
-
-		var queue = jQuery.queue( elem, type ),
-			startLength = queue.length,
-			fn = queue.shift(),
-			hooks = jQuery._queueHooks( elem, type ),
-			next = function() {
-				jQuery.dequeue( elem, type );
-			};
-
-		// If the fx queue is dequeued, always remove the progress sentinel
-		if ( fn === "inprogress" ) {
-			fn = queue.shift();
-			startLength--;
-		}
-
-		if ( fn ) {
-
-			// Add a progress sentinel to prevent the fx queue from being
-			// automatically dequeued
-			if ( type === "fx" ) {
-				queue.unshift( "inprogress" );
-			}
-
-			// Clear up the last queue stop function
-			delete hooks.stop;
-			fn.call( elem, next, hooks );
-		}
-
-		if ( !startLength && hooks ) {
-			hooks.empty.fire();
-		}
-	},
-
-	// Not public - generate a queueHooks object, or return the current one
-	_queueHooks: function( elem, type ) {
-		var key = type + "queueHooks";
-		return dataPriv.get( elem, key ) || dataPriv.access( elem, key, {
-			empty: jQuery.Callbacks( "once memory" ).add( function() {
-				dataPriv.remove( elem, [ type + "queue", key ] );
-			} )
-		} );
-	}
-} );
-
-jQuery.fn.extend( {
-	queue: function( type, data ) {
-		var setter = 2;
-
-		if ( typeof type !== "string" ) {
-			data = type;
-			type = "fx";
-			setter--;
-		}
-
-		if ( arguments.length < setter ) {
-			return jQuery.queue( this[ 0 ], type );
-		}
-
-		return data === undefined ?
-			this :
-			this.each( function() {
-				var queue = jQuery.queue( this, type, data );
-
-				// Ensure a hooks for this queue
-				jQuery._queueHooks( this, type );
-
-				if ( type === "fx" && queue[ 0 ] !== "inprogress" ) {
-					jQuery.dequeue( this, type );
-				}
-			} );
-	},
-	dequeue: function( type ) {
-		return this.each( function() {
-			jQuery.dequeue( this, type );
-		} );
-	},
-	clearQueue: function( type ) {
-		return this.queue( type || "fx", [] );
-	},
-
-	// Get a promise resolved when queues of a certain type
-	// are emptied (fx is the type by default)
-	promise: function( type, obj ) {
-		var tmp,
-			count = 1,
-			defer = jQuery.Deferred(),
-			elements = this,
-			i = this.length,
-			resolve = function() {
-				if ( !( --count ) ) {
-					defer.resolveWith( elements, [ elements ] );
-				}
-			};
-
-		if ( typeof type !== "string" ) {
-			obj = type;
-			type = undefined;
-		}
-		type = type || "fx";
-
-		while ( i-- ) {
-			tmp = dataPriv.get( elements[ i ], type + "queueHooks" );
-			if ( tmp && tmp.empty ) {
-				count++;
-				tmp.empty.add( resolve );
-			}
-		}
-		resolve();
-		return defer.promise( obj );
-	}
-} );
-var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source;
-
-var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" );
-
-
-var cssExpand = [ "Top", "Right", "Bottom", "Left" ];
-
-var documentElement = document.documentElement;
-
-
-
-	var isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem );
-		},
-		composed = { composed: true };
-
-	// Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only
-	// Check attachment across shadow DOM boundaries when possible (gh-3504)
-	// Support: iOS 10.0-10.2 only
-	// Early iOS 10 versions support `attachShadow` but not `getRootNode`,
-	// leading to errors. We need to check for `getRootNode`.
-	if ( documentElement.getRootNode ) {
-		isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem ) ||
-				elem.getRootNode( composed ) === elem.ownerDocument;
-		};
-	}
-var isHiddenWithinTree = function( elem, el ) {
-
-		// isHiddenWithinTree might be called from jQuery#filter function;
-		// in that case, element will be second argument
-		elem = el || elem;
-
-		// Inline style trumps all
-		return elem.style.display === "none" ||
-			elem.style.display === "" &&
-
-			// Otherwise, check computed style
-			// Support: Firefox <=43 - 45
-			// Disconnected elements can have computed display: none, so first confirm that elem is
-			// in the document.
-			isAttached( elem ) &&
-
-			jQuery.css( elem, "display" ) === "none";
-	};
-
-
-
-function adjustCSS( elem, prop, valueParts, tween ) {
-	var adjusted, scale,
-		maxIterations = 20,
-		currentValue = tween ?
-			function() {
-				return tween.cur();
-			} :
-			function() {
-				return jQuery.css( elem, prop, "" );
-			},
-		initial = currentValue(),
-		unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ),
-
-		// Starting value computation is required for potential unit mismatches
-		initialInUnit = elem.nodeType &&
-			( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) &&
-			rcssNum.exec( jQuery.css( elem, prop ) );
-
-	if ( initialInUnit && initialInUnit[ 3 ] !== unit ) {
-
-		// Support: Firefox <=54
-		// Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144)
-		initial = initial / 2;
-
-		// Trust units reported by jQuery.css
-		unit = unit || initialInUnit[ 3 ];
-
-		// Iteratively approximate from a nonzero starting point
-		initialInUnit = +initial || 1;
-
-		while ( maxIterations-- ) {
-
-			// Evaluate and update our best guess (doubling guesses that zero out).
-			// Finish if the scale equals or crosses 1 (making the old*new product non-positive).
-			jQuery.style( elem, prop, initialInUnit + unit );
-			if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) {
-				maxIterations = 0;
-			}
-			initialInUnit = initialInUnit / scale;
-
-		}
-
-		initialInUnit = initialInUnit * 2;
-		jQuery.style( elem, prop, initialInUnit + unit );
-
-		// Make sure we update the tween properties later on
-		valueParts = valueParts || [];
-	}
-
-	if ( valueParts ) {
-		initialInUnit = +initialInUnit || +initial || 0;
-
-		// Apply relative offset (+=/-=) if specified
-		adjusted = valueParts[ 1 ] ?
-			initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] :
-			+valueParts[ 2 ];
-		if ( tween ) {
-			tween.unit = unit;
-			tween.start = initialInUnit;
-			tween.end = adjusted;
-		}
-	}
-	return adjusted;
-}
-
-
-var defaultDisplayMap = {};
-
-function getDefaultDisplay( elem ) {
-	var temp,
-		doc = elem.ownerDocument,
-		nodeName = elem.nodeName,
-		display = defaultDisplayMap[ nodeName ];
-
-	if ( display ) {
-		return display;
-	}
-
-	temp = doc.body.appendChild( doc.createElement( nodeName ) );
-	display = jQuery.css( temp, "display" );
-
-	temp.parentNode.removeChild( temp );
-
-	if ( display === "none" ) {
-		display = "block";
-	}
-	defaultDisplayMap[ nodeName ] = display;
-
-	return display;
-}
-
-function showHide( elements, show ) {
-	var display, elem,
-		values = [],
-		index = 0,
-		length = elements.length;
-
-	// Determine new display value for elements that need to change
-	for ( ; index < length; index++ ) {
-		elem = elements[ index ];
-		if ( !elem.style ) {
-			continue;
-		}
-
-		display = elem.style.display;
-		if ( show ) {
-
-			// Since we force visibility upon cascade-hidden elements, an immediate (and slow)
-			// check is required in this first loop unless we have a nonempty display value (either
-			// inline or about-to-be-restored)
-			if ( display === "none" ) {
-				values[ index ] = dataPriv.get( elem, "display" ) || null;
-				if ( !values[ index ] ) {
-					elem.style.display = "";
-				}
-			}
-			if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) {
-				values[ index ] = getDefaultDisplay( elem );
-			}
-		} else {
-			if ( display !== "none" ) {
-				values[ index ] = "none";
-
-				// Remember what we're overwriting
-				dataPriv.set( elem, "display", display );
-			}
-		}
-	}
-
-	// Set the display of the elements in a second loop to avoid constant reflow
-	for ( index = 0; index < length; index++ ) {
-		if ( values[ index ] != null ) {
-			elements[ index ].style.display = values[ index ];
-		}
-	}
-
-	return elements;
-}
-
-jQuery.fn.extend( {
-	show: function() {
-		return showHide( this, true );
-	},
-	hide: function() {
-		return showHide( this );
-	},
-	toggle: function( state ) {
-		if ( typeof state === "boolean" ) {
-			return state ? this.show() : this.hide();
-		}
-
-		return this.each( function() {
-			if ( isHiddenWithinTree( this ) ) {
-				jQuery( this ).show();
-			} else {
-				jQuery( this ).hide();
-			}
-		} );
-	}
-} );
-var rcheckableType = ( /^(?:checkbox|radio)$/i );
-
-var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i );
-
-var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i );
-
-
-
-( function() {
-	var fragment = document.createDocumentFragment(),
-		div = fragment.appendChild( document.createElement( "div" ) ),
-		input = document.createElement( "input" );
-
-	// Support: Android 4.0 - 4.3 only
-	// Check state lost if the name is set (#11217)
-	// Support: Windows Web Apps (WWA)
-	// `name` and `type` must use .setAttribute for WWA (#14901)
-	input.setAttribute( "type", "radio" );
-	input.setAttribute( "checked", "checked" );
-	input.setAttribute( "name", "t" );
-
-	div.appendChild( input );
-
-	// Support: Android <=4.1 only
-	// Older WebKit doesn't clone checked state correctly in fragments
-	support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked;
-
-	// Support: IE <=11 only
-	// Make sure textarea (and checkbox) defaultValue is properly cloned
-	div.innerHTML = "<textarea>x</textarea>";
-	support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue;
-
-	// Support: IE <=9 only
-	// IE <=9 replaces <option> tags with their contents when inserted outside of
-	// the select element.
-	div.innerHTML = "<option></option>";
-	support.option = !!div.lastChild;
-} )();
-
-
-// We have to close these tags to support XHTML (#13200)
-var wrapMap = {
-
-	// XHTML parsers do not magically insert elements in the
-	// same way that tag soup parsers do. So we cannot shorten
-	// this by omitting <tbody> or other required elements.
-	thead: [ 1, "<table>", "</table>" ],
-	col: [ 2, "<table><colgroup>", "</colgroup></table>" ],
-	tr: [ 2, "<table><tbody>", "</tbody></table>" ],
-	td: [ 3, "<table><tbody><tr>", "</tr></tbody></table>" ],
-
-	_default: [ 0, "", "" ]
-};
-
-wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead;
-wrapMap.th = wrapMap.td;
-
-// Support: IE <=9 only
-if ( !support.option ) {
-	wrapMap.optgroup = wrapMap.option = [ 1, "<select multiple='multiple'>", "</select>" ];
-}
-
-
-function getAll( context, tag ) {
-
-	// Support: IE <=9 - 11 only
-	// Use typeof to avoid zero-argument method invocation on host objects (#15151)
-	var ret;
-
-	if ( typeof context.getElementsByTagName !== "undefined" ) {
-		ret = context.getElementsByTagName( tag || "*" );
-
-	} else if ( typeof context.querySelectorAll !== "undefined" ) {
-		ret = context.querySelectorAll( tag || "*" );
-
-	} else {
-		ret = [];
-	}
-
-	if ( tag === undefined || tag && nodeName( context, tag ) ) {
-		return jQuery.merge( [ context ], ret );
-	}
-
-	return ret;
-}
-
-
-// Mark scripts as having already been evaluated
-function setGlobalEval( elems, refElements ) {
-	var i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		dataPriv.set(
-			elems[ i ],
-			"globalEval",
-			!refElements || dataPriv.get( refElements[ i ], "globalEval" )
-		);
-	}
-}
-
-
-var rhtml = /<|&#?\w+;/;
-
-function buildFragment( elems, context, scripts, selection, ignored ) {
-	var elem, tmp, tag, wrap, attached, j,
-		fragment = context.createDocumentFragment(),
-		nodes = [],
-		i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		elem = elems[ i ];
-
-		if ( elem || elem === 0 ) {
-
-			// Add nodes directly
-			if ( toType( elem ) === "object" ) {
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem );
-
-			// Convert non-html into a text node
-			} else if ( !rhtml.test( elem ) ) {
-				nodes.push( context.createTextNode( elem ) );
-
-			// Convert html into DOM nodes
-			} else {
-				tmp = tmp || fragment.appendChild( context.createElement( "div" ) );
-
-				// Deserialize a standard representation
-				tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase();
-				wrap = wrapMap[ tag ] || wrapMap._default;
-				tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ];
-
-				// Descend through wrappers to the right content
-				j = wrap[ 0 ];
-				while ( j-- ) {
-					tmp = tmp.lastChild;
-				}
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, tmp.childNodes );
-
-				// Remember the top-level container
-				tmp = fragment.firstChild;
-
-				// Ensure the created nodes are orphaned (#12392)
-				tmp.textContent = "";
-			}
-		}
-	}
-
-	// Remove wrapper from fragment
-	fragment.textContent = "";
-
-	i = 0;
-	while ( ( elem = nodes[ i++ ] ) ) {
-
-		// Skip elements already in the context collection (trac-4087)
-		if ( selection && jQuery.inArray( elem, selection ) > -1 ) {
-			if ( ignored ) {
-				ignored.push( elem );
-			}
-			continue;
-		}
-
-		attached = isAttached( elem );
-
-		// Append to fragment
-		tmp = getAll( fragment.appendChild( elem ), "script" );
-
-		// Preserve script evaluation history
-		if ( attached ) {
-			setGlobalEval( tmp );
-		}
-
-		// Capture executables
-		if ( scripts ) {
-			j = 0;
-			while ( ( elem = tmp[ j++ ] ) ) {
-				if ( rscriptType.test( elem.type || "" ) ) {
-					scripts.push( elem );
-				}
-			}
-		}
-	}
-
-	return fragment;
-}
-
-
-var rtypenamespace = /^([^.]*)(?:\.(.+)|)/;
-
-function returnTrue() {
-	return true;
-}
-
-function returnFalse() {
-	return false;
-}
-
-// Support: IE <=9 - 11+
-// focus() and blur() are asynchronous, except when they are no-op.
-// So expect focus to be synchronous when the element is already active,
-// and blur to be synchronous when the element is not already active.
-// (focus and blur are always synchronous in other supported browsers,
-// this just defines when we can count on it).
-function expectSync( elem, type ) {
-	return ( elem === safeActiveElement() ) === ( type === "focus" );
-}
-
-// Support: IE <=9 only
-// Accessing document.activeElement can throw unexpectedly
-// https://bugs.jquery.com/ticket/13393
-function safeActiveElement() {
-	try {
-		return document.activeElement;
-	} catch ( err ) { }
-}
-
-function on( elem, types, selector, data, fn, one ) {
-	var origFn, type;
-
-	// Types can be a map of types/handlers
-	if ( typeof types === "object" ) {
-
-		// ( types-Object, selector, data )
-		if ( typeof selector !== "string" ) {
-
-			// ( types-Object, data )
-			data = data || selector;
-			selector = undefined;
-		}
-		for ( type in types ) {
-			on( elem, type, selector, data, types[ type ], one );
-		}
-		return elem;
-	}
-
-	if ( data == null && fn == null ) {
-
-		// ( types, fn )
-		fn = selector;
-		data = selector = undefined;
-	} else if ( fn == null ) {
-		if ( typeof selector === "string" ) {
-
-			// ( types, selector, fn )
-			fn = data;
-			data = undefined;
-		} else {
-
-			// ( types, data, fn )
-			fn = data;
-			data = selector;
-			selector = undefined;
-		}
-	}
-	if ( fn === false ) {
-		fn = returnFalse;
-	} else if ( !fn ) {
-		return elem;
-	}
-
-	if ( one === 1 ) {
-		origFn = fn;
-		fn = function( event ) {
-
-			// Can use an empty set, since event contains the info
-			jQuery().off( event );
-			return origFn.apply( this, arguments );
-		};
-
-		// Use same guid so caller can remove using origFn
-		fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ );
-	}
-	return elem.each( function() {
-		jQuery.event.add( this, types, fn, data, selector );
-	} );
-}
-
-/*
- * Helper functions for managing events -- not part of the public interface.
- * Props to Dean Edwards' addEvent library for many of the ideas.
- */
-jQuery.event = {
-
-	global: {},
-
-	add: function( elem, types, handler, data, selector ) {
-
-		var handleObjIn, eventHandle, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.get( elem );
-
-		// Only attach events to objects that accept data
-		if ( !acceptData( elem ) ) {
-			return;
-		}
-
-		// Caller can pass in an object of custom data in lieu of the handler
-		if ( handler.handler ) {
-			handleObjIn = handler;
-			handler = handleObjIn.handler;
-			selector = handleObjIn.selector;
-		}
-
-		// Ensure that invalid selectors throw exceptions at attach time
-		// Evaluate against documentElement in case elem is a non-element node (e.g., document)
-		if ( selector ) {
-			jQuery.find.matchesSelector( documentElement, selector );
-		}
-
-		// Make sure that the handler has a unique ID, used to find/remove it later
-		if ( !handler.guid ) {
-			handler.guid = jQuery.guid++;
-		}
-
-		// Init the element's event structure and main handler, if this is the first
-		if ( !( events = elemData.events ) ) {
-			events = elemData.events = Object.create( null );
-		}
-		if ( !( eventHandle = elemData.handle ) ) {
-			eventHandle = elemData.handle = function( e ) {
-
-				// Discard the second event of a jQuery.event.trigger() and
-				// when an event is called after a page has unloaded
-				return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ?
-					jQuery.event.dispatch.apply( elem, arguments ) : undefined;
-			};
-		}
-
-		// Handle multiple events separated by a space
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// There *must* be a type, no attaching namespace-only handlers
-			if ( !type ) {
-				continue;
-			}
-
-			// If event changes its type, use the special event handlers for the changed type
-			special = jQuery.event.special[ type ] || {};
-
-			// If selector defined, determine special event api type, otherwise given type
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-
-			// Update special based on newly reset type
-			special = jQuery.event.special[ type ] || {};
-
-			// handleObj is passed to all event handlers
-			handleObj = jQuery.extend( {
-				type: type,
-				origType: origType,
-				data: data,
-				handler: handler,
-				guid: handler.guid,
-				selector: selector,
-				needsContext: selector && jQuery.expr.match.needsContext.test( selector ),
-				namespace: namespaces.join( "." )
-			}, handleObjIn );
-
-			// Init the event handler queue if we're the first
-			if ( !( handlers = events[ type ] ) ) {
-				handlers = events[ type ] = [];
-				handlers.delegateCount = 0;
-
-				// Only use addEventListener if the special events handler returns false
-				if ( !special.setup ||
-					special.setup.call( elem, data, namespaces, eventHandle ) === false ) {
-
-					if ( elem.addEventListener ) {
-						elem.addEventListener( type, eventHandle );
-					}
-				}
-			}
-
-			if ( special.add ) {
-				special.add.call( elem, handleObj );
-
-				if ( !handleObj.handler.guid ) {
-					handleObj.handler.guid = handler.guid;
-				}
-			}
-
-			// Add to the element's handler list, delegates in front
-			if ( selector ) {
-				handlers.splice( handlers.delegateCount++, 0, handleObj );
-			} else {
-				handlers.push( handleObj );
-			}
-
-			// Keep track of which events have ever been used, for event optimization
-			jQuery.event.global[ type ] = true;
-		}
-
-	},
-
-	// Detach an event or set of events from an element
-	remove: function( elem, types, handler, selector, mappedTypes ) {
-
-		var j, origCount, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.hasData( elem ) && dataPriv.get( elem );
-
-		if ( !elemData || !( events = elemData.events ) ) {
-			return;
-		}
-
-		// Once for each type.namespace in types; type may be omitted
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// Unbind all events (on this namespace, if provided) for the element
-			if ( !type ) {
-				for ( type in events ) {
-					jQuery.event.remove( elem, type + types[ t ], handler, selector, true );
-				}
-				continue;
-			}
-
-			special = jQuery.event.special[ type ] || {};
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-			handlers = events[ type ] || [];
-			tmp = tmp[ 2 ] &&
-				new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" );
-
-			// Remove matching events
-			origCount = j = handlers.length;
-			while ( j-- ) {
-				handleObj = handlers[ j ];
-
-				if ( ( mappedTypes || origType === handleObj.origType ) &&
-					( !handler || handler.guid === handleObj.guid ) &&
-					( !tmp || tmp.test( handleObj.namespace ) ) &&
-					( !selector || selector === handleObj.selector ||
-						selector === "**" && handleObj.selector ) ) {
-					handlers.splice( j, 1 );
-
-					if ( handleObj.selector ) {
-						handlers.delegateCount--;
-					}
-					if ( special.remove ) {
-						special.remove.call( elem, handleObj );
-					}
-				}
-			}
-
-			// Remove generic event handler if we removed something and no more handlers exist
-			// (avoids potential for endless recursion during removal of special event handlers)
-			if ( origCount && !handlers.length ) {
-				if ( !special.teardown ||
-					special.teardown.call( elem, namespaces, elemData.handle ) === false ) {
-
-					jQuery.removeEvent( elem, type, elemData.handle );
-				}
-
-				delete events[ type ];
-			}
-		}
-
-		// Remove data and the expando if it's no longer used
-		if ( jQuery.isEmptyObject( events ) ) {
-			dataPriv.remove( elem, "handle events" );
-		}
-	},
-
-	dispatch: function( nativeEvent ) {
-
-		var i, j, ret, matched, handleObj, handlerQueue,
-			args = new Array( arguments.length ),
-
-			// Make a writable jQuery.Event from the native event object
-			event = jQuery.event.fix( nativeEvent ),
-
-			handlers = (
-				dataPriv.get( this, "events" ) || Object.create( null )
-			)[ event.type ] || [],
-			special = jQuery.event.special[ event.type ] || {};
-
-		// Use the fix-ed jQuery.Event rather than the (read-only) native event
-		args[ 0 ] = event;
-
-		for ( i = 1; i < arguments.length; i++ ) {
-			args[ i ] = arguments[ i ];
-		}
-
-		event.delegateTarget = this;
-
-		// Call the preDispatch hook for the mapped type, and let it bail if desired
-		if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) {
-			return;
-		}
-
-		// Determine handlers
-		handlerQueue = jQuery.event.handlers.call( this, event, handlers );
-
-		// Run delegates first; they may want to stop propagation beneath us
-		i = 0;
-		while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) {
-			event.currentTarget = matched.elem;
-
-			j = 0;
-			while ( ( handleObj = matched.handlers[ j++ ] ) &&
-				!event.isImmediatePropagationStopped() ) {
-
-				// If the event is namespaced, then each handler is only invoked if it is
-				// specially universal or its namespaces are a superset of the event's.
-				if ( !event.rnamespace || handleObj.namespace === false ||
-					event.rnamespace.test( handleObj.namespace ) ) {
-
-					event.handleObj = handleObj;
-					event.data = handleObj.data;
-
-					ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle ||
-						handleObj.handler ).apply( matched.elem, args );
-
-					if ( ret !== undefined ) {
-						if ( ( event.result = ret ) === false ) {
-							event.preventDefault();
-							event.stopPropagation();
-						}
-					}
-				}
-			}
-		}
-
-		// Call the postDispatch hook for the mapped type
-		if ( special.postDispatch ) {
-			special.postDispatch.call( this, event );
-		}
-
-		return event.result;
-	},
-
-	handlers: function( event, handlers ) {
-		var i, handleObj, sel, matchedHandlers, matchedSelectors,
-			handlerQueue = [],
-			delegateCount = handlers.delegateCount,
-			cur = event.target;
-
-		// Find delegate handlers
-		if ( delegateCount &&
-
-			// Support: IE <=9
-			// Black-hole SVG <use> instance trees (trac-13180)
-			cur.nodeType &&
-
-			// Support: Firefox <=42
-			// Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861)
-			// https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click
-			// Support: IE 11 only
-			// ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343)
-			!( event.type === "click" && event.button >= 1 ) ) {
-
-			for ( ; cur !== this; cur = cur.parentNode || this ) {
-
-				// Don't check non-elements (#13208)
-				// Don't process clicks on disabled elements (#6911, #8165, #11382, #11764)
-				if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) {
-					matchedHandlers = [];
-					matchedSelectors = {};
-					for ( i = 0; i < delegateCount; i++ ) {
-						handleObj = handlers[ i ];
-
-						// Don't conflict with Object.prototype properties (#13203)
-						sel = handleObj.selector + " ";
-
-						if ( matchedSelectors[ sel ] === undefined ) {
-							matchedSelectors[ sel ] = handleObj.needsContext ?
-								jQuery( sel, this ).index( cur ) > -1 :
-								jQuery.find( sel, this, null, [ cur ] ).length;
-						}
-						if ( matchedSelectors[ sel ] ) {
-							matchedHandlers.push( handleObj );
-						}
-					}
-					if ( matchedHandlers.length ) {
-						handlerQueue.push( { elem: cur, handlers: matchedHandlers } );
-					}
-				}
-			}
-		}
-
-		// Add the remaining (directly-bound) handlers
-		cur = this;
-		if ( delegateCount < handlers.length ) {
-			handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } );
-		}
-
-		return handlerQueue;
-	},
-
-	addProp: function( name, hook ) {
-		Object.defineProperty( jQuery.Event.prototype, name, {
-			enumerable: true,
-			configurable: true,
-
-			get: isFunction( hook ) ?
-				function() {
-					if ( this.originalEvent ) {
-						return hook( this.originalEvent );
-					}
-				} :
-				function() {
-					if ( this.originalEvent ) {
-						return this.originalEvent[ name ];
-					}
-				},
-
-			set: function( value ) {
-				Object.defineProperty( this, name, {
-					enumerable: true,
-					configurable: true,
-					writable: true,
-					value: value
-				} );
-			}
-		} );
-	},
-
-	fix: function( originalEvent ) {
-		return originalEvent[ jQuery.expando ] ?
-			originalEvent :
-			new jQuery.Event( originalEvent );
-	},
-
-	special: {
-		load: {
-
-			// Prevent triggered image.load events from bubbling to window.load
-			noBubble: true
-		},
-		click: {
-
-			// Utilize native event to ensure correct state for checkable inputs
-			setup: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Claim the first handler
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					// dataPriv.set( el, "click", ... )
-					leverageNative( el, "click", returnTrue );
-				}
-
-				// Return false to allow normal processing in the caller
-				return false;
-			},
-			trigger: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Force setup before triggering a click
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					leverageNative( el, "click" );
-				}
-
-				// Return non-false to allow normal event-path propagation
-				return true;
-			},
-
-			// For cross-browser consistency, suppress native .click() on links
-			// Also prevent it if we're currently inside a leveraged native-event stack
-			_default: function( event ) {
-				var target = event.target;
-				return rcheckableType.test( target.type ) &&
-					target.click && nodeName( target, "input" ) &&
-					dataPriv.get( target, "click" ) ||
-					nodeName( target, "a" );
-			}
-		},
-
-		beforeunload: {
-			postDispatch: function( event ) {
-
-				// Support: Firefox 20+
-				// Firefox doesn't alert if the returnValue field is not set.
-				if ( event.result !== undefined && event.originalEvent ) {
-					event.originalEvent.returnValue = event.result;
-				}
-			}
-		}
-	}
-};
-
-// Ensure the presence of an event listener that handles manually-triggered
-// synthetic events by interrupting progress until reinvoked in response to
-// *native* events that it fires directly, ensuring that state changes have
-// already occurred before other listeners are invoked.
-function leverageNative( el, type, expectSync ) {
-
-	// Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add
-	if ( !expectSync ) {
-		if ( dataPriv.get( el, type ) === undefined ) {
-			jQuery.event.add( el, type, returnTrue );
-		}
-		return;
-	}
-
-	// Register the controller as a special universal handler for all event namespaces
-	dataPriv.set( el, type, false );
-	jQuery.event.add( el, type, {
-		namespace: false,
-		handler: function( event ) {
-			var notAsync, result,
-				saved = dataPriv.get( this, type );
-
-			if ( ( event.isTrigger & 1 ) && this[ type ] ) {
-
-				// Interrupt processing of the outer synthetic .trigger()ed event
-				// Saved data should be false in such cases, but might be a leftover capture object
-				// from an async native handler (gh-4350)
-				if ( !saved.length ) {
-
-					// Store arguments for use when handling the inner native event
-					// There will always be at least one argument (an event object), so this array
-					// will not be confused with a leftover capture object.
-					saved = slice.call( arguments );
-					dataPriv.set( this, type, saved );
-
-					// Trigger the native event and capture its result
-					// Support: IE <=9 - 11+
-					// focus() and blur() are asynchronous
-					notAsync = expectSync( this, type );
-					this[ type ]();
-					result = dataPriv.get( this, type );
-					if ( saved !== result || notAsync ) {
-						dataPriv.set( this, type, false );
-					} else {
-						result = {};
-					}
-					if ( saved !== result ) {
-
-						// Cancel the outer synthetic event
-						event.stopImmediatePropagation();
-						event.preventDefault();
-
-						// Support: Chrome 86+
-						// In Chrome, if an element having a focusout handler is blurred by
-						// clicking outside of it, it invokes the handler synchronously. If
-						// that handler calls `.remove()` on the element, the data is cleared,
-						// leaving `result` undefined. We need to guard against this.
-						return result && result.value;
-					}
-
-				// If this is an inner synthetic event for an event with a bubbling surrogate
-				// (focus or blur), assume that the surrogate already propagated from triggering the
-				// native event and prevent that from happening again here.
-				// This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the
-				// bubbling surrogate propagates *after* the non-bubbling base), but that seems
-				// less bad than duplication.
-				} else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) {
-					event.stopPropagation();
-				}
-
-			// If this is a native event triggered above, everything is now in order
-			// Fire an inner synthetic event with the original arguments
-			} else if ( saved.length ) {
-
-				// ...and capture the result
-				dataPriv.set( this, type, {
-					value: jQuery.event.trigger(
-
-						// Support: IE <=9 - 11+
-						// Extend with the prototype to reset the above stopImmediatePropagation()
-						jQuery.extend( saved[ 0 ], jQuery.Event.prototype ),
-						saved.slice( 1 ),
-						this
-					)
-				} );
-
-				// Abort handling of the native event
-				event.stopImmediatePropagation();
-			}
-		}
-	} );
-}
-
-jQuery.removeEvent = function( elem, type, handle ) {
-
-	// This "if" is needed for plain objects
-	if ( elem.removeEventListener ) {
-		elem.removeEventListener( type, handle );
-	}
-};
-
-jQuery.Event = function( src, props ) {
-
-	// Allow instantiation without the 'new' keyword
-	if ( !( this instanceof jQuery.Event ) ) {
-		return new jQuery.Event( src, props );
-	}
-
-	// Event object
-	if ( src && src.type ) {
-		this.originalEvent = src;
-		this.type = src.type;
-
-		// Events bubbling up the document may have been marked as prevented
-		// by a handler lower down the tree; reflect the correct value.
-		this.isDefaultPrevented = src.defaultPrevented ||
-				src.defaultPrevented === undefined &&
-
-				// Support: Android <=2.3 only
-				src.returnValue === false ?
-			returnTrue :
-			returnFalse;
-
-		// Create target properties
-		// Support: Safari <=6 - 7 only
-		// Target should not be a text node (#504, #13143)
-		this.target = ( src.target && src.target.nodeType === 3 ) ?
-			src.target.parentNode :
-			src.target;
-
-		this.currentTarget = src.currentTarget;
-		this.relatedTarget = src.relatedTarget;
-
-	// Event type
-	} else {
-		this.type = src;
-	}
-
-	// Put explicitly provided properties onto the event object
-	if ( props ) {
-		jQuery.extend( this, props );
-	}
-
-	// Create a timestamp if incoming event doesn't have one
-	this.timeStamp = src && src.timeStamp || Date.now();
-
-	// Mark it as fixed
-	this[ jQuery.expando ] = true;
-};
-
-// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding
-// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html
-jQuery.Event.prototype = {
-	constructor: jQuery.Event,
-	isDefaultPrevented: returnFalse,
-	isPropagationStopped: returnFalse,
-	isImmediatePropagationStopped: returnFalse,
-	isSimulated: false,
-
-	preventDefault: function() {
-		var e = this.originalEvent;
-
-		this.isDefaultPrevented = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.preventDefault();
-		}
-	},
-	stopPropagation: function() {
-		var e = this.originalEvent;
-
-		this.isPropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopPropagation();
-		}
-	},
-	stopImmediatePropagation: function() {
-		var e = this.originalEvent;
-
-		this.isImmediatePropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopImmediatePropagation();
-		}
-
-		this.stopPropagation();
-	}
-};
-
-// Includes all common event props including KeyEvent and MouseEvent specific props
-jQuery.each( {
-	altKey: true,
-	bubbles: true,
-	cancelable: true,
-	changedTouches: true,
-	ctrlKey: true,
-	detail: true,
-	eventPhase: true,
-	metaKey: true,
-	pageX: true,
-	pageY: true,
-	shiftKey: true,
-	view: true,
-	"char": true,
-	code: true,
-	charCode: true,
-	key: true,
-	keyCode: true,
-	button: true,
-	buttons: true,
-	clientX: true,
-	clientY: true,
-	offsetX: true,
-	offsetY: true,
-	pointerId: true,
-	pointerType: true,
-	screenX: true,
-	screenY: true,
-	targetTouches: true,
-	toElement: true,
-	touches: true,
-	which: true
-}, jQuery.event.addProp );
-
-jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) {
-	jQuery.event.special[ type ] = {
-
-		// Utilize native event if possible so blur/focus sequence is correct
-		setup: function() {
-
-			// Claim the first handler
-			// dataPriv.set( this, "focus", ... )
-			// dataPriv.set( this, "blur", ... )
-			leverageNative( this, type, expectSync );
-
-			// Return false to allow normal processing in the caller
-			return false;
-		},
-		trigger: function() {
-
-			// Force setup before trigger
-			leverageNative( this, type );
-
-			// Return non-false to allow normal event-path propagation
-			return true;
-		},
-
-		// Suppress native focus or blur as it's already being fired
-		// in leverageNative.
-		_default: function() {
-			return true;
-		},
-
-		delegateType: delegateType
-	};
-} );
-
-// Create mouseenter/leave events using mouseover/out and event-time checks
-// so that event delegation works in jQuery.
-// Do the same for pointerenter/pointerleave and pointerover/pointerout
-//
-// Support: Safari 7 only
-// Safari sends mouseenter too often; see:
-// https://bugs.chromium.org/p/chromium/issues/detail?id=470258
-// for the description of the bug (it existed in older Chrome versions as well).
-jQuery.each( {
-	mouseenter: "mouseover",
-	mouseleave: "mouseout",
-	pointerenter: "pointerover",
-	pointerleave: "pointerout"
-}, function( orig, fix ) {
-	jQuery.event.special[ orig ] = {
-		delegateType: fix,
-		bindType: fix,
-
-		handle: function( event ) {
-			var ret,
-				target = this,
-				related = event.relatedTarget,
-				handleObj = event.handleObj;
-
-			// For mouseenter/leave call the handler if related is outside the target.
-			// NB: No relatedTarget if the mouse left/entered the browser window
-			if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) {
-				event.type = handleObj.origType;
-				ret = handleObj.handler.apply( this, arguments );
-				event.type = fix;
-			}
-			return ret;
-		}
-	};
-} );
-
-jQuery.fn.extend( {
-
-	on: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn );
-	},
-	one: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn, 1 );
-	},
-	off: function( types, selector, fn ) {
-		var handleObj, type;
-		if ( types && types.preventDefault && types.handleObj ) {
-
-			// ( event )  dispatched jQuery.Event
-			handleObj = types.handleObj;
-			jQuery( types.delegateTarget ).off(
-				handleObj.namespace ?
-					handleObj.origType + "." + handleObj.namespace :
-					handleObj.origType,
-				handleObj.selector,
-				handleObj.handler
-			);
-			return this;
-		}
-		if ( typeof types === "object" ) {
-
-			// ( types-object [, selector] )
-			for ( type in types ) {
-				this.off( type, selector, types[ type ] );
-			}
-			return this;
-		}
-		if ( selector === false || typeof selector === "function" ) {
-
-			// ( types [, fn] )
-			fn = selector;
-			selector = undefined;
-		}
-		if ( fn === false ) {
-			fn = returnFalse;
-		}
-		return this.each( function() {
-			jQuery.event.remove( this, types, fn, selector );
-		} );
-	}
-} );
-
-
-var
-
-	// Support: IE <=10 - 11, Edge 12 - 13 only
-	// In IE/Edge using regex groups here causes severe slowdowns.
-	// See https://connect.microsoft.com/IE/feedback/details/1736512/
-	rnoInnerhtml = /<script|<style|<link/i,
-
-	// checked="checked" or checked
-	rchecked = /checked\s*(?:[^=]|=\s*.checked.)/i,
-	rcleanScript = /^\s*<!(?:\[CDATA\[|--)|(?:\]\]|--)>\s*$/g;
-
-// Prefer a tbody over its parent table for containing new rows
-function manipulationTarget( elem, content ) {
-	if ( nodeName( elem, "table" ) &&
-		nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) {
-
-		return jQuery( elem ).children( "tbody" )[ 0 ] || elem;
-	}
-
-	return elem;
-}
-
-// Replace/restore the type attribute of script elements for safe DOM manipulation
-function disableScript( elem ) {
-	elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type;
-	return elem;
-}
-function restoreScript( elem ) {
-	if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) {
-		elem.type = elem.type.slice( 5 );
-	} else {
-		elem.removeAttribute( "type" );
-	}
-
-	return elem;
-}
-
-function cloneCopyEvent( src, dest ) {
-	var i, l, type, pdataOld, udataOld, udataCur, events;
-
-	if ( dest.nodeType !== 1 ) {
-		return;
-	}
-
-	// 1. Copy private data: events, handlers, etc.
-	if ( dataPriv.hasData( src ) ) {
-		pdataOld = dataPriv.get( src );
-		events = pdataOld.events;
-
-		if ( events ) {
-			dataPriv.remove( dest, "handle events" );
-
-			for ( type in events ) {
-				for ( i = 0, l = events[ type ].length; i < l; i++ ) {
-					jQuery.event.add( dest, type, events[ type ][ i ] );
-				}
-			}
-		}
-	}
-
-	// 2. Copy user data
-	if ( dataUser.hasData( src ) ) {
-		udataOld = dataUser.access( src );
-		udataCur = jQuery.extend( {}, udataOld );
-
-		dataUser.set( dest, udataCur );
-	}
-}
-
-// Fix IE bugs, see support tests
-function fixInput( src, dest ) {
-	var nodeName = dest.nodeName.toLowerCase();
-
-	// Fails to persist the checked state of a cloned checkbox or radio button.
-	if ( nodeName === "input" && rcheckableType.test( src.type ) ) {
-		dest.checked = src.checked;
-
-	// Fails to return the selected option to the default selected state when cloning options
-	} else if ( nodeName === "input" || nodeName === "textarea" ) {
-		dest.defaultValue = src.defaultValue;
-	}
-}
-
-function domManip( collection, args, callback, ignored ) {
-
-	// Flatten any nested arrays
-	args = flat( args );
-
-	var fragment, first, scripts, hasScripts, node, doc,
-		i = 0,
-		l = collection.length,
-		iNoClone = l - 1,
-		value = args[ 0 ],
-		valueIsFunction = isFunction( value );
-
-	// We can't cloneNode fragments that contain checked, in WebKit
-	if ( valueIsFunction ||
-			( l > 1 && typeof value === "string" &&
-				!support.checkClone && rchecked.test( value ) ) ) {
-		return collection.each( function( index ) {
-			var self = collection.eq( index );
-			if ( valueIsFunction ) {
-				args[ 0 ] = value.call( this, index, self.html() );
-			}
-			domManip( self, args, callback, ignored );
-		} );
-	}
-
-	if ( l ) {
-		fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored );
-		first = fragment.firstChild;
-
-		if ( fragment.childNodes.length === 1 ) {
-			fragment = first;
-		}
-
-		// Require either new content or an interest in ignored elements to invoke the callback
-		if ( first || ignored ) {
-			scripts = jQuery.map( getAll( fragment, "script" ), disableScript );
-			hasScripts = scripts.length;
-
-			// Use the original fragment for the last item
-			// instead of the first because it can end up
-			// being emptied incorrectly in certain situations (#8070).
-			for ( ; i < l; i++ ) {
-				node = fragment;
-
-				if ( i !== iNoClone ) {
-					node = jQuery.clone( node, true, true );
-
-					// Keep references to cloned scripts for later restoration
-					if ( hasScripts ) {
-
-						// Support: Android <=4.0 only, PhantomJS 1 only
-						// push.apply(_, arraylike) throws on ancient WebKit
-						jQuery.merge( scripts, getAll( node, "script" ) );
-					}
-				}
-
-				callback.call( collection[ i ], node, i );
-			}
-
-			if ( hasScripts ) {
-				doc = scripts[ scripts.length - 1 ].ownerDocument;
-
-				// Reenable scripts
-				jQuery.map( scripts, restoreScript );
-
-				// Evaluate executable scripts on first document insertion
-				for ( i = 0; i < hasScripts; i++ ) {
-					node = scripts[ i ];
-					if ( rscriptType.test( node.type || "" ) &&
-						!dataPriv.access( node, "globalEval" ) &&
-						jQuery.contains( doc, node ) ) {
-
-						if ( node.src && ( node.type || "" ).toLowerCase()  !== "module" ) {
-
-							// Optional AJAX dependency, but won't run scripts if not present
-							if ( jQuery._evalUrl && !node.noModule ) {
-								jQuery._evalUrl( node.src, {
-									nonce: node.nonce || node.getAttribute( "nonce" )
-								}, doc );
-							}
-						} else {
-							DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc );
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return collection;
-}
-
-function remove( elem, selector, keepData ) {
-	var node,
-		nodes = selector ? jQuery.filter( selector, elem ) : elem,
-		i = 0;
-
-	for ( ; ( node = nodes[ i ] ) != null; i++ ) {
-		if ( !keepData && node.nodeType === 1 ) {
-			jQuery.cleanData( getAll( node ) );
-		}
-
-		if ( node.parentNode ) {
-			if ( keepData && isAttached( node ) ) {
-				setGlobalEval( getAll( node, "script" ) );
-			}
-			node.parentNode.removeChild( node );
-		}
-	}
-
-	return elem;
-}
-
-jQuery.extend( {
-	htmlPrefilter: function( html ) {
-		return html;
-	},
-
-	clone: function( elem, dataAndEvents, deepDataAndEvents ) {
-		var i, l, srcElements, destElements,
-			clone = elem.cloneNode( true ),
-			inPage = isAttached( elem );
-
-		// Fix IE cloning issues
-		if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) &&
-				!jQuery.isXMLDoc( elem ) ) {
-
-			// We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2
-			destElements = getAll( clone );
-			srcElements = getAll( elem );
-
-			for ( i = 0, l = srcElements.length; i < l; i++ ) {
-				fixInput( srcElements[ i ], destElements[ i ] );
-			}
-		}
-
-		// Copy the events from the original to the clone
-		if ( dataAndEvents ) {
-			if ( deepDataAndEvents ) {
-				srcElements = srcElements || getAll( elem );
-				destElements = destElements || getAll( clone );
-
-				for ( i = 0, l = srcElements.length; i < l; i++ ) {
-					cloneCopyEvent( srcElements[ i ], destElements[ i ] );
-				}
-			} else {
-				cloneCopyEvent( elem, clone );
-			}
-		}
-
-		// Preserve script evaluation history
-		destElements = getAll( clone, "script" );
-		if ( destElements.length > 0 ) {
-			setGlobalEval( destElements, !inPage && getAll( elem, "script" ) );
-		}
-
-		// Return the cloned set
-		return clone;
-	},
-
-	cleanData: function( elems ) {
-		var data, elem, type,
-			special = jQuery.event.special,
-			i = 0;
-
-		for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) {
-			if ( acceptData( elem ) ) {
-				if ( ( data = elem[ dataPriv.expando ] ) ) {
-					if ( data.events ) {
-						for ( type in data.events ) {
-							if ( special[ type ] ) {
-								jQuery.event.remove( elem, type );
-
-							// This is a shortcut to avoid jQuery.event.remove's overhead
-							} else {
-								jQuery.removeEvent( elem, type, data.handle );
-							}
-						}
-					}
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataPriv.expando ] = undefined;
-				}
-				if ( elem[ dataUser.expando ] ) {
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataUser.expando ] = undefined;
-				}
-			}
-		}
-	}
-} );
-
-jQuery.fn.extend( {
-	detach: function( selector ) {
-		return remove( this, selector, true );
-	},
-
-	remove: function( selector ) {
-		return remove( this, selector );
-	},
-
-	text: function( value ) {
-		return access( this, function( value ) {
-			return value === undefined ?
-				jQuery.text( this ) :
-				this.empty().each( function() {
-					if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-						this.textContent = value;
-					}
-				} );
-		}, null, value, arguments.length );
-	},
-
-	append: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.appendChild( elem );
-			}
-		} );
-	},
-
-	prepend: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.insertBefore( elem, target.firstChild );
-			}
-		} );
-	},
-
-	before: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this );
-			}
-		} );
-	},
-
-	after: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this.nextSibling );
-			}
-		} );
-	},
-
-	empty: function() {
-		var elem,
-			i = 0;
-
-		for ( ; ( elem = this[ i ] ) != null; i++ ) {
-			if ( elem.nodeType === 1 ) {
-
-				// Prevent memory leaks
-				jQuery.cleanData( getAll( elem, false ) );
-
-				// Remove any remaining nodes
-				elem.textContent = "";
-			}
-		}
-
-		return this;
-	},
-
-	clone: function( dataAndEvents, deepDataAndEvents ) {
-		dataAndEvents = dataAndEvents == null ? false : dataAndEvents;
-		deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents;
-
-		return this.map( function() {
-			return jQuery.clone( this, dataAndEvents, deepDataAndEvents );
-		} );
-	},
-
-	html: function( value ) {
-		return access( this, function( value ) {
-			var elem = this[ 0 ] || {},
-				i = 0,
-				l = this.length;
-
-			if ( value === undefined && elem.nodeType === 1 ) {
-				return elem.innerHTML;
-			}
-
-			// See if we can take a shortcut and just use innerHTML
-			if ( typeof value === "string" && !rnoInnerhtml.test( value ) &&
-				!wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) {
-
-				value = jQuery.htmlPrefilter( value );
-
-				try {
-					for ( ; i < l; i++ ) {
-						elem = this[ i ] || {};
-
-						// Remove element nodes and prevent memory leaks
-						if ( elem.nodeType === 1 ) {
-							jQuery.cleanData( getAll( elem, false ) );
-							elem.innerHTML = value;
-						}
-					}
-
-					elem = 0;
-
-				// If using innerHTML throws an exception, use the fallback method
-				} catch ( e ) {}
-			}
-
-			if ( elem ) {
-				this.empty().append( value );
-			}
-		}, null, value, arguments.length );
-	},
-
-	replaceWith: function() {
-		var ignored = [];
-
-		// Make the changes, replacing each non-ignored context element with the new content
-		return domManip( this, arguments, function( elem ) {
-			var parent = this.parentNode;
-
-			if ( jQuery.inArray( this, ignored ) < 0 ) {
-				jQuery.cleanData( getAll( this ) );
-				if ( parent ) {
-					parent.replaceChild( elem, this );
-				}
-			}
-
-		// Force callback invocation
-		}, ignored );
-	}
-} );
-
-jQuery.each( {
-	appendTo: "append",
-	prependTo: "prepend",
-	insertBefore: "before",
-	insertAfter: "after",
-	replaceAll: "replaceWith"
-}, function( name, original ) {
-	jQuery.fn[ name ] = function( selector ) {
-		var elems,
-			ret = [],
-			insert = jQuery( selector ),
-			last = insert.length - 1,
-			i = 0;
-
-		for ( ; i <= last; i++ ) {
-			elems = i === last ? this : this.clone( true );
-			jQuery( insert[ i ] )[ original ]( elems );
-
-			// Support: Android <=4.0 only, PhantomJS 1 only
-			// .get() because push.apply(_, arraylike) throws on ancient WebKit
-			push.apply( ret, elems.get() );
-		}
-
-		return this.pushStack( ret );
-	};
-} );
-var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" );
-
-var getStyles = function( elem ) {
-
-		// Support: IE <=11 only, Firefox <=30 (#15098, #14150)
-		// IE throws on elements created in popups
-		// FF meanwhile throws on frame elements through "defaultView.getComputedStyle"
-		var view = elem.ownerDocument.defaultView;
-
-		if ( !view || !view.opener ) {
-			view = window;
-		}
-
-		return view.getComputedStyle( elem );
-	};
-
-var swap = function( elem, options, callback ) {
-	var ret, name,
-		old = {};
-
-	// Remember the old values, and insert the new ones
-	for ( name in options ) {
-		old[ name ] = elem.style[ name ];
-		elem.style[ name ] = options[ name ];
-	}
-
-	ret = callback.call( elem );
-
-	// Revert the old values
-	for ( name in options ) {
-		elem.style[ name ] = old[ name ];
-	}
-
-	return ret;
-};
-
-
-var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" );
-
-
-
-( function() {
-
-	// Executing both pixelPosition & boxSizingReliable tests require only one layout
-	// so they're executed at the same time to save the second computation.
-	function computeStyleTests() {
-
-		// This is a singleton, we need to execute it only once
-		if ( !div ) {
-			return;
-		}
-
-		container.style.cssText = "position:absolute;left:-11111px;width:60px;" +
-			"margin-top:1px;padding:0;border:0";
-		div.style.cssText =
-			"position:relative;display:block;box-sizing:border-box;overflow:scroll;" +
-			"margin:auto;border:1px;padding:1px;" +
-			"width:60%;top:1%";
-		documentElement.appendChild( container ).appendChild( div );
-
-		var divStyle = window.getComputedStyle( div );
-		pixelPositionVal = divStyle.top !== "1%";
-
-		// Support: Android 4.0 - 4.3 only, Firefox <=3 - 44
-		reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12;
-
-		// Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3
-		// Some styles come back with percentage values, even though they shouldn't
-		div.style.right = "60%";
-		pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36;
-
-		// Support: IE 9 - 11 only
-		// Detect misreporting of content dimensions for box-sizing:border-box elements
-		boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36;
-
-		// Support: IE 9 only
-		// Detect overflow:scroll screwiness (gh-3699)
-		// Support: Chrome <=64
-		// Don't get tricked when zoom affects offsetWidth (gh-4029)
-		div.style.position = "absolute";
-		scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12;
-
-		documentElement.removeChild( container );
-
-		// Nullify the div so it wouldn't be stored in the memory and
-		// it will also be a sign that checks already performed
-		div = null;
-	}
-
-	function roundPixelMeasures( measure ) {
-		return Math.round( parseFloat( measure ) );
-	}
-
-	var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal,
-		reliableTrDimensionsVal, reliableMarginLeftVal,
-		container = document.createElement( "div" ),
-		div = document.createElement( "div" );
-
-	// Finish early in limited (non-browser) environments
-	if ( !div.style ) {
-		return;
-	}
-
-	// Support: IE <=9 - 11 only
-	// Style of cloned element affects source element cloned (#8908)
-	div.style.backgroundClip = "content-box";
-	div.cloneNode( true ).style.backgroundClip = "";
-	support.clearCloneStyle = div.style.backgroundClip === "content-box";
-
-	jQuery.extend( support, {
-		boxSizingReliable: function() {
-			computeStyleTests();
-			return boxSizingReliableVal;
-		},
-		pixelBoxStyles: function() {
-			computeStyleTests();
-			return pixelBoxStylesVal;
-		},
-		pixelPosition: function() {
-			computeStyleTests();
-			return pixelPositionVal;
-		},
-		reliableMarginLeft: function() {
-			computeStyleTests();
-			return reliableMarginLeftVal;
-		},
-		scrollboxSize: function() {
-			computeStyleTests();
-			return scrollboxSizeVal;
-		},
-
-		// Support: IE 9 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Behavior in IE 9 is more subtle than in newer versions & it passes
-		// some versions of this test; make sure not to make it pass there!
-		//
-		// Support: Firefox 70+
-		// Only Firefox includes border widths
-		// in computed dimensions. (gh-4529)
-		reliableTrDimensions: function() {
-			var table, tr, trChild, trStyle;
-			if ( reliableTrDimensionsVal == null ) {
-				table = document.createElement( "table" );
-				tr = document.createElement( "tr" );
-				trChild = document.createElement( "div" );
-
-				table.style.cssText = "position:absolute;left:-11111px;border-collapse:separate";
-				tr.style.cssText = "border:1px solid";
-
-				// Support: Chrome 86+
-				// Height set through cssText does not get applied.
-				// Computed height then comes back as 0.
-				tr.style.height = "1px";
-				trChild.style.height = "9px";
-
-				// Support: Android 8 Chrome 86+
-				// In our bodyBackground.html iframe,
-				// display for all div elements is set to "inline",
-				// which causes a problem only in Android 8 Chrome 86.
-				// Ensuring the div is display: block
-				// gets around this issue.
-				trChild.style.display = "block";
-
-				documentElement
-					.appendChild( table )
-					.appendChild( tr )
-					.appendChild( trChild );
-
-				trStyle = window.getComputedStyle( tr );
-				reliableTrDimensionsVal = ( parseInt( trStyle.height, 10 ) +
-					parseInt( trStyle.borderTopWidth, 10 ) +
-					parseInt( trStyle.borderBottomWidth, 10 ) ) === tr.offsetHeight;
-
-				documentElement.removeChild( table );
-			}
-			return reliableTrDimensionsVal;
-		}
-	} );
-} )();
-
-
-function curCSS( elem, name, computed ) {
-	var width, minWidth, maxWidth, ret,
-
-		// Support: Firefox 51+
-		// Retrieving style before computed somehow
-		// fixes an issue with getting wrong values
-		// on detached elements
-		style = elem.style;
-
-	computed = computed || getStyles( elem );
-
-	// getPropertyValue is needed for:
-	//   .css('filter') (IE 9 only, #12537)
-	//   .css('--customProperty) (#3144)
-	if ( computed ) {
-		ret = computed.getPropertyValue( name ) || computed[ name ];
-
-		if ( ret === "" && !isAttached( elem ) ) {
-			ret = jQuery.style( elem, name );
-		}
-
-		// A tribute to the "awesome hack by Dean Edwards"
-		// Android Browser returns percentage for some values,
-		// but width seems to be reliably pixels.
-		// This is against the CSSOM draft spec:
-		// https://drafts.csswg.org/cssom/#resolved-values
-		if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) {
-
-			// Remember the original values
-			width = style.width;
-			minWidth = style.minWidth;
-			maxWidth = style.maxWidth;
-
-			// Put in the new values to get a computed value out
-			style.minWidth = style.maxWidth = style.width = ret;
-			ret = computed.width;
-
-			// Revert the changed values
-			style.width = width;
-			style.minWidth = minWidth;
-			style.maxWidth = maxWidth;
-		}
-	}
-
-	return ret !== undefined ?
-
-		// Support: IE <=9 - 11 only
-		// IE returns zIndex value as an integer.
-		ret + "" :
-		ret;
-}
-
-
-function addGetHookIf( conditionFn, hookFn ) {
-
-	// Define the hook, we'll check on the first run if it's really needed.
-	return {
-		get: function() {
-			if ( conditionFn() ) {
-
-				// Hook not needed (or it's not possible to use it due
-				// to missing dependency), remove it.
-				delete this.get;
-				return;
-			}
-
-			// Hook needed; redefine it so that the support test is not executed again.
-			return ( this.get = hookFn ).apply( this, arguments );
-		}
-	};
-}
-
-
-var cssPrefixes = [ "Webkit", "Moz", "ms" ],
-	emptyStyle = document.createElement( "div" ).style,
-	vendorProps = {};
-
-// Return a vendor-prefixed property or undefined
-function vendorPropName( name ) {
-
-	// Check for vendor prefixed names
-	var capName = name[ 0 ].toUpperCase() + name.slice( 1 ),
-		i = cssPrefixes.length;
-
-	while ( i-- ) {
-		name = cssPrefixes[ i ] + capName;
-		if ( name in emptyStyle ) {
-			return name;
-		}
-	}
-}
-
-// Return a potentially-mapped jQuery.cssProps or vendor prefixed property
-function finalPropName( name ) {
-	var final = jQuery.cssProps[ name ] || vendorProps[ name ];
-
-	if ( final ) {
-		return final;
-	}
-	if ( name in emptyStyle ) {
-		return name;
-	}
-	return vendorProps[ name ] = vendorPropName( name ) || name;
-}
-
-
-var
-
-	// Swappable if display is none or starts with table
-	// except "table", "table-cell", or "table-caption"
-	// See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display
-	rdisplayswap = /^(none|table(?!-c[ea]).+)/,
-	rcustomProp = /^--/,
-	cssShow = { position: "absolute", visibility: "hidden", display: "block" },
-	cssNormalTransform = {
-		letterSpacing: "0",
-		fontWeight: "400"
-	};
-
-function setPositiveNumber( _elem, value, subtract ) {
-
-	// Any relative (+/-) values have already been
-	// normalized at this point
-	var matches = rcssNum.exec( value );
-	return matches ?
-
-		// Guard against undefined "subtract", e.g., when used as in cssHooks
-		Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) :
-		value;
-}
-
-function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) {
-	var i = dimension === "width" ? 1 : 0,
-		extra = 0,
-		delta = 0;
-
-	// Adjustment may not be necessary
-	if ( box === ( isBorderBox ? "border" : "content" ) ) {
-		return 0;
-	}
-
-	for ( ; i < 4; i += 2 ) {
-
-		// Both box models exclude margin
-		if ( box === "margin" ) {
-			delta += jQuery.css( elem, box + cssExpand[ i ], true, styles );
-		}
-
-		// If we get here with a content-box, we're seeking "padding" or "border" or "margin"
-		if ( !isBorderBox ) {
-
-			// Add padding
-			delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-
-			// For "border" or "margin", add border
-			if ( box !== "padding" ) {
-				delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-
-			// But still keep track of it otherwise
-			} else {
-				extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-
-		// If we get here with a border-box (content + padding + border), we're seeking "content" or
-		// "padding" or "margin"
-		} else {
-
-			// For "content", subtract padding
-			if ( box === "content" ) {
-				delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-			}
-
-			// For "content" or "padding", subtract border
-			if ( box !== "margin" ) {
-				delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-		}
-	}
-
-	// Account for positive content-box scroll gutter when requested by providing computedVal
-	if ( !isBorderBox && computedVal >= 0 ) {
-
-		// offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border
-		// Assuming integer scroll gutter, subtract the rest and round down
-		delta += Math.max( 0, Math.ceil(
-			elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-			computedVal -
-			delta -
-			extra -
-			0.5
-
-		// If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter
-		// Use an explicit zero to avoid NaN (gh-3964)
-		) ) || 0;
-	}
-
-	return delta;
-}
-
-function getWidthOrHeight( elem, dimension, extra ) {
-
-	// Start with computed style
-	var styles = getStyles( elem ),
-
-		// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322).
-		// Fake content-box until we know it's needed to know the true value.
-		boxSizingNeeded = !support.boxSizingReliable() || extra,
-		isBorderBox = boxSizingNeeded &&
-			jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-		valueIsBorderBox = isBorderBox,
-
-		val = curCSS( elem, dimension, styles ),
-		offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 );
-
-	// Support: Firefox <=54
-	// Return a confounding non-pixel value or feign ignorance, as appropriate.
-	if ( rnumnonpx.test( val ) ) {
-		if ( !extra ) {
-			return val;
-		}
-		val = "auto";
-	}
-
-
-	// Support: IE 9 - 11 only
-	// Use offsetWidth/offsetHeight for when box sizing is unreliable.
-	// In those cases, the computed value can be trusted to be border-box.
-	if ( ( !support.boxSizingReliable() && isBorderBox ||
-
-		// Support: IE 10 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Interestingly, in some cases IE 9 doesn't suffer from this issue.
-		!support.reliableTrDimensions() && nodeName( elem, "tr" ) ||
-
-		// Fall back to offsetWidth/offsetHeight when value is "auto"
-		// This happens for inline elements with no explicit setting (gh-3571)
-		val === "auto" ||
-
-		// Support: Android <=4.1 - 4.3 only
-		// Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602)
-		!parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) &&
-
-		// Make sure the element is visible & connected
-		elem.getClientRects().length ) {
-
-		isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box";
-
-		// Where available, offsetWidth/offsetHeight approximate border box dimensions.
-		// Where not available (e.g., SVG), assume unreliable box-sizing and interpret the
-		// retrieved value as a content box dimension.
-		valueIsBorderBox = offsetProp in elem;
-		if ( valueIsBorderBox ) {
-			val = elem[ offsetProp ];
-		}
-	}
-
-	// Normalize "" and auto
-	val = parseFloat( val ) || 0;
-
-	// Adjust for the element's box model
-	return ( val +
-		boxModelAdjustment(
-			elem,
-			dimension,
-			extra || ( isBorderBox ? "border" : "content" ),
-			valueIsBorderBox,
-			styles,
-
-			// Provide the current computed size to request scroll gutter calculation (gh-3589)
-			val
-		)
-	) + "px";
-}
-
-jQuery.extend( {
-
-	// Add in style property hooks for overriding the default
-	// behavior of getting and setting a style property
-	cssHooks: {
-		opacity: {
-			get: function( elem, computed ) {
-				if ( computed ) {
-
-					// We should always get a number back from opacity
-					var ret = curCSS( elem, "opacity" );
-					return ret === "" ? "1" : ret;
-				}
-			}
-		}
-	},
-
-	// Don't automatically add "px" to these possibly-unitless properties
-	cssNumber: {
-		"animationIterationCount": true,
-		"columnCount": true,
-		"fillOpacity": true,
-		"flexGrow": true,
-		"flexShrink": true,
-		"fontWeight": true,
-		"gridArea": true,
-		"gridColumn": true,
-		"gridColumnEnd": true,
-		"gridColumnStart": true,
-		"gridRow": true,
-		"gridRowEnd": true,
-		"gridRowStart": true,
-		"lineHeight": true,
-		"opacity": true,
-		"order": true,
-		"orphans": true,
-		"widows": true,
-		"zIndex": true,
-		"zoom": true
-	},
-
-	// Add in properties whose names you wish to fix before
-	// setting or getting the value
-	cssProps: {},
-
-	// Get and set the style property on a DOM Node
-	style: function( elem, name, value, extra ) {
-
-		// Don't set styles on text and comment nodes
-		if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) {
-			return;
-		}
-
-		// Make sure that we're working with the right name
-		var ret, type, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name ),
-			style = elem.style;
-
-		// Make sure that we're working with the right name. We don't
-		// want to query the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Gets hook for the prefixed version, then unprefixed version
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// Check if we're setting a value
-		if ( value !== undefined ) {
-			type = typeof value;
-
-			// Convert "+=" or "-=" to relative numbers (#7345)
-			if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) {
-				value = adjustCSS( elem, name, ret );
-
-				// Fixes bug #9237
-				type = "number";
-			}
-
-			// Make sure that null and NaN values aren't set (#7116)
-			if ( value == null || value !== value ) {
-				return;
-			}
-
-			// If a number was passed in, add the unit (except for certain CSS properties)
-			// The isCustomProp check can be removed in jQuery 4.0 when we only auto-append
-			// "px" to a few hardcoded values.
-			if ( type === "number" && !isCustomProp ) {
-				value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" );
-			}
-
-			// background-* props affect original clone's values
-			if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) {
-				style[ name ] = "inherit";
-			}
-
-			// If a hook was provided, use that value, otherwise just set the specified value
-			if ( !hooks || !( "set" in hooks ) ||
-				( value = hooks.set( elem, value, extra ) ) !== undefined ) {
-
-				if ( isCustomProp ) {
-					style.setProperty( name, value );
-				} else {
-					style[ name ] = value;
-				}
-			}
-
-		} else {
-
-			// If a hook was provided get the non-computed value from there
-			if ( hooks && "get" in hooks &&
-				( ret = hooks.get( elem, false, extra ) ) !== undefined ) {
-
-				return ret;
-			}
-
-			// Otherwise just get the value from the style object
-			return style[ name ];
-		}
-	},
-
-	css: function( elem, name, extra, styles ) {
-		var val, num, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name );
-
-		// Make sure that we're working with the right name. We don't
-		// want to modify the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Try prefixed name followed by the unprefixed name
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// If a hook was provided get the computed value from there
-		if ( hooks && "get" in hooks ) {
-			val = hooks.get( elem, true, extra );
-		}
-
-		// Otherwise, if a way to get the computed value exists, use that
-		if ( val === undefined ) {
-			val = curCSS( elem, name, styles );
-		}
-
-		// Convert "normal" to computed value
-		if ( val === "normal" && name in cssNormalTransform ) {
-			val = cssNormalTransform[ name ];
-		}
-
-		// Make numeric if forced or a qualifier was provided and val looks numeric
-		if ( extra === "" || extra ) {
-			num = parseFloat( val );
-			return extra === true || isFinite( num ) ? num || 0 : val;
-		}
-
-		return val;
-	}
-} );
-
-jQuery.each( [ "height", "width" ], function( _i, dimension ) {
-	jQuery.cssHooks[ dimension ] = {
-		get: function( elem, computed, extra ) {
-			if ( computed ) {
-
-				// Certain elements can have dimension info if we invisibly show them
-				// but it must have a current display style that would benefit
-				return rdisplayswap.test( jQuery.css( elem, "display" ) ) &&
-
-					// Support: Safari 8+
-					// Table columns in Safari have non-zero offsetWidth & zero
-					// getBoundingClientRect().width unless display is changed.
-					// Support: IE <=11 only
-					// Running getBoundingClientRect on a disconnected node
-					// in IE throws an error.
-					( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ?
-					swap( elem, cssShow, function() {
-						return getWidthOrHeight( elem, dimension, extra );
-					} ) :
-					getWidthOrHeight( elem, dimension, extra );
-			}
-		},
-
-		set: function( elem, value, extra ) {
-			var matches,
-				styles = getStyles( elem ),
-
-				// Only read styles.position if the test has a chance to fail
-				// to avoid forcing a reflow.
-				scrollboxSizeBuggy = !support.scrollboxSize() &&
-					styles.position === "absolute",
-
-				// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991)
-				boxSizingNeeded = scrollboxSizeBuggy || extra,
-				isBorderBox = boxSizingNeeded &&
-					jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-				subtract = extra ?
-					boxModelAdjustment(
-						elem,
-						dimension,
-						extra,
-						isBorderBox,
-						styles
-					) :
-					0;
-
-			// Account for unreliable border-box dimensions by comparing offset* to computed and
-			// faking a content-box to get border and padding (gh-3699)
-			if ( isBorderBox && scrollboxSizeBuggy ) {
-				subtract -= Math.ceil(
-					elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-					parseFloat( styles[ dimension ] ) -
-					boxModelAdjustment( elem, dimension, "border", false, styles ) -
-					0.5
-				);
-			}
-
-			// Convert to pixels if value adjustment is needed
-			if ( subtract && ( matches = rcssNum.exec( value ) ) &&
-				( matches[ 3 ] || "px" ) !== "px" ) {
-
-				elem.style[ dimension ] = value;
-				value = jQuery.css( elem, dimension );
-			}
-
-			return setPositiveNumber( elem, value, subtract );
-		}
-	};
-} );
-
-jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft,
-	function( elem, computed ) {
-		if ( computed ) {
-			return ( parseFloat( curCSS( elem, "marginLeft" ) ) ||
-				elem.getBoundingClientRect().left -
-					swap( elem, { marginLeft: 0 }, function() {
-						return elem.getBoundingClientRect().left;
-					} )
-			) + "px";
-		}
-	}
-);
-
-// These hooks are used by animate to expand properties
-jQuery.each( {
-	margin: "",
-	padding: "",
-	border: "Width"
-}, function( prefix, suffix ) {
-	jQuery.cssHooks[ prefix + suffix ] = {
-		expand: function( value ) {
-			var i = 0,
-				expanded = {},
-
-				// Assumes a single number if not a string
-				parts = typeof value === "string" ? value.split( " " ) : [ value ];
-
-			for ( ; i < 4; i++ ) {
-				expanded[ prefix + cssExpand[ i ] + suffix ] =
-					parts[ i ] || parts[ i - 2 ] || parts[ 0 ];
-			}
-
-			return expanded;
-		}
-	};
-
-	if ( prefix !== "margin" ) {
-		jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber;
-	}
-} );
-
-jQuery.fn.extend( {
-	css: function( name, value ) {
-		return access( this, function( elem, name, value ) {
-			var styles, len,
-				map = {},
-				i = 0;
-
-			if ( Array.isArray( name ) ) {
-				styles = getStyles( elem );
-				len = name.length;
-
-				for ( ; i < len; i++ ) {
-					map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles );
-				}
-
-				return map;
-			}
-
-			return value !== undefined ?
-				jQuery.style( elem, name, value ) :
-				jQuery.css( elem, name );
-		}, name, value, arguments.length > 1 );
-	}
-} );
-
-
-function Tween( elem, options, prop, end, easing ) {
-	return new Tween.prototype.init( elem, options, prop, end, easing );
-}
-jQuery.Tween = Tween;
-
-Tween.prototype = {
-	constructor: Tween,
-	init: function( elem, options, prop, end, easing, unit ) {
-		this.elem = elem;
-		this.prop = prop;
-		this.easing = easing || jQuery.easing._default;
-		this.options = options;
-		this.start = this.now = this.cur();
-		this.end = end;
-		this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" );
-	},
-	cur: function() {
-		var hooks = Tween.propHooks[ this.prop ];
-
-		return hooks && hooks.get ?
-			hooks.get( this ) :
-			Tween.propHooks._default.get( this );
-	},
-	run: function( percent ) {
-		var eased,
-			hooks = Tween.propHooks[ this.prop ];
-
-		if ( this.options.duration ) {
-			this.pos = eased = jQuery.easing[ this.easing ](
-				percent, this.options.duration * percent, 0, 1, this.options.duration
-			);
-		} else {
-			this.pos = eased = percent;
-		}
-		this.now = ( this.end - this.start ) * eased + this.start;
-
-		if ( this.options.step ) {
-			this.options.step.call( this.elem, this.now, this );
-		}
-
-		if ( hooks && hooks.set ) {
-			hooks.set( this );
-		} else {
-			Tween.propHooks._default.set( this );
-		}
-		return this;
-	}
-};
-
-Tween.prototype.init.prototype = Tween.prototype;
-
-Tween.propHooks = {
-	_default: {
-		get: function( tween ) {
-			var result;
-
-			// Use a property on the element directly when it is not a DOM element,
-			// or when there is no matching style property that exists.
-			if ( tween.elem.nodeType !== 1 ||
-				tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) {
-				return tween.elem[ tween.prop ];
-			}
-
-			// Passing an empty string as a 3rd parameter to .css will automatically
-			// attempt a parseFloat and fallback to a string if the parse fails.
-			// Simple values such as "10px" are parsed to Float;
-			// complex values such as "rotate(1rad)" are returned as-is.
-			result = jQuery.css( tween.elem, tween.prop, "" );
-
-			// Empty strings, null, undefined and "auto" are converted to 0.
-			return !result || result === "auto" ? 0 : result;
-		},
-		set: function( tween ) {
-
-			// Use step hook for back compat.
-			// Use cssHook if its there.
-			// Use .style if available and use plain properties where available.
-			if ( jQuery.fx.step[ tween.prop ] ) {
-				jQuery.fx.step[ tween.prop ]( tween );
-			} else if ( tween.elem.nodeType === 1 && (
-				jQuery.cssHooks[ tween.prop ] ||
-					tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) {
-				jQuery.style( tween.elem, tween.prop, tween.now + tween.unit );
-			} else {
-				tween.elem[ tween.prop ] = tween.now;
-			}
-		}
-	}
-};
-
-// Support: IE <=9 only
-// Panic based approach to setting things on disconnected nodes
-Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = {
-	set: function( tween ) {
-		if ( tween.elem.nodeType && tween.elem.parentNode ) {
-			tween.elem[ tween.prop ] = tween.now;
-		}
-	}
-};
-
-jQuery.easing = {
-	linear: function( p ) {
-		return p;
-	},
-	swing: function( p ) {
-		return 0.5 - Math.cos( p * Math.PI ) / 2;
-	},
-	_default: "swing"
-};
-
-jQuery.fx = Tween.prototype.init;
-
-// Back compat <1.8 extension point
-jQuery.fx.step = {};
-
-
-
-
-var
-	fxNow, inProgress,
-	rfxtypes = /^(?:toggle|show|hide)$/,
-	rrun = /queueHooks$/;
-
-function schedule() {
-	if ( inProgress ) {
-		if ( document.hidden === false && window.requestAnimationFrame ) {
-			window.requestAnimationFrame( schedule );
-		} else {
-			window.setTimeout( schedule, jQuery.fx.interval );
-		}
-
-		jQuery.fx.tick();
-	}
-}
-
-// Animations created synchronously will run synchronously
-function createFxNow() {
-	window.setTimeout( function() {
-		fxNow = undefined;
-	} );
-	return ( fxNow = Date.now() );
-}
-
-// Generate parameters to create a standard animation
-function genFx( type, includeWidth ) {
-	var which,
-		i = 0,
-		attrs = { height: type };
-
-	// If we include width, step value is 1 to do all cssExpand values,
-	// otherwise step value is 2 to skip over Left and Right
-	includeWidth = includeWidth ? 1 : 0;
-	for ( ; i < 4; i += 2 - includeWidth ) {
-		which = cssExpand[ i ];
-		attrs[ "margin" + which ] = attrs[ "padding" + which ] = type;
-	}
-
-	if ( includeWidth ) {
-		attrs.opacity = attrs.width = type;
-	}
-
-	return attrs;
-}
-
-function createTween( value, prop, animation ) {
-	var tween,
-		collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ),
-		index = 0,
-		length = collection.length;
-	for ( ; index < length; index++ ) {
-		if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) {
-
-			// We're done with this property
-			return tween;
-		}
-	}
-}
-
-function defaultPrefilter( elem, props, opts ) {
-	var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display,
-		isBox = "width" in props || "height" in props,
-		anim = this,
-		orig = {},
-		style = elem.style,
-		hidden = elem.nodeType && isHiddenWithinTree( elem ),
-		dataShow = dataPriv.get( elem, "fxshow" );
-
-	// Queue-skipping animations hijack the fx hooks
-	if ( !opts.queue ) {
-		hooks = jQuery._queueHooks( elem, "fx" );
-		if ( hooks.unqueued == null ) {
-			hooks.unqueued = 0;
-			oldfire = hooks.empty.fire;
-			hooks.empty.fire = function() {
-				if ( !hooks.unqueued ) {
-					oldfire();
-				}
-			};
-		}
-		hooks.unqueued++;
-
-		anim.always( function() {
-
-			// Ensure the complete handler is called before this completes
-			anim.always( function() {
-				hooks.unqueued--;
-				if ( !jQuery.queue( elem, "fx" ).length ) {
-					hooks.empty.fire();
-				}
-			} );
-		} );
-	}
-
-	// Detect show/hide animations
-	for ( prop in props ) {
-		value = props[ prop ];
-		if ( rfxtypes.test( value ) ) {
-			delete props[ prop ];
-			toggle = toggle || value === "toggle";
-			if ( value === ( hidden ? "hide" : "show" ) ) {
-
-				// Pretend to be hidden if this is a "show" and
-				// there is still data from a stopped show/hide
-				if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) {
-					hidden = true;
-
-				// Ignore all other no-op show/hide data
-				} else {
-					continue;
-				}
-			}
-			orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop );
-		}
-	}
-
-	// Bail out if this is a no-op like .hide().hide()
-	propTween = !jQuery.isEmptyObject( props );
-	if ( !propTween && jQuery.isEmptyObject( orig ) ) {
-		return;
-	}
-
-	// Restrict "overflow" and "display" styles during box animations
-	if ( isBox && elem.nodeType === 1 ) {
-
-		// Support: IE <=9 - 11, Edge 12 - 15
-		// Record all 3 overflow attributes because IE does not infer the shorthand
-		// from identically-valued overflowX and overflowY and Edge just mirrors
-		// the overflowX value there.
-		opts.overflow = [ style.overflow, style.overflowX, style.overflowY ];
-
-		// Identify a display type, preferring old show/hide data over the CSS cascade
-		restoreDisplay = dataShow && dataShow.display;
-		if ( restoreDisplay == null ) {
-			restoreDisplay = dataPriv.get( elem, "display" );
-		}
-		display = jQuery.css( elem, "display" );
-		if ( display === "none" ) {
-			if ( restoreDisplay ) {
-				display = restoreDisplay;
-			} else {
-
-				// Get nonempty value(s) by temporarily forcing visibility
-				showHide( [ elem ], true );
-				restoreDisplay = elem.style.display || restoreDisplay;
-				display = jQuery.css( elem, "display" );
-				showHide( [ elem ] );
-			}
-		}
-
-		// Animate inline elements as inline-block
-		if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) {
-			if ( jQuery.css( elem, "float" ) === "none" ) {
-
-				// Restore the original display value at the end of pure show/hide animations
-				if ( !propTween ) {
-					anim.done( function() {
-						style.display = restoreDisplay;
-					} );
-					if ( restoreDisplay == null ) {
-						display = style.display;
-						restoreDisplay = display === "none" ? "" : display;
-					}
-				}
-				style.display = "inline-block";
-			}
-		}
-	}
-
-	if ( opts.overflow ) {
-		style.overflow = "hidden";
-		anim.always( function() {
-			style.overflow = opts.overflow[ 0 ];
-			style.overflowX = opts.overflow[ 1 ];
-			style.overflowY = opts.overflow[ 2 ];
-		} );
-	}
-
-	// Implement show/hide animations
-	propTween = false;
-	for ( prop in orig ) {
-
-		// General show/hide setup for this element animation
-		if ( !propTween ) {
-			if ( dataShow ) {
-				if ( "hidden" in dataShow ) {
-					hidden = dataShow.hidden;
-				}
-			} else {
-				dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } );
-			}
-
-			// Store hidden/visible for toggle so `.stop().toggle()` "reverses"
-			if ( toggle ) {
-				dataShow.hidden = !hidden;
-			}
-
-			// Show elements before animating them
-			if ( hidden ) {
-				showHide( [ elem ], true );
-			}
-
-			/* eslint-disable no-loop-func */
-
-			anim.done( function() {
-
-				/* eslint-enable no-loop-func */
-
-				// The final step of a "hide" animation is actually hiding the element
-				if ( !hidden ) {
-					showHide( [ elem ] );
-				}
-				dataPriv.remove( elem, "fxshow" );
-				for ( prop in orig ) {
-					jQuery.style( elem, prop, orig[ prop ] );
-				}
-			} );
-		}
-
-		// Per-property setup
-		propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim );
-		if ( !( prop in dataShow ) ) {
-			dataShow[ prop ] = propTween.start;
-			if ( hidden ) {
-				propTween.end = propTween.start;
-				propTween.start = 0;
-			}
-		}
-	}
-}
-
-function propFilter( props, specialEasing ) {
-	var index, name, easing, value, hooks;
-
-	// camelCase, specialEasing and expand cssHook pass
-	for ( index in props ) {
-		name = camelCase( index );
-		easing = specialEasing[ name ];
-		value = props[ index ];
-		if ( Array.isArray( value ) ) {
-			easing = value[ 1 ];
-			value = props[ index ] = value[ 0 ];
-		}
-
-		if ( index !== name ) {
-			props[ name ] = value;
-			delete props[ index ];
-		}
-
-		hooks = jQuery.cssHooks[ name ];
-		if ( hooks && "expand" in hooks ) {
-			value = hooks.expand( value );
-			delete props[ name ];
-
-			// Not quite $.extend, this won't overwrite existing keys.
-			// Reusing 'index' because we have the correct "name"
-			for ( index in value ) {
-				if ( !( index in props ) ) {
-					props[ index ] = value[ index ];
-					specialEasing[ index ] = easing;
-				}
-			}
-		} else {
-			specialEasing[ name ] = easing;
-		}
-	}
-}
-
-function Animation( elem, properties, options ) {
-	var result,
-		stopped,
-		index = 0,
-		length = Animation.prefilters.length,
-		deferred = jQuery.Deferred().always( function() {
-
-			// Don't match elem in the :animated selector
-			delete tick.elem;
-		} ),
-		tick = function() {
-			if ( stopped ) {
-				return false;
-			}
-			var currentTime = fxNow || createFxNow(),
-				remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ),
-
-				// Support: Android 2.3 only
-				// Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497)
-				temp = remaining / animation.duration || 0,
-				percent = 1 - temp,
-				index = 0,
-				length = animation.tweens.length;
-
-			for ( ; index < length; index++ ) {
-				animation.tweens[ index ].run( percent );
-			}
-
-			deferred.notifyWith( elem, [ animation, percent, remaining ] );
-
-			// If there's more to do, yield
-			if ( percent < 1 && length ) {
-				return remaining;
-			}
-
-			// If this was an empty animation, synthesize a final progress notification
-			if ( !length ) {
-				deferred.notifyWith( elem, [ animation, 1, 0 ] );
-			}
-
-			// Resolve the animation and report its conclusion
-			deferred.resolveWith( elem, [ animation ] );
-			return false;
-		},
-		animation = deferred.promise( {
-			elem: elem,
-			props: jQuery.extend( {}, properties ),
-			opts: jQuery.extend( true, {
-				specialEasing: {},
-				easing: jQuery.easing._default
-			}, options ),
-			originalProperties: properties,
-			originalOptions: options,
-			startTime: fxNow || createFxNow(),
-			duration: options.duration,
-			tweens: [],
-			createTween: function( prop, end ) {
-				var tween = jQuery.Tween( elem, animation.opts, prop, end,
-					animation.opts.specialEasing[ prop ] || animation.opts.easing );
-				animation.tweens.push( tween );
-				return tween;
-			},
-			stop: function( gotoEnd ) {
-				var index = 0,
-
-					// If we are going to the end, we want to run all the tweens
-					// otherwise we skip this part
-					length = gotoEnd ? animation.tweens.length : 0;
-				if ( stopped ) {
-					return this;
-				}
-				stopped = true;
-				for ( ; index < length; index++ ) {
-					animation.tweens[ index ].run( 1 );
-				}
-
-				// Resolve when we played the last frame; otherwise, reject
-				if ( gotoEnd ) {
-					deferred.notifyWith( elem, [ animation, 1, 0 ] );
-					deferred.resolveWith( elem, [ animation, gotoEnd ] );
-				} else {
-					deferred.rejectWith( elem, [ animation, gotoEnd ] );
-				}
-				return this;
-			}
-		} ),
-		props = animation.props;
-
-	propFilter( props, animation.opts.specialEasing );
-
-	for ( ; index < length; index++ ) {
-		result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts );
-		if ( result ) {
-			if ( isFunction( result.stop ) ) {
-				jQuery._queueHooks( animation.elem, animation.opts.queue ).stop =
-					result.stop.bind( result );
-			}
-			return result;
-		}
-	}
-
-	jQuery.map( props, createTween, animation );
-
-	if ( isFunction( animation.opts.start ) ) {
-		animation.opts.start.call( elem, animation );
-	}
-
-	// Attach callbacks from options
-	animation
-		.progress( animation.opts.progress )
-		.done( animation.opts.done, animation.opts.complete )
-		.fail( animation.opts.fail )
-		.always( animation.opts.always );
-
-	jQuery.fx.timer(
-		jQuery.extend( tick, {
-			elem: elem,
-			anim: animation,
-			queue: animation.opts.queue
-		} )
-	);
-
-	return animation;
-}
-
-jQuery.Animation = jQuery.extend( Animation, {
-
-	tweeners: {
-		"*": [ function( prop, value ) {
-			var tween = this.createTween( prop, value );
-			adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween );
-			return tween;
-		} ]
-	},
-
-	tweener: function( props, callback ) {
-		if ( isFunction( props ) ) {
-			callback = props;
-			props = [ "*" ];
-		} else {
-			props = props.match( rnothtmlwhite );
-		}
-
-		var prop,
-			index = 0,
-			length = props.length;
-
-		for ( ; index < length; index++ ) {
-			prop = props[ index ];
-			Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || [];
-			Animation.tweeners[ prop ].unshift( callback );
-		}
-	},
-
-	prefilters: [ defaultPrefilter ],
-
-	prefilter: function( callback, prepend ) {
-		if ( prepend ) {
-			Animation.prefilters.unshift( callback );
-		} else {
-			Animation.prefilters.push( callback );
-		}
-	}
-} );
-
-jQuery.speed = function( speed, easing, fn ) {
-	var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : {
-		complete: fn || !fn && easing ||
-			isFunction( speed ) && speed,
-		duration: speed,
-		easing: fn && easing || easing && !isFunction( easing ) && easing
-	};
-
-	// Go to the end state if fx are off
-	if ( jQuery.fx.off ) {
-		opt.duration = 0;
-
-	} else {
-		if ( typeof opt.duration !== "number" ) {
-			if ( opt.duration in jQuery.fx.speeds ) {
-				opt.duration = jQuery.fx.speeds[ opt.duration ];
-
-			} else {
-				opt.duration = jQuery.fx.speeds._default;
-			}
-		}
-	}
-
-	// Normalize opt.queue - true/undefined/null -> "fx"
-	if ( opt.queue == null || opt.queue === true ) {
-		opt.queue = "fx";
-	}
-
-	// Queueing
-	opt.old = opt.complete;
-
-	opt.complete = function() {
-		if ( isFunction( opt.old ) ) {
-			opt.old.call( this );
-		}
-
-		if ( opt.queue ) {
-			jQuery.dequeue( this, opt.queue );
-		}
-	};
-
-	return opt;
-};
-
-jQuery.fn.extend( {
-	fadeTo: function( speed, to, easing, callback ) {
-
-		// Show any hidden elements after setting opacity to 0
-		return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show()
-
-			// Animate to the value specified
-			.end().animate( { opacity: to }, speed, easing, callback );
-	},
-	animate: function( prop, speed, easing, callback ) {
-		var empty = jQuery.isEmptyObject( prop ),
-			optall = jQuery.speed( speed, easing, callback ),
-			doAnimation = function() {
-
-				// Operate on a copy of prop so per-property easing won't be lost
-				var anim = Animation( this, jQuery.extend( {}, prop ), optall );
-
-				// Empty animations, or finishing resolves immediately
-				if ( empty || dataPriv.get( this, "finish" ) ) {
-					anim.stop( true );
-				}
-			};
-
-		doAnimation.finish = doAnimation;
-
-		return empty || optall.queue === false ?
-			this.each( doAnimation ) :
-			this.queue( optall.queue, doAnimation );
-	},
-	stop: function( type, clearQueue, gotoEnd ) {
-		var stopQueue = function( hooks ) {
-			var stop = hooks.stop;
-			delete hooks.stop;
-			stop( gotoEnd );
-		};
-
-		if ( typeof type !== "string" ) {
-			gotoEnd = clearQueue;
-			clearQueue = type;
-			type = undefined;
-		}
-		if ( clearQueue ) {
-			this.queue( type || "fx", [] );
-		}
-
-		return this.each( function() {
-			var dequeue = true,
-				index = type != null && type + "queueHooks",
-				timers = jQuery.timers,
-				data = dataPriv.get( this );
-
-			if ( index ) {
-				if ( data[ index ] && data[ index ].stop ) {
-					stopQueue( data[ index ] );
-				}
-			} else {
-				for ( index in data ) {
-					if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) {
-						stopQueue( data[ index ] );
-					}
-				}
-			}
-
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this &&
-					( type == null || timers[ index ].queue === type ) ) {
-
-					timers[ index ].anim.stop( gotoEnd );
-					dequeue = false;
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Start the next in the queue if the last step wasn't forced.
-			// Timers currently will call their complete callbacks, which
-			// will dequeue but only if they were gotoEnd.
-			if ( dequeue || !gotoEnd ) {
-				jQuery.dequeue( this, type );
-			}
-		} );
-	},
-	finish: function( type ) {
-		if ( type !== false ) {
-			type = type || "fx";
-		}
-		return this.each( function() {
-			var index,
-				data = dataPriv.get( this ),
-				queue = data[ type + "queue" ],
-				hooks = data[ type + "queueHooks" ],
-				timers = jQuery.timers,
-				length = queue ? queue.length : 0;
-
-			// Enable finishing flag on private data
-			data.finish = true;
-
-			// Empty the queue first
-			jQuery.queue( this, type, [] );
-
-			if ( hooks && hooks.stop ) {
-				hooks.stop.call( this, true );
-			}
-
-			// Look for any active animations, and finish them
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this && timers[ index ].queue === type ) {
-					timers[ index ].anim.stop( true );
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Look for any animations in the old queue and finish them
-			for ( index = 0; index < length; index++ ) {
-				if ( queue[ index ] && queue[ index ].finish ) {
-					queue[ index ].finish.call( this );
-				}
-			}
-
-			// Turn off finishing flag
-			delete data.finish;
-		} );
-	}
-} );
-
-jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) {
-	var cssFn = jQuery.fn[ name ];
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return speed == null || typeof speed === "boolean" ?
-			cssFn.apply( this, arguments ) :
-			this.animate( genFx( name, true ), speed, easing, callback );
-	};
-} );
-
-// Generate shortcuts for custom animations
-jQuery.each( {
-	slideDown: genFx( "show" ),
-	slideUp: genFx( "hide" ),
-	slideToggle: genFx( "toggle" ),
-	fadeIn: { opacity: "show" },
-	fadeOut: { opacity: "hide" },
-	fadeToggle: { opacity: "toggle" }
-}, function( name, props ) {
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return this.animate( props, speed, easing, callback );
-	};
-} );
-
-jQuery.timers = [];
-jQuery.fx.tick = function() {
-	var timer,
-		i = 0,
-		timers = jQuery.timers;
-
-	fxNow = Date.now();
-
-	for ( ; i < timers.length; i++ ) {
-		timer = timers[ i ];
-
-		// Run the timer and safely remove it when done (allowing for external removal)
-		if ( !timer() && timers[ i ] === timer ) {
-			timers.splice( i--, 1 );
-		}
-	}
-
-	if ( !timers.length ) {
-		jQuery.fx.stop();
-	}
-	fxNow = undefined;
-};
-
-jQuery.fx.timer = function( timer ) {
-	jQuery.timers.push( timer );
-	jQuery.fx.start();
-};
-
-jQuery.fx.interval = 13;
-jQuery.fx.start = function() {
-	if ( inProgress ) {
-		return;
-	}
-
-	inProgress = true;
-	schedule();
-};
-
-jQuery.fx.stop = function() {
-	inProgress = null;
-};
-
-jQuery.fx.speeds = {
-	slow: 600,
-	fast: 200,
-
-	// Default speed
-	_default: 400
-};
-
-
-// Based off of the plugin by Clint Helfers, with permission.
-// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/
-jQuery.fn.delay = function( time, type ) {
-	time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time;
-	type = type || "fx";
-
-	return this.queue( type, function( next, hooks ) {
-		var timeout = window.setTimeout( next, time );
-		hooks.stop = function() {
-			window.clearTimeout( timeout );
-		};
-	} );
-};
-
-
-( function() {
-	var input = document.createElement( "input" ),
-		select = document.createElement( "select" ),
-		opt = select.appendChild( document.createElement( "option" ) );
-
-	input.type = "checkbox";
-
-	// Support: Android <=4.3 only
-	// Default value for a checkbox should be "on"
-	support.checkOn = input.value !== "";
-
-	// Support: IE <=11 only
-	// Must access selectedIndex to make default options select
-	support.optSelected = opt.selected;
-
-	// Support: IE <=11 only
-	// An input loses its value after becoming a radio
-	input = document.createElement( "input" );
-	input.value = "t";
-	input.type = "radio";
-	support.radioValue = input.value === "t";
-} )();
-
-
-var boolHook,
-	attrHandle = jQuery.expr.attrHandle;
-
-jQuery.fn.extend( {
-	attr: function( name, value ) {
-		return access( this, jQuery.attr, name, value, arguments.length > 1 );
-	},
-
-	removeAttr: function( name ) {
-		return this.each( function() {
-			jQuery.removeAttr( this, name );
-		} );
-	}
-} );
-
-jQuery.extend( {
-	attr: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set attributes on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		// Fallback to prop when attributes are not supported
-		if ( typeof elem.getAttribute === "undefined" ) {
-			return jQuery.prop( elem, name, value );
-		}
-
-		// Attribute hooks are determined by the lowercase version
-		// Grab necessary hook if one is defined
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-			hooks = jQuery.attrHooks[ name.toLowerCase() ] ||
-				( jQuery.expr.match.bool.test( name ) ? boolHook : undefined );
-		}
-
-		if ( value !== undefined ) {
-			if ( value === null ) {
-				jQuery.removeAttr( elem, name );
-				return;
-			}
-
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			elem.setAttribute( name, value + "" );
-			return value;
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		ret = jQuery.find.attr( elem, name );
-
-		// Non-existent attributes return null, we normalize to undefined
-		return ret == null ? undefined : ret;
-	},
-
-	attrHooks: {
-		type: {
-			set: function( elem, value ) {
-				if ( !support.radioValue && value === "radio" &&
-					nodeName( elem, "input" ) ) {
-					var val = elem.value;
-					elem.setAttribute( "type", value );
-					if ( val ) {
-						elem.value = val;
-					}
-					return value;
-				}
-			}
-		}
-	},
-
-	removeAttr: function( elem, value ) {
-		var name,
-			i = 0,
-
-			// Attribute names can contain non-HTML whitespace characters
-			// https://html.spec.whatwg.org/multipage/syntax.html#attributes-2
-			attrNames = value && value.match( rnothtmlwhite );
-
-		if ( attrNames && elem.nodeType === 1 ) {
-			while ( ( name = attrNames[ i++ ] ) ) {
-				elem.removeAttribute( name );
-			}
-		}
-	}
-} );
-
-// Hooks for boolean attributes
-boolHook = {
-	set: function( elem, value, name ) {
-		if ( value === false ) {
-
-			// Remove boolean attributes when set to false
-			jQuery.removeAttr( elem, name );
-		} else {
-			elem.setAttribute( name, name );
-		}
-		return name;
-	}
-};
-
-jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) {
-	var getter = attrHandle[ name ] || jQuery.find.attr;
-
-	attrHandle[ name ] = function( elem, name, isXML ) {
-		var ret, handle,
-			lowercaseName = name.toLowerCase();
-
-		if ( !isXML ) {
-
-			// Avoid an infinite loop by temporarily removing this function from the getter
-			handle = attrHandle[ lowercaseName ];
-			attrHandle[ lowercaseName ] = ret;
-			ret = getter( elem, name, isXML ) != null ?
-				lowercaseName :
-				null;
-			attrHandle[ lowercaseName ] = handle;
-		}
-		return ret;
-	};
-} );
-
-
-
-
-var rfocusable = /^(?:input|select|textarea|button)$/i,
-	rclickable = /^(?:a|area)$/i;
-
-jQuery.fn.extend( {
-	prop: function( name, value ) {
-		return access( this, jQuery.prop, name, value, arguments.length > 1 );
-	},
-
-	removeProp: function( name ) {
-		return this.each( function() {
-			delete this[ jQuery.propFix[ name ] || name ];
-		} );
-	}
-} );
-
-jQuery.extend( {
-	prop: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set properties on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-
-			// Fix name and attach hooks
-			name = jQuery.propFix[ name ] || name;
-			hooks = jQuery.propHooks[ name ];
-		}
-
-		if ( value !== undefined ) {
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			return ( elem[ name ] = value );
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		return elem[ name ];
-	},
-
-	propHooks: {
-		tabIndex: {
-			get: function( elem ) {
-
-				// Support: IE <=9 - 11 only
-				// elem.tabIndex doesn't always return the
-				// correct value when it hasn't been explicitly set
-				// https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/
-				// Use proper attribute retrieval(#12072)
-				var tabindex = jQuery.find.attr( elem, "tabindex" );
-
-				if ( tabindex ) {
-					return parseInt( tabindex, 10 );
-				}
-
-				if (
-					rfocusable.test( elem.nodeName ) ||
-					rclickable.test( elem.nodeName ) &&
-					elem.href
-				) {
-					return 0;
-				}
-
-				return -1;
-			}
-		}
-	},
-
-	propFix: {
-		"for": "htmlFor",
-		"class": "className"
-	}
-} );
-
-// Support: IE <=11 only
-// Accessing the selectedIndex property
-// forces the browser to respect setting selected
-// on the option
-// The getter ensures a default option is selected
-// when in an optgroup
-// eslint rule "no-unused-expressions" is disabled for this code
-// since it considers such accessions noop
-if ( !support.optSelected ) {
-	jQuery.propHooks.selected = {
-		get: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent && parent.parentNode ) {
-				parent.parentNode.selectedIndex;
-			}
-			return null;
-		},
-		set: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent ) {
-				parent.selectedIndex;
-
-				if ( parent.parentNode ) {
-					parent.parentNode.selectedIndex;
-				}
-			}
-		}
-	};
-}
-
-jQuery.each( [
-	"tabIndex",
-	"readOnly",
-	"maxLength",
-	"cellSpacing",
-	"cellPadding",
-	"rowSpan",
-	"colSpan",
-	"useMap",
-	"frameBorder",
-	"contentEditable"
-], function() {
-	jQuery.propFix[ this.toLowerCase() ] = this;
-} );
-
-
-
-
-	// Strip and collapse whitespace according to HTML spec
-	// https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace
-	function stripAndCollapse( value ) {
-		var tokens = value.match( rnothtmlwhite ) || [];
-		return tokens.join( " " );
-	}
-
-
-function getClass( elem ) {
-	return elem.getAttribute && elem.getAttribute( "class" ) || "";
-}
-
-function classesToArray( value ) {
-	if ( Array.isArray( value ) ) {
-		return value;
-	}
-	if ( typeof value === "string" ) {
-		return value.match( rnothtmlwhite ) || [];
-	}
-	return [];
-}
-
-jQuery.fn.extend( {
-	addClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).addClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-						if ( cur.indexOf( " " + clazz + " " ) < 0 ) {
-							cur += clazz + " ";
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	removeClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		if ( !arguments.length ) {
-			return this.attr( "class", "" );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-
-				// This expression is here for better compressibility (see addClass)
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-
-						// Remove *all* instances
-						while ( cur.indexOf( " " + clazz + " " ) > -1 ) {
-							cur = cur.replace( " " + clazz + " ", " " );
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	toggleClass: function( value, stateVal ) {
-		var type = typeof value,
-			isValidValue = type === "string" || Array.isArray( value );
-
-		if ( typeof stateVal === "boolean" && isValidValue ) {
-			return stateVal ? this.addClass( value ) : this.removeClass( value );
-		}
-
-		if ( isFunction( value ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).toggleClass(
-					value.call( this, i, getClass( this ), stateVal ),
-					stateVal
-				);
-			} );
-		}
-
-		return this.each( function() {
-			var className, i, self, classNames;
-
-			if ( isValidValue ) {
-
-				// Toggle individual class names
-				i = 0;
-				self = jQuery( this );
-				classNames = classesToArray( value );
-
-				while ( ( className = classNames[ i++ ] ) ) {
-
-					// Check each className given, space separated list
-					if ( self.hasClass( className ) ) {
-						self.removeClass( className );
-					} else {
-						self.addClass( className );
-					}
-				}
-
-			// Toggle whole class name
-			} else if ( value === undefined || type === "boolean" ) {
-				className = getClass( this );
-				if ( className ) {
-
-					// Store className if set
-					dataPriv.set( this, "__className__", className );
-				}
-
-				// If the element has a class name or if we're passed `false`,
-				// then remove the whole classname (if there was one, the above saved it).
-				// Otherwise bring back whatever was previously saved (if anything),
-				// falling back to the empty string if nothing was stored.
-				if ( this.setAttribute ) {
-					this.setAttribute( "class",
-						className || value === false ?
-							"" :
-							dataPriv.get( this, "__className__" ) || ""
-					);
-				}
-			}
-		} );
-	},
-
-	hasClass: function( selector ) {
-		var className, elem,
-			i = 0;
-
-		className = " " + selector + " ";
-		while ( ( elem = this[ i++ ] ) ) {
-			if ( elem.nodeType === 1 &&
-				( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) {
-				return true;
-			}
-		}
-
-		return false;
-	}
-} );
-
-
-
-
-var rreturn = /\r/g;
-
-jQuery.fn.extend( {
-	val: function( value ) {
-		var hooks, ret, valueIsFunction,
-			elem = this[ 0 ];
-
-		if ( !arguments.length ) {
-			if ( elem ) {
-				hooks = jQuery.valHooks[ elem.type ] ||
-					jQuery.valHooks[ elem.nodeName.toLowerCase() ];
-
-				if ( hooks &&
-					"get" in hooks &&
-					( ret = hooks.get( elem, "value" ) ) !== undefined
-				) {
-					return ret;
-				}
-
-				ret = elem.value;
-
-				// Handle most common string cases
-				if ( typeof ret === "string" ) {
-					return ret.replace( rreturn, "" );
-				}
-
-				// Handle cases where value is null/undef or number
-				return ret == null ? "" : ret;
-			}
-
-			return;
-		}
-
-		valueIsFunction = isFunction( value );
-
-		return this.each( function( i ) {
-			var val;
-
-			if ( this.nodeType !== 1 ) {
-				return;
-			}
-
-			if ( valueIsFunction ) {
-				val = value.call( this, i, jQuery( this ).val() );
-			} else {
-				val = value;
-			}
-
-			// Treat null/undefined as ""; convert numbers to string
-			if ( val == null ) {
-				val = "";
-
-			} else if ( typeof val === "number" ) {
-				val += "";
-
-			} else if ( Array.isArray( val ) ) {
-				val = jQuery.map( val, function( value ) {
-					return value == null ? "" : value + "";
-				} );
-			}
-
-			hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ];
-
-			// If set returns undefined, fall back to normal setting
-			if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) {
-				this.value = val;
-			}
-		} );
-	}
-} );
-
-jQuery.extend( {
-	valHooks: {
-		option: {
-			get: function( elem ) {
-
-				var val = jQuery.find.attr( elem, "value" );
-				return val != null ?
-					val :
-
-					// Support: IE <=10 - 11 only
-					// option.text throws exceptions (#14686, #14858)
-					// Strip and collapse whitespace
-					// https://html.spec.whatwg.org/#strip-and-collapse-whitespace
-					stripAndCollapse( jQuery.text( elem ) );
-			}
-		},
-		select: {
-			get: function( elem ) {
-				var value, option, i,
-					options = elem.options,
-					index = elem.selectedIndex,
-					one = elem.type === "select-one",
-					values = one ? null : [],
-					max = one ? index + 1 : options.length;
-
-				if ( index < 0 ) {
-					i = max;
-
-				} else {
-					i = one ? index : 0;
-				}
-
-				// Loop through all the selected options
-				for ( ; i < max; i++ ) {
-					option = options[ i ];
-
-					// Support: IE <=9 only
-					// IE8-9 doesn't update selected after form reset (#2551)
-					if ( ( option.selected || i === index ) &&
-
-							// Don't return options that are disabled or in a disabled optgroup
-							!option.disabled &&
-							( !option.parentNode.disabled ||
-								!nodeName( option.parentNode, "optgroup" ) ) ) {
-
-						// Get the specific value for the option
-						value = jQuery( option ).val();
-
-						// We don't need an array for one selects
-						if ( one ) {
-							return value;
-						}
-
-						// Multi-Selects return an array
-						values.push( value );
-					}
-				}
-
-				return values;
-			},
-
-			set: function( elem, value ) {
-				var optionSet, option,
-					options = elem.options,
-					values = jQuery.makeArray( value ),
-					i = options.length;
-
-				while ( i-- ) {
-					option = options[ i ];
-
-					/* eslint-disable no-cond-assign */
-
-					if ( option.selected =
-						jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1
-					) {
-						optionSet = true;
-					}
-
-					/* eslint-enable no-cond-assign */
-				}
-
-				// Force browsers to behave consistently when non-matching value is set
-				if ( !optionSet ) {
-					elem.selectedIndex = -1;
-				}
-				return values;
-			}
-		}
-	}
-} );
-
-// Radios and checkboxes getter/setter
-jQuery.each( [ "radio", "checkbox" ], function() {
-	jQuery.valHooks[ this ] = {
-		set: function( elem, value ) {
-			if ( Array.isArray( value ) ) {
-				return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 );
-			}
-		}
-	};
-	if ( !support.checkOn ) {
-		jQuery.valHooks[ this ].get = function( elem ) {
-			return elem.getAttribute( "value" ) === null ? "on" : elem.value;
-		};
-	}
-} );
-
-
-
-
-// Return jQuery for attributes-only inclusion
-
-
-support.focusin = "onfocusin" in window;
-
-
-var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/,
-	stopPropagationCallback = function( e ) {
-		e.stopPropagation();
-	};
-
-jQuery.extend( jQuery.event, {
-
-	trigger: function( event, data, elem, onlyHandlers ) {
-
-		var i, cur, tmp, bubbleType, ontype, handle, special, lastElement,
-			eventPath = [ elem || document ],
-			type = hasOwn.call( event, "type" ) ? event.type : event,
-			namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : [];
-
-		cur = lastElement = tmp = elem = elem || document;
-
-		// Don't do events on text and comment nodes
-		if ( elem.nodeType === 3 || elem.nodeType === 8 ) {
-			return;
-		}
-
-		// focus/blur morphs to focusin/out; ensure we're not firing them right now
-		if ( rfocusMorph.test( type + jQuery.event.triggered ) ) {
-			return;
-		}
-
-		if ( type.indexOf( "." ) > -1 ) {
-
-			// Namespaced trigger; create a regexp to match event type in handle()
-			namespaces = type.split( "." );
-			type = namespaces.shift();
-			namespaces.sort();
-		}
-		ontype = type.indexOf( ":" ) < 0 && "on" + type;
-
-		// Caller can pass in a jQuery.Event object, Object, or just an event type string
-		event = event[ jQuery.expando ] ?
-			event :
-			new jQuery.Event( type, typeof event === "object" && event );
-
-		// Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true)
-		event.isTrigger = onlyHandlers ? 2 : 3;
-		event.namespace = namespaces.join( "." );
-		event.rnamespace = event.namespace ?
-			new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) :
-			null;
-
-		// Clean up the event in case it is being reused
-		event.result = undefined;
-		if ( !event.target ) {
-			event.target = elem;
-		}
-
-		// Clone any incoming data and prepend the event, creating the handler arg list
-		data = data == null ?
-			[ event ] :
-			jQuery.makeArray( data, [ event ] );
-
-		// Allow special events to draw outside the lines
-		special = jQuery.event.special[ type ] || {};
-		if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) {
-			return;
-		}
-
-		// Determine event propagation path in advance, per W3C events spec (#9951)
-		// Bubble up to document, then to window; watch for a global ownerDocument var (#9724)
-		if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) {
-
-			bubbleType = special.delegateType || type;
-			if ( !rfocusMorph.test( bubbleType + type ) ) {
-				cur = cur.parentNode;
-			}
-			for ( ; cur; cur = cur.parentNode ) {
-				eventPath.push( cur );
-				tmp = cur;
-			}
-
-			// Only add window if we got to document (e.g., not plain obj or detached DOM)
-			if ( tmp === ( elem.ownerDocument || document ) ) {
-				eventPath.push( tmp.defaultView || tmp.parentWindow || window );
-			}
-		}
-
-		// Fire handlers on the event path
-		i = 0;
-		while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) {
-			lastElement = cur;
-			event.type = i > 1 ?
-				bubbleType :
-				special.bindType || type;
-
-			// jQuery handler
-			handle = ( dataPriv.get( cur, "events" ) || Object.create( null ) )[ event.type ] &&
-				dataPriv.get( cur, "handle" );
-			if ( handle ) {
-				handle.apply( cur, data );
-			}
-
-			// Native handler
-			handle = ontype && cur[ ontype ];
-			if ( handle && handle.apply && acceptData( cur ) ) {
-				event.result = handle.apply( cur, data );
-				if ( event.result === false ) {
-					event.preventDefault();
-				}
-			}
-		}
-		event.type = type;
-
-		// If nobody prevented the default action, do it now
-		if ( !onlyHandlers && !event.isDefaultPrevented() ) {
-
-			if ( ( !special._default ||
-				special._default.apply( eventPath.pop(), data ) === false ) &&
-				acceptData( elem ) ) {
-
-				// Call a native DOM method on the target with the same name as the event.
-				// Don't do default actions on window, that's where global variables be (#6170)
-				if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) {
-
-					// Don't re-trigger an onFOO event when we call its FOO() method
-					tmp = elem[ ontype ];
-
-					if ( tmp ) {
-						elem[ ontype ] = null;
-					}
-
-					// Prevent re-triggering of the same event, since we already bubbled it above
-					jQuery.event.triggered = type;
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.addEventListener( type, stopPropagationCallback );
-					}
-
-					elem[ type ]();
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.removeEventListener( type, stopPropagationCallback );
-					}
-
-					jQuery.event.triggered = undefined;
-
-					if ( tmp ) {
-						elem[ ontype ] = tmp;
-					}
-				}
-			}
-		}
-
-		return event.result;
-	},
-
-	// Piggyback on a donor event to simulate a different one
-	// Used only for `focus(in | out)` events
-	simulate: function( type, elem, event ) {
-		var e = jQuery.extend(
-			new jQuery.Event(),
-			event,
-			{
-				type: type,
-				isSimulated: true
-			}
-		);
-
-		jQuery.event.trigger( e, null, elem );
-	}
-
-} );
-
-jQuery.fn.extend( {
-
-	trigger: function( type, data ) {
-		return this.each( function() {
-			jQuery.event.trigger( type, data, this );
-		} );
-	},
-	triggerHandler: function( type, data ) {
-		var elem = this[ 0 ];
-		if ( elem ) {
-			return jQuery.event.trigger( type, data, elem, true );
-		}
-	}
-} );
-
-
-// Support: Firefox <=44
-// Firefox doesn't have focus(in | out) events
-// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787
-//
-// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1
-// focus(in | out) events fire after focus & blur events,
-// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order
-// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857
-if ( !support.focusin ) {
-	jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) {
-
-		// Attach a single capturing handler on the document while someone wants focusin/focusout
-		var handler = function( event ) {
-			jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) );
-		};
-
-		jQuery.event.special[ fix ] = {
-			setup: function() {
-
-				// Handle: regular nodes (via `this.ownerDocument`), window
-				// (via `this.document`) & document (via `this`).
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix );
-
-				if ( !attaches ) {
-					doc.addEventListener( orig, handler, true );
-				}
-				dataPriv.access( doc, fix, ( attaches || 0 ) + 1 );
-			},
-			teardown: function() {
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix ) - 1;
-
-				if ( !attaches ) {
-					doc.removeEventListener( orig, handler, true );
-					dataPriv.remove( doc, fix );
-
-				} else {
-					dataPriv.access( doc, fix, attaches );
-				}
-			}
-		};
-	} );
-}
-var location = window.location;
-
-var nonce = { guid: Date.now() };
-
-var rquery = ( /\?/ );
-
-
-
-// Cross-browser xml parsing
-jQuery.parseXML = function( data ) {
-	var xml, parserErrorElem;
-	if ( !data || typeof data !== "string" ) {
-		return null;
-	}
-
-	// Support: IE 9 - 11 only
-	// IE throws on parseFromString with invalid input.
-	try {
-		xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" );
-	} catch ( e ) {}
-
-	parserErrorElem = xml && xml.getElementsByTagName( "parsererror" )[ 0 ];
-	if ( !xml || parserErrorElem ) {
-		jQuery.error( "Invalid XML: " + (
-			parserErrorElem ?
-				jQuery.map( parserErrorElem.childNodes, function( el ) {
-					return el.textContent;
-				} ).join( "\n" ) :
-				data
-		) );
-	}
-	return xml;
-};
-
-
-var
-	rbracket = /\[\]$/,
-	rCRLF = /\r?\n/g,
-	rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i,
-	rsubmittable = /^(?:input|select|textarea|keygen)/i;
-
-function buildParams( prefix, obj, traditional, add ) {
-	var name;
-
-	if ( Array.isArray( obj ) ) {
-
-		// Serialize array item.
-		jQuery.each( obj, function( i, v ) {
-			if ( traditional || rbracket.test( prefix ) ) {
-
-				// Treat each array item as a scalar.
-				add( prefix, v );
-
-			} else {
-
-				// Item is non-scalar (array or object), encode its numeric index.
-				buildParams(
-					prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]",
-					v,
-					traditional,
-					add
-				);
-			}
-		} );
-
-	} else if ( !traditional && toType( obj ) === "object" ) {
-
-		// Serialize object item.
-		for ( name in obj ) {
-			buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add );
-		}
-
-	} else {
-
-		// Serialize scalar item.
-		add( prefix, obj );
-	}
-}
-
-// Serialize an array of form elements or a set of
-// key/values into a query string
-jQuery.param = function( a, traditional ) {
-	var prefix,
-		s = [],
-		add = function( key, valueOrFunction ) {
-
-			// If value is a function, invoke it and use its return value
-			var value = isFunction( valueOrFunction ) ?
-				valueOrFunction() :
-				valueOrFunction;
-
-			s[ s.length ] = encodeURIComponent( key ) + "=" +
-				encodeURIComponent( value == null ? "" : value );
-		};
-
-	if ( a == null ) {
-		return "";
-	}
-
-	// If an array was passed in, assume that it is an array of form elements.
-	if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) {
-
-		// Serialize the form elements
-		jQuery.each( a, function() {
-			add( this.name, this.value );
-		} );
-
-	} else {
-
-		// If traditional, encode the "old" way (the way 1.3.2 or older
-		// did it), otherwise encode params recursively.
-		for ( prefix in a ) {
-			buildParams( prefix, a[ prefix ], traditional, add );
-		}
-	}
-
-	// Return the resulting serialization
-	return s.join( "&" );
-};
-
-jQuery.fn.extend( {
-	serialize: function() {
-		return jQuery.param( this.serializeArray() );
-	},
-	serializeArray: function() {
-		return this.map( function() {
-
-			// Can add propHook for "elements" to filter or add form elements
-			var elements = jQuery.prop( this, "elements" );
-			return elements ? jQuery.makeArray( elements ) : this;
-		} ).filter( function() {
-			var type = this.type;
-
-			// Use .is( ":disabled" ) so that fieldset[disabled] works
-			return this.name && !jQuery( this ).is( ":disabled" ) &&
-				rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) &&
-				( this.checked || !rcheckableType.test( type ) );
-		} ).map( function( _i, elem ) {
-			var val = jQuery( this ).val();
-
-			if ( val == null ) {
-				return null;
-			}
-
-			if ( Array.isArray( val ) ) {
-				return jQuery.map( val, function( val ) {
-					return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-				} );
-			}
-
-			return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-		} ).get();
-	}
-} );
-
-
-var
-	r20 = /%20/g,
-	rhash = /#.*$/,
-	rantiCache = /([?&])_=[^&]*/,
-	rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg,
-
-	// #7653, #8125, #8152: local protocol detection
-	rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/,
-	rnoContent = /^(?:GET|HEAD)$/,
-	rprotocol = /^\/\//,
-
-	/* Prefilters
-	 * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example)
-	 * 2) These are called:
-	 *    - BEFORE asking for a transport
-	 *    - AFTER param serialization (s.data is a string if s.processData is true)
-	 * 3) key is the dataType
-	 * 4) the catchall symbol "*" can be used
-	 * 5) execution will start with transport dataType and THEN continue down to "*" if needed
-	 */
-	prefilters = {},
-
-	/* Transports bindings
-	 * 1) key is the dataType
-	 * 2) the catchall symbol "*" can be used
-	 * 3) selection will start with transport dataType and THEN go to "*" if needed
-	 */
-	transports = {},
-
-	// Avoid comment-prolog char sequence (#10098); must appease lint and evade compression
-	allTypes = "*/".concat( "*" ),
-
-	// Anchor tag for parsing the document origin
-	originAnchor = document.createElement( "a" );
-
-originAnchor.href = location.href;
-
-// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport
-function addToPrefiltersOrTransports( structure ) {
-
-	// dataTypeExpression is optional and defaults to "*"
-	return function( dataTypeExpression, func ) {
-
-		if ( typeof dataTypeExpression !== "string" ) {
-			func = dataTypeExpression;
-			dataTypeExpression = "*";
-		}
-
-		var dataType,
-			i = 0,
-			dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || [];
-
-		if ( isFunction( func ) ) {
-
-			// For each dataType in the dataTypeExpression
-			while ( ( dataType = dataTypes[ i++ ] ) ) {
-
-				// Prepend if requested
-				if ( dataType[ 0 ] === "+" ) {
-					dataType = dataType.slice( 1 ) || "*";
-					( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func );
-
-				// Otherwise append
-				} else {
-					( structure[ dataType ] = structure[ dataType ] || [] ).push( func );
-				}
-			}
-		}
-	};
-}
-
-// Base inspection function for prefilters and transports
-function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) {
-
-	var inspected = {},
-		seekingTransport = ( structure === transports );
-
-	function inspect( dataType ) {
-		var selected;
-		inspected[ dataType ] = true;
-		jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) {
-			var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR );
-			if ( typeof dataTypeOrTransport === "string" &&
-				!seekingTransport && !inspected[ dataTypeOrTransport ] ) {
-
-				options.dataTypes.unshift( dataTypeOrTransport );
-				inspect( dataTypeOrTransport );
-				return false;
-			} else if ( seekingTransport ) {
-				return !( selected = dataTypeOrTransport );
-			}
-		} );
-		return selected;
-	}
-
-	return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" );
-}
-
-// A special extend for ajax options
-// that takes "flat" options (not to be deep extended)
-// Fixes #9887
-function ajaxExtend( target, src ) {
-	var key, deep,
-		flatOptions = jQuery.ajaxSettings.flatOptions || {};
-
-	for ( key in src ) {
-		if ( src[ key ] !== undefined ) {
-			( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ];
-		}
-	}
-	if ( deep ) {
-		jQuery.extend( true, target, deep );
-	}
-
-	return target;
-}
-
-/* Handles responses to an ajax request:
- * - finds the right dataType (mediates between content-type and expected dataType)
- * - returns the corresponding response
- */
-function ajaxHandleResponses( s, jqXHR, responses ) {
-
-	var ct, type, finalDataType, firstDataType,
-		contents = s.contents,
-		dataTypes = s.dataTypes;
-
-	// Remove auto dataType and get content-type in the process
-	while ( dataTypes[ 0 ] === "*" ) {
-		dataTypes.shift();
-		if ( ct === undefined ) {
-			ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" );
-		}
-	}
-
-	// Check if we're dealing with a known content-type
-	if ( ct ) {
-		for ( type in contents ) {
-			if ( contents[ type ] && contents[ type ].test( ct ) ) {
-				dataTypes.unshift( type );
-				break;
-			}
-		}
-	}
-
-	// Check to see if we have a response for the expected dataType
-	if ( dataTypes[ 0 ] in responses ) {
-		finalDataType = dataTypes[ 0 ];
-	} else {
-
-		// Try convertible dataTypes
-		for ( type in responses ) {
-			if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) {
-				finalDataType = type;
-				break;
-			}
-			if ( !firstDataType ) {
-				firstDataType = type;
-			}
-		}
-
-		// Or just use first one
-		finalDataType = finalDataType || firstDataType;
-	}
-
-	// If we found a dataType
-	// We add the dataType to the list if needed
-	// and return the corresponding response
-	if ( finalDataType ) {
-		if ( finalDataType !== dataTypes[ 0 ] ) {
-			dataTypes.unshift( finalDataType );
-		}
-		return responses[ finalDataType ];
-	}
-}
-
-/* Chain conversions given the request and the original response
- * Also sets the responseXXX fields on the jqXHR instance
- */
-function ajaxConvert( s, response, jqXHR, isSuccess ) {
-	var conv2, current, conv, tmp, prev,
-		converters = {},
-
-		// Work with a copy of dataTypes in case we need to modify it for conversion
-		dataTypes = s.dataTypes.slice();
-
-	// Create converters map with lowercased keys
-	if ( dataTypes[ 1 ] ) {
-		for ( conv in s.converters ) {
-			converters[ conv.toLowerCase() ] = s.converters[ conv ];
-		}
-	}
-
-	current = dataTypes.shift();
-
-	// Convert to each sequential dataType
-	while ( current ) {
-
-		if ( s.responseFields[ current ] ) {
-			jqXHR[ s.responseFields[ current ] ] = response;
-		}
-
-		// Apply the dataFilter if provided
-		if ( !prev && isSuccess && s.dataFilter ) {
-			response = s.dataFilter( response, s.dataType );
-		}
-
-		prev = current;
-		current = dataTypes.shift();
-
-		if ( current ) {
-
-			// There's only work to do if current dataType is non-auto
-			if ( current === "*" ) {
-
-				current = prev;
-
-			// Convert response if prev dataType is non-auto and differs from current
-			} else if ( prev !== "*" && prev !== current ) {
-
-				// Seek a direct converter
-				conv = converters[ prev + " " + current ] || converters[ "* " + current ];
-
-				// If none found, seek a pair
-				if ( !conv ) {
-					for ( conv2 in converters ) {
-
-						// If conv2 outputs current
-						tmp = conv2.split( " " );
-						if ( tmp[ 1 ] === current ) {
-
-							// If prev can be converted to accepted input
-							conv = converters[ prev + " " + tmp[ 0 ] ] ||
-								converters[ "* " + tmp[ 0 ] ];
-							if ( conv ) {
-
-								// Condense equivalence converters
-								if ( conv === true ) {
-									conv = converters[ conv2 ];
-
-								// Otherwise, insert the intermediate dataType
-								} else if ( converters[ conv2 ] !== true ) {
-									current = tmp[ 0 ];
-									dataTypes.unshift( tmp[ 1 ] );
-								}
-								break;
-							}
-						}
-					}
-				}
-
-				// Apply converter (if not an equivalence)
-				if ( conv !== true ) {
-
-					// Unless errors are allowed to bubble, catch and return them
-					if ( conv && s.throws ) {
-						response = conv( response );
-					} else {
-						try {
-							response = conv( response );
-						} catch ( e ) {
-							return {
-								state: "parsererror",
-								error: conv ? e : "No conversion from " + prev + " to " + current
-							};
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return { state: "success", data: response };
-}
-
-jQuery.extend( {
-
-	// Counter for holding the number of active queries
-	active: 0,
-
-	// Last-Modified header cache for next request
-	lastModified: {},
-	etag: {},
-
-	ajaxSettings: {
-		url: location.href,
-		type: "GET",
-		isLocal: rlocalProtocol.test( location.protocol ),
-		global: true,
-		processData: true,
-		async: true,
-		contentType: "application/x-www-form-urlencoded; charset=UTF-8",
-
-		/*
-		timeout: 0,
-		data: null,
-		dataType: null,
-		username: null,
-		password: null,
-		cache: null,
-		throws: false,
-		traditional: false,
-		headers: {},
-		*/
-
-		accepts: {
-			"*": allTypes,
-			text: "text/plain",
-			html: "text/html",
-			xml: "application/xml, text/xml",
-			json: "application/json, text/javascript"
-		},
-
-		contents: {
-			xml: /\bxml\b/,
-			html: /\bhtml/,
-			json: /\bjson\b/
-		},
-
-		responseFields: {
-			xml: "responseXML",
-			text: "responseText",
-			json: "responseJSON"
-		},
-
-		// Data converters
-		// Keys separate source (or catchall "*") and destination types with a single space
-		converters: {
-
-			// Convert anything to text
-			"* text": String,
-
-			// Text to html (true = no transformation)
-			"text html": true,
-
-			// Evaluate text as a json expression
-			"text json": JSON.parse,
-
-			// Parse text as xml
-			"text xml": jQuery.parseXML
-		},
-
-		// For options that shouldn't be deep extended:
-		// you can add your own custom options here if
-		// and when you create one that shouldn't be
-		// deep extended (see ajaxExtend)
-		flatOptions: {
-			url: true,
-			context: true
-		}
-	},
-
-	// Creates a full fledged settings object into target
-	// with both ajaxSettings and settings fields.
-	// If target is omitted, writes into ajaxSettings.
-	ajaxSetup: function( target, settings ) {
-		return settings ?
-
-			// Building a settings object
-			ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) :
-
-			// Extending ajaxSettings
-			ajaxExtend( jQuery.ajaxSettings, target );
-	},
-
-	ajaxPrefilter: addToPrefiltersOrTransports( prefilters ),
-	ajaxTransport: addToPrefiltersOrTransports( transports ),
-
-	// Main method
-	ajax: function( url, options ) {
-
-		// If url is an object, simulate pre-1.5 signature
-		if ( typeof url === "object" ) {
-			options = url;
-			url = undefined;
-		}
-
-		// Force options to be an object
-		options = options || {};
-
-		var transport,
-
-			// URL without anti-cache param
-			cacheURL,
-
-			// Response headers
-			responseHeadersString,
-			responseHeaders,
-
-			// timeout handle
-			timeoutTimer,
-
-			// Url cleanup var
-			urlAnchor,
-
-			// Request state (becomes false upon send and true upon completion)
-			completed,
-
-			// To know if global events are to be dispatched
-			fireGlobals,
-
-			// Loop variable
-			i,
-
-			// uncached part of the url
-			uncached,
-
-			// Create the final options object
-			s = jQuery.ajaxSetup( {}, options ),
-
-			// Callbacks context
-			callbackContext = s.context || s,
-
-			// Context for global events is callbackContext if it is a DOM node or jQuery collection
-			globalEventContext = s.context &&
-				( callbackContext.nodeType || callbackContext.jquery ) ?
-				jQuery( callbackContext ) :
-				jQuery.event,
-
-			// Deferreds
-			deferred = jQuery.Deferred(),
-			completeDeferred = jQuery.Callbacks( "once memory" ),
-
-			// Status-dependent callbacks
-			statusCode = s.statusCode || {},
-
-			// Headers (they are sent all at once)
-			requestHeaders = {},
-			requestHeadersNames = {},
-
-			// Default abort message
-			strAbort = "canceled",
-
-			// Fake xhr
-			jqXHR = {
-				readyState: 0,
-
-				// Builds headers hashtable if needed
-				getResponseHeader: function( key ) {
-					var match;
-					if ( completed ) {
-						if ( !responseHeaders ) {
-							responseHeaders = {};
-							while ( ( match = rheaders.exec( responseHeadersString ) ) ) {
-								responseHeaders[ match[ 1 ].toLowerCase() + " " ] =
-									( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] )
-										.concat( match[ 2 ] );
-							}
-						}
-						match = responseHeaders[ key.toLowerCase() + " " ];
-					}
-					return match == null ? null : match.join( ", " );
-				},
-
-				// Raw string
-				getAllResponseHeaders: function() {
-					return completed ? responseHeadersString : null;
-				},
-
-				// Caches the header
-				setRequestHeader: function( name, value ) {
-					if ( completed == null ) {
-						name = requestHeadersNames[ name.toLowerCase() ] =
-							requestHeadersNames[ name.toLowerCase() ] || name;
-						requestHeaders[ name ] = value;
-					}
-					return this;
-				},
-
-				// Overrides response content-type header
-				overrideMimeType: function( type ) {
-					if ( completed == null ) {
-						s.mimeType = type;
-					}
-					return this;
-				},
-
-				// Status-dependent callbacks
-				statusCode: function( map ) {
-					var code;
-					if ( map ) {
-						if ( completed ) {
-
-							// Execute the appropriate callbacks
-							jqXHR.always( map[ jqXHR.status ] );
-						} else {
-
-							// Lazy-add the new callbacks in a way that preserves old ones
-							for ( code in map ) {
-								statusCode[ code ] = [ statusCode[ code ], map[ code ] ];
-							}
-						}
-					}
-					return this;
-				},
-
-				// Cancel the request
-				abort: function( statusText ) {
-					var finalText = statusText || strAbort;
-					if ( transport ) {
-						transport.abort( finalText );
-					}
-					done( 0, finalText );
-					return this;
-				}
-			};
-
-		// Attach deferreds
-		deferred.promise( jqXHR );
-
-		// Add protocol if not provided (prefilters might expect it)
-		// Handle falsy url in the settings object (#10093: consistency with old signature)
-		// We also use the url parameter if available
-		s.url = ( ( url || s.url || location.href ) + "" )
-			.replace( rprotocol, location.protocol + "//" );
-
-		// Alias method option to type as per ticket #12004
-		s.type = options.method || options.type || s.method || s.type;
-
-		// Extract dataTypes list
-		s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ];
-
-		// A cross-domain request is in order when the origin doesn't match the current origin.
-		if ( s.crossDomain == null ) {
-			urlAnchor = document.createElement( "a" );
-
-			// Support: IE <=8 - 11, Edge 12 - 15
-			// IE throws exception on accessing the href property if url is malformed,
-			// e.g. http://example.com:80x/
-			try {
-				urlAnchor.href = s.url;
-
-				// Support: IE <=8 - 11 only
-				// Anchor's host property isn't correctly set when s.url is relative
-				urlAnchor.href = urlAnchor.href;
-				s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !==
-					urlAnchor.protocol + "//" + urlAnchor.host;
-			} catch ( e ) {
-
-				// If there is an error parsing the URL, assume it is crossDomain,
-				// it can be rejected by the transport if it is invalid
-				s.crossDomain = true;
-			}
-		}
-
-		// Convert data if not already a string
-		if ( s.data && s.processData && typeof s.data !== "string" ) {
-			s.data = jQuery.param( s.data, s.traditional );
-		}
-
-		// Apply prefilters
-		inspectPrefiltersOrTransports( prefilters, s, options, jqXHR );
-
-		// If request was aborted inside a prefilter, stop there
-		if ( completed ) {
-			return jqXHR;
-		}
-
-		// We can fire global events as of now if asked to
-		// Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118)
-		fireGlobals = jQuery.event && s.global;
-
-		// Watch for a new set of requests
-		if ( fireGlobals && jQuery.active++ === 0 ) {
-			jQuery.event.trigger( "ajaxStart" );
-		}
-
-		// Uppercase the type
-		s.type = s.type.toUpperCase();
-
-		// Determine if request has content
-		s.hasContent = !rnoContent.test( s.type );
-
-		// Save the URL in case we're toying with the If-Modified-Since
-		// and/or If-None-Match header later on
-		// Remove hash to simplify url manipulation
-		cacheURL = s.url.replace( rhash, "" );
-
-		// More options handling for requests with no content
-		if ( !s.hasContent ) {
-
-			// Remember the hash so we can put it back
-			uncached = s.url.slice( cacheURL.length );
-
-			// If data is available and should be processed, append data to url
-			if ( s.data && ( s.processData || typeof s.data === "string" ) ) {
-				cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data;
-
-				// #9682: remove data so that it's not used in an eventual retry
-				delete s.data;
-			}
-
-			// Add or update anti-cache param if needed
-			if ( s.cache === false ) {
-				cacheURL = cacheURL.replace( rantiCache, "$1" );
-				uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) +
-					uncached;
-			}
-
-			// Put hash and anti-cache on the URL that will be requested (gh-1732)
-			s.url = cacheURL + uncached;
-
-		// Change '%20' to '+' if this is encoded form body content (gh-2658)
-		} else if ( s.data && s.processData &&
-			( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) {
-			s.data = s.data.replace( r20, "+" );
-		}
-
-		// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-		if ( s.ifModified ) {
-			if ( jQuery.lastModified[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] );
-			}
-			if ( jQuery.etag[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] );
-			}
-		}
-
-		// Set the correct header, if data is being sent
-		if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) {
-			jqXHR.setRequestHeader( "Content-Type", s.contentType );
-		}
-
-		// Set the Accepts header for the server, depending on the dataType
-		jqXHR.setRequestHeader(
-			"Accept",
-			s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ?
-				s.accepts[ s.dataTypes[ 0 ] ] +
-					( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) :
-				s.accepts[ "*" ]
-		);
-
-		// Check for headers option
-		for ( i in s.headers ) {
-			jqXHR.setRequestHeader( i, s.headers[ i ] );
-		}
-
-		// Allow custom headers/mimetypes and early abort
-		if ( s.beforeSend &&
-			( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) {
-
-			// Abort if not done already and return
-			return jqXHR.abort();
-		}
-
-		// Aborting is no longer a cancellation
-		strAbort = "abort";
-
-		// Install callbacks on deferreds
-		completeDeferred.add( s.complete );
-		jqXHR.done( s.success );
-		jqXHR.fail( s.error );
-
-		// Get transport
-		transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR );
-
-		// If no transport, we auto-abort
-		if ( !transport ) {
-			done( -1, "No Transport" );
-		} else {
-			jqXHR.readyState = 1;
-
-			// Send global event
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] );
-			}
-
-			// If request was aborted inside ajaxSend, stop there
-			if ( completed ) {
-				return jqXHR;
-			}
-
-			// Timeout
-			if ( s.async && s.timeout > 0 ) {
-				timeoutTimer = window.setTimeout( function() {
-					jqXHR.abort( "timeout" );
-				}, s.timeout );
-			}
-
-			try {
-				completed = false;
-				transport.send( requestHeaders, done );
-			} catch ( e ) {
-
-				// Rethrow post-completion exceptions
-				if ( completed ) {
-					throw e;
-				}
-
-				// Propagate others as results
-				done( -1, e );
-			}
-		}
-
-		// Callback for when everything is done
-		function done( status, nativeStatusText, responses, headers ) {
-			var isSuccess, success, error, response, modified,
-				statusText = nativeStatusText;
-
-			// Ignore repeat invocations
-			if ( completed ) {
-				return;
-			}
-
-			completed = true;
-
-			// Clear timeout if it exists
-			if ( timeoutTimer ) {
-				window.clearTimeout( timeoutTimer );
-			}
-
-			// Dereference transport for early garbage collection
-			// (no matter how long the jqXHR object will be used)
-			transport = undefined;
-
-			// Cache response headers
-			responseHeadersString = headers || "";
-
-			// Set readyState
-			jqXHR.readyState = status > 0 ? 4 : 0;
-
-			// Determine if successful
-			isSuccess = status >= 200 && status < 300 || status === 304;
-
-			// Get response data
-			if ( responses ) {
-				response = ajaxHandleResponses( s, jqXHR, responses );
-			}
-
-			// Use a noop converter for missing script but not if jsonp
-			if ( !isSuccess &&
-				jQuery.inArray( "script", s.dataTypes ) > -1 &&
-				jQuery.inArray( "json", s.dataTypes ) < 0 ) {
-				s.converters[ "text script" ] = function() {};
-			}
-
-			// Convert no matter what (that way responseXXX fields are always set)
-			response = ajaxConvert( s, response, jqXHR, isSuccess );
-
-			// If successful, handle type chaining
-			if ( isSuccess ) {
-
-				// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-				if ( s.ifModified ) {
-					modified = jqXHR.getResponseHeader( "Last-Modified" );
-					if ( modified ) {
-						jQuery.lastModified[ cacheURL ] = modified;
-					}
-					modified = jqXHR.getResponseHeader( "etag" );
-					if ( modified ) {
-						jQuery.etag[ cacheURL ] = modified;
-					}
-				}
-
-				// if no content
-				if ( status === 204 || s.type === "HEAD" ) {
-					statusText = "nocontent";
-
-				// if not modified
-				} else if ( status === 304 ) {
-					statusText = "notmodified";
-
-				// If we have data, let's convert it
-				} else {
-					statusText = response.state;
-					success = response.data;
-					error = response.error;
-					isSuccess = !error;
-				}
-			} else {
-
-				// Extract error from statusText and normalize for non-aborts
-				error = statusText;
-				if ( status || !statusText ) {
-					statusText = "error";
-					if ( status < 0 ) {
-						status = 0;
-					}
-				}
-			}
-
-			// Set data for the fake xhr object
-			jqXHR.status = status;
-			jqXHR.statusText = ( nativeStatusText || statusText ) + "";
-
-			// Success/Error
-			if ( isSuccess ) {
-				deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] );
-			} else {
-				deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] );
-			}
-
-			// Status-dependent callbacks
-			jqXHR.statusCode( statusCode );
-			statusCode = undefined;
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError",
-					[ jqXHR, s, isSuccess ? success : error ] );
-			}
-
-			// Complete
-			completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] );
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] );
-
-				// Handle the global AJAX counter
-				if ( !( --jQuery.active ) ) {
-					jQuery.event.trigger( "ajaxStop" );
-				}
-			}
-		}
-
-		return jqXHR;
-	},
-
-	getJSON: function( url, data, callback ) {
-		return jQuery.get( url, data, callback, "json" );
-	},
-
-	getScript: function( url, callback ) {
-		return jQuery.get( url, undefined, callback, "script" );
-	}
-} );
-
-jQuery.each( [ "get", "post" ], function( _i, method ) {
-	jQuery[ method ] = function( url, data, callback, type ) {
-
-		// Shift arguments if data argument was omitted
-		if ( isFunction( data ) ) {
-			type = type || callback;
-			callback = data;
-			data = undefined;
-		}
-
-		// The url can be an options object (which then must have .url)
-		return jQuery.ajax( jQuery.extend( {
-			url: url,
-			type: method,
-			dataType: type,
-			data: data,
-			success: callback
-		}, jQuery.isPlainObject( url ) && url ) );
-	};
-} );
-
-jQuery.ajaxPrefilter( function( s ) {
-	var i;
-	for ( i in s.headers ) {
-		if ( i.toLowerCase() === "content-type" ) {
-			s.contentType = s.headers[ i ] || "";
-		}
-	}
-} );
-
-
-jQuery._evalUrl = function( url, options, doc ) {
-	return jQuery.ajax( {
-		url: url,
-
-		// Make this explicit, since user can override this through ajaxSetup (#11264)
-		type: "GET",
-		dataType: "script",
-		cache: true,
-		async: false,
-		global: false,
-
-		// Only evaluate the response if it is successful (gh-4126)
-		// dataFilter is not invoked for failure responses, so using it instead
-		// of the default converter is kludgy but it works.
-		converters: {
-			"text script": function() {}
-		},
-		dataFilter: function( response ) {
-			jQuery.globalEval( response, options, doc );
-		}
-	} );
-};
-
-
-jQuery.fn.extend( {
-	wrapAll: function( html ) {
-		var wrap;
-
-		if ( this[ 0 ] ) {
-			if ( isFunction( html ) ) {
-				html = html.call( this[ 0 ] );
-			}
-
-			// The elements to wrap the target around
-			wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true );
-
-			if ( this[ 0 ].parentNode ) {
-				wrap.insertBefore( this[ 0 ] );
-			}
-
-			wrap.map( function() {
-				var elem = this;
-
-				while ( elem.firstElementChild ) {
-					elem = elem.firstElementChild;
-				}
-
-				return elem;
-			} ).append( this );
-		}
-
-		return this;
-	},
-
-	wrapInner: function( html ) {
-		if ( isFunction( html ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).wrapInner( html.call( this, i ) );
-			} );
-		}
-
-		return this.each( function() {
-			var self = jQuery( this ),
-				contents = self.contents();
-
-			if ( contents.length ) {
-				contents.wrapAll( html );
-
-			} else {
-				self.append( html );
-			}
-		} );
-	},
-
-	wrap: function( html ) {
-		var htmlIsFunction = isFunction( html );
-
-		return this.each( function( i ) {
-			jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html );
-		} );
-	},
-
-	unwrap: function( selector ) {
-		this.parent( selector ).not( "body" ).each( function() {
-			jQuery( this ).replaceWith( this.childNodes );
-		} );
-		return this;
-	}
-} );
-
-
-jQuery.expr.pseudos.hidden = function( elem ) {
-	return !jQuery.expr.pseudos.visible( elem );
-};
-jQuery.expr.pseudos.visible = function( elem ) {
-	return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length );
-};
-
-
-
-
-jQuery.ajaxSettings.xhr = function() {
-	try {
-		return new window.XMLHttpRequest();
-	} catch ( e ) {}
-};
-
-var xhrSuccessStatus = {
-
-		// File protocol always yields status code 0, assume 200
-		0: 200,
-
-		// Support: IE <=9 only
-		// #1450: sometimes IE returns 1223 when it should be 204
-		1223: 204
-	},
-	xhrSupported = jQuery.ajaxSettings.xhr();
-
-support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported );
-support.ajax = xhrSupported = !!xhrSupported;
-
-jQuery.ajaxTransport( function( options ) {
-	var callback, errorCallback;
-
-	// Cross domain only allowed if supported through XMLHttpRequest
-	if ( support.cors || xhrSupported && !options.crossDomain ) {
-		return {
-			send: function( headers, complete ) {
-				var i,
-					xhr = options.xhr();
-
-				xhr.open(
-					options.type,
-					options.url,
-					options.async,
-					options.username,
-					options.password
-				);
-
-				// Apply custom fields if provided
-				if ( options.xhrFields ) {
-					for ( i in options.xhrFields ) {
-						xhr[ i ] = options.xhrFields[ i ];
-					}
-				}
-
-				// Override mime type if needed
-				if ( options.mimeType && xhr.overrideMimeType ) {
-					xhr.overrideMimeType( options.mimeType );
-				}
-
-				// X-Requested-With header
-				// For cross-domain requests, seeing as conditions for a preflight are
-				// akin to a jigsaw puzzle, we simply never set it to be sure.
-				// (it can always be set on a per-request basis or even using ajaxSetup)
-				// For same-domain requests, won't change header if already provided.
-				if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) {
-					headers[ "X-Requested-With" ] = "XMLHttpRequest";
-				}
-
-				// Set headers
-				for ( i in headers ) {
-					xhr.setRequestHeader( i, headers[ i ] );
-				}
-
-				// Callback
-				callback = function( type ) {
-					return function() {
-						if ( callback ) {
-							callback = errorCallback = xhr.onload =
-								xhr.onerror = xhr.onabort = xhr.ontimeout =
-									xhr.onreadystatechange = null;
-
-							if ( type === "abort" ) {
-								xhr.abort();
-							} else if ( type === "error" ) {
-
-								// Support: IE <=9 only
-								// On a manual native abort, IE9 throws
-								// errors on any property access that is not readyState
-								if ( typeof xhr.status !== "number" ) {
-									complete( 0, "error" );
-								} else {
-									complete(
-
-										// File: protocol always yields status 0; see #8605, #14207
-										xhr.status,
-										xhr.statusText
-									);
-								}
-							} else {
-								complete(
-									xhrSuccessStatus[ xhr.status ] || xhr.status,
-									xhr.statusText,
-
-									// Support: IE <=9 only
-									// IE9 has no XHR2 but throws on binary (trac-11426)
-									// For XHR2 non-text, let the caller handle it (gh-2498)
-									( xhr.responseType || "text" ) !== "text"  ||
-									typeof xhr.responseText !== "string" ?
-										{ binary: xhr.response } :
-										{ text: xhr.responseText },
-									xhr.getAllResponseHeaders()
-								);
-							}
-						}
-					};
-				};
-
-				// Listen to events
-				xhr.onload = callback();
-				errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" );
-
-				// Support: IE 9 only
-				// Use onreadystatechange to replace onabort
-				// to handle uncaught aborts
-				if ( xhr.onabort !== undefined ) {
-					xhr.onabort = errorCallback;
-				} else {
-					xhr.onreadystatechange = function() {
-
-						// Check readyState before timeout as it changes
-						if ( xhr.readyState === 4 ) {
-
-							// Allow onerror to be called first,
-							// but that will not handle a native abort
-							// Also, save errorCallback to a variable
-							// as xhr.onerror cannot be accessed
-							window.setTimeout( function() {
-								if ( callback ) {
-									errorCallback();
-								}
-							} );
-						}
-					};
-				}
-
-				// Create the abort callback
-				callback = callback( "abort" );
-
-				try {
-
-					// Do send the request (this may raise an exception)
-					xhr.send( options.hasContent && options.data || null );
-				} catch ( e ) {
-
-					// #14683: Only rethrow if this hasn't been notified as an error yet
-					if ( callback ) {
-						throw e;
-					}
-				}
-			},
-
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432)
-jQuery.ajaxPrefilter( function( s ) {
-	if ( s.crossDomain ) {
-		s.contents.script = false;
-	}
-} );
-
-// Install script dataType
-jQuery.ajaxSetup( {
-	accepts: {
-		script: "text/javascript, application/javascript, " +
-			"application/ecmascript, application/x-ecmascript"
-	},
-	contents: {
-		script: /\b(?:java|ecma)script\b/
-	},
-	converters: {
-		"text script": function( text ) {
-			jQuery.globalEval( text );
-			return text;
-		}
-	}
-} );
-
-// Handle cache's special case and crossDomain
-jQuery.ajaxPrefilter( "script", function( s ) {
-	if ( s.cache === undefined ) {
-		s.cache = false;
-	}
-	if ( s.crossDomain ) {
-		s.type = "GET";
-	}
-} );
-
-// Bind script tag hack transport
-jQuery.ajaxTransport( "script", function( s ) {
-
-	// This transport only deals with cross domain or forced-by-attrs requests
-	if ( s.crossDomain || s.scriptAttrs ) {
-		var script, callback;
-		return {
-			send: function( _, complete ) {
-				script = jQuery( "<script>" )
-					.attr( s.scriptAttrs || {} )
-					.prop( { charset: s.scriptCharset, src: s.url } )
-					.on( "load error", callback = function( evt ) {
-						script.remove();
-						callback = null;
-						if ( evt ) {
-							complete( evt.type === "error" ? 404 : 200, evt.type );
-						}
-					} );
-
-				// Use native DOM manipulation to avoid our domManip AJAX trickery
-				document.head.appendChild( script[ 0 ] );
-			},
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-var oldCallbacks = [],
-	rjsonp = /(=)\?(?=&|$)|\?\?/;
-
-// Default jsonp settings
-jQuery.ajaxSetup( {
-	jsonp: "callback",
-	jsonpCallback: function() {
-		var callback = oldCallbacks.pop() || ( jQuery.expando + "_" + ( nonce.guid++ ) );
-		this[ callback ] = true;
-		return callback;
-	}
-} );
-
-// Detect, normalize options and install callbacks for jsonp requests
-jQuery.ajaxPrefilter( "json jsonp", function( s, originalSettings, jqXHR ) {
-
-	var callbackName, overwritten, responseContainer,
-		jsonProp = s.jsonp !== false && ( rjsonp.test( s.url ) ?
-			"url" :
-			typeof s.data === "string" &&
-				( s.contentType || "" )
-					.indexOf( "application/x-www-form-urlencoded" ) === 0 &&
-				rjsonp.test( s.data ) && "data"
-		);
-
-	// Handle iff the expected data type is "jsonp" or we have a parameter to set
-	if ( jsonProp || s.dataTypes[ 0 ] === "jsonp" ) {
-
-		// Get callback name, remembering preexisting value associated with it
-		callbackName = s.jsonpCallback = isFunction( s.jsonpCallback ) ?
-			s.jsonpCallback() :
-			s.jsonpCallback;
-
-		// Insert callback into url or form data
-		if ( jsonProp ) {
-			s[ jsonProp ] = s[ jsonProp ].replace( rjsonp, "$1" + callbackName );
-		} else if ( s.jsonp !== false ) {
-			s.url += ( rquery.test( s.url ) ? "&" : "?" ) + s.jsonp + "=" + callbackName;
-		}
-
-		// Use data converter to retrieve json after script execution
-		s.converters[ "script json" ] = function() {
-			if ( !responseContainer ) {
-				jQuery.error( callbackName + " was not called" );
-			}
-			return responseContainer[ 0 ];
-		};
-
-		// Force json dataType
-		s.dataTypes[ 0 ] = "json";
-
-		// Install callback
-		overwritten = window[ callbackName ];
-		window[ callbackName ] = function() {
-			responseContainer = arguments;
-		};
-
-		// Clean-up function (fires after converters)
-		jqXHR.always( function() {
-
-			// If previous value didn't exist - remove it
-			if ( overwritten === undefined ) {
-				jQuery( window ).removeProp( callbackName );
-
-			// Otherwise restore preexisting value
-			} else {
-				window[ callbackName ] = overwritten;
-			}
-
-			// Save back as free
-			if ( s[ callbackName ] ) {
-
-				// Make sure that re-using the options doesn't screw things around
-				s.jsonpCallback = originalSettings.jsonpCallback;
-
-				// Save the callback name for future use
-				oldCallbacks.push( callbackName );
-			}
-
-			// Call if it was a function and we have a response
-			if ( responseContainer && isFunction( overwritten ) ) {
-				overwritten( responseContainer[ 0 ] );
-			}
-
-			responseContainer = overwritten = undefined;
-		} );
-
-		// Delegate to script
-		return "script";
-	}
-} );
-
-
-
-
-// Support: Safari 8 only
-// In Safari 8 documents created via document.implementation.createHTMLDocument
-// collapse sibling forms: the second one becomes a child of the first one.
-// Because of that, this security measure has to be disabled in Safari 8.
-// https://bugs.webkit.org/show_bug.cgi?id=137337
-support.createHTMLDocument = ( function() {
-	var body = document.implementation.createHTMLDocument( "" ).body;
-	body.innerHTML = "<form></form><form></form>";
-	return body.childNodes.length === 2;
-} )();
-
-
-// Argument "data" should be string of html
-// context (optional): If specified, the fragment will be created in this context,
-// defaults to document
-// keepScripts (optional): If true, will include scripts passed in the html string
-jQuery.parseHTML = function( data, context, keepScripts ) {
-	if ( typeof data !== "string" ) {
-		return [];
-	}
-	if ( typeof context === "boolean" ) {
-		keepScripts = context;
-		context = false;
-	}
-
-	var base, parsed, scripts;
-
-	if ( !context ) {
-
-		// Stop scripts or inline event handlers from being executed immediately
-		// by using document.implementation
-		if ( support.createHTMLDocument ) {
-			context = document.implementation.createHTMLDocument( "" );
-
-			// Set the base href for the created document
-			// so any parsed elements with URLs
-			// are based on the document's URL (gh-2965)
-			base = context.createElement( "base" );
-			base.href = document.location.href;
-			context.head.appendChild( base );
-		} else {
-			context = document;
-		}
-	}
-
-	parsed = rsingleTag.exec( data );
-	scripts = !keepScripts && [];
-
-	// Single tag
-	if ( parsed ) {
-		return [ context.createElement( parsed[ 1 ] ) ];
-	}
-
-	parsed = buildFragment( [ data ], context, scripts );
-
-	if ( scripts && scripts.length ) {
-		jQuery( scripts ).remove();
-	}
-
-	return jQuery.merge( [], parsed.childNodes );
-};
-
-
-/**
- * Load a url into a page
- */
-jQuery.fn.load = function( url, params, callback ) {
-	var selector, type, response,
-		self = this,
-		off = url.indexOf( " " );
-
-	if ( off > -1 ) {
-		selector = stripAndCollapse( url.slice( off ) );
-		url = url.slice( 0, off );
-	}
-
-	// If it's a function
-	if ( isFunction( params ) ) {
-
-		// We assume that it's the callback
-		callback = params;
-		params = undefined;
-
-	// Otherwise, build a param string
-	} else if ( params && typeof params === "object" ) {
-		type = "POST";
-	}
-
-	// If we have elements to modify, make the request
-	if ( self.length > 0 ) {
-		jQuery.ajax( {
-			url: url,
-
-			// If "type" variable is undefined, then "GET" method will be used.
-			// Make value of this field explicit since
-			// user can override it through ajaxSetup method
-			type: type || "GET",
-			dataType: "html",
-			data: params
-		} ).done( function( responseText ) {
-
-			// Save response for use in complete callback
-			response = arguments;
-
-			self.html( selector ?
-
-				// If a selector was specified, locate the right elements in a dummy div
-				// Exclude scripts to avoid IE 'Permission Denied' errors
-				jQuery( "<div>" ).append( jQuery.parseHTML( responseText ) ).find( selector ) :
-
-				// Otherwise use the full result
-				responseText );
-
-		// If the request succeeds, this function gets "data", "status", "jqXHR"
-		// but they are ignored because response was set above.
-		// If it fails, this function gets "jqXHR", "status", "error"
-		} ).always( callback && function( jqXHR, status ) {
-			self.each( function() {
-				callback.apply( this, response || [ jqXHR.responseText, status, jqXHR ] );
-			} );
-		} );
-	}
-
-	return this;
-};
-
-
-
-
-jQuery.expr.pseudos.animated = function( elem ) {
-	return jQuery.grep( jQuery.timers, function( fn ) {
-		return elem === fn.elem;
-	} ).length;
-};
-
-
-
-
-jQuery.offset = {
-	setOffset: function( elem, options, i ) {
-		var curPosition, curLeft, curCSSTop, curTop, curOffset, curCSSLeft, calculatePosition,
-			position = jQuery.css( elem, "position" ),
-			curElem = jQuery( elem ),
-			props = {};
-
-		// Set position first, in-case top/left are set even on static elem
-		if ( position === "static" ) {
-			elem.style.position = "relative";
-		}
-
-		curOffset = curElem.offset();
-		curCSSTop = jQuery.css( elem, "top" );
-		curCSSLeft = jQuery.css( elem, "left" );
-		calculatePosition = ( position === "absolute" || position === "fixed" ) &&
-			( curCSSTop + curCSSLeft ).indexOf( "auto" ) > -1;
-
-		// Need to be able to calculate position if either
-		// top or left is auto and position is either absolute or fixed
-		if ( calculatePosition ) {
-			curPosition = curElem.position();
-			curTop = curPosition.top;
-			curLeft = curPosition.left;
-
-		} else {
-			curTop = parseFloat( curCSSTop ) || 0;
-			curLeft = parseFloat( curCSSLeft ) || 0;
-		}
-
-		if ( isFunction( options ) ) {
-
-			// Use jQuery.extend here to allow modification of coordinates argument (gh-1848)
-			options = options.call( elem, i, jQuery.extend( {}, curOffset ) );
-		}
-
-		if ( options.top != null ) {
-			props.top = ( options.top - curOffset.top ) + curTop;
-		}
-		if ( options.left != null ) {
-			props.left = ( options.left - curOffset.left ) + curLeft;
-		}
-
-		if ( "using" in options ) {
-			options.using.call( elem, props );
-
-		} else {
-			curElem.css( props );
-		}
-	}
-};
-
-jQuery.fn.extend( {
-
-	// offset() relates an element's border box to the document origin
-	offset: function( options ) {
-
-		// Preserve chaining for setter
-		if ( arguments.length ) {
-			return options === undefined ?
-				this :
-				this.each( function( i ) {
-					jQuery.offset.setOffset( this, options, i );
-				} );
-		}
-
-		var rect, win,
-			elem = this[ 0 ];
-
-		if ( !elem ) {
-			return;
-		}
-
-		// Return zeros for disconnected and hidden (display: none) elements (gh-2310)
-		// Support: IE <=11 only
-		// Running getBoundingClientRect on a
-		// disconnected node in IE throws an error
-		if ( !elem.getClientRects().length ) {
-			return { top: 0, left: 0 };
-		}
-
-		// Get document-relative position by adding viewport scroll to viewport-relative gBCR
-		rect = elem.getBoundingClientRect();
-		win = elem.ownerDocument.defaultView;
-		return {
-			top: rect.top + win.pageYOffset,
-			left: rect.left + win.pageXOffset
-		};
-	},
-
-	// position() relates an element's margin box to its offset parent's padding box
-	// This corresponds to the behavior of CSS absolute positioning
-	position: function() {
-		if ( !this[ 0 ] ) {
-			return;
-		}
-
-		var offsetParent, offset, doc,
-			elem = this[ 0 ],
-			parentOffset = { top: 0, left: 0 };
-
-		// position:fixed elements are offset from the viewport, which itself always has zero offset
-		if ( jQuery.css( elem, "position" ) === "fixed" ) {
-
-			// Assume position:fixed implies availability of getBoundingClientRect
-			offset = elem.getBoundingClientRect();
-
-		} else {
-			offset = this.offset();
-
-			// Account for the *real* offset parent, which can be the document or its root element
-			// when a statically positioned element is identified
-			doc = elem.ownerDocument;
-			offsetParent = elem.offsetParent || doc.documentElement;
-			while ( offsetParent &&
-				( offsetParent === doc.body || offsetParent === doc.documentElement ) &&
-				jQuery.css( offsetParent, "position" ) === "static" ) {
-
-				offsetParent = offsetParent.parentNode;
-			}
-			if ( offsetParent && offsetParent !== elem && offsetParent.nodeType === 1 ) {
-
-				// Incorporate borders into its offset, since they are outside its content origin
-				parentOffset = jQuery( offsetParent ).offset();
-				parentOffset.top += jQuery.css( offsetParent, "borderTopWidth", true );
-				parentOffset.left += jQuery.css( offsetParent, "borderLeftWidth", true );
-			}
-		}
-
-		// Subtract parent offsets and element margins
-		return {
-			top: offset.top - parentOffset.top - jQuery.css( elem, "marginTop", true ),
-			left: offset.left - parentOffset.left - jQuery.css( elem, "marginLeft", true )
-		};
-	},
-
-	// This method will return documentElement in the following cases:
-	// 1) For the element inside the iframe without offsetParent, this method will return
-	//    documentElement of the parent window
-	// 2) For the hidden or detached element
-	// 3) For body or html element, i.e. in case of the html node - it will return itself
-	//
-	// but those exceptions were never presented as a real life use-cases
-	// and might be considered as more preferable results.
-	//
-	// This logic, however, is not guaranteed and can change at any point in the future
-	offsetParent: function() {
-		return this.map( function() {
-			var offsetParent = this.offsetParent;
-
-			while ( offsetParent && jQuery.css( offsetParent, "position" ) === "static" ) {
-				offsetParent = offsetParent.offsetParent;
-			}
-
-			return offsetParent || documentElement;
-		} );
-	}
-} );
-
-// Create scrollLeft and scrollTop methods
-jQuery.each( { scrollLeft: "pageXOffset", scrollTop: "pageYOffset" }, function( method, prop ) {
-	var top = "pageYOffset" === prop;
-
-	jQuery.fn[ method ] = function( val ) {
-		return access( this, function( elem, method, val ) {
-
-			// Coalesce documents and windows
-			var win;
-			if ( isWindow( elem ) ) {
-				win = elem;
-			} else if ( elem.nodeType === 9 ) {
-				win = elem.defaultView;
-			}
-
-			if ( val === undefined ) {
-				return win ? win[ prop ] : elem[ method ];
-			}
-
-			if ( win ) {
-				win.scrollTo(
-					!top ? val : win.pageXOffset,
-					top ? val : win.pageYOffset
-				);
-
-			} else {
-				elem[ method ] = val;
-			}
-		}, method, val, arguments.length );
-	};
-} );
-
-// Support: Safari <=7 - 9.1, Chrome <=37 - 49
-// Add the top/left cssHooks using jQuery.fn.position
-// Webkit bug: https://bugs.webkit.org/show_bug.cgi?id=29084
-// Blink bug: https://bugs.chromium.org/p/chromium/issues/detail?id=589347
-// getComputedStyle returns percent when specified for top/left/bottom/right;
-// rather than make the css module depend on the offset module, just check for it here
-jQuery.each( [ "top", "left" ], function( _i, prop ) {
-	jQuery.cssHooks[ prop ] = addGetHookIf( support.pixelPosition,
-		function( elem, computed ) {
-			if ( computed ) {
-				computed = curCSS( elem, prop );
-
-				// If curCSS returns percentage, fallback to offset
-				return rnumnonpx.test( computed ) ?
-					jQuery( elem ).position()[ prop ] + "px" :
-					computed;
-			}
-		}
-	);
-} );
-
-
-// Create innerHeight, innerWidth, height, width, outerHeight and outerWidth methods
-jQuery.each( { Height: "height", Width: "width" }, function( name, type ) {
-	jQuery.each( {
-		padding: "inner" + name,
-		content: type,
-		"": "outer" + name
-	}, function( defaultExtra, funcName ) {
-
-		// Margin is only for outerHeight, outerWidth
-		jQuery.fn[ funcName ] = function( margin, value ) {
-			var chainable = arguments.length && ( defaultExtra || typeof margin !== "boolean" ),
-				extra = defaultExtra || ( margin === true || value === true ? "margin" : "border" );
-
-			return access( this, function( elem, type, value ) {
-				var doc;
-
-				if ( isWindow( elem ) ) {
-
-					// $( window ).outerWidth/Height return w/h including scrollbars (gh-1729)
-					return funcName.indexOf( "outer" ) === 0 ?
-						elem[ "inner" + name ] :
-						elem.document.documentElement[ "client" + name ];
-				}
-
-				// Get document width or height
-				if ( elem.nodeType === 9 ) {
-					doc = elem.documentElement;
-
-					// Either scroll[Width/Height] or offset[Width/Height] or client[Width/Height],
-					// whichever is greatest
-					return Math.max(
-						elem.body[ "scroll" + name ], doc[ "scroll" + name ],
-						elem.body[ "offset" + name ], doc[ "offset" + name ],
-						doc[ "client" + name ]
-					);
-				}
-
-				return value === undefined ?
-
-					// Get width or height on the element, requesting but not forcing parseFloat
-					jQuery.css( elem, type, extra ) :
-
-					// Set width or height on the element
-					jQuery.style( elem, type, value, extra );
-			}, type, chainable ? margin : undefined, chainable );
-		};
-	} );
-} );
-
-
-jQuery.each( [
-	"ajaxStart",
-	"ajaxStop",
-	"ajaxComplete",
-	"ajaxError",
-	"ajaxSuccess",
-	"ajaxSend"
-], function( _i, type ) {
-	jQuery.fn[ type ] = function( fn ) {
-		return this.on( type, fn );
-	};
-} );
-
-
-
-
-jQuery.fn.extend( {
-
-	bind: function( types, data, fn ) {
-		return this.on( types, null, data, fn );
-	},
-	unbind: function( types, fn ) {
-		return this.off( types, null, fn );
-	},
-
-	delegate: function( selector, types, data, fn ) {
-		return this.on( types, selector, data, fn );
-	},
-	undelegate: function( selector, types, fn ) {
-
-		// ( namespace ) or ( selector, types [, fn] )
-		return arguments.length === 1 ?
-			this.off( selector, "**" ) :
-			this.off( types, selector || "**", fn );
-	},
-
-	hover: function( fnOver, fnOut ) {
-		return this.mouseenter( fnOver ).mouseleave( fnOut || fnOver );
-	}
-} );
-
-jQuery.each(
-	( "blur focus focusin focusout resize scroll click dblclick " +
-	"mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " +
-	"change select submit keydown keypress keyup contextmenu" ).split( " " ),
-	function( _i, name ) {
-
-		// Handle event binding
-		jQuery.fn[ name ] = function( data, fn ) {
-			return arguments.length > 0 ?
-				this.on( name, null, data, fn ) :
-				this.trigger( name );
-		};
-	}
-);
-
-
-
-
-// Support: Android <=4.0 only
-// Make sure we trim BOM and NBSP
-var rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g;
-
-// Bind a function to a context, optionally partially applying any
-// arguments.
-// jQuery.proxy is deprecated to promote standards (specifically Function#bind)
-// However, it is not slated for removal any time soon
-jQuery.proxy = function( fn, context ) {
-	var tmp, args, proxy;
-
-	if ( typeof context === "string" ) {
-		tmp = fn[ context ];
-		context = fn;
-		fn = tmp;
-	}
-
-	// Quick check to determine if target is callable, in the spec
-	// this throws a TypeError, but we will just return undefined.
-	if ( !isFunction( fn ) ) {
-		return undefined;
-	}
-
-	// Simulated bind
-	args = slice.call( arguments, 2 );
-	proxy = function() {
-		return fn.apply( context || this, args.concat( slice.call( arguments ) ) );
-	};
-
-	// Set the guid of unique handler to the same of original handler, so it can be removed
-	proxy.guid = fn.guid = fn.guid || jQuery.guid++;
-
-	return proxy;
-};
-
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diff --git a/v0.3.0/_static/jquery.js b/v0.3.0/_static/jquery.js
deleted file mode 100644
index c4c6022f2..000000000
--- a/v0.3.0/_static/jquery.js
+++ /dev/null
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index cd1c674f5..000000000
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diff --git a/v0.3.0/_static/language_data.js b/v0.3.0/_static/language_data.js
deleted file mode 100644
index 2e22b06ab..000000000
--- a/v0.3.0/_static/language_data.js
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-/*
- * language_data.js
- * ~~~~~~~~~~~~~~~~
- *
- * This script contains the language-specific data used by searchtools.js,
- * namely the list of stopwords, stemmer, scorer and splitter.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-
-var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
-
-
-/* Non-minified version is copied as a separate JS file, is available */
-
-/**
- * Porter Stemmer
- */
-var Stemmer = function() {
-
-  var step2list = {
-    ational: 'ate',
-    tional: 'tion',
-    enci: 'ence',
-    anci: 'ance',
-    izer: 'ize',
-    bli: 'ble',
-    alli: 'al',
-    entli: 'ent',
-    eli: 'e',
-    ousli: 'ous',
-    ization: 'ize',
-    ation: 'ate',
-    ator: 'ate',
-    alism: 'al',
-    iveness: 'ive',
-    fulness: 'ful',
-    ousness: 'ous',
-    aliti: 'al',
-    iviti: 'ive',
-    biliti: 'ble',
-    logi: 'log'
-  };
-
-  var step3list = {
-    icate: 'ic',
-    ative: '',
-    alize: 'al',
-    iciti: 'ic',
-    ical: 'ic',
-    ful: '',
-    ness: ''
-  };
-
-  var c = "[^aeiou]";          // consonant
-  var v = "[aeiouy]";          // vowel
-  var C = c + "[^aeiouy]*";    // consonant sequence
-  var V = v + "[aeiou]*";      // vowel sequence
-
-  var mgr0 = "^(" + C + ")?" + V + C;                      // [C]VC... is m>0
-  var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$";    // [C]VC[V] is m=1
-  var mgr1 = "^(" + C + ")?" + V + C + V + C;              // [C]VCVC... is m>1
-  var s_v   = "^(" + C + ")?" + v;                         // vowel in stem
-
-  this.stemWord = function (w) {
-    var stem;
-    var suffix;
-    var firstch;
-    var origword = w;
-
-    if (w.length < 3)
-      return w;
-
-    var re;
-    var re2;
-    var re3;
-    var re4;
-
-    firstch = w.substr(0,1);
-    if (firstch == "y")
-      w = firstch.toUpperCase() + w.substr(1);
-
-    // Step 1a
-    re = /^(.+?)(ss|i)es$/;
-    re2 = /^(.+?)([^s])s$/;
-
-    if (re.test(w))
-      w = w.replace(re,"$1$2");
-    else if (re2.test(w))
-      w = w.replace(re2,"$1$2");
-
-    // Step 1b
-    re = /^(.+?)eed$/;
-    re2 = /^(.+?)(ed|ing)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      re = new RegExp(mgr0);
-      if (re.test(fp[1])) {
-        re = /.$/;
-        w = w.replace(re,"");
-      }
-    }
-    else if (re2.test(w)) {
-      var fp = re2.exec(w);
-      stem = fp[1];
-      re2 = new RegExp(s_v);
-      if (re2.test(stem)) {
-        w = stem;
-        re2 = /(at|bl|iz)$/;
-        re3 = new RegExp("([^aeiouylsz])\\1$");
-        re4 = new RegExp("^" + C + v + "[^aeiouwxy]$");
-        if (re2.test(w))
-          w = w + "e";
-        else if (re3.test(w)) {
-          re = /.$/;
-          w = w.replace(re,"");
-        }
-        else if (re4.test(w))
-          w = w + "e";
-      }
-    }
-
-    // Step 1c
-    re = /^(.+?)y$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(s_v);
-      if (re.test(stem))
-        w = stem + "i";
-    }
-
-    // Step 2
-    re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      suffix = fp[2];
-      re = new RegExp(mgr0);
-      if (re.test(stem))
-        w = stem + step2list[suffix];
-    }
-
-    // Step 3
-    re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      suffix = fp[2];
-      re = new RegExp(mgr0);
-      if (re.test(stem))
-        w = stem + step3list[suffix];
-    }
-
-    // Step 4
-    re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/;
-    re2 = /^(.+?)(s|t)(ion)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(mgr1);
-      if (re.test(stem))
-        w = stem;
-    }
-    else if (re2.test(w)) {
-      var fp = re2.exec(w);
-      stem = fp[1] + fp[2];
-      re2 = new RegExp(mgr1);
-      if (re2.test(stem))
-        w = stem;
-    }
-
-    // Step 5
-    re = /^(.+?)e$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(mgr1);
-      re2 = new RegExp(meq1);
-      re3 = new RegExp("^" + C + v + "[^aeiouwxy]$");
-      if (re.test(stem) || (re2.test(stem) && !(re3.test(stem))))
-        w = stem;
-    }
-    re = /ll$/;
-    re2 = new RegExp(mgr1);
-    if (re.test(w) && re2.test(w)) {
-      re = /.$/;
-      w = w.replace(re,"");
-    }
-
-    // and turn initial Y back to y
-    if (firstch == "y")
-      w = firstch.toLowerCase() + w.substr(1);
-    return w;
-  }
-}
-
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index 691aeb82d..000000000
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-.highlight .err { border: 1px solid #FF0000 } /* Error */
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-.highlight .o { color: #666666 } /* Operator */
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diff --git a/v0.3.0/_static/searchtools.js b/v0.3.0/_static/searchtools.js
deleted file mode 100644
index e89e34d4e..000000000
--- a/v0.3.0/_static/searchtools.js
+++ /dev/null
@@ -1,566 +0,0 @@
-/*
- * searchtools.js
- * ~~~~~~~~~~~~~~~~
- *
- * Sphinx JavaScript utilities for the full-text search.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-"use strict";
-
-/**
- * Simple result scoring code.
- */
-if (typeof Scorer === "undefined") {
-  var Scorer = {
-    // Implement the following function to further tweak the score for each result
-    // The function takes a result array [docname, title, anchor, descr, score, filename]
-    // and returns the new score.
-    /*
-    score: result => {
-      const [docname, title, anchor, descr, score, filename] = result
-      return score
-    },
-    */
-
-    // query matches the full name of an object
-    objNameMatch: 11,
-    // or matches in the last dotted part of the object name
-    objPartialMatch: 6,
-    // Additive scores depending on the priority of the object
-    objPrio: {
-      0: 15, // used to be importantResults
-      1: 5, // used to be objectResults
-      2: -5, // used to be unimportantResults
-    },
-    //  Used when the priority is not in the mapping.
-    objPrioDefault: 0,
-
-    // query found in title
-    title: 15,
-    partialTitle: 7,
-    // query found in terms
-    term: 5,
-    partialTerm: 2,
-  };
-}
-
-const _removeChildren = (element) => {
-  while (element && element.lastChild) element.removeChild(element.lastChild);
-};
-
-/**
- * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping
- */
-const _escapeRegExp = (string) =>
-  string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string
-
-const _displayItem = (item, searchTerms) => {
-  const docBuilder = DOCUMENTATION_OPTIONS.BUILDER;
-  const docUrlRoot = DOCUMENTATION_OPTIONS.URL_ROOT;
-  const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX;
-  const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX;
-  const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
-
-  const [docName, title, anchor, descr, score, _filename] = item;
-
-  let listItem = document.createElement("li");
-  let requestUrl;
-  let linkUrl;
-  if (docBuilder === "dirhtml") {
-    // dirhtml builder
-    let dirname = docName + "/";
-    if (dirname.match(/\/index\/$/))
-      dirname = dirname.substring(0, dirname.length - 6);
-    else if (dirname === "index/") dirname = "";
-    requestUrl = docUrlRoot + dirname;
-    linkUrl = requestUrl;
-  } else {
-    // normal html builders
-    requestUrl = docUrlRoot + docName + docFileSuffix;
-    linkUrl = docName + docLinkSuffix;
-  }
-  let linkEl = listItem.appendChild(document.createElement("a"));
-  linkEl.href = linkUrl + anchor;
-  linkEl.dataset.score = score;
-  linkEl.innerHTML = title;
-  if (descr)
-    listItem.appendChild(document.createElement("span")).innerHTML =
-      " (" + descr + ")";
-  else if (showSearchSummary)
-    fetch(requestUrl)
-      .then((responseData) => responseData.text())
-      .then((data) => {
-        if (data)
-          listItem.appendChild(
-            Search.makeSearchSummary(data, searchTerms)
-          );
-      });
-  Search.output.appendChild(listItem);
-};
-const _finishSearch = (resultCount) => {
-  Search.stopPulse();
-  Search.title.innerText = _("Search Results");
-  if (!resultCount)
-    Search.status.innerText = Documentation.gettext(
-      "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
-    );
-  else
-    Search.status.innerText = _(
-      `Search finished, found ${resultCount} page(s) matching the search query.`
-    );
-};
-const _displayNextItem = (
-  results,
-  resultCount,
-  searchTerms
-) => {
-  // results left, load the summary and display it
-  // this is intended to be dynamic (don't sub resultsCount)
-  if (results.length) {
-    _displayItem(results.pop(), searchTerms);
-    setTimeout(
-      () => _displayNextItem(results, resultCount, searchTerms),
-      5
-    );
-  }
-  // search finished, update title and status message
-  else _finishSearch(resultCount);
-};
-
-/**
- * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
- * custom function per language.
- *
- * The regular expression works by splitting the string on consecutive characters
- * that are not Unicode letters, numbers, underscores, or emoji characters.
- * This is the same as ``\W+`` in Python, preserving the surrogate pair area.
- */
-if (typeof splitQuery === "undefined") {
-  var splitQuery = (query) => query
-      .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu)
-      .filter(term => term)  // remove remaining empty strings
-}
-
-/**
- * Search Module
- */
-const Search = {
-  _index: null,
-  _queued_query: null,
-  _pulse_status: -1,
-
-  htmlToText: (htmlString) => {
-    const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
-    htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() });
-    const docContent = htmlElement.querySelector('[role="main"]');
-    if (docContent !== undefined) return docContent.textContent;
-    console.warn(
-      "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template."
-    );
-    return "";
-  },
-
-  init: () => {
-    const query = new URLSearchParams(window.location.search).get("q");
-    document
-      .querySelectorAll('input[name="q"]')
-      .forEach((el) => (el.value = query));
-    if (query) Search.performSearch(query);
-  },
-
-  loadIndex: (url) =>
-    (document.body.appendChild(document.createElement("script")).src = url),
-
-  setIndex: (index) => {
-    Search._index = index;
-    if (Search._queued_query !== null) {
-      const query = Search._queued_query;
-      Search._queued_query = null;
-      Search.query(query);
-    }
-  },
-
-  hasIndex: () => Search._index !== null,
-
-  deferQuery: (query) => (Search._queued_query = query),
-
-  stopPulse: () => (Search._pulse_status = -1),
-
-  startPulse: () => {
-    if (Search._pulse_status >= 0) return;
-
-    const pulse = () => {
-      Search._pulse_status = (Search._pulse_status + 1) % 4;
-      Search.dots.innerText = ".".repeat(Search._pulse_status);
-      if (Search._pulse_status >= 0) window.setTimeout(pulse, 500);
-    };
-    pulse();
-  },
-
-  /**
-   * perform a search for something (or wait until index is loaded)
-   */
-  performSearch: (query) => {
-    // create the required interface elements
-    const searchText = document.createElement("h2");
-    searchText.textContent = _("Searching");
-    const searchSummary = document.createElement("p");
-    searchSummary.classList.add("search-summary");
-    searchSummary.innerText = "";
-    const searchList = document.createElement("ul");
-    searchList.classList.add("search");
-
-    const out = document.getElementById("search-results");
-    Search.title = out.appendChild(searchText);
-    Search.dots = Search.title.appendChild(document.createElement("span"));
-    Search.status = out.appendChild(searchSummary);
-    Search.output = out.appendChild(searchList);
-
-    const searchProgress = document.getElementById("search-progress");
-    // Some themes don't use the search progress node
-    if (searchProgress) {
-      searchProgress.innerText = _("Preparing search...");
-    }
-    Search.startPulse();
-
-    // index already loaded, the browser was quick!
-    if (Search.hasIndex()) Search.query(query);
-    else Search.deferQuery(query);
-  },
-
-  /**
-   * execute search (requires search index to be loaded)
-   */
-  query: (query) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-    const allTitles = Search._index.alltitles;
-    const indexEntries = Search._index.indexentries;
-
-    // stem the search terms and add them to the correct list
-    const stemmer = new Stemmer();
-    const searchTerms = new Set();
-    const excludedTerms = new Set();
-    const highlightTerms = new Set();
-    const objectTerms = new Set(splitQuery(query.toLowerCase().trim()));
-    splitQuery(query.trim()).forEach((queryTerm) => {
-      const queryTermLower = queryTerm.toLowerCase();
-
-      // maybe skip this "word"
-      // stopwords array is from language_data.js
-      if (
-        stopwords.indexOf(queryTermLower) !== -1 ||
-        queryTerm.match(/^\d+$/)
-      )
-        return;
-
-      // stem the word
-      let word = stemmer.stemWord(queryTermLower);
-      // select the correct list
-      if (word[0] === "-") excludedTerms.add(word.substr(1));
-      else {
-        searchTerms.add(word);
-        highlightTerms.add(queryTermLower);
-      }
-    });
-
-    if (SPHINX_HIGHLIGHT_ENABLED) {  // set in sphinx_highlight.js
-      localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" "))
-    }
-
-    // console.debug("SEARCH: searching for:");
-    // console.info("required: ", [...searchTerms]);
-    // console.info("excluded: ", [...excludedTerms]);
-
-    // array of [docname, title, anchor, descr, score, filename]
-    let results = [];
-    _removeChildren(document.getElementById("search-progress"));
-
-    const queryLower = query.toLowerCase();
-    for (const [title, foundTitles] of Object.entries(allTitles)) {
-      if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) {
-        for (const [file, id] of foundTitles) {
-          let score = Math.round(100 * queryLower.length / title.length)
-          results.push([
-            docNames[file],
-            titles[file] !== title ? `${titles[file]} > ${title}` : title,
-            id !== null ? "#" + id : "",
-            null,
-            score,
-            filenames[file],
-          ]);
-        }
-      }
-    }
-
-    // search for explicit entries in index directives
-    for (const [entry, foundEntries] of Object.entries(indexEntries)) {
-      if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
-        for (const [file, id] of foundEntries) {
-          let score = Math.round(100 * queryLower.length / entry.length)
-          results.push([
-            docNames[file],
-            titles[file],
-            id ? "#" + id : "",
-            null,
-            score,
-            filenames[file],
-          ]);
-        }
-      }
-    }
-
-    // lookup as object
-    objectTerms.forEach((term) =>
-      results.push(...Search.performObjectSearch(term, objectTerms))
-    );
-
-    // lookup as search terms in fulltext
-    results.push(...Search.performTermsSearch(searchTerms, excludedTerms));
-
-    // let the scorer override scores with a custom scoring function
-    if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item)));
-
-    // now sort the results by score (in opposite order of appearance, since the
-    // display function below uses pop() to retrieve items) and then
-    // alphabetically
-    results.sort((a, b) => {
-      const leftScore = a[4];
-      const rightScore = b[4];
-      if (leftScore === rightScore) {
-        // same score: sort alphabetically
-        const leftTitle = a[1].toLowerCase();
-        const rightTitle = b[1].toLowerCase();
-        if (leftTitle === rightTitle) return 0;
-        return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
-      }
-      return leftScore > rightScore ? 1 : -1;
-    });
-
-    // remove duplicate search results
-    // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
-    let seen = new Set();
-    results = results.reverse().reduce((acc, result) => {
-      let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(',');
-      if (!seen.has(resultStr)) {
-        acc.push(result);
-        seen.add(resultStr);
-      }
-      return acc;
-    }, []);
-
-    results = results.reverse();
-
-    // for debugging
-    //Search.lastresults = results.slice();  // a copy
-    // console.info("search results:", Search.lastresults);
-
-    // print the results
-    _displayNextItem(results, results.length, searchTerms);
-  },
-
-  /**
-   * search for object names
-   */
-  performObjectSearch: (object, objectTerms) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const objects = Search._index.objects;
-    const objNames = Search._index.objnames;
-    const titles = Search._index.titles;
-
-    const results = [];
-
-    const objectSearchCallback = (prefix, match) => {
-      const name = match[4]
-      const fullname = (prefix ? prefix + "." : "") + name;
-      const fullnameLower = fullname.toLowerCase();
-      if (fullnameLower.indexOf(object) < 0) return;
-
-      let score = 0;
-      const parts = fullnameLower.split(".");
-
-      // check for different match types: exact matches of full name or
-      // "last name" (i.e. last dotted part)
-      if (fullnameLower === object || parts.slice(-1)[0] === object)
-        score += Scorer.objNameMatch;
-      else if (parts.slice(-1)[0].indexOf(object) > -1)
-        score += Scorer.objPartialMatch; // matches in last name
-
-      const objName = objNames[match[1]][2];
-      const title = titles[match[0]];
-
-      // If more than one term searched for, we require other words to be
-      // found in the name/title/description
-      const otherTerms = new Set(objectTerms);
-      otherTerms.delete(object);
-      if (otherTerms.size > 0) {
-        const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase();
-        if (
-          [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0)
-        )
-          return;
-      }
-
-      let anchor = match[3];
-      if (anchor === "") anchor = fullname;
-      else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname;
-
-      const descr = objName + _(", in ") + title;
-
-      // add custom score for some objects according to scorer
-      if (Scorer.objPrio.hasOwnProperty(match[2]))
-        score += Scorer.objPrio[match[2]];
-      else score += Scorer.objPrioDefault;
-
-      results.push([
-        docNames[match[0]],
-        fullname,
-        "#" + anchor,
-        descr,
-        score,
-        filenames[match[0]],
-      ]);
-    };
-    Object.keys(objects).forEach((prefix) =>
-      objects[prefix].forEach((array) =>
-        objectSearchCallback(prefix, array)
-      )
-    );
-    return results;
-  },
-
-  /**
-   * search for full-text terms in the index
-   */
-  performTermsSearch: (searchTerms, excludedTerms) => {
-    // prepare search
-    const terms = Search._index.terms;
-    const titleTerms = Search._index.titleterms;
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-
-    const scoreMap = new Map();
-    const fileMap = new Map();
-
-    // perform the search on the required terms
-    searchTerms.forEach((word) => {
-      const files = [];
-      const arr = [
-        { files: terms[word], score: Scorer.term },
-        { files: titleTerms[word], score: Scorer.title },
-      ];
-      // add support for partial matches
-      if (word.length > 2) {
-        const escapedWord = _escapeRegExp(word);
-        Object.keys(terms).forEach((term) => {
-          if (term.match(escapedWord) && !terms[word])
-            arr.push({ files: terms[term], score: Scorer.partialTerm });
-        });
-        Object.keys(titleTerms).forEach((term) => {
-          if (term.match(escapedWord) && !titleTerms[word])
-            arr.push({ files: titleTerms[word], score: Scorer.partialTitle });
-        });
-      }
-
-      // no match but word was a required one
-      if (arr.every((record) => record.files === undefined)) return;
-
-      // found search word in contents
-      arr.forEach((record) => {
-        if (record.files === undefined) return;
-
-        let recordFiles = record.files;
-        if (recordFiles.length === undefined) recordFiles = [recordFiles];
-        files.push(...recordFiles);
-
-        // set score for the word in each file
-        recordFiles.forEach((file) => {
-          if (!scoreMap.has(file)) scoreMap.set(file, {});
-          scoreMap.get(file)[word] = record.score;
-        });
-      });
-
-      // create the mapping
-      files.forEach((file) => {
-        if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1)
-          fileMap.get(file).push(word);
-        else fileMap.set(file, [word]);
-      });
-    });
-
-    // now check if the files don't contain excluded terms
-    const results = [];
-    for (const [file, wordList] of fileMap) {
-      // check if all requirements are matched
-
-      // as search terms with length < 3 are discarded
-      const filteredTermCount = [...searchTerms].filter(
-        (term) => term.length > 2
-      ).length;
-      if (
-        wordList.length !== searchTerms.size &&
-        wordList.length !== filteredTermCount
-      )
-        continue;
-
-      // ensure that none of the excluded terms is in the search result
-      if (
-        [...excludedTerms].some(
-          (term) =>
-            terms[term] === file ||
-            titleTerms[term] === file ||
-            (terms[term] || []).includes(file) ||
-            (titleTerms[term] || []).includes(file)
-        )
-      )
-        break;
-
-      // select one (max) score for the file.
-      const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w]));
-      // add result to the result list
-      results.push([
-        docNames[file],
-        titles[file],
-        "",
-        null,
-        score,
-        filenames[file],
-      ]);
-    }
-    return results;
-  },
-
-  /**
-   * helper function to return a node containing the
-   * search summary for a given text. keywords is a list
-   * of stemmed words.
-   */
-  makeSearchSummary: (htmlText, keywords) => {
-    const text = Search.htmlToText(htmlText);
-    if (text === "") return null;
-
-    const textLower = text.toLowerCase();
-    const actualStartPosition = [...keywords]
-      .map((k) => textLower.indexOf(k.toLowerCase()))
-      .filter((i) => i > -1)
-      .slice(-1)[0];
-    const startWithContext = Math.max(actualStartPosition - 120, 0);
-
-    const top = startWithContext === 0 ? "" : "...";
-    const tail = startWithContext + 240 < text.length ? "..." : "";
-
-    let summary = document.createElement("p");
-    summary.classList.add("context");
-    summary.textContent = top + text.substr(startWithContext, 240).trim() + tail;
-
-    return summary;
-  },
-};
-
-_ready(Search.init);
diff --git a/v0.3.0/_static/sphinx_highlight.js b/v0.3.0/_static/sphinx_highlight.js
deleted file mode 100644
index aae669d7e..000000000
--- a/v0.3.0/_static/sphinx_highlight.js
+++ /dev/null
@@ -1,144 +0,0 @@
-/* Highlighting utilities for Sphinx HTML documentation. */
-"use strict";
-
-const SPHINX_HIGHLIGHT_ENABLED = true
-
-/**
- * highlight a given string on a node by wrapping it in
- * span elements with the given class name.
- */
-const _highlight = (node, addItems, text, className) => {
-  if (node.nodeType === Node.TEXT_NODE) {
-    const val = node.nodeValue;
-    const parent = node.parentNode;
-    const pos = val.toLowerCase().indexOf(text);
-    if (
-      pos >= 0 &&
-      !parent.classList.contains(className) &&
-      !parent.classList.contains("nohighlight")
-    ) {
-      let span;
-
-      const closestNode = parent.closest("body, svg, foreignObject");
-      const isInSVG = closestNode && closestNode.matches("svg");
-      if (isInSVG) {
-        span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
-      } else {
-        span = document.createElement("span");
-        span.classList.add(className);
-      }
-
-      span.appendChild(document.createTextNode(val.substr(pos, text.length)));
-      parent.insertBefore(
-        span,
-        parent.insertBefore(
-          document.createTextNode(val.substr(pos + text.length)),
-          node.nextSibling
-        )
-      );
-      node.nodeValue = val.substr(0, pos);
-
-      if (isInSVG) {
-        const rect = document.createElementNS(
-          "http://www.w3.org/2000/svg",
-          "rect"
-        );
-        const bbox = parent.getBBox();
-        rect.x.baseVal.value = bbox.x;
-        rect.y.baseVal.value = bbox.y;
-        rect.width.baseVal.value = bbox.width;
-        rect.height.baseVal.value = bbox.height;
-        rect.setAttribute("class", className);
-        addItems.push({ parent: parent, target: rect });
-      }
-    }
-  } else if (node.matches && !node.matches("button, select, textarea")) {
-    node.childNodes.forEach((el) => _highlight(el, addItems, text, className));
-  }
-};
-const _highlightText = (thisNode, text, className) => {
-  let addItems = [];
-  _highlight(thisNode, addItems, text, className);
-  addItems.forEach((obj) =>
-    obj.parent.insertAdjacentElement("beforebegin", obj.target)
-  );
-};
-
-/**
- * Small JavaScript module for the documentation.
- */
-const SphinxHighlight = {
-
-  /**
-   * highlight the search words provided in localstorage in the text
-   */
-  highlightSearchWords: () => {
-    if (!SPHINX_HIGHLIGHT_ENABLED) return;  // bail if no highlight
-
-    // get and clear terms from localstorage
-    const url = new URL(window.location);
-    const highlight =
-        localStorage.getItem("sphinx_highlight_terms")
-        || url.searchParams.get("highlight")
-        || "";
-    localStorage.removeItem("sphinx_highlight_terms")
-    url.searchParams.delete("highlight");
-    window.history.replaceState({}, "", url);
-
-    // get individual terms from highlight string
-    const terms = highlight.toLowerCase().split(/\s+/).filter(x => x);
-    if (terms.length === 0) return; // nothing to do
-
-    // There should never be more than one element matching "div.body"
-    const divBody = document.querySelectorAll("div.body");
-    const body = divBody.length ? divBody[0] : document.querySelector("body");
-    window.setTimeout(() => {
-      terms.forEach((term) => _highlightText(body, term, "highlighted"));
-    }, 10);
-
-    const searchBox = document.getElementById("searchbox");
-    if (searchBox === null) return;
-    searchBox.appendChild(
-      document
-        .createRange()
-        .createContextualFragment(
-          '<p class="highlight-link">' +
-            '<a href="javascript:SphinxHighlight.hideSearchWords()">' +
-            _("Hide Search Matches") +
-            "</a></p>"
-        )
-    );
-  },
-
-  /**
-   * helper function to hide the search marks again
-   */
-  hideSearchWords: () => {
-    document
-      .querySelectorAll("#searchbox .highlight-link")
-      .forEach((el) => el.remove());
-    document
-      .querySelectorAll("span.highlighted")
-      .forEach((el) => el.classList.remove("highlighted"));
-    localStorage.removeItem("sphinx_highlight_terms")
-  },
-
-  initEscapeListener: () => {
-    // only install a listener if it is really needed
-    if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return;
-
-    document.addEventListener("keydown", (event) => {
-      // bail for input elements
-      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
-      // bail with special keys
-      if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return;
-      if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) {
-        SphinxHighlight.hideSearchWords();
-        event.preventDefault();
-      }
-    });
-  },
-};
-
-_ready(SphinxHighlight.highlightSearchWords);
-_ready(SphinxHighlight.initEscapeListener);
diff --git a/v0.3.0/_static/underscore-1.13.1.js b/v0.3.0/_static/underscore-1.13.1.js
deleted file mode 100644
index ffd77af96..000000000
--- a/v0.3.0/_static/underscore-1.13.1.js
+++ /dev/null
@@ -1,2042 +0,0 @@
-(function (global, factory) {
-  typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() :
-  typeof define === 'function' && define.amd ? define('underscore', factory) :
-  (global = typeof globalThis !== 'undefined' ? globalThis : global || self, (function () {
-    var current = global._;
-    var exports = global._ = factory();
-    exports.noConflict = function () { global._ = current; return exports; };
-  }()));
-}(this, (function () {
-  //     Underscore.js 1.13.1
-  //     https://underscorejs.org
-  //     (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors
-  //     Underscore may be freely distributed under the MIT license.
-
-  // Current version.
-  var VERSION = '1.13.1';
-
-  // Establish the root object, `window` (`self`) in the browser, `global`
-  // on the server, or `this` in some virtual machines. We use `self`
-  // instead of `window` for `WebWorker` support.
-  var root = typeof self == 'object' && self.self === self && self ||
-            typeof global == 'object' && global.global === global && global ||
-            Function('return this')() ||
-            {};
-
-  // Save bytes in the minified (but not gzipped) version:
-  var ArrayProto = Array.prototype, ObjProto = Object.prototype;
-  var SymbolProto = typeof Symbol !== 'undefined' ? Symbol.prototype : null;
-
-  // Create quick reference variables for speed access to core prototypes.
-  var push = ArrayProto.push,
-      slice = ArrayProto.slice,
-      toString = ObjProto.toString,
-      hasOwnProperty = ObjProto.hasOwnProperty;
-
-  // Modern feature detection.
-  var supportsArrayBuffer = typeof ArrayBuffer !== 'undefined',
-      supportsDataView = typeof DataView !== 'undefined';
-
-  // All **ECMAScript 5+** native function implementations that we hope to use
-  // are declared here.
-  var nativeIsArray = Array.isArray,
-      nativeKeys = Object.keys,
-      nativeCreate = Object.create,
-      nativeIsView = supportsArrayBuffer && ArrayBuffer.isView;
-
-  // Create references to these builtin functions because we override them.
-  var _isNaN = isNaN,
-      _isFinite = isFinite;
-
-  // Keys in IE < 9 that won't be iterated by `for key in ...` and thus missed.
-  var hasEnumBug = !{toString: null}.propertyIsEnumerable('toString');
-  var nonEnumerableProps = ['valueOf', 'isPrototypeOf', 'toString',
-    'propertyIsEnumerable', 'hasOwnProperty', 'toLocaleString'];
-
-  // The largest integer that can be represented exactly.
-  var MAX_ARRAY_INDEX = Math.pow(2, 53) - 1;
-
-  // Some functions take a variable number of arguments, or a few expected
-  // arguments at the beginning and then a variable number of values to operate
-  // on. This helper accumulates all remaining arguments past the function’s
-  // argument length (or an explicit `startIndex`), into an array that becomes
-  // the last argument. Similar to ES6’s "rest parameter".
-  function restArguments(func, startIndex) {
-    startIndex = startIndex == null ? func.length - 1 : +startIndex;
-    return function() {
-      var length = Math.max(arguments.length - startIndex, 0),
-          rest = Array(length),
-          index = 0;
-      for (; index < length; index++) {
-        rest[index] = arguments[index + startIndex];
-      }
-      switch (startIndex) {
-        case 0: return func.call(this, rest);
-        case 1: return func.call(this, arguments[0], rest);
-        case 2: return func.call(this, arguments[0], arguments[1], rest);
-      }
-      var args = Array(startIndex + 1);
-      for (index = 0; index < startIndex; index++) {
-        args[index] = arguments[index];
-      }
-      args[startIndex] = rest;
-      return func.apply(this, args);
-    };
-  }
-
-  // Is a given variable an object?
-  function isObject(obj) {
-    var type = typeof obj;
-    return type === 'function' || type === 'object' && !!obj;
-  }
-
-  // Is a given value equal to null?
-  function isNull(obj) {
-    return obj === null;
-  }
-
-  // Is a given variable undefined?
-  function isUndefined(obj) {
-    return obj === void 0;
-  }
-
-  // Is a given value a boolean?
-  function isBoolean(obj) {
-    return obj === true || obj === false || toString.call(obj) === '[object Boolean]';
-  }
-
-  // Is a given value a DOM element?
-  function isElement(obj) {
-    return !!(obj && obj.nodeType === 1);
-  }
-
-  // Internal function for creating a `toString`-based type tester.
-  function tagTester(name) {
-    var tag = '[object ' + name + ']';
-    return function(obj) {
-      return toString.call(obj) === tag;
-    };
-  }
-
-  var isString = tagTester('String');
-
-  var isNumber = tagTester('Number');
-
-  var isDate = tagTester('Date');
-
-  var isRegExp = tagTester('RegExp');
-
-  var isError = tagTester('Error');
-
-  var isSymbol = tagTester('Symbol');
-
-  var isArrayBuffer = tagTester('ArrayBuffer');
-
-  var isFunction = tagTester('Function');
-
-  // Optimize `isFunction` if appropriate. Work around some `typeof` bugs in old
-  // v8, IE 11 (#1621), Safari 8 (#1929), and PhantomJS (#2236).
-  var nodelist = root.document && root.document.childNodes;
-  if (typeof /./ != 'function' && typeof Int8Array != 'object' && typeof nodelist != 'function') {
-    isFunction = function(obj) {
-      return typeof obj == 'function' || false;
-    };
-  }
-
-  var isFunction$1 = isFunction;
-
-  var hasObjectTag = tagTester('Object');
-
-  // In IE 10 - Edge 13, `DataView` has string tag `'[object Object]'`.
-  // In IE 11, the most common among them, this problem also applies to
-  // `Map`, `WeakMap` and `Set`.
-  var hasStringTagBug = (
-        supportsDataView && hasObjectTag(new DataView(new ArrayBuffer(8)))
-      ),
-      isIE11 = (typeof Map !== 'undefined' && hasObjectTag(new Map));
-
-  var isDataView = tagTester('DataView');
-
-  // In IE 10 - Edge 13, we need a different heuristic
-  // to determine whether an object is a `DataView`.
-  function ie10IsDataView(obj) {
-    return obj != null && isFunction$1(obj.getInt8) && isArrayBuffer(obj.buffer);
-  }
-
-  var isDataView$1 = (hasStringTagBug ? ie10IsDataView : isDataView);
-
-  // Is a given value an array?
-  // Delegates to ECMA5's native `Array.isArray`.
-  var isArray = nativeIsArray || tagTester('Array');
-
-  // Internal function to check whether `key` is an own property name of `obj`.
-  function has$1(obj, key) {
-    return obj != null && hasOwnProperty.call(obj, key);
-  }
-
-  var isArguments = tagTester('Arguments');
-
-  // Define a fallback version of the method in browsers (ahem, IE < 9), where
-  // there isn't any inspectable "Arguments" type.
-  (function() {
-    if (!isArguments(arguments)) {
-      isArguments = function(obj) {
-        return has$1(obj, 'callee');
-      };
-    }
-  }());
-
-  var isArguments$1 = isArguments;
-
-  // Is a given object a finite number?
-  function isFinite$1(obj) {
-    return !isSymbol(obj) && _isFinite(obj) && !isNaN(parseFloat(obj));
-  }
-
-  // Is the given value `NaN`?
-  function isNaN$1(obj) {
-    return isNumber(obj) && _isNaN(obj);
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function constant(value) {
-    return function() {
-      return value;
-    };
-  }
-
-  // Common internal logic for `isArrayLike` and `isBufferLike`.
-  function createSizePropertyCheck(getSizeProperty) {
-    return function(collection) {
-      var sizeProperty = getSizeProperty(collection);
-      return typeof sizeProperty == 'number' && sizeProperty >= 0 && sizeProperty <= MAX_ARRAY_INDEX;
-    }
-  }
-
-  // Internal helper to generate a function to obtain property `key` from `obj`.
-  function shallowProperty(key) {
-    return function(obj) {
-      return obj == null ? void 0 : obj[key];
-    };
-  }
-
-  // Internal helper to obtain the `byteLength` property of an object.
-  var getByteLength = shallowProperty('byteLength');
-
-  // Internal helper to determine whether we should spend extensive checks against
-  // `ArrayBuffer` et al.
-  var isBufferLike = createSizePropertyCheck(getByteLength);
-
-  // Is a given value a typed array?
-  var typedArrayPattern = /\[object ((I|Ui)nt(8|16|32)|Float(32|64)|Uint8Clamped|Big(I|Ui)nt64)Array\]/;
-  function isTypedArray(obj) {
-    // `ArrayBuffer.isView` is the most future-proof, so use it when available.
-    // Otherwise, fall back on the above regular expression.
-    return nativeIsView ? (nativeIsView(obj) && !isDataView$1(obj)) :
-                  isBufferLike(obj) && typedArrayPattern.test(toString.call(obj));
-  }
-
-  var isTypedArray$1 = supportsArrayBuffer ? isTypedArray : constant(false);
-
-  // Internal helper to obtain the `length` property of an object.
-  var getLength = shallowProperty('length');
-
-  // Internal helper to create a simple lookup structure.
-  // `collectNonEnumProps` used to depend on `_.contains`, but this led to
-  // circular imports. `emulatedSet` is a one-off solution that only works for
-  // arrays of strings.
-  function emulatedSet(keys) {
-    var hash = {};
-    for (var l = keys.length, i = 0; i < l; ++i) hash[keys[i]] = true;
-    return {
-      contains: function(key) { return hash[key]; },
-      push: function(key) {
-        hash[key] = true;
-        return keys.push(key);
-      }
-    };
-  }
-
-  // Internal helper. Checks `keys` for the presence of keys in IE < 9 that won't
-  // be iterated by `for key in ...` and thus missed. Extends `keys` in place if
-  // needed.
-  function collectNonEnumProps(obj, keys) {
-    keys = emulatedSet(keys);
-    var nonEnumIdx = nonEnumerableProps.length;
-    var constructor = obj.constructor;
-    var proto = isFunction$1(constructor) && constructor.prototype || ObjProto;
-
-    // Constructor is a special case.
-    var prop = 'constructor';
-    if (has$1(obj, prop) && !keys.contains(prop)) keys.push(prop);
-
-    while (nonEnumIdx--) {
-      prop = nonEnumerableProps[nonEnumIdx];
-      if (prop in obj && obj[prop] !== proto[prop] && !keys.contains(prop)) {
-        keys.push(prop);
-      }
-    }
-  }
-
-  // Retrieve the names of an object's own properties.
-  // Delegates to **ECMAScript 5**'s native `Object.keys`.
-  function keys(obj) {
-    if (!isObject(obj)) return [];
-    if (nativeKeys) return nativeKeys(obj);
-    var keys = [];
-    for (var key in obj) if (has$1(obj, key)) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Is a given array, string, or object empty?
-  // An "empty" object has no enumerable own-properties.
-  function isEmpty(obj) {
-    if (obj == null) return true;
-    // Skip the more expensive `toString`-based type checks if `obj` has no
-    // `.length`.
-    var length = getLength(obj);
-    if (typeof length == 'number' && (
-      isArray(obj) || isString(obj) || isArguments$1(obj)
-    )) return length === 0;
-    return getLength(keys(obj)) === 0;
-  }
-
-  // Returns whether an object has a given set of `key:value` pairs.
-  function isMatch(object, attrs) {
-    var _keys = keys(attrs), length = _keys.length;
-    if (object == null) return !length;
-    var obj = Object(object);
-    for (var i = 0; i < length; i++) {
-      var key = _keys[i];
-      if (attrs[key] !== obj[key] || !(key in obj)) return false;
-    }
-    return true;
-  }
-
-  // If Underscore is called as a function, it returns a wrapped object that can
-  // be used OO-style. This wrapper holds altered versions of all functions added
-  // through `_.mixin`. Wrapped objects may be chained.
-  function _$1(obj) {
-    if (obj instanceof _$1) return obj;
-    if (!(this instanceof _$1)) return new _$1(obj);
-    this._wrapped = obj;
-  }
-
-  _$1.VERSION = VERSION;
-
-  // Extracts the result from a wrapped and chained object.
-  _$1.prototype.value = function() {
-    return this._wrapped;
-  };
-
-  // Provide unwrapping proxies for some methods used in engine operations
-  // such as arithmetic and JSON stringification.
-  _$1.prototype.valueOf = _$1.prototype.toJSON = _$1.prototype.value;
-
-  _$1.prototype.toString = function() {
-    return String(this._wrapped);
-  };
-
-  // Internal function to wrap or shallow-copy an ArrayBuffer,
-  // typed array or DataView to a new view, reusing the buffer.
-  function toBufferView(bufferSource) {
-    return new Uint8Array(
-      bufferSource.buffer || bufferSource,
-      bufferSource.byteOffset || 0,
-      getByteLength(bufferSource)
-    );
-  }
-
-  // We use this string twice, so give it a name for minification.
-  var tagDataView = '[object DataView]';
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function eq(a, b, aStack, bStack) {
-    // Identical objects are equal. `0 === -0`, but they aren't identical.
-    // See the [Harmony `egal` proposal](https://wiki.ecmascript.org/doku.php?id=harmony:egal).
-    if (a === b) return a !== 0 || 1 / a === 1 / b;
-    // `null` or `undefined` only equal to itself (strict comparison).
-    if (a == null || b == null) return false;
-    // `NaN`s are equivalent, but non-reflexive.
-    if (a !== a) return b !== b;
-    // Exhaust primitive checks
-    var type = typeof a;
-    if (type !== 'function' && type !== 'object' && typeof b != 'object') return false;
-    return deepEq(a, b, aStack, bStack);
-  }
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function deepEq(a, b, aStack, bStack) {
-    // Unwrap any wrapped objects.
-    if (a instanceof _$1) a = a._wrapped;
-    if (b instanceof _$1) b = b._wrapped;
-    // Compare `[[Class]]` names.
-    var className = toString.call(a);
-    if (className !== toString.call(b)) return false;
-    // Work around a bug in IE 10 - Edge 13.
-    if (hasStringTagBug && className == '[object Object]' && isDataView$1(a)) {
-      if (!isDataView$1(b)) return false;
-      className = tagDataView;
-    }
-    switch (className) {
-      // These types are compared by value.
-      case '[object RegExp]':
-        // RegExps are coerced to strings for comparison (Note: '' + /a/i === '/a/i')
-      case '[object String]':
-        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
-        // equivalent to `new String("5")`.
-        return '' + a === '' + b;
-      case '[object Number]':
-        // `NaN`s are equivalent, but non-reflexive.
-        // Object(NaN) is equivalent to NaN.
-        if (+a !== +a) return +b !== +b;
-        // An `egal` comparison is performed for other numeric values.
-        return +a === 0 ? 1 / +a === 1 / b : +a === +b;
-      case '[object Date]':
-      case '[object Boolean]':
-        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
-        // millisecond representations. Note that invalid dates with millisecond representations
-        // of `NaN` are not equivalent.
-        return +a === +b;
-      case '[object Symbol]':
-        return SymbolProto.valueOf.call(a) === SymbolProto.valueOf.call(b);
-      case '[object ArrayBuffer]':
-      case tagDataView:
-        // Coerce to typed array so we can fall through.
-        return deepEq(toBufferView(a), toBufferView(b), aStack, bStack);
-    }
-
-    var areArrays = className === '[object Array]';
-    if (!areArrays && isTypedArray$1(a)) {
-        var byteLength = getByteLength(a);
-        if (byteLength !== getByteLength(b)) return false;
-        if (a.buffer === b.buffer && a.byteOffset === b.byteOffset) return true;
-        areArrays = true;
-    }
-    if (!areArrays) {
-      if (typeof a != 'object' || typeof b != 'object') return false;
-
-      // Objects with different constructors are not equivalent, but `Object`s or `Array`s
-      // from different frames are.
-      var aCtor = a.constructor, bCtor = b.constructor;
-      if (aCtor !== bCtor && !(isFunction$1(aCtor) && aCtor instanceof aCtor &&
-                               isFunction$1(bCtor) && bCtor instanceof bCtor)
-                          && ('constructor' in a && 'constructor' in b)) {
-        return false;
-      }
-    }
-    // Assume equality for cyclic structures. The algorithm for detecting cyclic
-    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
-
-    // Initializing stack of traversed objects.
-    // It's done here since we only need them for objects and arrays comparison.
-    aStack = aStack || [];
-    bStack = bStack || [];
-    var length = aStack.length;
-    while (length--) {
-      // Linear search. Performance is inversely proportional to the number of
-      // unique nested structures.
-      if (aStack[length] === a) return bStack[length] === b;
-    }
-
-    // Add the first object to the stack of traversed objects.
-    aStack.push(a);
-    bStack.push(b);
-
-    // Recursively compare objects and arrays.
-    if (areArrays) {
-      // Compare array lengths to determine if a deep comparison is necessary.
-      length = a.length;
-      if (length !== b.length) return false;
-      // Deep compare the contents, ignoring non-numeric properties.
-      while (length--) {
-        if (!eq(a[length], b[length], aStack, bStack)) return false;
-      }
-    } else {
-      // Deep compare objects.
-      var _keys = keys(a), key;
-      length = _keys.length;
-      // Ensure that both objects contain the same number of properties before comparing deep equality.
-      if (keys(b).length !== length) return false;
-      while (length--) {
-        // Deep compare each member
-        key = _keys[length];
-        if (!(has$1(b, key) && eq(a[key], b[key], aStack, bStack))) return false;
-      }
-    }
-    // Remove the first object from the stack of traversed objects.
-    aStack.pop();
-    bStack.pop();
-    return true;
-  }
-
-  // Perform a deep comparison to check if two objects are equal.
-  function isEqual(a, b) {
-    return eq(a, b);
-  }
-
-  // Retrieve all the enumerable property names of an object.
-  function allKeys(obj) {
-    if (!isObject(obj)) return [];
-    var keys = [];
-    for (var key in obj) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Since the regular `Object.prototype.toString` type tests don't work for
-  // some types in IE 11, we use a fingerprinting heuristic instead, based
-  // on the methods. It's not great, but it's the best we got.
-  // The fingerprint method lists are defined below.
-  function ie11fingerprint(methods) {
-    var length = getLength(methods);
-    return function(obj) {
-      if (obj == null) return false;
-      // `Map`, `WeakMap` and `Set` have no enumerable keys.
-      var keys = allKeys(obj);
-      if (getLength(keys)) return false;
-      for (var i = 0; i < length; i++) {
-        if (!isFunction$1(obj[methods[i]])) return false;
-      }
-      // If we are testing against `WeakMap`, we need to ensure that
-      // `obj` doesn't have a `forEach` method in order to distinguish
-      // it from a regular `Map`.
-      return methods !== weakMapMethods || !isFunction$1(obj[forEachName]);
-    };
-  }
-
-  // In the interest of compact minification, we write
-  // each string in the fingerprints only once.
-  var forEachName = 'forEach',
-      hasName = 'has',
-      commonInit = ['clear', 'delete'],
-      mapTail = ['get', hasName, 'set'];
-
-  // `Map`, `WeakMap` and `Set` each have slightly different
-  // combinations of the above sublists.
-  var mapMethods = commonInit.concat(forEachName, mapTail),
-      weakMapMethods = commonInit.concat(mapTail),
-      setMethods = ['add'].concat(commonInit, forEachName, hasName);
-
-  var isMap = isIE11 ? ie11fingerprint(mapMethods) : tagTester('Map');
-
-  var isWeakMap = isIE11 ? ie11fingerprint(weakMapMethods) : tagTester('WeakMap');
-
-  var isSet = isIE11 ? ie11fingerprint(setMethods) : tagTester('Set');
-
-  var isWeakSet = tagTester('WeakSet');
-
-  // Retrieve the values of an object's properties.
-  function values(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var values = Array(length);
-    for (var i = 0; i < length; i++) {
-      values[i] = obj[_keys[i]];
-    }
-    return values;
-  }
-
-  // Convert an object into a list of `[key, value]` pairs.
-  // The opposite of `_.object` with one argument.
-  function pairs(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var pairs = Array(length);
-    for (var i = 0; i < length; i++) {
-      pairs[i] = [_keys[i], obj[_keys[i]]];
-    }
-    return pairs;
-  }
-
-  // Invert the keys and values of an object. The values must be serializable.
-  function invert(obj) {
-    var result = {};
-    var _keys = keys(obj);
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      result[obj[_keys[i]]] = _keys[i];
-    }
-    return result;
-  }
-
-  // Return a sorted list of the function names available on the object.
-  function functions(obj) {
-    var names = [];
-    for (var key in obj) {
-      if (isFunction$1(obj[key])) names.push(key);
-    }
-    return names.sort();
-  }
-
-  // An internal function for creating assigner functions.
-  function createAssigner(keysFunc, defaults) {
-    return function(obj) {
-      var length = arguments.length;
-      if (defaults) obj = Object(obj);
-      if (length < 2 || obj == null) return obj;
-      for (var index = 1; index < length; index++) {
-        var source = arguments[index],
-            keys = keysFunc(source),
-            l = keys.length;
-        for (var i = 0; i < l; i++) {
-          var key = keys[i];
-          if (!defaults || obj[key] === void 0) obj[key] = source[key];
-        }
-      }
-      return obj;
-    };
-  }
-
-  // Extend a given object with all the properties in passed-in object(s).
-  var extend = createAssigner(allKeys);
-
-  // Assigns a given object with all the own properties in the passed-in
-  // object(s).
-  // (https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Object/assign)
-  var extendOwn = createAssigner(keys);
-
-  // Fill in a given object with default properties.
-  var defaults = createAssigner(allKeys, true);
-
-  // Create a naked function reference for surrogate-prototype-swapping.
-  function ctor() {
-    return function(){};
-  }
-
-  // An internal function for creating a new object that inherits from another.
-  function baseCreate(prototype) {
-    if (!isObject(prototype)) return {};
-    if (nativeCreate) return nativeCreate(prototype);
-    var Ctor = ctor();
-    Ctor.prototype = prototype;
-    var result = new Ctor;
-    Ctor.prototype = null;
-    return result;
-  }
-
-  // Creates an object that inherits from the given prototype object.
-  // If additional properties are provided then they will be added to the
-  // created object.
-  function create(prototype, props) {
-    var result = baseCreate(prototype);
-    if (props) extendOwn(result, props);
-    return result;
-  }
-
-  // Create a (shallow-cloned) duplicate of an object.
-  function clone(obj) {
-    if (!isObject(obj)) return obj;
-    return isArray(obj) ? obj.slice() : extend({}, obj);
-  }
-
-  // Invokes `interceptor` with the `obj` and then returns `obj`.
-  // The primary purpose of this method is to "tap into" a method chain, in
-  // order to perform operations on intermediate results within the chain.
-  function tap(obj, interceptor) {
-    interceptor(obj);
-    return obj;
-  }
-
-  // Normalize a (deep) property `path` to array.
-  // Like `_.iteratee`, this function can be customized.
-  function toPath$1(path) {
-    return isArray(path) ? path : [path];
-  }
-  _$1.toPath = toPath$1;
-
-  // Internal wrapper for `_.toPath` to enable minification.
-  // Similar to `cb` for `_.iteratee`.
-  function toPath(path) {
-    return _$1.toPath(path);
-  }
-
-  // Internal function to obtain a nested property in `obj` along `path`.
-  function deepGet(obj, path) {
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      if (obj == null) return void 0;
-      obj = obj[path[i]];
-    }
-    return length ? obj : void 0;
-  }
-
-  // Get the value of the (deep) property on `path` from `object`.
-  // If any property in `path` does not exist or if the value is
-  // `undefined`, return `defaultValue` instead.
-  // The `path` is normalized through `_.toPath`.
-  function get(object, path, defaultValue) {
-    var value = deepGet(object, toPath(path));
-    return isUndefined(value) ? defaultValue : value;
-  }
-
-  // Shortcut function for checking if an object has a given property directly on
-  // itself (in other words, not on a prototype). Unlike the internal `has`
-  // function, this public version can also traverse nested properties.
-  function has(obj, path) {
-    path = toPath(path);
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      var key = path[i];
-      if (!has$1(obj, key)) return false;
-      obj = obj[key];
-    }
-    return !!length;
-  }
-
-  // Keep the identity function around for default iteratees.
-  function identity(value) {
-    return value;
-  }
-
-  // Returns a predicate for checking whether an object has a given set of
-  // `key:value` pairs.
-  function matcher(attrs) {
-    attrs = extendOwn({}, attrs);
-    return function(obj) {
-      return isMatch(obj, attrs);
-    };
-  }
-
-  // Creates a function that, when passed an object, will traverse that object’s
-  // properties down the given `path`, specified as an array of keys or indices.
-  function property(path) {
-    path = toPath(path);
-    return function(obj) {
-      return deepGet(obj, path);
-    };
-  }
-
-  // Internal function that returns an efficient (for current engines) version
-  // of the passed-in callback, to be repeatedly applied in other Underscore
-  // functions.
-  function optimizeCb(func, context, argCount) {
-    if (context === void 0) return func;
-    switch (argCount == null ? 3 : argCount) {
-      case 1: return function(value) {
-        return func.call(context, value);
-      };
-      // The 2-argument case is omitted because we’re not using it.
-      case 3: return function(value, index, collection) {
-        return func.call(context, value, index, collection);
-      };
-      case 4: return function(accumulator, value, index, collection) {
-        return func.call(context, accumulator, value, index, collection);
-      };
-    }
-    return function() {
-      return func.apply(context, arguments);
-    };
-  }
-
-  // An internal function to generate callbacks that can be applied to each
-  // element in a collection, returning the desired result — either `_.identity`,
-  // an arbitrary callback, a property matcher, or a property accessor.
-  function baseIteratee(value, context, argCount) {
-    if (value == null) return identity;
-    if (isFunction$1(value)) return optimizeCb(value, context, argCount);
-    if (isObject(value) && !isArray(value)) return matcher(value);
-    return property(value);
-  }
-
-  // External wrapper for our callback generator. Users may customize
-  // `_.iteratee` if they want additional predicate/iteratee shorthand styles.
-  // This abstraction hides the internal-only `argCount` argument.
-  function iteratee(value, context) {
-    return baseIteratee(value, context, Infinity);
-  }
-  _$1.iteratee = iteratee;
-
-  // The function we call internally to generate a callback. It invokes
-  // `_.iteratee` if overridden, otherwise `baseIteratee`.
-  function cb(value, context, argCount) {
-    if (_$1.iteratee !== iteratee) return _$1.iteratee(value, context);
-    return baseIteratee(value, context, argCount);
-  }
-
-  // Returns the results of applying the `iteratee` to each element of `obj`.
-  // In contrast to `_.map` it returns an object.
-  function mapObject(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = keys(obj),
-        length = _keys.length,
-        results = {};
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys[index];
-      results[currentKey] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function noop(){}
-
-  // Generates a function for a given object that returns a given property.
-  function propertyOf(obj) {
-    if (obj == null) return noop;
-    return function(path) {
-      return get(obj, path);
-    };
-  }
-
-  // Run a function **n** times.
-  function times(n, iteratee, context) {
-    var accum = Array(Math.max(0, n));
-    iteratee = optimizeCb(iteratee, context, 1);
-    for (var i = 0; i < n; i++) accum[i] = iteratee(i);
-    return accum;
-  }
-
-  // Return a random integer between `min` and `max` (inclusive).
-  function random(min, max) {
-    if (max == null) {
-      max = min;
-      min = 0;
-    }
-    return min + Math.floor(Math.random() * (max - min + 1));
-  }
-
-  // A (possibly faster) way to get the current timestamp as an integer.
-  var now = Date.now || function() {
-    return new Date().getTime();
-  };
-
-  // Internal helper to generate functions for escaping and unescaping strings
-  // to/from HTML interpolation.
-  function createEscaper(map) {
-    var escaper = function(match) {
-      return map[match];
-    };
-    // Regexes for identifying a key that needs to be escaped.
-    var source = '(?:' + keys(map).join('|') + ')';
-    var testRegexp = RegExp(source);
-    var replaceRegexp = RegExp(source, 'g');
-    return function(string) {
-      string = string == null ? '' : '' + string;
-      return testRegexp.test(string) ? string.replace(replaceRegexp, escaper) : string;
-    };
-  }
-
-  // Internal list of HTML entities for escaping.
-  var escapeMap = {
-    '&': '&amp;',
-    '<': '&lt;',
-    '>': '&gt;',
-    '"': '&quot;',
-    "'": '&#x27;',
-    '`': '&#x60;'
-  };
-
-  // Function for escaping strings to HTML interpolation.
-  var _escape = createEscaper(escapeMap);
-
-  // Internal list of HTML entities for unescaping.
-  var unescapeMap = invert(escapeMap);
-
-  // Function for unescaping strings from HTML interpolation.
-  var _unescape = createEscaper(unescapeMap);
-
-  // By default, Underscore uses ERB-style template delimiters. Change the
-  // following template settings to use alternative delimiters.
-  var templateSettings = _$1.templateSettings = {
-    evaluate: /<%([\s\S]+?)%>/g,
-    interpolate: /<%=([\s\S]+?)%>/g,
-    escape: /<%-([\s\S]+?)%>/g
-  };
-
-  // When customizing `_.templateSettings`, if you don't want to define an
-  // interpolation, evaluation or escaping regex, we need one that is
-  // guaranteed not to match.
-  var noMatch = /(.)^/;
-
-  // Certain characters need to be escaped so that they can be put into a
-  // string literal.
-  var escapes = {
-    "'": "'",
-    '\\': '\\',
-    '\r': 'r',
-    '\n': 'n',
-    '\u2028': 'u2028',
-    '\u2029': 'u2029'
-  };
-
-  var escapeRegExp = /\\|'|\r|\n|\u2028|\u2029/g;
-
-  function escapeChar(match) {
-    return '\\' + escapes[match];
-  }
-
-  // In order to prevent third-party code injection through
-  // `_.templateSettings.variable`, we test it against the following regular
-  // expression. It is intentionally a bit more liberal than just matching valid
-  // identifiers, but still prevents possible loopholes through defaults or
-  // destructuring assignment.
-  var bareIdentifier = /^\s*(\w|\$)+\s*$/;
-
-  // JavaScript micro-templating, similar to John Resig's implementation.
-  // Underscore templating handles arbitrary delimiters, preserves whitespace,
-  // and correctly escapes quotes within interpolated code.
-  // NB: `oldSettings` only exists for backwards compatibility.
-  function template(text, settings, oldSettings) {
-    if (!settings && oldSettings) settings = oldSettings;
-    settings = defaults({}, settings, _$1.templateSettings);
-
-    // Combine delimiters into one regular expression via alternation.
-    var matcher = RegExp([
-      (settings.escape || noMatch).source,
-      (settings.interpolate || noMatch).source,
-      (settings.evaluate || noMatch).source
-    ].join('|') + '|$', 'g');
-
-    // Compile the template source, escaping string literals appropriately.
-    var index = 0;
-    var source = "__p+='";
-    text.replace(matcher, function(match, escape, interpolate, evaluate, offset) {
-      source += text.slice(index, offset).replace(escapeRegExp, escapeChar);
-      index = offset + match.length;
-
-      if (escape) {
-        source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'";
-      } else if (interpolate) {
-        source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'";
-      } else if (evaluate) {
-        source += "';\n" + evaluate + "\n__p+='";
-      }
-
-      // Adobe VMs need the match returned to produce the correct offset.
-      return match;
-    });
-    source += "';\n";
-
-    var argument = settings.variable;
-    if (argument) {
-      // Insure against third-party code injection. (CVE-2021-23358)
-      if (!bareIdentifier.test(argument)) throw new Error(
-        'variable is not a bare identifier: ' + argument
-      );
-    } else {
-      // If a variable is not specified, place data values in local scope.
-      source = 'with(obj||{}){\n' + source + '}\n';
-      argument = 'obj';
-    }
-
-    source = "var __t,__p='',__j=Array.prototype.join," +
-      "print=function(){__p+=__j.call(arguments,'');};\n" +
-      source + 'return __p;\n';
-
-    var render;
-    try {
-      render = new Function(argument, '_', source);
-    } catch (e) {
-      e.source = source;
-      throw e;
-    }
-
-    var template = function(data) {
-      return render.call(this, data, _$1);
-    };
-
-    // Provide the compiled source as a convenience for precompilation.
-    template.source = 'function(' + argument + '){\n' + source + '}';
-
-    return template;
-  }
-
-  // Traverses the children of `obj` along `path`. If a child is a function, it
-  // is invoked with its parent as context. Returns the value of the final
-  // child, or `fallback` if any child is undefined.
-  function result(obj, path, fallback) {
-    path = toPath(path);
-    var length = path.length;
-    if (!length) {
-      return isFunction$1(fallback) ? fallback.call(obj) : fallback;
-    }
-    for (var i = 0; i < length; i++) {
-      var prop = obj == null ? void 0 : obj[path[i]];
-      if (prop === void 0) {
-        prop = fallback;
-        i = length; // Ensure we don't continue iterating.
-      }
-      obj = isFunction$1(prop) ? prop.call(obj) : prop;
-    }
-    return obj;
-  }
-
-  // Generate a unique integer id (unique within the entire client session).
-  // Useful for temporary DOM ids.
-  var idCounter = 0;
-  function uniqueId(prefix) {
-    var id = ++idCounter + '';
-    return prefix ? prefix + id : id;
-  }
-
-  // Start chaining a wrapped Underscore object.
-  function chain(obj) {
-    var instance = _$1(obj);
-    instance._chain = true;
-    return instance;
-  }
-
-  // Internal function to execute `sourceFunc` bound to `context` with optional
-  // `args`. Determines whether to execute a function as a constructor or as a
-  // normal function.
-  function executeBound(sourceFunc, boundFunc, context, callingContext, args) {
-    if (!(callingContext instanceof boundFunc)) return sourceFunc.apply(context, args);
-    var self = baseCreate(sourceFunc.prototype);
-    var result = sourceFunc.apply(self, args);
-    if (isObject(result)) return result;
-    return self;
-  }
-
-  // Partially apply a function by creating a version that has had some of its
-  // arguments pre-filled, without changing its dynamic `this` context. `_` acts
-  // as a placeholder by default, allowing any combination of arguments to be
-  // pre-filled. Set `_.partial.placeholder` for a custom placeholder argument.
-  var partial = restArguments(function(func, boundArgs) {
-    var placeholder = partial.placeholder;
-    var bound = function() {
-      var position = 0, length = boundArgs.length;
-      var args = Array(length);
-      for (var i = 0; i < length; i++) {
-        args[i] = boundArgs[i] === placeholder ? arguments[position++] : boundArgs[i];
-      }
-      while (position < arguments.length) args.push(arguments[position++]);
-      return executeBound(func, bound, this, this, args);
-    };
-    return bound;
-  });
-
-  partial.placeholder = _$1;
-
-  // Create a function bound to a given object (assigning `this`, and arguments,
-  // optionally).
-  var bind = restArguments(function(func, context, args) {
-    if (!isFunction$1(func)) throw new TypeError('Bind must be called on a function');
-    var bound = restArguments(function(callArgs) {
-      return executeBound(func, bound, context, this, args.concat(callArgs));
-    });
-    return bound;
-  });
-
-  // Internal helper for collection methods to determine whether a collection
-  // should be iterated as an array or as an object.
-  // Related: https://people.mozilla.org/~jorendorff/es6-draft.html#sec-tolength
-  // Avoids a very nasty iOS 8 JIT bug on ARM-64. #2094
-  var isArrayLike = createSizePropertyCheck(getLength);
-
-  // Internal implementation of a recursive `flatten` function.
-  function flatten$1(input, depth, strict, output) {
-    output = output || [];
-    if (!depth && depth !== 0) {
-      depth = Infinity;
-    } else if (depth <= 0) {
-      return output.concat(input);
-    }
-    var idx = output.length;
-    for (var i = 0, length = getLength(input); i < length; i++) {
-      var value = input[i];
-      if (isArrayLike(value) && (isArray(value) || isArguments$1(value))) {
-        // Flatten current level of array or arguments object.
-        if (depth > 1) {
-          flatten$1(value, depth - 1, strict, output);
-          idx = output.length;
-        } else {
-          var j = 0, len = value.length;
-          while (j < len) output[idx++] = value[j++];
-        }
-      } else if (!strict) {
-        output[idx++] = value;
-      }
-    }
-    return output;
-  }
-
-  // Bind a number of an object's methods to that object. Remaining arguments
-  // are the method names to be bound. Useful for ensuring that all callbacks
-  // defined on an object belong to it.
-  var bindAll = restArguments(function(obj, keys) {
-    keys = flatten$1(keys, false, false);
-    var index = keys.length;
-    if (index < 1) throw new Error('bindAll must be passed function names');
-    while (index--) {
-      var key = keys[index];
-      obj[key] = bind(obj[key], obj);
-    }
-    return obj;
-  });
-
-  // Memoize an expensive function by storing its results.
-  function memoize(func, hasher) {
-    var memoize = function(key) {
-      var cache = memoize.cache;
-      var address = '' + (hasher ? hasher.apply(this, arguments) : key);
-      if (!has$1(cache, address)) cache[address] = func.apply(this, arguments);
-      return cache[address];
-    };
-    memoize.cache = {};
-    return memoize;
-  }
-
-  // Delays a function for the given number of milliseconds, and then calls
-  // it with the arguments supplied.
-  var delay = restArguments(function(func, wait, args) {
-    return setTimeout(function() {
-      return func.apply(null, args);
-    }, wait);
-  });
-
-  // Defers a function, scheduling it to run after the current call stack has
-  // cleared.
-  var defer = partial(delay, _$1, 1);
-
-  // Returns a function, that, when invoked, will only be triggered at most once
-  // during a given window of time. Normally, the throttled function will run
-  // as much as it can, without ever going more than once per `wait` duration;
-  // but if you'd like to disable the execution on the leading edge, pass
-  // `{leading: false}`. To disable execution on the trailing edge, ditto.
-  function throttle(func, wait, options) {
-    var timeout, context, args, result;
-    var previous = 0;
-    if (!options) options = {};
-
-    var later = function() {
-      previous = options.leading === false ? 0 : now();
-      timeout = null;
-      result = func.apply(context, args);
-      if (!timeout) context = args = null;
-    };
-
-    var throttled = function() {
-      var _now = now();
-      if (!previous && options.leading === false) previous = _now;
-      var remaining = wait - (_now - previous);
-      context = this;
-      args = arguments;
-      if (remaining <= 0 || remaining > wait) {
-        if (timeout) {
-          clearTimeout(timeout);
-          timeout = null;
-        }
-        previous = _now;
-        result = func.apply(context, args);
-        if (!timeout) context = args = null;
-      } else if (!timeout && options.trailing !== false) {
-        timeout = setTimeout(later, remaining);
-      }
-      return result;
-    };
-
-    throttled.cancel = function() {
-      clearTimeout(timeout);
-      previous = 0;
-      timeout = context = args = null;
-    };
-
-    return throttled;
-  }
-
-  // When a sequence of calls of the returned function ends, the argument
-  // function is triggered. The end of a sequence is defined by the `wait`
-  // parameter. If `immediate` is passed, the argument function will be
-  // triggered at the beginning of the sequence instead of at the end.
-  function debounce(func, wait, immediate) {
-    var timeout, previous, args, result, context;
-
-    var later = function() {
-      var passed = now() - previous;
-      if (wait > passed) {
-        timeout = setTimeout(later, wait - passed);
-      } else {
-        timeout = null;
-        if (!immediate) result = func.apply(context, args);
-        // This check is needed because `func` can recursively invoke `debounced`.
-        if (!timeout) args = context = null;
-      }
-    };
-
-    var debounced = restArguments(function(_args) {
-      context = this;
-      args = _args;
-      previous = now();
-      if (!timeout) {
-        timeout = setTimeout(later, wait);
-        if (immediate) result = func.apply(context, args);
-      }
-      return result;
-    });
-
-    debounced.cancel = function() {
-      clearTimeout(timeout);
-      timeout = args = context = null;
-    };
-
-    return debounced;
-  }
-
-  // Returns the first function passed as an argument to the second,
-  // allowing you to adjust arguments, run code before and after, and
-  // conditionally execute the original function.
-  function wrap(func, wrapper) {
-    return partial(wrapper, func);
-  }
-
-  // Returns a negated version of the passed-in predicate.
-  function negate(predicate) {
-    return function() {
-      return !predicate.apply(this, arguments);
-    };
-  }
-
-  // Returns a function that is the composition of a list of functions, each
-  // consuming the return value of the function that follows.
-  function compose() {
-    var args = arguments;
-    var start = args.length - 1;
-    return function() {
-      var i = start;
-      var result = args[start].apply(this, arguments);
-      while (i--) result = args[i].call(this, result);
-      return result;
-    };
-  }
-
-  // Returns a function that will only be executed on and after the Nth call.
-  function after(times, func) {
-    return function() {
-      if (--times < 1) {
-        return func.apply(this, arguments);
-      }
-    };
-  }
-
-  // Returns a function that will only be executed up to (but not including) the
-  // Nth call.
-  function before(times, func) {
-    var memo;
-    return function() {
-      if (--times > 0) {
-        memo = func.apply(this, arguments);
-      }
-      if (times <= 1) func = null;
-      return memo;
-    };
-  }
-
-  // Returns a function that will be executed at most one time, no matter how
-  // often you call it. Useful for lazy initialization.
-  var once = partial(before, 2);
-
-  // Returns the first key on an object that passes a truth test.
-  function findKey(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = keys(obj), key;
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      key = _keys[i];
-      if (predicate(obj[key], key, obj)) return key;
-    }
-  }
-
-  // Internal function to generate `_.findIndex` and `_.findLastIndex`.
-  function createPredicateIndexFinder(dir) {
-    return function(array, predicate, context) {
-      predicate = cb(predicate, context);
-      var length = getLength(array);
-      var index = dir > 0 ? 0 : length - 1;
-      for (; index >= 0 && index < length; index += dir) {
-        if (predicate(array[index], index, array)) return index;
-      }
-      return -1;
-    };
-  }
-
-  // Returns the first index on an array-like that passes a truth test.
-  var findIndex = createPredicateIndexFinder(1);
-
-  // Returns the last index on an array-like that passes a truth test.
-  var findLastIndex = createPredicateIndexFinder(-1);
-
-  // Use a comparator function to figure out the smallest index at which
-  // an object should be inserted so as to maintain order. Uses binary search.
-  function sortedIndex(array, obj, iteratee, context) {
-    iteratee = cb(iteratee, context, 1);
-    var value = iteratee(obj);
-    var low = 0, high = getLength(array);
-    while (low < high) {
-      var mid = Math.floor((low + high) / 2);
-      if (iteratee(array[mid]) < value) low = mid + 1; else high = mid;
-    }
-    return low;
-  }
-
-  // Internal function to generate the `_.indexOf` and `_.lastIndexOf` functions.
-  function createIndexFinder(dir, predicateFind, sortedIndex) {
-    return function(array, item, idx) {
-      var i = 0, length = getLength(array);
-      if (typeof idx == 'number') {
-        if (dir > 0) {
-          i = idx >= 0 ? idx : Math.max(idx + length, i);
-        } else {
-          length = idx >= 0 ? Math.min(idx + 1, length) : idx + length + 1;
-        }
-      } else if (sortedIndex && idx && length) {
-        idx = sortedIndex(array, item);
-        return array[idx] === item ? idx : -1;
-      }
-      if (item !== item) {
-        idx = predicateFind(slice.call(array, i, length), isNaN$1);
-        return idx >= 0 ? idx + i : -1;
-      }
-      for (idx = dir > 0 ? i : length - 1; idx >= 0 && idx < length; idx += dir) {
-        if (array[idx] === item) return idx;
-      }
-      return -1;
-    };
-  }
-
-  // Return the position of the first occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  // If the array is large and already in sort order, pass `true`
-  // for **isSorted** to use binary search.
-  var indexOf = createIndexFinder(1, findIndex, sortedIndex);
-
-  // Return the position of the last occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  var lastIndexOf = createIndexFinder(-1, findLastIndex);
-
-  // Return the first value which passes a truth test.
-  function find(obj, predicate, context) {
-    var keyFinder = isArrayLike(obj) ? findIndex : findKey;
-    var key = keyFinder(obj, predicate, context);
-    if (key !== void 0 && key !== -1) return obj[key];
-  }
-
-  // Convenience version of a common use case of `_.find`: getting the first
-  // object containing specific `key:value` pairs.
-  function findWhere(obj, attrs) {
-    return find(obj, matcher(attrs));
-  }
-
-  // The cornerstone for collection functions, an `each`
-  // implementation, aka `forEach`.
-  // Handles raw objects in addition to array-likes. Treats all
-  // sparse array-likes as if they were dense.
-  function each(obj, iteratee, context) {
-    iteratee = optimizeCb(iteratee, context);
-    var i, length;
-    if (isArrayLike(obj)) {
-      for (i = 0, length = obj.length; i < length; i++) {
-        iteratee(obj[i], i, obj);
-      }
-    } else {
-      var _keys = keys(obj);
-      for (i = 0, length = _keys.length; i < length; i++) {
-        iteratee(obj[_keys[i]], _keys[i], obj);
-      }
-    }
-    return obj;
-  }
-
-  // Return the results of applying the iteratee to each element.
-  function map(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length,
-        results = Array(length);
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      results[index] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Internal helper to create a reducing function, iterating left or right.
-  function createReduce(dir) {
-    // Wrap code that reassigns argument variables in a separate function than
-    // the one that accesses `arguments.length` to avoid a perf hit. (#1991)
-    var reducer = function(obj, iteratee, memo, initial) {
-      var _keys = !isArrayLike(obj) && keys(obj),
-          length = (_keys || obj).length,
-          index = dir > 0 ? 0 : length - 1;
-      if (!initial) {
-        memo = obj[_keys ? _keys[index] : index];
-        index += dir;
-      }
-      for (; index >= 0 && index < length; index += dir) {
-        var currentKey = _keys ? _keys[index] : index;
-        memo = iteratee(memo, obj[currentKey], currentKey, obj);
-      }
-      return memo;
-    };
-
-    return function(obj, iteratee, memo, context) {
-      var initial = arguments.length >= 3;
-      return reducer(obj, optimizeCb(iteratee, context, 4), memo, initial);
-    };
-  }
-
-  // **Reduce** builds up a single result from a list of values, aka `inject`,
-  // or `foldl`.
-  var reduce = createReduce(1);
-
-  // The right-associative version of reduce, also known as `foldr`.
-  var reduceRight = createReduce(-1);
-
-  // Return all the elements that pass a truth test.
-  function filter(obj, predicate, context) {
-    var results = [];
-    predicate = cb(predicate, context);
-    each(obj, function(value, index, list) {
-      if (predicate(value, index, list)) results.push(value);
-    });
-    return results;
-  }
-
-  // Return all the elements for which a truth test fails.
-  function reject(obj, predicate, context) {
-    return filter(obj, negate(cb(predicate)), context);
-  }
-
-  // Determine whether all of the elements pass a truth test.
-  function every(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (!predicate(obj[currentKey], currentKey, obj)) return false;
-    }
-    return true;
-  }
-
-  // Determine if at least one element in the object passes a truth test.
-  function some(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (predicate(obj[currentKey], currentKey, obj)) return true;
-    }
-    return false;
-  }
-
-  // Determine if the array or object contains a given item (using `===`).
-  function contains(obj, item, fromIndex, guard) {
-    if (!isArrayLike(obj)) obj = values(obj);
-    if (typeof fromIndex != 'number' || guard) fromIndex = 0;
-    return indexOf(obj, item, fromIndex) >= 0;
-  }
-
-  // Invoke a method (with arguments) on every item in a collection.
-  var invoke = restArguments(function(obj, path, args) {
-    var contextPath, func;
-    if (isFunction$1(path)) {
-      func = path;
-    } else {
-      path = toPath(path);
-      contextPath = path.slice(0, -1);
-      path = path[path.length - 1];
-    }
-    return map(obj, function(context) {
-      var method = func;
-      if (!method) {
-        if (contextPath && contextPath.length) {
-          context = deepGet(context, contextPath);
-        }
-        if (context == null) return void 0;
-        method = context[path];
-      }
-      return method == null ? method : method.apply(context, args);
-    });
-  });
-
-  // Convenience version of a common use case of `_.map`: fetching a property.
-  function pluck(obj, key) {
-    return map(obj, property(key));
-  }
-
-  // Convenience version of a common use case of `_.filter`: selecting only
-  // objects containing specific `key:value` pairs.
-  function where(obj, attrs) {
-    return filter(obj, matcher(attrs));
-  }
-
-  // Return the maximum element (or element-based computation).
-  function max(obj, iteratee, context) {
-    var result = -Infinity, lastComputed = -Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value > result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed > lastComputed || computed === -Infinity && result === -Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Return the minimum element (or element-based computation).
-  function min(obj, iteratee, context) {
-    var result = Infinity, lastComputed = Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value < result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed < lastComputed || computed === Infinity && result === Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Sample **n** random values from a collection using the modern version of the
-  // [Fisher-Yates shuffle](https://en.wikipedia.org/wiki/Fisher–Yates_shuffle).
-  // If **n** is not specified, returns a single random element.
-  // The internal `guard` argument allows it to work with `_.map`.
-  function sample(obj, n, guard) {
-    if (n == null || guard) {
-      if (!isArrayLike(obj)) obj = values(obj);
-      return obj[random(obj.length - 1)];
-    }
-    var sample = isArrayLike(obj) ? clone(obj) : values(obj);
-    var length = getLength(sample);
-    n = Math.max(Math.min(n, length), 0);
-    var last = length - 1;
-    for (var index = 0; index < n; index++) {
-      var rand = random(index, last);
-      var temp = sample[index];
-      sample[index] = sample[rand];
-      sample[rand] = temp;
-    }
-    return sample.slice(0, n);
-  }
-
-  // Shuffle a collection.
-  function shuffle(obj) {
-    return sample(obj, Infinity);
-  }
-
-  // Sort the object's values by a criterion produced by an iteratee.
-  function sortBy(obj, iteratee, context) {
-    var index = 0;
-    iteratee = cb(iteratee, context);
-    return pluck(map(obj, function(value, key, list) {
-      return {
-        value: value,
-        index: index++,
-        criteria: iteratee(value, key, list)
-      };
-    }).sort(function(left, right) {
-      var a = left.criteria;
-      var b = right.criteria;
-      if (a !== b) {
-        if (a > b || a === void 0) return 1;
-        if (a < b || b === void 0) return -1;
-      }
-      return left.index - right.index;
-    }), 'value');
-  }
-
-  // An internal function used for aggregate "group by" operations.
-  function group(behavior, partition) {
-    return function(obj, iteratee, context) {
-      var result = partition ? [[], []] : {};
-      iteratee = cb(iteratee, context);
-      each(obj, function(value, index) {
-        var key = iteratee(value, index, obj);
-        behavior(result, value, key);
-      });
-      return result;
-    };
-  }
-
-  // Groups the object's values by a criterion. Pass either a string attribute
-  // to group by, or a function that returns the criterion.
-  var groupBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key].push(value); else result[key] = [value];
-  });
-
-  // Indexes the object's values by a criterion, similar to `_.groupBy`, but for
-  // when you know that your index values will be unique.
-  var indexBy = group(function(result, value, key) {
-    result[key] = value;
-  });
-
-  // Counts instances of an object that group by a certain criterion. Pass
-  // either a string attribute to count by, or a function that returns the
-  // criterion.
-  var countBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key]++; else result[key] = 1;
-  });
-
-  // Split a collection into two arrays: one whose elements all pass the given
-  // truth test, and one whose elements all do not pass the truth test.
-  var partition = group(function(result, value, pass) {
-    result[pass ? 0 : 1].push(value);
-  }, true);
-
-  // Safely create a real, live array from anything iterable.
-  var reStrSymbol = /[^\ud800-\udfff]|[\ud800-\udbff][\udc00-\udfff]|[\ud800-\udfff]/g;
-  function toArray(obj) {
-    if (!obj) return [];
-    if (isArray(obj)) return slice.call(obj);
-    if (isString(obj)) {
-      // Keep surrogate pair characters together.
-      return obj.match(reStrSymbol);
-    }
-    if (isArrayLike(obj)) return map(obj, identity);
-    return values(obj);
-  }
-
-  // Return the number of elements in a collection.
-  function size(obj) {
-    if (obj == null) return 0;
-    return isArrayLike(obj) ? obj.length : keys(obj).length;
-  }
-
-  // Internal `_.pick` helper function to determine whether `key` is an enumerable
-  // property name of `obj`.
-  function keyInObj(value, key, obj) {
-    return key in obj;
-  }
-
-  // Return a copy of the object only containing the allowed properties.
-  var pick = restArguments(function(obj, keys) {
-    var result = {}, iteratee = keys[0];
-    if (obj == null) return result;
-    if (isFunction$1(iteratee)) {
-      if (keys.length > 1) iteratee = optimizeCb(iteratee, keys[1]);
-      keys = allKeys(obj);
-    } else {
-      iteratee = keyInObj;
-      keys = flatten$1(keys, false, false);
-      obj = Object(obj);
-    }
-    for (var i = 0, length = keys.length; i < length; i++) {
-      var key = keys[i];
-      var value = obj[key];
-      if (iteratee(value, key, obj)) result[key] = value;
-    }
-    return result;
-  });
-
-  // Return a copy of the object without the disallowed properties.
-  var omit = restArguments(function(obj, keys) {
-    var iteratee = keys[0], context;
-    if (isFunction$1(iteratee)) {
-      iteratee = negate(iteratee);
-      if (keys.length > 1) context = keys[1];
-    } else {
-      keys = map(flatten$1(keys, false, false), String);
-      iteratee = function(value, key) {
-        return !contains(keys, key);
-      };
-    }
-    return pick(obj, iteratee, context);
-  });
-
-  // Returns everything but the last entry of the array. Especially useful on
-  // the arguments object. Passing **n** will return all the values in
-  // the array, excluding the last N.
-  function initial(array, n, guard) {
-    return slice.call(array, 0, Math.max(0, array.length - (n == null || guard ? 1 : n)));
-  }
-
-  // Get the first element of an array. Passing **n** will return the first N
-  // values in the array. The **guard** check allows it to work with `_.map`.
-  function first(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[0];
-    return initial(array, array.length - n);
-  }
-
-  // Returns everything but the first entry of the `array`. Especially useful on
-  // the `arguments` object. Passing an **n** will return the rest N values in the
-  // `array`.
-  function rest(array, n, guard) {
-    return slice.call(array, n == null || guard ? 1 : n);
-  }
-
-  // Get the last element of an array. Passing **n** will return the last N
-  // values in the array.
-  function last(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[array.length - 1];
-    return rest(array, Math.max(0, array.length - n));
-  }
-
-  // Trim out all falsy values from an array.
-  function compact(array) {
-    return filter(array, Boolean);
-  }
-
-  // Flatten out an array, either recursively (by default), or up to `depth`.
-  // Passing `true` or `false` as `depth` means `1` or `Infinity`, respectively.
-  function flatten(array, depth) {
-    return flatten$1(array, depth, false);
-  }
-
-  // Take the difference between one array and a number of other arrays.
-  // Only the elements present in just the first array will remain.
-  var difference = restArguments(function(array, rest) {
-    rest = flatten$1(rest, true, true);
-    return filter(array, function(value){
-      return !contains(rest, value);
-    });
-  });
-
-  // Return a version of the array that does not contain the specified value(s).
-  var without = restArguments(function(array, otherArrays) {
-    return difference(array, otherArrays);
-  });
-
-  // Produce a duplicate-free version of the array. If the array has already
-  // been sorted, you have the option of using a faster algorithm.
-  // The faster algorithm will not work with an iteratee if the iteratee
-  // is not a one-to-one function, so providing an iteratee will disable
-  // the faster algorithm.
-  function uniq(array, isSorted, iteratee, context) {
-    if (!isBoolean(isSorted)) {
-      context = iteratee;
-      iteratee = isSorted;
-      isSorted = false;
-    }
-    if (iteratee != null) iteratee = cb(iteratee, context);
-    var result = [];
-    var seen = [];
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var value = array[i],
-          computed = iteratee ? iteratee(value, i, array) : value;
-      if (isSorted && !iteratee) {
-        if (!i || seen !== computed) result.push(value);
-        seen = computed;
-      } else if (iteratee) {
-        if (!contains(seen, computed)) {
-          seen.push(computed);
-          result.push(value);
-        }
-      } else if (!contains(result, value)) {
-        result.push(value);
-      }
-    }
-    return result;
-  }
-
-  // Produce an array that contains the union: each distinct element from all of
-  // the passed-in arrays.
-  var union = restArguments(function(arrays) {
-    return uniq(flatten$1(arrays, true, true));
-  });
-
-  // Produce an array that contains every item shared between all the
-  // passed-in arrays.
-  function intersection(array) {
-    var result = [];
-    var argsLength = arguments.length;
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var item = array[i];
-      if (contains(result, item)) continue;
-      var j;
-      for (j = 1; j < argsLength; j++) {
-        if (!contains(arguments[j], item)) break;
-      }
-      if (j === argsLength) result.push(item);
-    }
-    return result;
-  }
-
-  // Complement of zip. Unzip accepts an array of arrays and groups
-  // each array's elements on shared indices.
-  function unzip(array) {
-    var length = array && max(array, getLength).length || 0;
-    var result = Array(length);
-
-    for (var index = 0; index < length; index++) {
-      result[index] = pluck(array, index);
-    }
-    return result;
-  }
-
-  // Zip together multiple lists into a single array -- elements that share
-  // an index go together.
-  var zip = restArguments(unzip);
-
-  // Converts lists into objects. Pass either a single array of `[key, value]`
-  // pairs, or two parallel arrays of the same length -- one of keys, and one of
-  // the corresponding values. Passing by pairs is the reverse of `_.pairs`.
-  function object(list, values) {
-    var result = {};
-    for (var i = 0, length = getLength(list); i < length; i++) {
-      if (values) {
-        result[list[i]] = values[i];
-      } else {
-        result[list[i][0]] = list[i][1];
-      }
-    }
-    return result;
-  }
-
-  // Generate an integer Array containing an arithmetic progression. A port of
-  // the native Python `range()` function. See
-  // [the Python documentation](https://docs.python.org/library/functions.html#range).
-  function range(start, stop, step) {
-    if (stop == null) {
-      stop = start || 0;
-      start = 0;
-    }
-    if (!step) {
-      step = stop < start ? -1 : 1;
-    }
-
-    var length = Math.max(Math.ceil((stop - start) / step), 0);
-    var range = Array(length);
-
-    for (var idx = 0; idx < length; idx++, start += step) {
-      range[idx] = start;
-    }
-
-    return range;
-  }
-
-  // Chunk a single array into multiple arrays, each containing `count` or fewer
-  // items.
-  function chunk(array, count) {
-    if (count == null || count < 1) return [];
-    var result = [];
-    var i = 0, length = array.length;
-    while (i < length) {
-      result.push(slice.call(array, i, i += count));
-    }
-    return result;
-  }
-
-  // Helper function to continue chaining intermediate results.
-  function chainResult(instance, obj) {
-    return instance._chain ? _$1(obj).chain() : obj;
-  }
-
-  // Add your own custom functions to the Underscore object.
-  function mixin(obj) {
-    each(functions(obj), function(name) {
-      var func = _$1[name] = obj[name];
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diff --git a/v0.3.0/_static/underscore.js b/v0.3.0/_static/underscore.js
deleted file mode 100644
index cf177d428..000000000
--- a/v0.3.0/_static/underscore.js
+++ /dev/null
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-<h1>Examples<a class="headerlink" href="#examples" title="Permalink to this heading">¶</a></h1>
-<p>A number of examples are present in the <a class="reference external" href="https://github.com/arfc/saltproc/tree/master/examples">examples directory</a> provided with the source code.</p>
-<p>Transatomic Power Molten Salt Reactor example can be run with:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span> /path/to/saltproc
-python saltproc -i examples/tap/tap_main.json
-</pre></div>
-</div>
-<p>In the example above, <code class="docutils literal notranslate"><span class="pre">path/to/saltproc</span></code> is, of course, the path to the main
-saltproc directory, containing <code class="docutils literal notranslate"><span class="pre">setup.py</span></code>. The <code class="docutils literal notranslate"><span class="pre">tap_main.json</span></code> is the main
-Saltproc input file, which contains paths to Serpent input file
-(<code class="docutils literal notranslate"><span class="pre">tap.serpent</span></code>), DOT-file with reprocessing scheme (<code class="docutils literal notranslate"><span class="pre">tap.dot</span></code>), and
-reprocessing system components’ detailed description (<code class="docutils literal notranslate"><span class="pre">tap_objects.json</span></code>).</p>
-<p>Similarly, Molten Salt Breeder Reactor example can be run with:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python saltproc -i examples/msbr/msbr_main.json
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- <a href="#_"><strong>_</strong></a>
- | <a href="#A"><strong>A</strong></a>
- | <a href="#C"><strong>C</strong></a>
- | <a href="#D"><strong>D</strong></a>
- | <a href="#E"><strong>E</strong></a>
- | <a href="#G"><strong>G</strong></a>
- | <a href="#H"><strong>H</strong></a>
- | <a href="#I"><strong>I</strong></a>
- | <a href="#K"><strong>K</strong></a>
- | <a href="#L"><strong>L</strong></a>
- | <a href="#M"><strong>M</strong></a>
- | <a href="#P"><strong>P</strong></a>
- | <a href="#Q"><strong>Q</strong></a>
- | <a href="#R"><strong>R</strong></a>
- | <a href="#S"><strong>S</strong></a>
- | <a href="#T"><strong>T</strong></a>
- | <a href="#W"><strong>W</strong></a>
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-</div>
-<h2 id="_">_</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">__add__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">__deepcopy__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">__eq__() (saltproc.materialflow.Materialflow method)</a>
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-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.__init__">__init__() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-        <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">(saltproc.materialflow.Materialflow method)</a>
-</li>
-        <li><a href="src/saltproc.process.html#saltproc.process.Process.__init__">(saltproc.process.Process method)</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">(saltproc.reactor.Reactor method)</a>
-</li>
-        <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.__init__">(saltproc.separator.Separator method)</a>
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-        <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">(saltproc.simulation.Simulation method)</a>
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-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">(saltproc.sparger.Sparger method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">__rmul__() (saltproc.materialflow.Materialflow method)</a>
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-</tr></table>
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-<h2 id="A">A</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.area">area (saltproc.sparger.Sparger attribute)</a>
-</li>
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-</tr></table>
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-<h2 id="C">C</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.calc_rem_efficiency">calc_rem_efficiency() (saltproc.process.Process method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.separator.html#id0">(saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency">[1]</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#id0">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par">change_sim_par() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">check_mass_conservation() (saltproc.process.Process method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.check_restart">check_restart() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">check_switch_geo_trigger() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">copy_pymat_attrs() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile">create_iter_matfile() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
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-<h2 id="D">D</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.db">db (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.db">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.deltap">deltap (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode">Depcode (class in saltproc.depcode)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent">DepcodeSerpent (class in saltproc.depcode)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id1">description() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.description">[1]</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id1">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.sparger.html#id2">diffusivity (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.diffusivity">[1]</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.do">do (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.dp">dp (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.dp">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="E">E</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id2">eff() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.eff">[1]</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id3">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[1]</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id4">eps() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[1]</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#id5">exp_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.exp_const">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="G">G</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id6">gas_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.gas_const">[1]</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">get_mass() (saltproc.materialflow.Materialflow method)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name">get_nuc_name() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_tra_or_dec">get_tra_or_dec() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="H">H</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id7">h_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.h_const">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="I">I</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">insert_path_to_geometry() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="K">K</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id3">k (saltproc.separator.Separator attribute)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.k">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="L">L</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.length">length (saltproc.sparger.Sparger attribute)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="M">M</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">Materialflow (class in saltproc.materialflow)</a>
-</li>
-      <li>
-    module
-
-      <ul>
-        <li><a href="src/saltproc.html#module-saltproc">saltproc</a>
-</li>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">saltproc.app</a>
-</li>
-        <li><a href="src/saltproc.depcode.html#module-saltproc.depcode">saltproc.depcode</a>
-</li>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">saltproc.materialflow</a>
-</li>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">saltproc.process</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">saltproc.reactor</a>
-</li>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">saltproc.separator</a>
-</li>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">saltproc.simulation</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">saltproc.sparger</a>
-</li>
-        <li><a href="src/saltproc.tests.html#module-saltproc.tests">saltproc.tests</a>
-</li>
-        <li><a href="src/saltproc.tests.test_app.html#module-saltproc.tests.test_app">saltproc.tests.test_app</a>
-</li>
-        <li><a href="src/saltproc.tests.test_depcode.html#module-saltproc.tests.test_depcode">saltproc.tests.test_depcode</a>
-</li>
-        <li><a href="src/saltproc.tests.test_materialflow.html#module-saltproc.tests.test_materialflow">saltproc.tests.test_materialflow</a>
-</li>
-        <li><a href="src/saltproc.tests.test_process.html#module-saltproc.tests.test_process">saltproc.tests.test_process</a>
-</li>
-        <li><a href="src/saltproc.tests.test_separator.html#module-saltproc.tests.test_separator">saltproc.tests.test_separator</a>
-</li>
-        <li><a href="src/saltproc.tests.test_simulation.html#module-saltproc.tests.test_simulation">saltproc.tests.test_simulation</a>
-</li>
-        <li><a href="src/saltproc.tests.test_sparger.html#module-saltproc.tests.test_sparger">saltproc.tests.test_sparger</a>
-</li>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">saltproc.version</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="P">P</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.parse_arguments">parse_arguments() (in module saltproc.app)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">print_attr() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process">Process (class in saltproc.process)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="Q">Q</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_he">q_he (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_he">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_salt">q_salt (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_salt">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="R">R</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor">Reactor (class in saltproc.reactor)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp">read_dep_comp() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info">read_depcode_info() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param">read_depcode_step_param() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_template">read_depcode_template() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_dot">read_dot() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_feeds_from_input">read_feeds_from_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">read_k_eds_delta() (saltproc.simulation.Simulation method)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_main_input">read_main_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_processes_from_input">read_processes_from_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.refill">refill() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.rem_elements">rem_elements() (saltproc.process.Process method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">replace_burnup_parameters() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.reprocessing">reprocessing() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.run">run() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode">run_depcode() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.runsim_no_reproc">runsim_no_reproc() (saltproc.simulation.Simulation method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="S">S</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc
-
-      <ul>
-        <li><a href="src/saltproc.html#module-saltproc">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.app
-
-      <ul>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.depcode
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#module-saltproc.depcode">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.materialflow
-
-      <ul>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.process
-
-      <ul>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.reactor
-
-      <ul>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.separator
-
-      <ul>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.simulation
-
-      <ul>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.sparger
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests
-
-      <ul>
-        <li><a href="src/saltproc.tests.html#module-saltproc.tests">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_app
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_app.html#module-saltproc.tests.test_app">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_depcode
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_depcode.html#module-saltproc.tests.test_depcode">module</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc.tests.test_materialflow
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-      <ul>
-        <li><a href="src/saltproc.tests.test_materialflow.html#module-saltproc.tests.test_materialflow">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_process
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_process.html#module-saltproc.tests.test_process">module</a>
-</li>
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-      <li>
-    saltproc.tests.test_separator
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_separator.html#module-saltproc.tests.test_separator">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_simulation
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_simulation.html#module-saltproc.tests.test_simulation">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_sparger
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_sparger.html#module-saltproc.tests.test_sparger">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.version
-
-      <ul>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">module</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">scale_matflow() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator">Separator (class in saltproc.separator)</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#id8">sherwood() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[1]</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation">Simulation (class in saltproc.simulation)</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger">Sparger (class in saltproc.sparger)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.sss_meta_zzz">sss_meta_zzz() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">store_after_repr() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">store_mat_data() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">store_run_init_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">store_run_step_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.switch_to_next_geometry">switch_to_next_geometry() (saltproc.simulation.Simulation method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
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-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.temp_room">temp_room (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id9">(saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_room">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_salt">temp_salt (saltproc.sparger.Sparger attribute)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par">test_change_sim_par() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs">test_copy_pymat_attrs() (in module saltproc.tests.test_materialflow)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile">test_create_iter_matfile() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass">test_get_mass() (in module saltproc.tests.test_materialflow)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name">test_get_nuc_name() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_tra_or_dec">test_get_tra_or_dec() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry">test_insert_path_to_geometry() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp">test_read_dep_comp() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info">test_read_depcode_info() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param">test_read_depcode_step_param() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_template">test_read_depcode_template() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot">test_read_dot() (in module saltproc.tests.test_app)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input">test_read_feeds_from_input() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta">test_read_k_eds_delta() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input">test_read_main_input() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input">test_read_processes_from_input() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill">test_refill() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements">test_rem_elements() (in module saltproc.tests.test_process)</a>
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements">(in module saltproc.tests.test_separator)</a>
-</li>
-        <li><a href="src/saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements">(in module saltproc.tests.test_sparger)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters">test_replace_burnup_parameters() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing">test_reprocessing() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow">test_scale_matflow() (in module saltproc.tests.test_materialflow)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_sss_meta_zzz">test_sss_meta_zzz() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_switch_to_next_geometry">test_switch_to_next_geometry() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input">test_write_depcode_input() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file">test_write_mat_file() (in module saltproc.tests.test_depcode)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="W">W</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.write_depcode_input">write_depcode_input() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_depcode_input">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file">write_mat_file() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file">(saltproc.depcode.DepcodeSerpent method)</a>
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-             
-  <section id="saltproc">
-<h1>SaltProc<a class="headerlink" href="#saltproc" title="Permalink to this heading">¶</a></h1>
-<p><strong>SaltProc</strong> is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the Serpent 2 Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
-calculation.</p>
-<p><strong>SaltProc</strong> welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including <a class="reference external" href="http://pyne.io/">pyne</a>, <a class="reference external" href="http://numpy.org">numpy</a>, <a class="reference external" href="http://matplotlib.org">matplotlib</a>,
-<a class="reference external" href="http://networkx.github.io">networkx</a>, and <a class="reference external" href="https://pydotplus.readthedocs.io/">pydotplus</a>.</p>
-<section id="documentation">
-<h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
-<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
-<li class="toctree-l1"><a class="reference internal" href="src/index.html">SaltProc API</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
-</ul>
-</div>
-</section>
-<section id="indices-and-tables">
-<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
-<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
-<li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
-</ul>
-</section>
-<section id="citation">
-<h2>Citation<a class="headerlink" href="#citation" title="Permalink to this heading">¶</a></h2>
-<p>Up-to-date information about citing SaltProc can be found within the <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">citation</a>
-file.</p>
-</section>
-<section id="get-in-touch">
-<h2>Get in touch<a class="headerlink" href="#get-in-touch" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>Please report bugs, suggest feature ideas, and browse the source code <a class="reference external" href="http://github.com/arfc/saltproc">on GitHub</a>.</p></li>
-<li><p>There, new contributors can also find <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CONTRIBUTING.md">a guide to contributing</a>.</p></li>
-<li><p>Good start point for new contributors is <a class="reference external" href="https://github.com/arfc/saltproc/issues?q=is%3Aopen+is%3Aissue">current open issues</a>.</p></li>
-</ul>
-</section>
-<section id="acknowledgment">
-<h2>Acknowledgment<a class="headerlink" href="#acknowledgment" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc uses <a class="reference external" href="https://github.com/uwescience/shablona">Shablona</a> template which is universal solution for small
-scientific python projects developed at University of Washington <a class="reference external" href="https://escience.washington.edu">eScience Insititute</a>.</p>
-</section>
-<section id="license">
-<h2>License<a class="headerlink" href="#license" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc is available under the open source <a class="reference external" href="https://raw.githubusercontent.com/arfc/saltproc/master/LICENSE">BSD 3-clause License</a>.</p>
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-  <section id="installation">
-<h1>Installation<a class="headerlink" href="#installation" title="Permalink to this heading">¶</a></h1>
-<p>SaltProc has the following dependencies:</p>
-<blockquote>
-<div><ol class="arabic simple">
-<li><p><a class="reference external" href="http://python.org">Python</a> (&gt;=3.5)</p></li>
-<li><p><a class="reference external" href="http://montecarlo.vtt.fi">Serpent</a> (&gt;=2.1.31)</p></li>
-<li><p><a class="reference external" href="http://pyne.io">PyNE</a> (&gt;=0.5.11)</p></li>
-<li><p><a class="reference external" href="http://numpy.org">NumPy</a> (&gt;=1.14.0)</p></li>
-<li><p><a class="reference external" href="http://pytables.org">PyTables</a></p></li>
-<li><p><a class="reference external" href="http://networkx.github.io">NetworkX</a></p></li>
-<li><p><a class="reference external" href="https://pydotplus.readthedocs.io/">PyDotPlus</a></p></li>
-</ol>
-</div></blockquote>
-<p>Optional Depenendencies:</p>
-<blockquote>
-<div><ol class="arabic simple">
-<li><p><a class="reference external" href="http://matplotlib.org">matplotlib</a></p></li>
-<li><p><a class="reference external" href="http://vitables.org">ViTables</a></p></li>
-</ol>
-</div></blockquote>
-<p>Most of the dependencies are readily available through package managers.
-Once all the dependencies are installed, SaltProc can be installed.
-Clone the source from the SaltProc repository from <a class="reference external" href="http://github.com/arfc/saltproc">GitHub</a>.
-Then run the following commands from the directory above cloned repository:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone https://github.com/arfc/saltproc.git
-<span class="nb">cd</span> saltproc/
-python setup.py install --user
-</pre></div>
-</div>
-<p>Please let us know if you run into trouble.</p>
-<section id="cross-section-configuration">
-<h2>Cross Section Configuration<a class="headerlink" href="#cross-section-configuration" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc can use any cross section library that Serpent can. See <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries">this page on the Serpent wiki</a> for information on how to configure the libraries.</p>
-</section>
-<section id="testing">
-<h2>Testing<a class="headerlink" href="#testing" title="Permalink to this heading">¶</a></h2>
-<p>The SaltProc test suite has two types of tests: unit tests and regression tests.
-The unit tests check that the individual functions and classes of the <code class="docutils literal notranslate"><span class="pre">saltproc</span></code>
-module return the correct type of variables and correct values, where applicable.
-The regression tests run a full SaltProc simulation and check the final result
-with a precalculated result.
-The integration tests require the <a class="reference external" href="https://www.oecd-nea.org/dbforms/data/eva/evatapes/jeff_31/JEFF312/">JEFF 3.1.2 cross section library</a> as well
-as neutron induces and spontaneous fission product yield data from JEFF 3.3.
-The publicly available versions of JEFF 3.1.2  cannot be used with Serpent right
-out of the box due to <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries">Serpent’s notation for isomeric states</a>. The scripts in
-<code class="docutils literal notranslate"><span class="pre">scripts/xsdata</span></code> download all necessary libraries and perform all the necessary processing on them for use in Serpent 2.
-We recommend using them for your convenience.
-See the <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/scripts/README.md">README</a> for more information.</p>
-<p>To run the tests, execute:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pytest saltproc/
-</pre></div>
-</div>
-<p>from the root directory of SaltProc. If you just want to run the unit tests, execute</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pytest --ignore saltproc/tests/integration_tests saltproc/
-</pre></div>
-</div>
-</section>
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-  <section id="overview">
-<h1>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h1>
-<p>SaltProc couples directly with the Monte Carlo neutron transport code Serpent 2
-and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:</p>
-<ul class="simple">
-<li><p>neutron poison removal with user-defined efficiency,</p></li>
-<li><p>make-up mass loss by fresh fuel injection,</p></li>
-<li><p>reactivity control by adjusting fuel feed rate or geometry change,</p></li>
-<li><p>can model any reactor design,</p></li>
-<li><p>potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).</p></li>
-</ul>
-<section id="how-saltproc-works">
-<h2>How SaltProc works<a class="headerlink" href="#how-saltproc-works" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc is a driver for Serpent to simulate online fuel salt reprocessing for
-Molten Salt Reactors. It performs following major functions:</p>
-<blockquote>
-<div><ul class="simple">
-<li><p>runs SERPENT</p></li>
-<li><p>parses and stores Serpent output data in HDF5</p></li>
-<li><p>modifies parsed material composition (<cite>reprocesses</cite>)</p></li>
-<li><p>creates Serpent input file</p></li>
-</ul>
-</div></blockquote>
-<p>The code logic flow is the following:</p>
-<blockquote>
-<div><ol class="arabic simple">
-<li><p>Runs Serpent (<cite>saltproc.depcode.run_depcode()</cite>)</p></li>
-<li><p>Parses through the output <cite>*_dep.m</cite> file and creates PyNE Material object
-for each burnable material.</p></li>
-<li><p>Processes Fuel (<cite>saltproc.app.reprocessing()</cite> and <cite>saltproc.refill</cite>):</p></li>
-</ol>
-<blockquote>
-<div><ul class="simple">
-<li><p>Passes fuel composition throughout Processes objects (reprocessing system
-components) to remove poisons with specific efficiency.</p></li>
-<li><p>Adds back fissile and/or fertile material to make-up loss of material.</p></li>
-</ul>
-</div></blockquote>
-<ol class="arabic simple" start="4">
-<li><p>Records data:</p></li>
-</ol>
-<blockquote>
-<div><ul class="simple">
-<li><p>Depleted fuel composition (<cite>materials/fuel/before_reproc</cite> table in HDF5)</p></li>
-<li><p>Reprocessed fuel composition (<cite>materials/fuel/after_reproc</cite> table in
-HDF5)</p></li>
-<li><p>Multiplication factor at the beginning and at the end of depletion step
-(<cite>simulation_parameters/keff_bds</cite>, <cite>simulation_parameters/keff_eds</cite>)</p></li>
-<li><p>Effective Delayed Neutron Fraction (<span class="math notranslate nohighlight">\(\beta_{eff}\)</span>) at the end of
-the depletion step (<cite>simulation_parameters/beta_eff_eds</cite>)</p></li>
-<li><p>Waste and feed streams from each <cite>Process</cite> (<cite>materials/in_out_streams/</cite>)</p></li>
-</ul>
-</div></blockquote>
-<ol class="arabic simple" start="5">
-<li><p>Repeats 1-4.</p></li>
-</ol>
-</div></blockquote>
-</section>
-<section id="updates">
-<h2>Updates<a class="headerlink" href="#updates" title="Permalink to this heading">¶</a></h2>
-<p>March 2021:</p>
-<p>Besides the existing flexibility like fixed removal efficiency definition for
-each target isotope defined in the object input file, Saltproc code now
-comprises <cite>Sparging System package</cite> that calculates removal efficiencies for
-various target isotopes (i.e., Xe, Kr, and H). To enable this feature, use
-the <cite>“self”</cite> command in the input file in the <cite>“efficiency”</cite> object names of
-Sparger and Separator components. Each component can be employed separately.
-An example is given below. In the example, capacity and mass flow rate are in
-<cite>g/s</cite> unit while volume is in <cite>cm</cite><span class="math notranslate nohighlight">\(^3\)</span> unit.</p>
-<dl class="simple">
-<dt>“sparger”: { “capacity”: 9920000,</dt><dd><p>“efficiency”: “self”,
-“mass_flowrate”: 9920000,
-“volume”: 10000000 },</p>
-</dd>
-<dt>“entrainment_separator”: { “capacity”: 9920000,</dt><dd><p>“efficiency”: “self”,
-“mass_flowrate”: 9920000,
-“volume”: 11 }</p>
-</dd>
-</dl>
-</section>
-<section id="the-future">
-<h2>The Future<a class="headerlink" href="#the-future" title="Permalink to this heading">¶</a></h2>
-<p>A number of features will be implemented in SaltProc soon. Support of various
-depletion codes (e.g., OpenMC) will be added.</p>
-<div class="admonition warning">
-<p class="admonition-title">Warning</p>
-<p>SaltProc is a relatively new project and is still under heavy development.
-Although we will make our best effort to maintain compatibility with the
-current API, inevitably the API will change in future versions as SaltProc
-matures.</p>
-</div>
-</section>
-</section>
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-     <tr class="pcap"><td></td><td>&#160;</td><td></td></tr>
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-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.app.html#module-saltproc.app"><code class="xref">saltproc.app</code></a></td><td>
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-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.depcode.html#module-saltproc.depcode"><code class="xref">saltproc.depcode</code></a></td><td>
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-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.materialflow.html#module-saltproc.materialflow"><code class="xref">saltproc.materialflow</code></a></td><td>
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-       <a href="src/saltproc.process.html#module-saltproc.process"><code class="xref">saltproc.process</code></a></td><td>
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-       <td>&#160;&#160;&#160;
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-       <a href="src/saltproc.simulation.html#module-saltproc.simulation"><code class="xref">saltproc.simulation</code></a></td><td>
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-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.tests.test_materialflow.html#module-saltproc.tests.test_materialflow"><code class="xref">saltproc.tests.test_materialflow</code></a></td><td>
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-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.tests.test_process.html#module-saltproc.tests.test_process"><code class="xref">saltproc.tests.test_process</code></a></td><td>
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-       <td>&#160;&#160;&#160;
-       <a href="src/saltproc.tests.test_separator.html#module-saltproc.tests.test_separator"><code class="xref">saltproc.tests.test_separator</code></a></td><td>
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-       <a href="src/saltproc.tests.test_sparger.html#module-saltproc.tests.test_sparger"><code class="xref">saltproc.tests.test_sparger</code></a></td><td>
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-       <a href="src/saltproc.version.html#module-saltproc.version"><code class="xref">saltproc.version</code></a></td><td>
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\ No newline at end of file
diff --git a/v0.3.0/src/index.html b/v0.3.0/src/index.html
deleted file mode 100644
index 3900c5e8a..000000000
--- a/v0.3.0/src/index.html
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diff --git a/v0.3.0/src/saltproc.app.html b/v0.3.0/src/saltproc.app.html
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-           <div itemprop="articleBody">
-             
-  <section id="module-saltproc.app">
-<span id="saltproc-app-module"></span><h1>saltproc.app module<a class="headerlink" href="#module-saltproc.app" title="Permalink to this heading">¶</a></h1>
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.check_restart">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">check_restart</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#check_restart"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.check_restart" title="Permalink to this definition">¶</a></dt>
-<dd><p>If the user set <cite>Restart simulation from the step when it stopped?</cite>
-for <cite>False</cite> clean out iteration files and database from previous run.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>restart_flag</strong> (<em>bool</em>) – Is the current simulation restarted?</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.parse_arguments">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">parse_arguments</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#parse_arguments"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.parse_arguments" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses arguments from command line.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><ul class="simple">
-<li><p><strong>n</strong> (<em>int</em>) – Number of nodes for use in Serpent simulation.</p></li>
-<li><p><strong>d</strong> (<em>int</em>) – Number of cores for use in Serpent simulation.</p></li>
-<li><p><strong>i</strong> (<em>str</em>) – Path and name of main SaltProc input file (json format).</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_dot">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dot_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_dot" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads directed graph that describes fuel reprocessing system structure
-from <cite>*.dot</cite> file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>dot_file</strong> (<em>str</em>) – Path to <cite>.dot</cite> file with reprocessing system structure.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>mat_name</strong> (<em>str</em>) – Name of burnable material which reprocessing scheme described in <cite>.dot</cite>
-file.</p></li>
-<li><p><strong>paths_list</strong> (<em>list</em>) – List of lists containing all possible paths between <cite>core_outlet</cite> and
-<cite>core_inlet</cite>.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_feeds_from_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_feeds_from_input</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_feeds_from_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_feeds_from_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">feed</span></code> data from <cite>.json</cite> file with <cite>Materialflow</cite> objects
-description. Then returns dictionary of <cite>Materialflow</cite> objects describing
-fresh fuel feeds.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects with feeds.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties of feed.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_main_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_main_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">main_inp_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_main_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_main_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads main SaltProc input file (json format).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>main_inp_file</strong> (<em>str</em>) – Path to SaltProc main input file and name of this file.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_processes_from_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_processes_from_input</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_processes_from_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_processes_from_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">removal</span></code> data from <cite>.json</cite> file with <cite>Process</cite> objects
-description. Then returns dictionary of <cite>Process</cite> objects describing
-extraction process efficiency for each target chemical element.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>mats</strong> – Dictionary that contains <cite>Process</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Process</cite> object holding extraction process parameters.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to Process</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.refill">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">refill</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extracted_mass</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#refill"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.refill" title="Permalink to this definition">¶</a></dt>
-<dd><p>Makes up material loss in removal processes by adding fresh fuel.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mat</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object after performing all removals.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>extracted_mass</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Mass removed as waste in reprocessing function for each material.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>waste</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Process name.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>refilled_mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object after adding fresh fuel.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.reprocessing">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">reprocessing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mat</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#reprocessing"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.reprocessing" title="Permalink to this definition">¶</a></dt>
-<dd><p>Applies reprocessing scheme to burnable materials.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects with burnable material
-data right after irradiation in the core.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul>
-<li><p><strong>waste</strong> (<em>dict of str to Materialflow</em>) –</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Process name.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</li>
-<li><p><strong>extracted_mass</strong> (<em>dict of str to Materialflow</em>) –</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Mass removed as waste in reprocessing function for each material
-(g).</p>
-</dd>
-</dl>
-</li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.run">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.run" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inititializes main run.</p>
-</dd></dl>
-
-</section>
-
-
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-             
-  <section id="module-saltproc.depcode">
-<span id="saltproc-depcode-module"></span><h1>saltproc.depcode module<a class="headerlink" href="#module-saltproc.depcode" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.depcode.</span></span><span class="sig-name descname"><span class="pre">Depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">ABC</span></code></p>
-<p>Abstract class for interfacing with monte-carlo particle transport
-codes. Contains information about input, output, geometry, and template
-files for running depletion simulations. Also contains neutron
-population, active, and inactive cycles. Contains methods to read template
-and output files, and write new input files for the depletion code.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Depcode object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>codename</strong> (<em>str</em>) – Name of depletion code.</p></li>
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to depletion code executable.</p></li>
-<li><p><strong>template_path</strong> (<em>str</em>) – Path to user input file for depletion code.</p></li>
-<li><p><strong>input_path</strong> (<em>str</em>) – Name of input file for depletion code rerunning.</p></li>
-<li><p><strong>iter_matfile</strong> (<em>str</em>) – Name of iterative, rewritable material file for depletion code
-rerunning. This file is modified during  the simulation.</p></li>
-<li><p><strong>geo_file</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-<li><p><strong>npop</strong> (<em>int</em><em>, </em><em>optional</em>) – Size of neutron population per cycle for Monte Carlo.</p></li>
-<li><p><strong>active_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of active cycles.</p></li>
-<li><p><strong>inactive_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of inactive cycles.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.read_dep_comp">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_dep_comp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dep_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.read_dep_comp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.read_dep_comp" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the depleted material data from the depcode simulation
-and returns a dictionary with a <cite>Materialflow</cite> object for each
-burnable material.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>dep_file</strong> (<em>str</em>) – Path to file containing results of depletion simulation</p></li>
-<li><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – Controls at which moment in the depletion step to read the data.
-If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.run_depcode">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">run_depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cores</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.run_depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.run_depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs depletion code as a subprocess with the given parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for depletion code run.</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for depletion code run.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.write_depcode_input">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_depcode_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">temp</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inp</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.write_depcode_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.write_depcode_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes prepared data into depletion code input file(s).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>temp</strong> (<em>str</em>) – Path to depletion code template file</p></li>
-<li><p><strong>inp</strong> (<em>str</em>) – Path to input file for depletion code rerunning</p></li>
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.write_mat_file">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_mat_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dep_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mat_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.write_mat_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.write_mat_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes the iteration input file containing the burnable materials
-composition used in depletion runs and updated after each depletion
-step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>dep_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>mat_file</strong> (<em>str</em>) – Path to file containing burnable materials composition.</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.depcode.</span></span><span class="sig-name descname"><span class="pre">DepcodeSerpent</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">exec_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sss2'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'reactor.serpent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_reactor'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_mat'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="#saltproc.depcode.Depcode" title="saltproc.depcode.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a></p>
-<p>Class contains information about input, output, geometry, and
-template files for running Serpent2 depletion simulations.
-Also contains neutrons population, active, and inactive cycles.
-Contains methods to read template and output files,
-write new input files for Serpent2.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">exec_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sss2'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'reactor.serpent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_reactor'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_mat'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the DepcodeSerpent object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to Serpent2 executable.</p></li>
-<li><p><strong>template_path</strong> (<em>str</em>) – Path to user input file for Serpent2.</p></li>
-<li><p><strong>input_path</strong> (<em>str</em>) – Name of input file for Serpent2 rerunning.</p></li>
-<li><p><strong>iter_matfile</strong> (<em>str</em>) – Name of iterative, rewritable material file for Serpent2
-rerunning. This file is modified during  the simulation.</p></li>
-<li><p><strong>geo_file</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-<li><p><strong>npop</strong> (<em>int</em><em>, </em><em>optional</em>) – Size of neutron population per cycle for Monte Carlo.</p></li>
-<li><p><strong>active_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of active cycles.</p></li>
-<li><p><strong>inactive_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of inactive cycles.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.change_sim_par">
-<span class="sig-name descname"><span class="pre">change_sim_par</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.change_sim_par"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.change_sim_par" title="Permalink to this definition">¶</a></dt>
-<dd><p>Finds simulation parameters (neutron population, cycles) in the
-Serpent2 template file and change them to the parameters from the
-SaltProc input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s Serpent2 template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>input_data</strong> – List of strings containing Serpent2 input file with new
-simulation parameters.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.create_iter_matfile">
-<span class="sig-name descname"><span class="pre">create_iter_matfile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.create_iter_matfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.create_iter_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Finds <code class="docutils literal notranslate"><span class="pre">include</span></code> line with path to material file, copies content of
-this file to iteration material file, changes path in <code class="docutils literal notranslate"><span class="pre">include</span></code> line
-to newly created iteration material file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>input_data</strong> – List of strings containing modified user template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.get_nuc_name">
-<span class="sig-name descname"><span class="pre">get_nuc_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.get_nuc_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.get_nuc_name" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns nuclide name in human-readable notation: chemical symbol
-(one or two characters), dash, and the atomic weight. Lastly, if the
-nuclide is in metastable state, the letter <cite>m</cite> is concatenated with
-number of excited state. For example, <cite>Am-242m1</cite>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Name of nuclide in Serpent2 form. For instance, <cite>Am-242m</cite>.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>nuc_name</strong> (<em>str</em>) – Name of nuclide in human-readable notation (<cite>Am-242m1</cite>).</p></li>
-<li><p><strong>nuc_zzaaam</strong> (<em>str</em>) – Name of nuclide in <cite>zzaaam</cite> form (<cite>952421</cite>).</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.get_tra_or_dec">
-<span class="sig-name descname"><span class="pre">get_tra_or_dec</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.get_tra_or_dec"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.get_tra_or_dec" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns the isotopes map to transform isotope <cite>zzaaam</cite> code to
-Serpent2. Uses Serpent2 <cite>*.out</cite> file with list of all isotopes in
-simulation.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>input_file</strong> (<em>str</em>) – Serpent2 input file name and path.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>isotope_map</strong> – Contains mapping for isotopes names from <cite>zzaaam</cite> to Serpent2 name
-imported from Serpent2 ouput file:</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The key is nuclide name in <cite>zzaaam</cite> format. For example,
-<cite>922350</cite> or <cite>982510</cite>.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Serpent2-oriented name. For instance, 92235.09c for transport
-isotope or 982510 for decay only isotope).</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">
-<span class="sig-name descname"><span class="pre">insert_path_to_geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.insert_path_to_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts <code class="docutils literal notranslate"><span class="pre">include</span> <span class="pre">&lt;first_geometry_file&gt;</span></code> line on the 6th line of
-Serpent2 input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>template_data</strong> – List of strings containing modified path to geometry
-in user’s template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_dep_comp">
-<span class="sig-name descname"><span class="pre">read_dep_comp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_dep_comp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_dep_comp" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the Serpent2 <cite>*_dep.m</cite> file and returns a dictionary with
-a <cite>Materialflow</cite> object for each burnable material.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>input_file</strong> (<em>str</em>) – Path to Serpent2 input file.</p></li>
-<li><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – Controls at which moment in the depletion step to read the data.
-If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_depcode_info">
-<span class="sig-name descname"><span class="pre">read_depcode_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_depcode_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_depcode_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses initial simulation info data from Serpent2 output and stores
-it in the <cite>DepcodeSerpent</cite> object’s <code class="docutils literal notranslate"><span class="pre">sim_info</span></code> attributes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_depcode_step_param">
-<span class="sig-name descname"><span class="pre">read_depcode_step_param</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_depcode_step_param"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_depcode_step_param" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses data from Serpent2 output for each step and stores it in
-<cite>DepcodeSerpent</cite> object’s <code class="docutils literal notranslate"><span class="pre">param</span></code> attributes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_depcode_template">
-<span class="sig-name descname"><span class="pre">read_depcode_template</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_depcode_template"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_depcode_template" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads prepared Serpent2 template (input)  file for use in
-other class functions that prepare the input file for multiple runs.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_path</strong> (<em>str</em>) – Path to user template file for depletion code.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>tempalate_data</strong> – List of strings containing user template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">
-<span class="sig-name descname"><span class="pre">replace_burnup_parameters</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">current_depstep_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.replace_burnup_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds or replaces the <code class="docutils literal notranslate"><span class="pre">set</span> <span class="pre">power</span> <span class="pre">P</span> <span class="pre">dep</span> <span class="pre">daystep</span> <span class="pre">DEPSTEP</span></code> line in
-the Serpent2 input file. This line defines depletion history and power
-levels with respect to the depletion step in the single run and
-activates depletion calculation mode.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user template file.</p></li>
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>current_depstep_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>template_data</strong> – List of strings containing modified in this function template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.run_depcode">
-<span class="sig-name descname"><span class="pre">run_depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cores</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.run_depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.run_depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs Serpent2 as a subprocess with the given parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for Serpent2 run (<cite>-omp</cite> flag in Serpent2).</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for Serpent2 run (<cite>-mpi</cite> flag in Serpent2).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.sss_meta_zzz">
-<span class="sig-name descname"><span class="pre">sss_meta_zzz</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.sss_meta_zzz"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.sss_meta_zzz" title="Permalink to this definition">¶</a></dt>
-<dd><p>Checks Serpent2-specific meta stable-flag for zzaaam. For instance,
-47310 instead of 471101 for <cite>Ag-110m1</cite>. Metastable isotopes represented
-with <cite>aaa</cite> started with <code class="docutils literal notranslate"><span class="pre">3</span></code>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Name of nuclide in Serpent2 form. For instance, <cite>47310</cite>.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>nuc_zzaam</strong> – Name of nuclide in <cite>zzaaam</cite> form (<cite>471101</cite>).</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.write_depcode_input">
-<span class="sig-name descname"><span class="pre">write_depcode_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">temp_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inp_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.write_depcode_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.write_depcode_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes prepared data into the depletion code input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>template_file</strong> (<em>str</em>) – Path to Serpent2 template file.</p></li>
-<li><p><strong>input_file</strong> (<em>str</em>) – Path to input file for Serpent2 rerunning.</p></li>
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.write_mat_file">
-<span class="sig-name descname"><span class="pre">write_mat_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dep_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mat_file</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.write_mat_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.write_mat_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes the iteration input file containing the burnable materials
-composition used in Serpent2 runs and updated after each depletion
-step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>dep_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>mat_file</strong> (<em>str</em>) – Path to file containing burnable materials composition.</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="saltproc-package">
-<h1>saltproc package<a class="headerlink" href="#saltproc-package" title="Permalink to this heading">¶</a></h1>
-<section id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.html">saltproc.tests package</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.html#submodules">Submodules</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_app.html">saltproc.tests.test_app module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot"><code class="docutils literal notranslate"><span class="pre">test_read_dot()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input"><code class="docutils literal notranslate"><span class="pre">test_read_main_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_processes_from_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill"><code class="docutils literal notranslate"><span class="pre">test_refill()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing"><code class="docutils literal notranslate"><span class="pre">test_reprocessing()</span></code></a></li>
-</ul>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_depcode.html">saltproc.tests.test_depcode module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par"><code class="docutils literal notranslate"><span class="pre">test_change_sim_par()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">test_create_iter_matfile()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name"><code class="docutils literal notranslate"><span class="pre">test_get_nuc_name()</span></code></a></li>
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-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">test_insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp"><code class="docutils literal notranslate"><span class="pre">test_read_dep_comp()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_info()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_template"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_template()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters"><code class="docutils literal notranslate"><span class="pre">test_replace_burnup_parameters()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_sss_meta_zzz"><code class="docutils literal notranslate"><span class="pre">test_sss_meta_zzz()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input"><code class="docutils literal notranslate"><span class="pre">test_write_depcode_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file"><code class="docutils literal notranslate"><span class="pre">test_write_mat_file()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_materialflow.html">saltproc.tests.test_materialflow module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">test_copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass"><code class="docutils literal notranslate"><span class="pre">test_get_mass()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow"><code class="docutils literal notranslate"><span class="pre">test_scale_matflow()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_process.html">saltproc.tests.test_process module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_separator.html">saltproc.tests.test_separator module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_simulation.html">saltproc.tests.test_simulation module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta"><code class="docutils literal notranslate"><span class="pre">test_read_k_eds_delta()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">test_switch_to_next_geometry()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_sparger.html">saltproc.tests.test_sparger module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.html#module-saltproc.tests">Module contents</a></li>
-</ul>
-</li>
-</ul>
-</div>
-</section>
-<section id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.app.html">saltproc.app module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.check_restart"><code class="docutils literal notranslate"><span class="pre">check_restart()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.parse_arguments"><code class="docutils literal notranslate"><span class="pre">parse_arguments()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_dot"><code class="docutils literal notranslate"><span class="pre">read_dot()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_main_input"><code class="docutils literal notranslate"><span class="pre">read_main_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">read_processes_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.refill"><code class="docutils literal notranslate"><span class="pre">refill()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.reprocessing"><code class="docutils literal notranslate"><span class="pre">reprocessing()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.depcode.html">saltproc.depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode"><code class="docutils literal notranslate"><span class="pre">Depcode</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.__init__"><code class="docutils literal notranslate"><span class="pre">Depcode.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp"><code class="docutils literal notranslate"><span class="pre">Depcode.read_dep_comp()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode"><code class="docutils literal notranslate"><span class="pre">Depcode.run_depcode()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.write_depcode_input"><code class="docutils literal notranslate"><span class="pre">Depcode.write_depcode_input()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file"><code class="docutils literal notranslate"><span class="pre">Depcode.write_mat_file()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.change_sim_par()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.create_iter_matfile()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.get_nuc_name()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_tra_or_dec"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.get_tra_or_dec()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_dep_comp()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_info()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_template"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_template()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.replace_burnup_parameters()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.run_depcode()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.sss_meta_zzz"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.sss_meta_zzz()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_depcode_input"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.write_depcode_input()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.write_mat_file()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.materialflow.html">saltproc.materialflow module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow"><code class="docutils literal notranslate"><span class="pre">Materialflow</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__add__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__deepcopy__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__eq__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__rmul__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">Materialflow.copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass"><code class="docutils literal notranslate"><span class="pre">Materialflow.get_mass()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr"><code class="docutils literal notranslate"><span class="pre">Materialflow.print_attr()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow"><code class="docutils literal notranslate"><span class="pre">Materialflow.scale_matflow()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.process.html">saltproc.process module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process"><code class="docutils literal notranslate"><span class="pre">Process</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.__init__"><code class="docutils literal notranslate"><span class="pre">Process.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Process.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.check_mass_conservation"><code class="docutils literal notranslate"><span class="pre">Process.check_mass_conservation()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.rem_elements"><code class="docutils literal notranslate"><span class="pre">Process.rem_elements()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.reactor.html">saltproc.reactor module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor"><code class="docutils literal notranslate"><span class="pre">Reactor</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor.__init__"><code class="docutils literal notranslate"><span class="pre">Reactor.__init__()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.separator.html">saltproc.separator module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator"><code class="docutils literal notranslate"><span class="pre">Separator</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_salt"><code class="docutils literal notranslate"><span class="pre">Separator.q_salt</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_he"><code class="docutils literal notranslate"><span class="pre">Separator.q_he</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.do"><code class="docutils literal notranslate"><span class="pre">Separator.do</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.dp"><code class="docutils literal notranslate"><span class="pre">Separator.dp</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.db"><code class="docutils literal notranslate"><span class="pre">Separator.db</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.deltap"><code class="docutils literal notranslate"><span class="pre">Separator.deltap</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.temp_room"><code class="docutils literal notranslate"><span class="pre">Separator.temp_room</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.k"><code class="docutils literal notranslate"><span class="pre">Separator.k</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.eff"><code class="docutils literal notranslate"><span class="pre">Separator.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.description"><code class="docutils literal notranslate"><span class="pre">Separator.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Separator.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.__init__"><code class="docutils literal notranslate"><span class="pre">Separator.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id0"><code class="docutils literal notranslate"><span class="pre">Separator.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id1"><code class="docutils literal notranslate"><span class="pre">Separator.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id2"><code class="docutils literal notranslate"><span class="pre">Separator.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#id3"><code class="docutils literal notranslate"><span class="pre">Separator.k</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.simulation.html">saltproc.simulation module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation"><code class="docutils literal notranslate"><span class="pre">Simulation</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.__init__"><code class="docutils literal notranslate"><span class="pre">Simulation.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger"><code class="docutils literal notranslate"><span class="pre">Simulation.check_switch_geo_trigger()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta"><code class="docutils literal notranslate"><span class="pre">Simulation.read_k_eds_delta()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.runsim_no_reproc"><code class="docutils literal notranslate"><span class="pre">Simulation.runsim_no_reproc()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr"><code class="docutils literal notranslate"><span class="pre">Simulation.store_after_repr()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data"><code class="docutils literal notranslate"><span class="pre">Simulation.store_mat_data()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info"><code class="docutils literal notranslate"><span class="pre">Simulation.store_run_init_info()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info"><code class="docutils literal notranslate"><span class="pre">Simulation.store_run_step_info()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.simulation.html#saltproc.simulation.Simulation.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">Simulation.switch_to_next_geometry()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.sparger.html">saltproc.sparger module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger"><code class="docutils literal notranslate"><span class="pre">Sparger</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.h_const"><code class="docutils literal notranslate"><span class="pre">Sparger.h_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.gas_const"><code class="docutils literal notranslate"><span class="pre">Sparger.gas_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.diffusivity"><code class="docutils literal notranslate"><span class="pre">Sparger.diffusivity</span></code></a></li>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.eps"><code class="docutils literal notranslate"><span class="pre">Sparger.eps()</span></code></a></li>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.sherwood"><code class="docutils literal notranslate"><span class="pre">Sparger.sherwood()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.description"><code class="docutils literal notranslate"><span class="pre">Sparger.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Sparger.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.__init__"><code class="docutils literal notranslate"><span class="pre">Sparger.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id0"><code class="docutils literal notranslate"><span class="pre">Sparger.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id1"><code class="docutils literal notranslate"><span class="pre">Sparger.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id2"><code class="docutils literal notranslate"><span class="pre">Sparger.diffusivity</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id3"><code class="docutils literal notranslate"><span class="pre">Sparger.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id4"><code class="docutils literal notranslate"><span class="pre">Sparger.eps()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id5"><code class="docutils literal notranslate"><span class="pre">Sparger.exp_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id6"><code class="docutils literal notranslate"><span class="pre">Sparger.gas_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id7"><code class="docutils literal notranslate"><span class="pre">Sparger.h_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id8"><code class="docutils literal notranslate"><span class="pre">Sparger.sherwood()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id9"><code class="docutils literal notranslate"><span class="pre">Sparger.temp_room</span></code></a></li>
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-  <section id="module-saltproc.materialflow">
-<span id="saltproc-materialflow-module"></span><h1>saltproc.materialflow module<a class="headerlink" href="#module-saltproc.materialflow" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.materialflow.</span></span><span class="sig-name descname"><span class="pre">Materialflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Material</span></code></p>
-<p>Class contains information about burnable material flow. Based on PyNE
-Material.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__add__">
-<span class="sig-name descname"><span class="pre">__add__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__add__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__add__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python adding operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>x</strong> (<em>obj</em>) – Materialflow object #1.</p></li>
-<li><p><strong>y</strong> (<em>obj</em>) – Materialflow object #2.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow which is a sum of isotope masses from <cite>x</cite> and <cite>y</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__deepcopy__">
-<span class="sig-name descname"><span class="pre">__deepcopy__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">memo</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__deepcopy__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__deepcopy__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Return a deep copy of compound object <cite>self</cite>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>self</strong> (<em>obj</em>) – Compound object.</p></li>
-<li><p><strong>memo</strong> (<em>dict</em><em>, </em><em>optional</em>) – Id-to-object correspondence to control for recursion.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>New compound object copied from <cite>self</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__eq__">
-<span class="sig-name descname"><span class="pre">__eq__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">other</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__eq__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__eq__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python <code class="docutils literal notranslate"><span class="pre">=</span></code> operation to compare two Materialflow
-objects. Compares objects total mass, density, atoms_per_molecule,
-temperature, mass flowrate, and masses of important isotopes:
-uranium-235 and uranium-238.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>other</strong> (<em>obj</em>) – Materialflow object to compare with.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Are the objects equal?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>PyNE.Material</strong> (<em>class</em>) – PyNE Material parent class containing nuclide vector, density,
-mass, atoms_per_molecule, metadata</p></li>
-<li><p><strong>temp</strong> (<em>float</em>) – temperature of the material flow (K)</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>void_frac</strong> (<em>float</em>) – void fraction in the material (%)</p></li>
-<li><p><strong>burnup</strong> (<em>float</em>) – material burnup at the end of depletion step [MWd/kgU]</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__rmul__">
-<span class="sig-name descname"><span class="pre">__rmul__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scaling_factor</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__rmul__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__rmul__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python multiplication operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>scaling_factor</strong> (<em>float</em><em> or </em><em>int</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow object which has mass of each isotope and
-mass_flowrate scaled by <cite>other</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.copy_pymat_attrs">
-<span class="sig-name descname"><span class="pre">copy_pymat_attrs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.copy_pymat_attrs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.copy_pymat_attrs" title="Permalink to this definition">¶</a></dt>
-<dd><p>Copies PyNE attributites from source object (<cite>src</cite>) to target
-object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>src</strong> (<em>obj</em>) – Materialflow object to copy attributes from.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.get_mass">
-<span class="sig-name descname"><span class="pre">get_mass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.get_mass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.get_mass" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns total mass of the material descibed in Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p>The mass of the object.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.print_attr">
-<span class="sig-name descname"><span class="pre">print_attr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.print_attr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.print_attr" title="Permalink to this definition">¶</a></dt>
-<dd><p>Prints various attributes of Materialflow object.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.scale_matflow">
-<span class="sig-name descname"><span class="pre">scale_matflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">f</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.scale_matflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.scale_matflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns nuclide vector dictionary, obtained from object attrs and
-then scaled by factor.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>f</strong> (<em>float</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>new_mat_comp</strong> – Materialflow nuclide component dictionary of relative mass.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The keys are preserved from PyNE Material (integers
-representing nuclides in id-form).</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Each nuclide’s mass fraction, multiplied by
-factor f.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of int to float</p>
-</dd>
-</dl>
-</dd></dl>
-
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-
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-             
-  <section id="module-saltproc.process">
-<span id="saltproc-process-module"></span><h1>saltproc.process module<a class="headerlink" href="#module-saltproc.process" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.process.Process">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.process.</span></span><span class="sig-name descname"><span class="pre">Process</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class describes process which must be applied to Materialflow to change
-burnable material composition.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Process object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>capacity</strong> (<em>float</em>) – maximum mass flow rate of the material flow which current process
-can handle (g/s)</p></li>
-<li><p><strong>volume</strong> (<em>float</em>) – total volume of the current facility (<span class="math notranslate nohighlight">\(cm^3\)</span>)</p></li>
-<li><p><strong>efficiency</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>element name for removal (not isotope)</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficency for the isotope (weight fraction)</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>optional_parameter</strong> (<em>float</em>) – user can define any castom parameter in the input file describing
-processes and use it in efficiency function</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Based on data from json file with Processes description calculate
-value (float) of the removal efficiency. If it was str describing
-efficiecny as a function (eps(x,m,t,P,L)) then calculating value. If it
-constant (float in processes.json) then just keep it as is.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.check_mass_conservation">
-<span class="sig-name descname"><span class="pre">check_mass_conservation</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.check_mass_conservation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.check_mass_conservation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Checking that Process.outflow + Process.waste_stream is equal
-Process.inflow and the total mass is being conserved. Returns <cite>True</cite> if
-the mass conserved or <cite>False</cite> if its mismatched.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.rem_elements">
-<span class="sig-name descname"><span class="pre">rem_elements</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">inflow</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.rem_elements"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.rem_elements" title="Permalink to this definition">¶</a></dt>
-<dd><p>Updates Materialflow object <cite>inflow</cite> after removal target isotopes
-with specific efficiency in single component of fuel reprocessing
-system and returns waste stream Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>inflow</strong> (<em>Materialflow obj</em>) – Target material stream to remove poisons from.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Waste stream from the reprocessing system component.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>Materialflow object</p>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
-
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-          </div>
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-             
-  <section id="module-saltproc.reactor">
-<span id="saltproc-reactor-module"></span><h1>saltproc.reactor module<a class="headerlink" href="#module-saltproc.reactor" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.reactor.</span></span><span class="sig-name descname"><span class="pre">Reactor</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depl_hist</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class contains information about current state of the reactor.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depl_hist</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the class.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>volume</strong> (<em>float</em>) – Total volume of the reactor core (<span class="math notranslate nohighlight">\(cm^3\)</span>).</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – Total mass flowrate through reactor (g/s).</p></li>
-<li><p><strong>power_levels</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Normalized power level for each depletion step (W).</p></li>
-<li><p><strong>depl_hist</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Cumulative depletion time (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
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-  <section id="module-saltproc.separator">
-<span id="saltproc-separator-module"></span><h1>saltproc.separator module<a class="headerlink" href="#module-saltproc.separator" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.separator.Separator">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.separator.</span></span><span class="sig-name descname"><span class="pre">Separator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Class evaluates gas removal efficiency in separator (bubble separator).</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.do">
-<span class="sig-name descname"><span class="pre">do</span></span><a class="headerlink" href="#saltproc.separator.Separator.do" title="Permalink to this definition">¶</a></dt>
-<dd><p>gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.separator.Separator.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.separator.Separator.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.deltap">
-<span class="sig-name descname"><span class="pre">deltap</span></span><a class="headerlink" href="#saltproc.separator.Separator.deltap" title="Permalink to this definition">¶</a></dt>
-<dd><p>Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.separator.Separator.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.k">
-<span class="sig-name descname"><span class="pre">k</span></span><a class="headerlink" href="#saltproc.separator.Separator.k" title="Permalink to this definition">¶</a></dt>
-<dd><p>Slope of the initial swirling (use 1 for this).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency from Jiaqi’s correlation. [1]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Separator object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>do</strong> (<em>float</em>) – gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>deltap</strong> (<em>float</em>) – Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p></li>
-<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>jl</strong> (<em>float</em>) – liquid superficial velocity (m/s)</p></li>
-<li><p><strong>alpha</strong> (<em>float</em>) – void fraction</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides the existing method in Process class to provide
-efficiency values of target isotopes calculated in eff() function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in
-sensitivity analysis</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>pltdict</strong> – contains instances’ information</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas/bubble separation efficiency from Jiaqi’s correlation</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary that contains removal efficiency of each target
-element.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id3">
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-  <section id="module-saltproc.simulation">
-<span id="saltproc-simulation-module"></span><h1>saltproc.simulation module<a class="headerlink" href="#module-saltproc.simulation" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.simulation.</span></span><span class="sig-name descname"><span class="pre">Simulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SERPENT'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">core_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">h5_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'./saltproc_mat'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class sets up parameters for simulation, runs Serpent, parses output,
-creates input.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'SERPENT'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">core_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">h5_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'./saltproc_mat'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Simulation object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>sim_name</strong> (<em>str</em>) – Name of simulation may contain number of reference case, paper name
-or other specific information to identify simulation.</p></li>
-<li><p><strong>sim_depcode</strong> (<em>obj</em>) – Depcode object initiated using Depcode class.</p></li>
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for Serpent run (<cite>-omp</cite> flag in Serpent).</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for Serpent run (<cite>-mpi</cite> flag in Serpent).</p></li>
-<li><p><strong>h5_file</strong> (<em>str</em>) – Name of HDF5 database.</p></li>
-<li><p><strong>compression</strong> (<em>Pytables filter object</em>) – HDF5 database compression parameters.</p></li>
-<li><p><strong>iter_matfile</strong> (<em>str</em>) – Name of file containing burnable materials composition used in
-Serpent runs and update after each depletion step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.check_switch_geo_trigger">
-<span class="sig-name descname"><span class="pre">check_switch_geo_trigger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_time</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">switch_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.check_switch_geo_trigger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.check_switch_geo_trigger" title="Permalink to this definition">¶</a></dt>
-<dd><p>Compares current timestep with user defined time to switch geometry.
-Returns <cite>True</cite> if its time.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>current_timestep</strong> (<em>int</em>) – Current time after depletion started.</p></li>
-<li><p><strong>switch_time</strong> (<em>list</em>) – List containing moments in time when geometry have to be switched.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>is the next geometry must be used at the next step?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.read_k_eds_delta">
-<span class="sig-name descname"><span class="pre">read_k_eds_delta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_timestep</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.read_k_eds_delta"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.read_k_eds_delta" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads from database delta between previous and current <cite>keff</cite> at the
-end of depletion step and returns <cite>True</cite> if predicted <cite>keff</cite> at the
-next depletion step drops below 1.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>current_timestep</strong> (<em>int</em>) – Number of current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Was this simulation restarted?</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Is the reactor will become subcritical at the next step?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.runsim_no_reproc">
-<span class="sig-name descname"><span class="pre">runsim_no_reproc</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nsteps</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.runsim_no_reproc"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.runsim_no_reproc" title="Permalink to this definition">¶</a></dt>
-<dd><p>Run simulation sequence for integral test. No reprocessing involved,
-just re-running Serpent for comparision with model output.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>nsteps</strong> (<em>int</em>) – Number of depletion time steps in integration test run.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_after_repr">
-<span class="sig-name descname"><span class="pre">store_after_repr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">after_mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">step</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_after_repr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_after_repr" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds to HDF5 database waste streams data for each process after
-reprocessing was performed (grams per depletion step).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>after_mats</strong> (<cite>Materialflow</cite>) – Burnable material stream object after performing reprocessing.</p></li>
-<li><p><strong>waste_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that maps <cite>Process</cite> objects to waste <cite>Materialflow</cite>
-objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p><cite>Process</cite> name (<cite>str</cite>)</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>step</strong> (<em>int</em>) – Current depletion step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_mat_data">
-<span class="sig-name descname"><span class="pre">store_mat_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">d_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">moment</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_mat_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_mat_data" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes HDF5/Pytables database (if not exist) or append burnable
-material composition, mass, density, volume, temperature, burnup,
-mass_flowrate, void_fraction, at the current depletion step to it.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>d_step</strong> (<em>int</em>) – Current depletion step.</p></li>
-<li><p><strong>moment</strong> (<em>int</em>) – Indicates at which moment in the depletion step store the data. <cite>0</cite>
-refers the beginning, <cite>1</cite> refers the end of depletion step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_init_info">
-<span class="sig-name descname"><span class="pre">store_run_init_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_init_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_init_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds to database Serpent and Saltproc simulation parameters before
-starting depletion sequence.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_step_info">
-<span class="sig-name descname"><span class="pre">store_run_step_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_step_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_step_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds to database Serpent and Saltproc simulation parameters
-(execution time, memory usage), multiplication factor, breeding ratio,
-delayed neutron precursor data, fission mass, cumulative depletion
-time, power level for the current time step.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.switch_to_next_geometry">
-<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts line with path to next Serpent geometry file at the
-beginning of the Serpent iteration input file.</p>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.sparger">
-<span id="saltproc-sparger-module"></span><h1>saltproc.sparger module<a class="headerlink" href="#module-saltproc.sparger" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.sparger.</span></span><span class="sig-name descname"><span class="pre">Sparger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Class evaluates gas removal efficiency in sparger (bubble generator).</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.h_const">
-<span class="sig-name descname"><span class="pre">h_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.h_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Henry’s law constant.</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.gas_const">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.gas_const" title="Permalink to this definition">¶</a></dt>
-<dd><p>universal gas constant (Pa.m^3/mol-K)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.diffusivity">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.diffusivity" title="Permalink to this definition">¶</a></dt>
-<dd><p>liquid phase diffusivity (cm^2/s)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.exp_const">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.exp_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>exponential constant from following reference</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.length">
-<span class="sig-name descname"><span class="pre">length</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.length" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor length (m)
-Default: 10</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_salt">
-<span class="sig-name descname"><span class="pre">temp_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>salt temperature (K)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.area">
-<span class="sig-name descname"><span class="pre">area</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.area" title="Permalink to this definition">¶</a></dt>
-<dd><p>contactor cross-section (m^2)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eps">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eps" title="Permalink to this definition">¶</a></dt>
-<dd><p>Defines gas removal efficiency for sparger (bubble generator)
-using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.sherwood">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.sherwood" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations from different sources.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Henry’s law constants (Pa.m3/mol) for Xe, Kr, H from
-Sander, R.: Compilation of Henry’s law constants (version 4.0)
-for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,
-<a class="reference external" href="https://doi.org/10.5194/acp-15-4399-2015">https://doi.org/10.5194/acp-15-4399-2015</a>, 2015.
-[2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating
-Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge
-National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.
-[3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Sparger object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>length</strong> (<em>float</em>) – sparger/contractor length (m)
-Default: 10</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>temp_salt</strong> (<em>float</em>) – salt temperature (K)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>corr</strong> (<em>string</em>) – Sherwood correlations: ORNL-TM-2245 or Jaiqi’s
-(1) milestone report from Jiaqi [3]
-(2) ORNL-TM-2245 Eq.36 [2]
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values comes from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides the existing method in Process class to provide
-efficiency values of target isotopes calculated in eff() function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in sensitivity
-analysis
-:returns: <strong>pltdict</strong> – contains instances’ information
-:rtype: dict of str to str</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">2.5e-09</span></em><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id3">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.
-In this function, vl, mu, rho, number_sh, number_sc, number_re and kl
-are average liquid velocity (m/s), kinematic viscosity (Pa.s),
-density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,
-schmidt number, reynold number and liquid phase mass transfer
-coefficient (m/s), respectively.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary containing removal efficiency of each target isotope.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id4">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id4" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency using Eq. 4
-from Peebles report (ORNL-TM-2245).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>efficiency</strong> – removal efficiency of a specific chemical element.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id5">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">0,</span> <span class="pre">'Kr':</span> <span class="pre">1900,</span> <span class="pre">'Xe':</span> <span class="pre">2300}</span></em><a class="headerlink" href="#id5" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id6">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">8.314</span></em><a class="headerlink" href="#id6" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id7">
-<span class="sig-name descname"><span class="pre">h_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">2.6e-06,</span> <span class="pre">'Kr':</span> <span class="pre">2.5e-05,</span> <span class="pre">'Xe':</span> <span class="pre">4.3e-05}</span></em><a class="headerlink" href="#id7" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id8">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id8" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations.
-Sherwood correlations: ORNL-TM-2245 or Jaiqi
-(1) Jaiqi Ph.D. dissertation
-(2) ORNL-TM-2245 Eq.36
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id9">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">298.15</span></em><a class="headerlink" href="#id9" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
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-
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-  <section id="saltproc-tests-package">
-<h1>saltproc.tests package<a class="headerlink" href="#saltproc-tests-package" title="Permalink to this heading">¶</a></h1>
-<section id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_app.html">saltproc.tests.test_app module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot"><code class="docutils literal notranslate"><span class="pre">test_read_dot()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input"><code class="docutils literal notranslate"><span class="pre">test_read_main_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_processes_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill"><code class="docutils literal notranslate"><span class="pre">test_refill()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing"><code class="docutils literal notranslate"><span class="pre">test_reprocessing()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_depcode.html">saltproc.tests.test_depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par"><code class="docutils literal notranslate"><span class="pre">test_change_sim_par()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">test_create_iter_matfile()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name"><code class="docutils literal notranslate"><span class="pre">test_get_nuc_name()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_tra_or_dec"><code class="docutils literal notranslate"><span class="pre">test_get_tra_or_dec()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">test_insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp"><code class="docutils literal notranslate"><span class="pre">test_read_dep_comp()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_info()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_template"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_template()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters"><code class="docutils literal notranslate"><span class="pre">test_replace_burnup_parameters()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_sss_meta_zzz"><code class="docutils literal notranslate"><span class="pre">test_sss_meta_zzz()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input"><code class="docutils literal notranslate"><span class="pre">test_write_depcode_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file"><code class="docutils literal notranslate"><span class="pre">test_write_mat_file()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_materialflow.html">saltproc.tests.test_materialflow module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">test_copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass"><code class="docutils literal notranslate"><span class="pre">test_get_mass()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow"><code class="docutils literal notranslate"><span class="pre">test_scale_matflow()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_process.html">saltproc.tests.test_process module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_separator.html">saltproc.tests.test_separator module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_simulation.html">saltproc.tests.test_simulation module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta"><code class="docutils literal notranslate"><span class="pre">test_read_k_eds_delta()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">test_switch_to_next_geometry()</span></code></a></li>
-</ul>
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-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_sparger.html">saltproc.tests.test_sparger module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</div>
-</section>
-<section id="module-saltproc.tests">
-<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-saltproc.tests" title="Permalink to this heading">¶</a></h2>
-<p>This subpackage contains the unit and integration tests for saltproc.</p>
-</section>
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-<span id="saltproc-tests-test-depcode-module"></span><h1>saltproc.tests.test_depcode module<a class="headerlink" href="#module-saltproc.tests.test_depcode" title="Permalink to this heading">¶</a></h1>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_change_sim_par</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_change_sim_par"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_change_sim_par" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_create_iter_matfile</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_create_iter_matfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_create_iter_matfile" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_get_nuc_name</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_get_nuc_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_get_nuc_name" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_get_tra_or_dec</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_get_tra_or_dec"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_get_tra_or_dec" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_read_dep_comp</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_read_dep_comp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_read_dep_comp" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_read_depcode_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_read_depcode_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_read_depcode_info" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_read_depcode_step_param</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_read_depcode_step_param"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_read_depcode_step_param" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_read_depcode_template</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_read_depcode_template"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_read_depcode_template" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_replace_burnup_parameters</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_replace_burnup_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_replace_burnup_parameters" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_sss_meta_zzz</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_sss_meta_zzz"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_sss_meta_zzz" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_write_depcode_input</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_write_depcode_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_write_depcode_input" title="Permalink to this definition">¶</a></dt>
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diff --git a/v0.3.0/src/saltproc.tests.test_materialflow.html b/v0.3.0/src/saltproc.tests.test_materialflow.html
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deleted file mode 100644
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-  <h1>Source code for saltproc.app</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Simulation</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Reactor</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Sparger</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Separator</span>
-<span class="c1"># from depcode import Depcode</span>
-<span class="c1"># from simulation import Simulation</span>
-<span class="c1"># from materialflow import Materialflow</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">copy</span>
-<span class="kn">import</span> <span class="nn">json</span>
-<span class="kn">import</span> <span class="nn">jsonschema</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
-<span class="kn">import</span> <span class="nn">gc</span>
-<span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
-<span class="kn">import</span> <span class="nn">pydotplus</span>
-<span class="kn">import</span> <span class="nn">argparse</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<div class="viewcode-block" id="parse_arguments"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.parse_arguments">[docs]</a><span class="k">def</span> <span class="nf">parse_arguments</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses arguments from command line.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    n: int</span>
-<span class="sd">        Number of nodes for use in depletion code simulation.</span>
-<span class="sd">    d: int</span>
-<span class="sd">        Number of cores for use in depletion code simulation.</span>
-<span class="sd">    i: str</span>
-<span class="sd">        Path and name of main SaltProc input file (json format).</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">parser</span> <span class="o">=</span> <span class="n">argparse</span><span class="o">.</span><span class="n">ArgumentParser</span><span class="p">()</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-n&#39;</span><span class="p">,</span>      <span class="c1"># Number of nodes to use</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;number of cluster nodes to use in </span><span class="se">\</span>
-<span class="s1">                        depletion code simulation&#39;</span><span class="p">)</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-d&#39;</span><span class="p">,</span>      <span class="c1"># Number of cores to use</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">int</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;number of threads to use in </span><span class="se">\</span>
-<span class="s1">                        depletion code simulation&#39;</span><span class="p">)</span>
-    <span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s1">&#39;-i&#39;</span><span class="p">,</span>      <span class="c1"># main input file</span>
-                        <span class="nb">type</span><span class="o">=</span><span class="nb">str</span><span class="p">,</span>
-                        <span class="n">default</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                        <span class="n">help</span><span class="o">=</span><span class="s1">&#39;path and name of SaltProc main input file&#39;</span><span class="p">)</span>
-    <span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span>
-    <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">n</span><span class="p">),</span> <span class="nb">int</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">d</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">i</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="read_main_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_main_input">[docs]</a><span class="k">def</span> <span class="nf">read_main_input</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reads main SaltProc input file (json format).</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    main_inp_file : str</span>
-<span class="sd">        Path to SaltProc main input file and name of this file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">input_schema</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)),</span>
-                                <span class="s1">&#39;./input_schema.json&#39;</span><span class="p">)</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">main_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">input_schema</span><span class="p">)</span> <span class="k">as</span> <span class="n">s</span><span class="p">:</span>
-            <span class="n">v</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">jsonschema</span><span class="o">.</span><span class="n">validate</span><span class="p">(</span><span class="n">instance</span><span class="o">=</span><span class="n">j</span><span class="p">,</span> <span class="n">schema</span><span class="o">=</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">except</span> <span class="n">jsonschema</span><span class="o">.</span><span class="n">exceptions</span><span class="o">.</span><span class="n">ValidationError</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Your input file improperly structured.</span><span class="se">\</span>
-<span class="s2">                      Please see saltproc/tests/test.json for an example.&quot;</span><span class="p">)</span>
-
-        <span class="c1"># Global input path</span>
-        <span class="n">path_prefix</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">()</span>
-        <span class="n">input_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">path_prefix</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">))</span>
-
-        <span class="c1"># Saltproc settings</span>
-        <span class="k">global</span> <span class="n">spc_inp_file</span><span class="p">,</span> <span class="n">dot_inp_file</span><span class="p">,</span> <span class="n">output_path</span><span class="p">,</span> <span class="n">num_depsteps</span>
-        <span class="n">spc_inp_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">j</span><span class="p">[</span><span class="s1">&#39;proc_input_file&#39;</span><span class="p">])</span>
-        <span class="n">dot_inp_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">name</span><span class="p">),</span>
-            <span class="n">j</span><span class="p">[</span><span class="s1">&#39;dot_input_file&#39;</span><span class="p">])</span>
-        <span class="n">output_path</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s1">&#39;output_path&#39;</span><span class="p">]</span>
-        <span class="n">num_depsteps</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s1">&#39;num_depsteps&#39;</span><span class="p">]</span>
-
-        <span class="c1"># Global output path</span>
-        <span class="n">output_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">input_path</span><span class="p">,</span> <span class="n">output_path</span><span class="p">)</span>
-        <span class="n">j</span><span class="p">[</span><span class="s1">&#39;output_path&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">output_path</span>
-
-        <span class="c1"># Class settings</span>
-        <span class="k">global</span> <span class="n">depcode_inp</span><span class="p">,</span> <span class="n">simulation_inp</span><span class="p">,</span> <span class="n">reactor_inp</span>
-        <span class="n">depcode_inp</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s1">&#39;depcode&#39;</span><span class="p">]</span>
-        <span class="n">simulation_inp</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s1">&#39;simulation&#39;</span><span class="p">]</span>
-        <span class="n">reactor_inp</span> <span class="o">=</span> <span class="n">j</span><span class="p">[</span><span class="s1">&#39;reactor&#39;</span><span class="p">]</span>
-
-        <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;template_inputfile_path&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">input_path</span><span class="p">,</span> <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;template_inputfile_path&#39;</span><span class="p">])</span>
-        <span class="n">geo_list</span> <span class="o">=</span> <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;geo_file_paths&#39;</span><span class="p">]</span>
-
-        <span class="c1"># Global geometry file paths</span>
-        <span class="n">geo_file_paths</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">g</span> <span class="ow">in</span> <span class="n">geo_list</span><span class="p">:</span>
-            <span class="n">geo_file_paths</span> <span class="o">+=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">input_path</span><span class="p">,</span> <span class="n">g</span><span class="p">)]</span>
-        <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;geo_file_paths&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">geo_file_paths</span>
-
-        <span class="c1"># Global output file paths</span>
-        <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_inputfile&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">output_path</span><span class="p">,</span> <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_inputfile&#39;</span><span class="p">])</span>
-        <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_matfile&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">output_path</span><span class="p">,</span> <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_matfile&#39;</span><span class="p">])</span>
-        <span class="n">db_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">output_path</span><span class="p">,</span> <span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">])</span>
-        <span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">db_name</span>
-
-        <span class="n">dep_step_length_cumulative</span> <span class="o">=</span> <span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;dep_step_length_cumulative&#39;</span><span class="p">]</span>
-        <span class="n">power_levels</span> <span class="o">=</span> <span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">num_depsteps</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">num_depsteps</span> <span class="o">&lt;</span> <span class="mf">0.0</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">int</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Depletion step interval cannot be negative&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">step</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">num_depsteps</span><span class="p">)</span>
-                <span class="n">deptot</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">*</span> <span class="n">step</span>
-                <span class="n">dep_step_length_cumulative</span> <span class="o">=</span> \
-                    <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
-                                <span class="n">deptot</span><span class="p">,</span>
-                                <span class="n">num</span><span class="o">=</span><span class="n">step</span><span class="p">)</span>
-                <span class="n">power_levels</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">power_levels</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">*</span> \
-                    <span class="n">np</span><span class="o">.</span><span class="n">ones_like</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">)</span>
-                <span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;dep_step_length_cumulative&#39;</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="n">dep_step_length_cumulative</span>
-                <span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">power_levels</span>
-        <span class="k">elif</span> <span class="n">num_depsteps</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">,</span>
-                                                 <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dep_step_length_cumulative</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">power_levels</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
-                    <span class="s1">&#39;Depletion step list and power list shape mismatch&#39;</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="read_processes_from_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_processes_from_input">[docs]</a><span class="k">def</span> <span class="nf">read_processes_from_input</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses ``removal`` data from `.json` file with `Process` objects</span>
-<span class="sd">    description. Then returns dictionary of `Process` objects describing</span>
-<span class="sd">    extraction process efficiency for each target chemical element.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    mats : dict of str to Process</span>
-<span class="sd">        Dictionary that contains `Process` objects.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Process` object holding extraction process parameters.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">processes</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">spc_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">mat</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">j</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">obj_name</span><span class="p">,</span> <span class="n">obj_data</span> <span class="ow">in</span> <span class="n">j</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="s1">&#39;extraction_processes&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Processs object data: &quot;</span><span class="p">,</span> <span class="n">obj_data</span><span class="p">)</span>
-                <span class="n">st</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;efficiency&#39;</span><span class="p">]</span>
-                <span class="k">if</span> <span class="n">obj_name</span> <span class="o">==</span> <span class="s1">&#39;sparger&#39;</span> <span class="ow">and</span> <span class="n">st</span> <span class="o">==</span> <span class="s2">&quot;self&quot;</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Sparger</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-                <span class="k">elif</span> <span class="n">obj_name</span> <span class="o">==</span> <span class="s1">&#39;entrainment_separator&#39;</span> <span class="ow">and</span> <span class="n">st</span> <span class="o">==</span> <span class="s2">&quot;self&quot;</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Separator</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">processes</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Process</span><span class="p">(</span><span class="o">**</span><span class="n">obj_data</span><span class="p">)</span>
-
-        <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">processes</span></div>
-
-
-<div class="viewcode-block" id="read_feeds_from_input"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_feeds_from_input">[docs]</a><span class="k">def</span> <span class="nf">read_feeds_from_input</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Parses ``feed`` data from `.json` file with `Materialflow` objects</span>
-<span class="sd">    description. Then returns dictionary of `Materialflow` objects describing</span>
-<span class="sd">    fresh fuel feeds.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    mats : dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects with feeds.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object holding composition and properties of feed.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">spc_inp_file</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
-        <span class="n">j</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-        <span class="c1"># print(j[&#39;feeds&#39;])</span>
-        <span class="k">for</span> <span class="n">mat</span><span class="p">,</span> <span class="n">val</span> <span class="ow">in</span> <span class="n">j</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">obj_name</span><span class="p">,</span> <span class="n">obj_data</span> <span class="ow">in</span> <span class="n">j</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="s1">&#39;feeds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># print(obj_data)</span>
-                <span class="n">nucvec</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;comp&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;mass&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;density&#39;</span><span class="p">]</span>
-                <span class="n">feeds</span><span class="p">[</span><span class="n">mat</span><span class="p">][</span><span class="n">obj_name</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">obj_data</span><span class="p">[</span><span class="s1">&#39;volume&#39;</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">feeds</span></div>
-
-
-<div class="viewcode-block" id="read_dot"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.read_dot">[docs]</a><span class="k">def</span> <span class="nf">read_dot</span><span class="p">(</span><span class="n">dot_file</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reads directed graph that describes fuel reprocessing system structure</span>
-<span class="sd">    from `*.dot` file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    dot_file : str</span>
-<span class="sd">        Path to `.dot` file with reprocessing system structure.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    mat_name : str</span>
-<span class="sd">        Name of burnable material which reprocessing scheme described in `.dot`</span>
-<span class="sd">        file.</span>
-<span class="sd">    paths_list : list</span>
-<span class="sd">        List of lists containing all possible paths between `core_outlet` and</span>
-<span class="sd">        `core_inlet`.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">graph_pydot</span> <span class="o">=</span> <span class="n">pydotplus</span><span class="o">.</span><span class="n">graph_from_dot_file</span><span class="p">(</span><span class="n">dot_file</span><span class="p">)</span>
-    <span class="n">digraph</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">drawing</span><span class="o">.</span><span class="n">nx_pydot</span><span class="o">.</span><span class="n">from_pydot</span><span class="p">(</span><span class="n">graph_pydot</span><span class="p">)</span>
-    <span class="n">mat_name</span> <span class="o">=</span> <span class="n">digraph</span><span class="o">.</span><span class="n">name</span>
-    <span class="c1"># iterate over all possible paths between &#39;core_outlet&#39; and &#39;core_inlet&#39;</span>
-    <span class="n">paths_list</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">all_simple_paths</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">all_simple_paths</span><span class="p">(</span><span class="n">digraph</span><span class="p">,</span>
-                                           <span class="n">source</span><span class="o">=</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">,</span>
-                                           <span class="n">target</span><span class="o">=</span><span class="s1">&#39;core_inlet&#39;</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">all_simple_paths</span><span class="p">:</span>
-        <span class="n">paths_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">mat_name</span><span class="p">,</span> <span class="n">paths_list</span></div>
-
-
-<div class="viewcode-block" id="reprocessing"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.reprocessing">[docs]</a><span class="k">def</span> <span class="nf">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Applies reprocessing scheme to burnable materials.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    mats : dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects with burnable material</span>
-<span class="sd">        data right after irradiation in the core.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    waste : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Process name.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object containing waste streams data.</span>
-<span class="sd">    extracted_mass: dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Mass removed as waste in reprocessing function for each material</span>
-<span class="sd">            (g).</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">inmass</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">extracted_mass</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="n">forked_mats</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="n">prcs</span> <span class="o">=</span> <span class="n">read_processes_from_input</span><span class="p">()</span>
-    <span class="n">mats_name_dot</span><span class="p">,</span> <span class="n">paths</span> <span class="o">=</span> <span class="n">read_dot</span><span class="p">(</span><span class="n">dot_inp_file</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">mname</span> <span class="ow">in</span> <span class="n">prcs</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-        <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Material mass before reprocessing </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">])</span>
-        <span class="k">if</span> <span class="n">mname</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span> <span class="ow">and</span> <span class="n">mats_name_dot</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span><span class="p">:</span>
-            <span class="n">w</span> <span class="o">=</span> <span class="s1">&#39;waste_&#39;</span>
-            <span class="n">ctr</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">path</span> <span class="ow">in</span> <span class="n">paths</span><span class="p">:</span>
-                <span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]))</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Material mass </span><span class="si">%f</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">path</span><span class="p">:</span>
-                    <span class="c1"># Calculate fraction of the flow going to the process p</span>
-                    <span class="n">divisor</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">p</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">/</span>
-                                    <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;core_outlet&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Process </span><span class="si">%s</span><span class="s1">, divisor=</span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">divisor</span><span class="p">))</span>
-                    <span class="c1"># Update materialflow byt multiplying it by flow fraction</span>
-                    <span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">]</span> <span class="o">=</span> \
-                        <span class="n">divisor</span> <span class="o">*</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">])</span>
-                    <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">w</span> <span class="o">+</span> <span class="n">p</span><span class="p">]</span> <span class="o">=</span> \
-                        <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">p</span><span class="p">]</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">ctr</span><span class="p">])</span>
-                <span class="n">ctr</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="c1"># Sum all forked material objects together</span>
-            <span class="c1"># initilize correct obj instance</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">])):</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">+=</span> <span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="n">idx</span><span class="p">]</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;1 Forked material mass </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;2 Forked material mass </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">forked_mats</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Mass balance </span><span class="si">%f</span><span class="s1"> g = </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1"> + </span><span class="si">%f</span><span class="s1">&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">],</span>
-                   <span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_bypass&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                   <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-        <span class="c1"># Bootstrap for many materials</span>
-        <span class="k">if</span> <span class="n">mname</span> <span class="o">==</span> <span class="s1">&#39;ctrlPois&#39;</span><span class="p">:</span>
-            <span class="n">waste</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span> <span class="o">=</span> \
-                <span class="n">prcs</span><span class="p">[</span><span class="n">mname</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">])</span>
-        <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">=</span> <span class="n">inmass</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span> <span class="o">-</span> <span class="nb">float</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="n">mname</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-    <span class="k">del</span> <span class="n">prcs</span><span class="p">,</span> <span class="n">inmass</span><span class="p">,</span> <span class="n">mname</span><span class="p">,</span> <span class="n">forked_mats</span><span class="p">,</span> <span class="n">mats_name_dot</span><span class="p">,</span> <span class="n">paths</span><span class="p">,</span> <span class="n">divisor</span>
-    <span class="k">return</span> <span class="n">waste</span><span class="p">,</span> <span class="n">extracted_mass</span></div>
-
-
-<div class="viewcode-block" id="refill"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.refill">[docs]</a><span class="k">def</span> <span class="nf">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">extracted_mass</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Makes up material loss in removal processes by adding fresh fuel.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    mats : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object after performing all removals.</span>
-<span class="sd">    extracted_mass : dict of str to float</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Mass removed as waste in reprocessing function for each material.</span>
-<span class="sd">    waste_dict : dict of str to Materialflow</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Process name.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object containing waste streams data.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    refilled_mats: dict of str to Materialflow</span>
-<span class="sd">        Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of burnable material.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            `Materialflow` object after adding fresh fuel.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel before refill ^^^&#39;</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">read_feeds_from_input</span><span class="p">()</span>
-    <span class="n">refill_mats</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-    <span class="k">for</span> <span class="n">mn</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">feeds</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-        <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">feed_n</span><span class="p">,</span> <span class="n">fval</span> <span class="ow">in</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>  <span class="c1"># works with one feed only</span>
-            <span class="n">scale</span> <span class="o">=</span> <span class="n">extracted_mass</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">/</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">feed_n</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span>
-            <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">=</span> <span class="n">scale</span> <span class="o">*</span> <span class="n">feeds</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">feed_n</span><span class="p">]</span>
-            <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="s1">&#39;feed_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">feed_n</span><span class="p">)]</span> <span class="o">=</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span>
-        <span class="n">mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span> <span class="o">+=</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refilled fresh material </span><span class="si">%s</span><span class="s1"> </span><span class="si">%f</span><span class="s1"> g&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">mn</span><span class="p">,</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Refill Material ^^^&#39;</span><span class="p">,</span> <span class="n">refill_mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fuel after refill ^^^&#39;</span><span class="p">,</span> <span class="n">mats</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">print_attr</span><span class="p">())</span>
-    <span class="k">return</span> <span class="n">waste_dict</span></div>
-
-
-<div class="viewcode-block" id="run"><a class="viewcode-back" href="../../src/saltproc.app.html#saltproc.app.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot; Inititializes main run.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="c1"># Parse arguments from command-lines</span>
-    <span class="n">nodes</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">sp_input</span> <span class="o">=</span> <span class="n">parse_arguments</span><span class="p">()</span>
-    <span class="c1"># Read main input file</span>
-    <span class="n">read_main_input</span><span class="p">(</span><span class="n">sp_input</span><span class="p">)</span>
-    <span class="c1"># Print out input information</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Initiating Saltproc:</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Restart = &#39;</span> <span class="o">+</span>
-          <span class="nb">str</span><span class="p">(</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;restart_flag&#39;</span><span class="p">])</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Template File Path  = &#39;</span> <span class="o">+</span>
-          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;template_inputfile_path&#39;</span><span class="p">])</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Input File Path     = &#39;</span> <span class="o">+</span>
-          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_inputfile&#39;</span><span class="p">])</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Material File Path  = &#39;</span> <span class="o">+</span>
-          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_matfile&#39;</span><span class="p">])</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-          <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">Output HDF5 database Path = &#39;</span> <span class="o">+</span>
-          <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">])</span> <span class="o">+</span>
-          <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
-    <span class="c1"># Intializing objects</span>
-    <span class="k">if</span> <span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;codename&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;serpent&#39;</span><span class="p">:</span>
-        <span class="n">depcode</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-            <span class="n">exec_path</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;exec_path&#39;</span><span class="p">],</span>
-            <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;template_inputfile_path&#39;</span><span class="p">],</span>
-            <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_inputfile&#39;</span><span class="p">],</span>
-            <span class="n">iter_matfile</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;iter_matfile&#39;</span><span class="p">],</span>
-            <span class="n">geo_files</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;geo_file_paths&#39;</span><span class="p">],</span>
-            <span class="n">npop</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;npop&#39;</span><span class="p">],</span>
-            <span class="n">active_cycles</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">],</span>
-            <span class="n">inactive_cycles</span><span class="o">=</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
-            <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s2">&quot;codename&quot;</span><span class="p">]</span><span class="si">}</span><span class="s1"> is not a supported depletion code&#39;</span><span class="p">)</span>
-
-    <span class="n">simulation</span> <span class="o">=</span> <span class="n">Simulation</span><span class="p">(</span>
-        <span class="n">sim_name</span><span class="o">=</span><span class="s1">&#39;Super test&#39;</span><span class="p">,</span>
-        <span class="n">sim_depcode</span><span class="o">=</span><span class="n">depcode</span><span class="p">,</span>
-        <span class="n">core_number</span><span class="o">=</span><span class="n">cores</span><span class="p">,</span>
-        <span class="n">node_number</span><span class="o">=</span><span class="n">nodes</span><span class="p">,</span>
-        <span class="n">restart_flag</span><span class="o">=</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;restart_flag&#39;</span><span class="p">],</span>
-        <span class="n">adjust_geo</span><span class="o">=</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;adjust_geo&#39;</span><span class="p">],</span>
-        <span class="n">db_path</span><span class="o">=</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">])</span>
-
-    <span class="n">msr</span> <span class="o">=</span> <span class="n">Reactor</span><span class="p">(</span>
-        <span class="n">volume</span><span class="o">=</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;volume&#39;</span><span class="p">],</span>
-        <span class="n">mass_flowrate</span><span class="o">=</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;mass_flowrate&#39;</span><span class="p">],</span>
-        <span class="n">power_levels</span><span class="o">=</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">],</span>
-        <span class="n">dep_step_length_cumulative</span><span class="o">=</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;dep_step_length_cumulative&#39;</span><span class="p">])</span>
-    <span class="c1"># Check: Restarting previous simulation or starting new?</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">check_restart</span><span class="p">()</span>
-    <span class="c1"># Run sequence</span>
-    <span class="c1"># Start sequence</span>
-    <span class="k">for</span> <span class="n">dep_step</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">msr</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span><span class="p">)):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n\n\n</span><span class="s2">Step #</span><span class="si">%i</span><span class="s2"> has been started&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">dep_step</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">write_depcode_input</span><span class="p">(</span><span class="n">msr</span><span class="p">,</span>
-                                                   <span class="n">dep_step</span><span class="p">,</span>
-                                                   <span class="n">simulation</span><span class="o">.</span><span class="n">restart_flag</span><span class="p">)</span>
-        <span class="n">depcode</span><span class="o">.</span><span class="n">run_depcode</span><span class="p">(</span><span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">dep_step</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="n">simulation</span><span class="o">.</span><span class="n">restart_flag</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>  <span class="c1"># First step</span>
-            <span class="c1"># Read general simulation data which never changes</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_init_info</span><span class="p">()</span>
-            <span class="c1"># Parse and store data for initial state (beginning of dep_step)</span>
-            <span class="n">mats</span> <span class="o">=</span> <span class="n">depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">False</span><span class="p">)</span>
-            <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dep_step</span> <span class="o">-</span> <span class="mi">1</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-        <span class="c1"># Finish of First step</span>
-        <span class="c1"># Main sequence</span>
-        <span class="n">mats</span> <span class="o">=</span> <span class="n">depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_step_info</span><span class="p">()</span>
-        <span class="c1"># Reprocessing here</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel before reproc </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois before reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after reproc </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after reproc %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="n">waste_feed_st</span> <span class="o">=</span> <span class="n">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Mass and volume of fuel after REFILL </span><span class="si">%f</span><span class="s2"> g; </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span>
-              <span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-               <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-        <span class="c1"># print(&quot;Mass and volume of ctrlPois after REFILL %f g; %f cm3&quot; %</span>
-        <span class="c1">#       (mats[&#39;ctrlPois&#39;].mass,</span>
-        <span class="c1">#        mats[&#39;ctrlPois&#39;].vol))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Removed mass [g]:&quot;</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">)</span>
-        <span class="c1"># Store in DB after reprocessing and refill (right before next depl)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">store_after_repr</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">waste_feed_st</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">)</span>
-        <span class="n">depcode</span><span class="o">.</span><span class="n">write_mat_file</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
-        <span class="k">del</span> <span class="n">mats</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">,</span> <span class="n">waste_feed_st</span><span class="p">,</span> <span class="n">rem_mass</span>
-        <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-        <span class="c1"># Switch to another geometry?</span>
-        <span class="k">if</span> <span class="n">simulation</span><span class="o">.</span><span class="n">adjust_geo</span> <span class="ow">and</span> <span class="n">simulation</span><span class="o">.</span><span class="n">read_k_eds_delta</span><span class="p">(</span><span class="n">dep_step</span><span class="p">):</span>
-            <span class="n">depcode</span><span class="o">.</span><span class="n">switch_to_next_geometry</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">Time at the end of current depletion step </span><span class="si">%f</span><span class="s2">d&quot;</span> <span class="o">%</span>
-              <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Simulation succeeded.</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
-        <span class="sd">&#39;&#39;&#39;print(&quot;Reactor object data.\n&quot;,</span>
-<span class="sd">              msr.mass_flowrate,</span>
-<span class="sd">              msr.power_levels,</span>
-<span class="sd">              msr.dep_step_length_cumulative)&#39;&#39;&#39;</span></div>
-</pre></div>
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diff --git a/v0.4.0/_modules/saltproc/depcode.html b/v0.4.0/_modules/saltproc/depcode.html
deleted file mode 100644
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-  <h1>Source code for saltproc.depcode</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">tables</span> <span class="k">as</span> <span class="nn">tb</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">serpent</span>
-<span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span>
-
-
-<div class="viewcode-block" id="Depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode">[docs]</a><span class="k">class</span> <span class="nc">Depcode</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&quot;&quot;&quot;Abstract class for interfacing with monte-carlo particle transport</span>
-<span class="sd">    codes. Contains information about input, output, geometry, and template</span>
-<span class="sd">    files for running depletion simulations. Also contains neutron</span>
-<span class="sd">    population, active, and inactive cycles. Contains methods to read template</span>
-<span class="sd">    and output files, and write new input files for the depletion code.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Depcode.__init__"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">codename</span><span class="p">,</span>
-                 <span class="n">exec_path</span><span class="p">,</span>
-                 <span class="n">template_inputfile_path</span><span class="p">,</span>
-                 <span class="n">iter_inputfile</span><span class="p">,</span>
-                 <span class="n">iter_matfile</span><span class="p">,</span>
-                 <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                 <span class="n">npop</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
-                 <span class="n">active_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">,</span>
-                 <span class="n">inactive_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the Depcode object.</span>
-
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           codename : str</span>
-<span class="sd">               Name of depletion code.</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to depletion code executable.</span>
-<span class="sd">           template_inputfile_path : str</span>
-<span class="sd">               Path to depletion code input file template.</span>
-<span class="sd">           iter_inputfile : str</span>
-<span class="sd">               Name of depletion code input file for depletion code rerunning.</span>
-<span class="sd">           iter_matfile : str</span>
-<span class="sd">               Name of iterative, rewritable material file for depletion code</span>
-<span class="sd">               rerunning. This file is modified during  the simulation.</span>
-<span class="sd">           geo_files : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">           npop : int, optional</span>
-<span class="sd">               Size of neutron population per cycle for Monte Carlo.</span>
-<span class="sd">           active_cycles : int, optional</span>
-<span class="sd">               Number of active cycles.</span>
-<span class="sd">           inactive_cycles : int, optional</span>
-<span class="sd">               Number of inactive cycles.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">codename</span> <span class="o">=</span> <span class="n">codename</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span> <span class="o">=</span> <span class="n">exec_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span> <span class="o">=</span> <span class="n">template_inputfile_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">iter_inputfile</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">=</span> <span class="n">iter_matfile</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">geo_files</span> <span class="o">=</span> <span class="n">geo_files</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="n">npop</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="n">active_cycles</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="n">inactive_cycles</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span> <span class="o">=</span> <span class="p">{}</span></div>
-
-<div class="viewcode-block" id="Depcode.read_depcode_info"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_info">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_depcode_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses initial depletion code info data from depletion code</span>
-<span class="sd">        output and stores it in the `Depcode` object&#39;s ``sim_info`` attribute.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.read_depcode_step_param"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_step_param">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_depcode_step_param</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses data from depletion code output for each step and stores</span>
-<span class="sd">        it in `Depcode` object&#39;s ``param`` attributes.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.read_dep_comp"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">read_dep_comp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the depleted material data from the depcode simulation</span>
-<span class="sd">        and returns a dictionary with a `Materialflow` object for each</span>
-<span class="sd">        burnable material.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        read_at_end : bool, optional</span>
-<span class="sd">            Controls at which moment in the depletion step to read the data.</span>
-<span class="sd">            If `True`, the function reads data at the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.run_depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">run_depcode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Runs depletion code as a subprocess with the given parameters.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cores : int</span>
-<span class="sd">            Number of cores to use for depletion code run.</span>
-<span class="sd">        nodes : int</span>
-<span class="sd">            Number of nodes to use for depletion code run.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.switch_to_next_geometry">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Inserts line with path to next depletion code geometry file at the</span>
-<span class="sd">        beginning of the depletion code iteration input file.</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.write_depcode_input"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.write_depcode_input">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">write_depcode_input</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Writes prepared data into depletion code input file(s).</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-<span class="sd">        &quot;&quot;&quot;</span></div>
-
-<div class="viewcode-block" id="Depcode.write_mat_file"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file">[docs]</a>    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">write_mat_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dep_dict</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes the iteration input file containing the burnable materials</span>
-<span class="sd">        composition used in depletion runs and updated after each depletion</span>
-<span class="sd">        step.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dep_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        dep_end_time : float</span>
-<span class="sd">            Current time at the end of the depletion step (d).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span></div></div>
-
-
-<div class="viewcode-block" id="DepcodeSerpent"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent">[docs]</a><span class="k">class</span> <span class="nc">DepcodeSerpent</span><span class="p">(</span><span class="n">Depcode</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&quot;&quot;&quot;Class contains information about input, output, geometry, and</span>
-<span class="sd">    template files for running Serpent2 depletion simulations.</span>
-<span class="sd">    Also contains neutrons population, active, and inactive cycles.</span>
-<span class="sd">    Contains methods to read template and output files,</span>
-<span class="sd">    write new input files for Serpent2.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="DepcodeSerpent.__init__"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                 <span class="n">exec_path</span><span class="o">=</span><span class="s2">&quot;sss2&quot;</span><span class="p">,</span>
-                 <span class="n">template_inputfile_path</span><span class="o">=</span><span class="s2">&quot;reactor.serpent&quot;</span><span class="p">,</span>
-                 <span class="n">iter_inputfile</span><span class="o">=</span><span class="s2">&quot;data/saltproc_reactor&quot;</span><span class="p">,</span>
-                 <span class="n">iter_matfile</span><span class="o">=</span><span class="s2">&quot;data/saltproc_mat&quot;</span><span class="p">,</span>
-                 <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-                 <span class="n">npop</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span>
-                 <span class="n">active_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">,</span>
-                 <span class="n">inactive_cycles</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the DepcodeSerpent object.</span>
-
-<span class="sd">           Parameters</span>
-<span class="sd">           ----------</span>
-<span class="sd">           exec_path : str</span>
-<span class="sd">               Path to Serpent2 executable.</span>
-<span class="sd">           template_inputfile_path : str</span>
-<span class="sd">               Path to user input file for Serpent2.</span>
-<span class="sd">           iter_inputfile : str</span>
-<span class="sd">                Name of Serpent2 input file for Serpent2 rerunning.</span>
-<span class="sd">           iter_matfile : str</span>
-<span class="sd">               Name of iterative, rewritable material file for Serpent2</span>
-<span class="sd">               rerunning. This file is modified during  the simulation.</span>
-<span class="sd">           geo_files : str or list, optional</span>
-<span class="sd">               Path to file that contains the reactor geometry.</span>
-<span class="sd">               List of `str` if reactivity control by</span>
-<span class="sd">               switching geometry is `On` or just `str` otherwise.</span>
-<span class="sd">           npop : int, optional</span>
-<span class="sd">               Size of neutron population per cycle for Monte Carlo.</span>
-<span class="sd">           active_cycles : int, optional</span>
-<span class="sd">               Number of active cycles.</span>
-<span class="sd">           inactive_cycles : int, optional</span>
-<span class="sd">               Number of inactive cycles.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="s2">&quot;serpent&quot;</span><span class="p">,</span>
-                         <span class="n">exec_path</span><span class="p">,</span>
-                         <span class="n">template_inputfile_path</span><span class="p">,</span>
-                         <span class="n">iter_inputfile</span><span class="p">,</span>
-                         <span class="n">iter_matfile</span><span class="p">,</span>
-                         <span class="n">geo_files</span><span class="p">,</span>
-                         <span class="n">npop</span><span class="p">,</span>
-                         <span class="n">active_cycles</span><span class="p">,</span>
-                         <span class="n">inactive_cycles</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.change_sim_par"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par">[docs]</a>    <span class="k">def</span> <span class="nf">change_sim_par</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Finds simulation parameters (neutron population, cycles) in the</span>
-<span class="sd">        Serpent2 template file and change them to the parameters from the</span>
-<span class="sd">        SaltProc input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s Serpent2 template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        input_data : list</span>
-<span class="sd">            List of strings containing Serpent2 input file with new</span>
-<span class="sd">            simulation parameters.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">npop</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">:</span>
-            <span class="n">sim_param</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span> <span class="k">if</span> <span class="n">s</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;set pop&quot;</span><span class="p">)]</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sim_param</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> contains multiple lines with &#39;</span>
-                      <span class="s1">&#39;simulation parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
-                      <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">),</span> <span class="n">sim_param</span><span class="p">)</span>
-                <span class="k">return</span>
-            <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">sim_param</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span>
-                    <span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> does not contain line with &#39;</span>
-                    <span class="s1">&#39;simulation parameters.&#39;</span> <span class="o">%</span>
-                    <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">))</span>
-                <span class="k">return</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="s1">&#39;set pop </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-                                           <span class="bp">self</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">)</span>
-        <span class="k">return</span> <span class="p">[</span><span class="n">s</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">sim_param</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">args</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.create_iter_matfile"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile">[docs]</a>    <span class="k">def</span> <span class="nf">create_iter_matfile</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Finds ``include`` line with path to material file, copies content of</span>
-<span class="sd">        this file to iteration material file, changes path in ``include`` line</span>
-<span class="sd">        to newly created iteration material file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        input_data : list</span>
-<span class="sd">            List of strings containing modified user template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">data_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-        <span class="n">include_str</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span> <span class="k">if</span> <span class="n">s</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;include &quot;</span><span class="p">)]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">include_str</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> has no &lt;include &quot;material_file&quot;&gt;&#39;</span>
-                  <span class="s1">&#39; statements &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">))</span>
-            <span class="k">return</span>
-        <span class="n">src_file</span> <span class="o">=</span> <span class="n">include_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isabs</span><span class="p">(</span><span class="n">src_file</span><span class="p">):</span>
-            <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">normpath</span><span class="p">(</span><span class="n">data_dir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">src_file</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">abs_src_matfile</span> <span class="o">=</span> <span class="n">src_file</span>
-            <span class="k">if</span> <span class="s1">&#39;mat &#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="nb">open</span><span class="p">(</span><span class="n">abs_src_matfile</span><span class="p">)</span><span class="o">.</span><span class="n">read</span><span class="p">():</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ERROR: Template file </span><span class="si">%s</span><span class="s1"> has not include file with&#39;</span>
-                      <span class="s1">&#39; materials description or &lt;include &quot;material_file&quot;&gt;&#39;</span>
-                      <span class="s1">&#39; statement is not appears&#39;</span>
-                      <span class="s1">&#39; as first &lt;include&gt; statement</span><span class="se">\n</span><span class="s1">&#39;</span>
-                      <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">))</span>
-                <span class="k">return</span>
-        <span class="c1"># Create data directory</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">os</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">))</span>
-        <span class="k">except</span> <span class="ne">FileExistsError</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="c1"># Create file with path for SaltProc rewritable iterative material file</span>
-        <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">abs_src_matfile</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-        <span class="k">return</span> <span class="p">[</span><span class="n">s</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">src_file</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.get_nuc_name"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name">[docs]</a>    <span class="k">def</span> <span class="nf">get_nuc_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns nuclide name in human-readable notation: chemical symbol</span>
-<span class="sd">        (one or two characters), dash, and the atomic weight. Lastly, if the</span>
-<span class="sd">        nuclide is in metastable state, the letter `m` is concatenated with</span>
-<span class="sd">        number of excited state. For example, `Am-242m1`.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        nuc_code : str</span>
-<span class="sd">            Name of nuclide in Serpent2 form. For instance, `Am-242m`.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuc_name : str</span>
-<span class="sd">            Name of nuclide in human-readable notation (`Am-242m1`).</span>
-<span class="sd">        nuc_zzaaam : str</span>
-<span class="sd">            Name of nuclide in `zzaaam` form (`952421`).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="nb">str</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">):</span>
-            <span class="n">nuc_code</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzzaaa_to_id</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">nuc_code</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]))</span>
-            <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span>
-            <span class="c1"># at_mass = pydata.atomic_mass(nuc_code_id)</span>
-            <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                    <span class="n">aa</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">aa_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;m1&#39;</span>
-                    <span class="n">aa</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span>
-                <span class="n">nuc_zzaaam</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">zz</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;1&#39;</span>
-            <span class="k">elif</span> <span class="n">aa</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">aa_str</span> <span class="o">=</span> <span class="s1">&#39;nat&#39;</span>
-            <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zz_name</span><span class="p">[</span><span class="n">zz</span><span class="p">]</span> <span class="o">+</span> <span class="n">aa_str</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">meta_flag</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">snum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">meta_flag</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;m&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">meta_flag</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">nuc_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="n">nuc_zzaaam</span> <span class="o">=</span> \
-            <span class="bp">self</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">nuc_name</span><span class="p">,</span> <span class="n">nuc_zzaaam</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.create_nuclide_name_map_zam_to_serpent"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_nuclide_name_map_zam_to_serpent">[docs]</a>    <span class="k">def</span> <span class="nf">create_nuclide_name_map_zam_to_serpent</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Create a map that accepts nuclide names in `zzaaam` format and</span>
-<span class="sd">        returns the Serpent2 nuclide code format. Uses Serpent2 `*.out` file</span>
-<span class="sd">        with list of all nuclides in simulation.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuclide_map : dict of str to str</span>
-<span class="sd">            Contains mapping for nuclide names from `zzaaam` to Serpent2</span>
-<span class="sd">            format imported from Serpent2 ouput file:</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                The key is nuclide name in `zzaaam` format. For example,</span>
-<span class="sd">                `922350` or `982510`.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                Serpent2-oriented name. For instance, 92235.09c for transport</span>
-<span class="sd">                isotope or 982510 for decay only isotope).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">map_dict</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="c1"># Construct path to the *.out File</span>
-        <span class="n">out_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">.out&#39;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">out_file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">str_list</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
-        <span class="c1"># Stop-line</span>
-        <span class="n">end</span> <span class="o">=</span> <span class="s1">&#39; --- Table  2: Reaction and decay data: &#39;</span>
-        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">str_list</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">line</span><span class="p">:</span>
-                <span class="k">continue</span>
-            <span class="k">if</span> <span class="n">end</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                <span class="k">break</span>
-            <span class="k">if</span> <span class="s1">&#39;c  TRA&#39;</span> <span class="ow">in</span> <span class="n">line</span> <span class="ow">or</span> <span class="s1">&#39;c  DEC&#39;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                <span class="n">line</span> <span class="o">=</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
-                <span class="n">iname</span><span class="p">,</span> <span class="n">zzaaam</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
-                <span class="n">map_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">zzaaam</span><span class="p">:</span> <span class="n">line</span><span class="p">[</span><span class="mi">2</span><span class="p">]})</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">map_dict</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.insert_path_to_geometry"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">insert_path_to_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">template_data</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Inserts ``include &lt;first_geometry_file&gt;`` line on the 6th line of</span>
-<span class="sd">        Serpent2 input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user&#39;s template file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings containing modified path to geometry</span>
-<span class="sd">            in user&#39;s template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">template_data</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span>  <span class="c1"># Inserts on 6th line</span>
-                             <span class="s1">&#39;include </span><span class="se">\&quot;</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">geo_files</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\&quot;\n</span><span class="s1">&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_dep_comp"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp">[docs]</a>    <span class="k">def</span> <span class="nf">read_dep_comp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">read_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the Serpent2 `*_dep.m` file and returns a dictionary with</span>
-<span class="sd">        a `Materialflow` object for each burnable material.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        read_at_end : bool, optional</span>
-<span class="sd">            Controls at which moment in the depletion step to read the data.</span>
-<span class="sd">            If `True`, the function reads data at the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function reads data at the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Determine moment in depletion step to read data from</span>
-        <span class="k">if</span> <span class="n">read_at_end</span><span class="p">:</span>
-            <span class="n">moment</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">moment</span> <span class="o">=</span> <span class="mi">0</span>
-
-        <span class="n">dep_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">_dep.m&#39;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-        <span class="n">dep</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_dep</span><span class="p">(</span><span class="n">dep_file</span><span class="p">,</span> <span class="n">make_mats</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">days</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;DAYS&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-        <span class="c1"># Read materials names from the file</span>
-        <span class="n">mat_name</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">mats</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">dep</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">m</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="s1">&#39;MAT_(.+?)_VOLUME&#39;</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">m</span><span class="p">:</span>
-                <span class="n">mat_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">m</span><span class="o">.</span><span class="n">group</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
-        <span class="n">zai</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;ZAI&#39;</span><span class="p">][:</span><span class="o">-</span><span class="mi">2</span><span class="p">]))</span>  <span class="c1"># zzaaam codes of isotopes</span>
-
-        <span class="k">for</span> <span class="n">m</span> <span class="ow">in</span> <span class="n">mat_name</span><span class="p">:</span>
-            <span class="n">volume</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_VOLUME&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-            <span class="n">nucvec</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">zai</span><span class="p">,</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_MDENS&#39;</span><span class="p">][:,</span> <span class="n">moment</span><span class="p">]))</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">nucvec</span><span class="p">)</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_MDENS&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="n">moment</span><span class="p">]</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">*</span> <span class="n">volume</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">volume</span>
-            <span class="n">mats</span><span class="p">[</span><span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">dep</span><span class="p">[</span><span class="s1">&#39;MAT_&#39;</span> <span class="o">+</span> <span class="n">m</span> <span class="o">+</span> <span class="s1">&#39;_BURNUP&#39;</span><span class="p">][</span><span class="n">moment</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">create_nuclide_name_map_zam_to_serpent</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">mats</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_depcode_info"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses initial simulation info data from Serpent2 output and stores</span>
-<span class="sd">        it in the `DepcodeSerpent` object&#39;s ``sim_info`` attributes.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="n">depcode_name</span><span class="p">,</span> <span class="n">depcode_ver</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;VERSION&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_name</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">depcode_ver</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TITLE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INPUT_FILE_NAME&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;WORKING_DIRECTORY&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;XS_DATA_FILE_PATH&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OMP_THREADS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MPI_TASKS&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;OPTIMIZATION_MODE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_depcode_step_param"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param">[docs]</a>    <span class="k">def</span> <span class="nf">read_depcode_step_param</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Parses data from Serpent2 output for each step and stores it in</span>
-<span class="sd">        `DepcodeSerpent` object&#39;s ``param`` attributes.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">parse_res</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s2">&quot;_res.m&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;IMP_KEFF&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;CONVERSION_RATIO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;RUNNING_TIME&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;BURN_DAYS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_POWER&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;MEMSIZE&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">b_l</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="mf">.5</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_BETA_ZERO&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span> <span class="o">=</span> \
-            <span class="n">res</span><span class="p">[</span><span class="s1">&#39;FWD_ANA_LAMBDA&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="n">b_l</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;INI_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span><span class="p">[</span><span class="s1">&#39;TOT_FMASS&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.read_plaintext_file"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_plaintext_file">[docs]</a>    <span class="k">def</span> <span class="nf">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_path</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads the content of a plaintext file for use by other methods.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        file_path : str</span>
-<span class="sd">            Path to file.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        file_data : list</span>
-<span class="sd">            List of strings containing file lines.</span>
-
-<span class="sd">         &quot;&quot;&quot;</span>
-        <span class="n">template_data</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
-            <span class="n">template_data</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.replace_burnup_parameters"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">[docs]</a>    <span class="k">def</span> <span class="nf">replace_burnup_parameters</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">template_data</span><span class="p">,</span>
-            <span class="n">reactor</span><span class="p">,</span>
-            <span class="n">current_depstep_idx</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds or replaces the ``set power P dep daystep DEPSTEP`` line in</span>
-<span class="sd">        the Serpent2 input file. This line defines depletion history and power</span>
-<span class="sd">        levels with respect to the depletion step in the single run and</span>
-<span class="sd">        activates depletion calculation mode.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings parsed from user template file.</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        current_depstep_idx : int</span>
-<span class="sd">            Current depletion step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        template_data : list</span>
-<span class="sd">            List of strings containing modified in this function template file.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">line_idx</span> <span class="o">=</span> <span class="mi">8</span>  <span class="c1"># burnup setting line index by default</span>
-        <span class="n">current_depstep_power</span> <span class="o">=</span> <span class="n">reactor</span><span class="o">.</span><span class="n">power_levels</span><span class="p">[</span><span class="n">current_depstep_idx</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">current_depstep_idx</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">current_depstep</span> <span class="o">=</span> <span class="n">reactor</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">current_depstep</span> <span class="o">=</span> \
-                <span class="n">reactor</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span><span class="p">[</span><span class="n">current_depstep_idx</span><span class="p">]</span> <span class="o">-</span> \
-                <span class="n">reactor</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span><span class="p">[</span><span class="n">current_depstep_idx</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">template_data</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;set    power   &#39;</span><span class="p">):</span>
-                <span class="n">line_idx</span> <span class="o">=</span> <span class="n">template_data</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
-                <span class="k">del</span> <span class="n">template_data</span><span class="p">[</span><span class="n">line_idx</span><span class="p">]</span>
-
-        <span class="n">template_data</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="n">line_idx</span><span class="p">,</span>  <span class="c1"># Insert on 9th line</span>
-                             <span class="s1">&#39;set    power   </span><span class="si">%5.9E</span><span class="s1">   dep daystep   </span><span class="si">%7.5E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                             <span class="p">(</span><span class="n">current_depstep_power</span><span class="p">,</span>
-                              <span class="n">current_depstep</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">template_data</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.run_depcode"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode">[docs]</a>    <span class="k">def</span> <span class="nf">run_depcode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cores</span><span class="p">,</span> <span class="n">nodes</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Runs Serpent2 as a subprocess with the given parameters.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cores: int</span>
-<span class="sd">            Number of cores to use for Serpent2 run (`-omp` flag in Serpent2).</span>
-<span class="sd">        nodes: int</span>
-<span class="sd">            Number of nodes to use for Serpent2 run (`-mpi` flag in Serpent2).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;/projects/sciteam/bahg/&#39;</span><span class="p">):</span>  <span class="c1"># check if BW</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="s1">&#39;aprun&#39;</span><span class="p">,</span>
-                <span class="s1">&#39;-n&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="n">nodes</span><span class="p">),</span>
-                <span class="s1">&#39;-d&#39;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span>
-                <span class="s1">&#39;-omp&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;/apps/exp_ctl/&#39;</span><span class="p">):</span>  <span class="c1"># check if Falcon</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="s1">&#39;mpiexec&#39;</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">,</span>
-                <span class="s1">&#39;-omp&#39;</span><span class="p">,</span>
-                <span class="nb">str</span><span class="p">(</span><span class="mi">18</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">args</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">exec_path</span><span class="p">,</span> <span class="s1">&#39;-omp&#39;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">cores</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span>
-                <span class="n">args</span><span class="p">,</span>
-                <span class="n">cwd</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span>
-                <span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">STDOUT</span><span class="p">)</span>
-        <span class="k">except</span> <span class="n">subprocess</span><span class="o">.</span><span class="n">CalledProcessError</span> <span class="k">as</span> <span class="n">error</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">error</span><span class="o">.</span><span class="n">output</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span>
-            <span class="k">raise</span> <span class="ne">RuntimeError</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1"> </span><span class="si">%s</span><span class="s1"> RUN FAILED</span><span class="se">\n</span><span class="s1"> see error message above&#39;</span>
-                               <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">codename</span><span class="p">))</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Finished Serpent2 Run&#39;</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.convert_nuclide_name_serpent_to_zam"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.convert_nuclide_name_serpent_to_zam">[docs]</a>    <span class="k">def</span> <span class="nf">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nuc_code</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks Serpent2-specific meta stable-flag for zzaaam. For instance,</span>
-<span class="sd">        47310 instead of 471101 for `Ag-110m1`. Metastable isotopes represented</span>
-<span class="sd">        with `aaa` started with ``3``.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        nuc_code : str</span>
-<span class="sd">            Name of nuclide in Serpent2 form. For instance, `47310`.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        nuc_zzaam : int</span>
-<span class="sd">            Name of nuclide in `zzaaam` form (`471101`).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">zz</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">znum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="n">aa</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">anum</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">aa</span> <span class="o">&gt;</span> <span class="mi">300</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">zz</span> <span class="o">&gt;</span> <span class="mi">76</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">100</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">aa_new</span> <span class="o">=</span> <span class="n">aa</span> <span class="o">-</span> <span class="mi">200</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">zz</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">aa_new</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;1&#39;</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">zzaaam</span> <span class="o">=</span> <span class="n">nuc_code</span>
-        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">zzaaam</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.switch_to_next_geometry"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.switch_to_next_geometry">[docs]</a>    <span class="k">def</span> <span class="nf">switch_to_next_geometry</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Inserts line with path to next Serpent geometry file at the</span>
-<span class="sd">        beginning of the Serpent iteration input file.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">geo_line_n</span> <span class="o">=</span> <span class="mi">5</span>
-        <span class="n">f</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">f</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-        <span class="n">current_geo_file</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="n">geo_line_n</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="n">current_geo_idx</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">geo_files</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">current_geo_file</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">new_geo_file</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">geo_files</span><span class="p">[</span><span class="n">current_geo_idx</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">IndexError</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No more geometry files available </span><span class="se">\</span>
-<span class="s1">                  and the system went subcritical </span><span class="se">\n\n</span><span class="s1">&#39;</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Aborting simulation&#39;</span><span class="p">)</span>
-            <span class="k">return</span>
-        <span class="n">new_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">d</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">current_geo_file</span><span class="p">,</span> <span class="n">new_geo_file</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Switching to next geometry file: &#39;</span><span class="p">,</span> <span class="n">new_geo_file</span><span class="p">)</span>
-
-        <span class="n">f</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">new_data</span><span class="p">)</span>
-        <span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.write_depcode_input"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_depcode_input">[docs]</a>    <span class="k">def</span> <span class="nf">write_depcode_input</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">reactor</span><span class="p">,</span>
-            <span class="n">dep_step</span><span class="p">,</span>
-            <span class="n">restart</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes prepared data into the depletion code input file.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        reactor : Reactor</span>
-<span class="sd">            Contains information about power load curve and cumulative</span>
-<span class="sd">            depletion time for the integration test.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-<span class="sd">        restart : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">dep_step</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">restart</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">insert_path_to_geometry</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">change_sim_par</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">create_iter_matfile</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">replace_burnup_parameters</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">reactor</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">data</span><span class="p">:</span>
-            <span class="n">out_file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-            <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-            <span class="n">out_file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="DepcodeSerpent.write_mat_file"><a class="viewcode-back" href="../../src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file">[docs]</a>    <span class="k">def</span> <span class="nf">write_mat_file</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dep_dict</span><span class="p">,</span> <span class="n">dep_end_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Writes the iteration input file containing the burnable materials</span>
-<span class="sd">        composition used in Serpent2 runs and updated after each depletion</span>
-<span class="sd">        step.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dep_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        dep_end_time : float</span>
-<span class="sd">            Current time at the end of the depletion step (d).</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">matf</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%%</span><span class="s1"> Material compositions (after </span><span class="si">%f</span><span class="s1"> days)</span><span class="se">\n\n</span><span class="s1">&#39;</span>
-                   <span class="o">%</span> <span class="n">dep_end_time</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">dep_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;mat  </span><span class="si">%s</span><span class="s1">  </span><span class="si">%5.9E</span><span class="s1"> burn 1 fix </span><span class="si">%3s</span><span class="s1"> </span><span class="si">%4i</span><span class="s1"> vol </span><span class="si">%7.5E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                       <span class="p">(</span><span class="n">key</span><span class="p">,</span>
-                        <span class="o">-</span><span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">,</span>
-                        <span class="s1">&#39;09c&#39;</span><span class="p">,</span>
-                        <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">temp</span><span class="p">,</span>
-                        <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">))</span>
-            <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">dep_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># Transforms iso name from zas to zzaaam and then to SERPENT</span>
-                <span class="n">iso_name_serpent</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">zzaaam</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)</span>
-                <span class="n">matf</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;           </span><span class="si">%9s</span><span class="s1">  </span><span class="si">%7.14E</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span>
-                           <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="n">iso_name_serpent</span><span class="p">],</span>
-                            <span class="o">-</span><span class="n">wt_frac</span><span class="p">))</span>
-        <span class="n">matf</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div></div>
-</pre></div>
-
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-  <h1>Source code for saltproc.materialflow</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">pyne.material</span> <span class="kn">import</span> <span class="n">Material</span> <span class="k">as</span> <span class="n">pymat</span>
-<span class="kn">import</span> <span class="nn">copy</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">Counter</span>
-
-
-<div class="viewcode-block" id="Materialflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">[docs]</a><span class="k">class</span> <span class="nc">Materialflow</span><span class="p">(</span><span class="n">pymat</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Class contains information about burnable material flow. Based on PyNE</span>
-<span class="sd">        Material.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Materialflow.__init__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">mass</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">density</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">atoms_per_molecule</span><span class="o">=-</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">metadata</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">vol</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-            <span class="n">temp</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span>
-            <span class="n">mass_flowrate</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-            <span class="n">void_frac</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span>
-            <span class="n">burnup</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Materialflow object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        PyNE.Material : class</span>
-<span class="sd">            PyNE Material parent class containing nuclide vector, density,</span>
-<span class="sd">            mass, atoms_per_molecule, metadata</span>
-<span class="sd">        temp : float</span>
-<span class="sd">            temperature of the material flow (K)</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        void_frac : float</span>
-<span class="sd">            void fraction in the material (%)</span>
-<span class="sd">        burnup : float</span>
-<span class="sd">            material burnup at the end of depletion step [MWd/kgU]</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize parent class attributes</span>
-        <span class="c1"># super().__init__()</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">vol</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">temp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">mass_flowrate</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="n">void_frac</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="n">burnup</span></div>
-
-<div class="viewcode-block" id="Materialflow.get_mass"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">[docs]</a>    <span class="k">def</span> <span class="nf">get_mass</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns total mass of the material descibed in Materialflow object.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        float</span>
-<span class="sd">            The mass of the object.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span></div>
-
-<div class="viewcode-block" id="Materialflow.print_attr"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">[docs]</a>    <span class="k">def</span> <span class="nf">print_attr</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Prints various attributes of Materialflow object.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Volume </span><span class="si">%f</span><span class="s2"> cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Density </span><span class="si">%f</span><span class="s2"> g/cm3&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Atoms per molecule </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Meta </span><span class="si">%s</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Mass flowrate </span><span class="si">%f</span><span class="s2"> g/s&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Temperature </span><span class="si">%f</span><span class="s2"> K&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Void fraction </span><span class="si">%f</span><span class="s2"> &quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">void_frac</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Burnup </span><span class="si">%f</span><span class="s2"> MWd/kgU&quot;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">burnup</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Materialflow.scale_matflow"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">[docs]</a>    <span class="k">def</span> <span class="nf">scale_matflow</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">f</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns nuclide vector dictionary, obtained from object attrs and</span>
-<span class="sd">        then scaled by factor.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        f : float</span>
-<span class="sd">            Scaling factor.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        new_mat_comp : dict of int to float</span>
-<span class="sd">            Materialflow nuclide component dictionary of relative mass.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                The keys are preserved from PyNE Material (integers</span>
-<span class="sd">                representing nuclides in id-form).</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                Each nuclide&#39;s mass fraction, multiplied by</span>
-<span class="sd">                factor f.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">old_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">comp</span><span class="p">)</span>
-        <span class="n">new_mat_comp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">old_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">new_mat_comp</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">*</span> <span class="n">value</span>
-        <span class="k">return</span> <span class="n">new_mat_comp</span></div>
-
-<div class="viewcode-block" id="Materialflow.copy_pymat_attrs"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">[docs]</a>    <span class="k">def</span> <span class="nf">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">src</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Copies PyNE attributites from source object (`src`) to target</span>
-<span class="sd">        object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        src : obj</span>
-<span class="sd">            Materialflow object to copy attributes from.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">density</span><span class="p">))</span>
-        <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                <span class="s1">&#39;atoms_per_molecule&#39;</span><span class="p">,</span>
-                <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">src</span><span class="o">.</span><span class="n">atoms_per_molecule</span><span class="p">))</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">metadata</span> <span class="o">=</span> <span class="n">src</span><span class="o">.</span><span class="n">metadata</span></div>
-
-<div class="viewcode-block" id="Materialflow.__deepcopy__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">[docs]</a>    <span class="k">def</span> <span class="nf">__deepcopy__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">memo</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return a deep copy of compound object `self`.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        self : obj</span>
-<span class="sd">            Compound object.</span>
-<span class="sd">        memo : dict, optional</span>
-<span class="sd">            Id-to-object correspondence to control for recursion.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            New compound object copied from `self`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Initiate new object my copying class from self</span>
-        <span class="bp">cls</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="c1"># Copy nuclide vector from self</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">scale_matflow</span><span class="p">())</span>
-        <span class="c1"># Copy Materialflow density and atoms_per_molecule</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">copy_pymat_attrs</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-        <span class="c1"># Copy other object attributes such as volume, burnup, etc</span>
-        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="k">if</span> <span class="s1">&#39;comp&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">k</span><span class="p">:</span>
-                <span class="nb">setattr</span><span class="p">(</span><span class="n">result</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">v</span><span class="p">))</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__eq__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">[docs]</a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python ``=`` operation to compare two Materialflow</span>
-<span class="sd">        objects. Compares objects total mass, density, atoms_per_molecule,</span>
-<span class="sd">        temperature, mass flowrate, and masses of important isotopes:</span>
-<span class="sd">        uranium-235 and uranium-238.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        other : obj</span>
-<span class="sd">            Materialflow object to compare with.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            Are the objects equal?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">Materialflow</span><span class="p">):</span>
-            <span class="c1"># don&#39;t attempt to compare against unrelated types</span>
-            <span class="k">return</span> <span class="bp">NotImplemented</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">vol</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">density</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">atoms_per_molecule</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">atoms_per_molecule</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">temp</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">mass_flowrate</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> \
-            <span class="ow">and</span> <span class="bp">self</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span> <span class="o">==</span> <span class="n">other</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span></div>
-    <span class="c1">#</span>
-    <span class="c1"># Materialflow math operation Overloads</span>
-    <span class="c1">#</span>
-
-<div class="viewcode-block" id="Materialflow.__add__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">[docs]</a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python adding operation for Materialflow objects.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        x : obj</span>
-<span class="sd">            Materialflow object #1.</span>
-<span class="sd">        y : obj</span>
-<span class="sd">            Materialflow object #2.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            Materialflow which is a sum of isotope masses from `x` and `y`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">cls</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="vm">__class__</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span>
-        <span class="n">x_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-        <span class="n">y_comp</span> <span class="o">=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
-        <span class="n">x_comp</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">y_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">x_comp</span><span class="p">)</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass  # averaged</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">temp</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">temp</span>
-        <span class="c1"># Burnup is simply averaged by should be renormilized by heavy metal</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">burnup</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">mass</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">burnup</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span>
-        <span class="c1"># result.density = result.mass/result.vol</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">density</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">density</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">=</span> <span class="p">(</span>
-            <span class="n">x</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">x</span><span class="o">.</span><span class="n">vol</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">void_frac</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">vol</span><span class="p">)</span> <span class="o">/</span> <span class="n">result</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">return</span> <span class="n">result</span></div>
-
-<div class="viewcode-block" id="Materialflow.__rmul__"><a class="viewcode-back" href="../../src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">[docs]</a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scaling_factor</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides Python multiplication operation for Materialflow objects.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        scaling_factor : float or int</span>
-<span class="sd">            Scaling factor.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        obj</span>
-<span class="sd">            Materialflow object which has mass of each isotope and</span>
-<span class="sd">            mass_flowrate scaled by `other`.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">scaling_factor</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-            <span class="n">result</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">vol</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">vol</span>
-            <span class="n">result</span><span class="o">.</span><span class="n">mass_flowrate</span> <span class="o">=</span> <span class="n">scaling_factor</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">mass_flowrate</span>
-            <span class="c1"># result.temp = (x.temp*x.mass + y.temp*y.mass)/result.mass</span>
-            <span class="k">return</span> <span class="n">result</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">NotImplemented</span></div></div>
-</pre></div>
-
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-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
-    <span class="fa fa-caret-down"></span>
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-             
-  <h1>Source code for saltproc.process</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Materialflow</span>
-<span class="kn">from</span> <span class="nn">pyne</span> <span class="kn">import</span> <span class="n">nucname</span> <span class="k">as</span> <span class="n">pyname</span>
-<span class="kn">from</span> <span class="nn">math</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<div class="viewcode-block" id="Process"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process">[docs]</a><span class="k">class</span> <span class="nc">Process</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Class describes process which must be applied to Materialflow to change</span>
-<span class="sd">     burnable material composition.</span>
-<span class="sd">     &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Process.__init__"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Process object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mass_flowrate : float</span>
-<span class="sd">            mass flow rate of the material flow (g/s)</span>
-<span class="sd">        capacity : float</span>
-<span class="sd">            maximum mass flow rate of the material flow which current process</span>
-<span class="sd">            can handle (g/s)</span>
-<span class="sd">        volume : float</span>
-<span class="sd">            total volume of the current facility (:math:`cm^3`)</span>
-<span class="sd">        efficiency : dict of str to float</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                element name for removal (not isotope)</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficency for the isotope (weight fraction)</span>
-<span class="sd">        optional_parameter : float</span>
-<span class="sd">            user can define any castom parameter in the input file describing</span>
-<span class="sd">            processes and use it in efficiency function</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">dictionary</span> <span class="ow">in</span> <span class="n">initial_data</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">dictionary</span><span class="p">:</span>
-                <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">dictionary</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="nb">setattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">])</span></div>
-
-<div class="viewcode-block" id="Process.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Based on data from json file with Processes description calculate</span>
-<span class="sd">        value (float) of the removal efficiency. If it was str describing</span>
-<span class="sd">        efficiecny as a function (eps(x,m,t,P,L)) then calculating value. If it</span>
-<span class="sd">        constant (float in processes.json) then just keep it as is.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">eps</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">eps</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">attr</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="k">if</span> <span class="n">attr</span> <span class="ow">in</span> <span class="n">eps</span><span class="p">:</span>
-                    <span class="n">eps</span> <span class="o">=</span> <span class="n">eps</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">attr</span><span class="p">,</span> <span class="s2">&quot;self.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">attr</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">eps</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">eps</span><span class="p">)</span>
-        <span class="n">efficiency</span> <span class="o">=</span> <span class="nb">eval</span><span class="p">(</span><span class="n">eps</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">efficiency</span></div>
-
-<div class="viewcode-block" id="Process.check_mass_conservation"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">[docs]</a>    <span class="k">def</span> <span class="nf">check_mass_conservation</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checking that Process.outflow + Process.waste_stream is equal</span>
-<span class="sd">        Process.inflow and the total mass is being conserved. Returns `True` if</span>
-<span class="sd">        the mass conserved or `False` if its mismatched.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">out_stream</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">outflow</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">waste_stream</span>
-        <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_array_equal</span><span class="p">(</span><span class="n">out_stream</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">inflow</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Process.rem_elements"><a class="viewcode-back" href="../../src/saltproc.process.html#saltproc.process.Process.rem_elements">[docs]</a>    <span class="k">def</span> <span class="nf">rem_elements</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">inflow</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Updates Materialflow object `inflow` after removal target isotopes</span>
-<span class="sd">        with specific efficiency in single component of fuel reprocessing</span>
-<span class="sd">        system and returns waste stream Materialflow object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        inflow : Materialflow obj</span>
-<span class="sd">            Target material stream to remove poisons from.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        Materialflow object</span>
-<span class="sd">            Waste stream from the reprocessing system component.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">waste_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">out_nucvec</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="c1"># print(&quot;Xe concentration in inflow before % f g&quot; % inflow[&#39;Xe136&#39;])</span>
-        <span class="c1"># print(&quot;Current time %f&quot; % (t))</span>
-        <span class="k">for</span> <span class="n">iso</span> <span class="ow">in</span> <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">el_name</span> <span class="o">=</span> <span class="n">pyname</span><span class="o">.</span><span class="n">serpent</span><span class="p">(</span><span class="n">iso</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">if</span> <span class="n">el_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">:</span>
-                <span class="c1"># Evaluate removal efficiency for el_name (float)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">calc_rem_efficiency</span><span class="p">(</span><span class="n">el_name</span><span class="p">)</span>
-                <span class="n">out_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span> <span class="o">*</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="mf">1.0</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">])</span>
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> \
-                    <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="n">el_name</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">out_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="n">iso</span><span class="p">])</span>
-                <span class="n">waste_nucvec</span><span class="p">[</span><span class="n">iso</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>  <span class="c1"># zeroes everywhere else</span>
-        <span class="n">waste</span> <span class="o">=</span> <span class="n">Materialflow</span><span class="p">(</span><span class="n">waste_nucvec</span><span class="p">)</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">inflow</span><span class="o">.</span><span class="n">mass</span> <span class="o">-</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">comp</span> <span class="o">=</span> <span class="n">out_nucvec</span>
-        <span class="n">inflow</span><span class="o">.</span><span class="n">norm_comp</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Xe concentration in inflow after </span><span class="si">%f</span><span class="s2"> g&quot;</span> <span class="o">%</span> <span class="n">inflow</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">])</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Waste mass </span><span class="si">%f</span><span class="s2"> g</span><span class="se">\n</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-        <span class="k">del</span> <span class="n">out_nucvec</span><span class="p">,</span> <span class="n">waste_nucvec</span><span class="p">,</span> <span class="n">el_name</span>
-        <span class="k">return</span> <span class="n">waste</span></div></div>
-</pre></div>
-
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-  <h1>Source code for saltproc.separator</h1><div class="highlight"><pre>
-<span></span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-
-
-<div class="viewcode-block" id="Separator"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator">[docs]</a><span class="k">class</span> <span class="nc">Separator</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Class evaluates gas removal efficiency in separator (bubble separator).</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    q_salt : float</span>
-<span class="sd">        volumetric salt flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    q_he : float</span>
-<span class="sd">        volumetric helium flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.005</span>
-<span class="sd">    do : float</span>
-<span class="sd">        gas outlet diameter (m)</span>
-<span class="sd">        Ranging from 1~3cm in our simulations</span>
-<span class="sd">        Default: 0.02</span>
-<span class="sd">    dp : float</span>
-<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    db : float</span>
-<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">        Default: 0.001</span>
-<span class="sd">    deltap : float</span>
-<span class="sd">        Pressure difference between the inlet and the gas outlet (Pa)</span>
-<span class="sd">        (from 2e5 to 5e5 Pa)</span>
-<span class="sd">        Default: 4e5</span>
-<span class="sd">    temp_room: real</span>
-<span class="sd">        room temperature (Kelvin)</span>
-<span class="sd">        Default: 900</span>
-<span class="sd">    k : float</span>
-<span class="sd">        Slope of the initial swirling (use 1 for this).</span>
-
-<span class="sd">    Methods</span>
-<span class="sd">    -------</span>
-<span class="sd">    eff()</span>
-<span class="sd">        Evaluates gas removal efficiency from Jiaqi&#39;s correlation. [1]</span>
-<span class="sd">    description()</span>
-<span class="sd">        Contains a dictionary of plot properties.</span>
-<span class="sd">    calc_rem_efficiency(el_name)</span>
-<span class="sd">        Overrides exiting method in Parent class.</span>
-
-<span class="sd">    References</span>
-<span class="sd">    ----------</span>
-<span class="sd">    [1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
-<span class="sd">    Sensitivity Analysis. In preparation</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">k</span> <span class="o">=</span> <span class="mf">1.0</span>
-
-<div class="viewcode-block" id="Separator.__init__"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">do</span><span class="o">=</span><span class="mf">0.02</span><span class="p">,</span> <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span>
-                 <span class="n">deltap</span><span class="o">=</span><span class="mf">4e5</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Separator object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        do : float</span>
-<span class="sd">            gas outlet diameter (m)</span>
-<span class="sd">            Ranging from 1~3cm in our simulations</span>
-<span class="sd">            Default: 0.02</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        deltap : float</span>
-<span class="sd">            Pressure difference between the inlet and the gas outlet (Pa)</span>
-<span class="sd">            (from 2e5 to 5e5 Pa)</span>
-<span class="sd">            Default: 4e5</span>
-<span class="sd">        temp_room: real</span>
-<span class="sd">            room temperature (Kelvin)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        jl : float</span>
-<span class="sd">            liquid superficial velocity (m/s)</span>
-<span class="sd">        alpha : float</span>
-<span class="sd">            void fraction</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values from Jiaqi&#39;s simulation</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">=</span> <span class="n">q_he</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">=</span> <span class="n">do</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">deltap</span> <span class="o">=</span> <span class="n">deltap</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">db</span> <span class="o">=</span> <span class="n">db</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">=</span> <span class="n">dp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">=</span> <span class="n">temp_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">jl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Separator.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides the existing method in Process class to provide</span>
-<span class="sd">        efficiency values of target isotopes calculated in eff() function.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">el_name</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">efficiency</span></div>
-
-<div class="viewcode-block" id="Separator.description"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in</span>
-<span class="sd">        sensitivity analysis</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        ------</span>
-<span class="sd">        pltdict: dict of str to str</span>
-<span class="sd">            contains instances&#39; information</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">plt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;q_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;salt flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;q_he&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;helium flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;do&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;gas outlet diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;dp&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;pipe diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;db&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;deltap&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;pressure difference ${(Pa)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;temp_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;average salt temperature ${(K)}$&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble separation efficiency (%)&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;sep_eff&#39;</span><span class="p">}</span>
-                    <span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">plt_dict</span></div>
-
-<div class="viewcode-block" id="Separator.eff"><a class="viewcode-back" href="../../src/saltproc.separator.html#saltproc.separator.Separator.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Evaluates gas/bubble separation efficiency from Jiaqi&#39;s correlation</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        rem_eff : dict of str to float</span>
-<span class="sd">            Dictionary that contains removal efficiency of each target</span>
-<span class="sd">            element.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of target isotope.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficiency.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">dc</span> <span class="o">=</span> <span class="mf">3.41</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">do</span>
-        <span class="n">mu</span> <span class="o">=</span> <span class="mf">1.076111581e-2</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="mi">1000</span><span class="p">)</span><span class="o">**</span><span class="p">(</span><span class="o">-</span><span class="mf">4.833549134</span><span class="p">)</span>
-        <span class="n">rho</span> <span class="o">=</span> <span class="p">(</span><span class="mf">6.105</span> <span class="o">-</span> <span class="mf">0.001272</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span><span class="p">)</span> <span class="o">*</span> <span class="mi">1000</span>
-        <span class="n">nu</span> <span class="o">=</span> <span class="n">mu</span> <span class="o">/</span> <span class="n">rho</span>
-        <span class="n">vl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="n">number_re</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="n">vl</span> <span class="o">/</span> <span class="n">nu</span>
-        <span class="n">etha</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="mf">3.2</span> <span class="o">*</span> <span class="n">rho</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">jl</span><span class="o">**</span><span class="mi">2</span> <span class="o">*</span> <span class="n">dc</span><span class="o">**</span><span class="mi">2</span> <span class="o">/</span>
-                    <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">do</span><span class="o">**</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltap</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">dvoid</span> <span class="o">=</span> <span class="p">(</span><span class="mf">4.89</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">db</span><span class="p">)</span><span class="o">**</span><span class="mf">1.27</span><span class="p">)</span> <span class="o">/</span>\
-                <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">k</span><span class="o">**</span><span class="mi">4</span> <span class="o">*</span> <span class="n">number_re</span><span class="p">)</span>
-        <span class="n">df</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">do</span> <span class="o">+</span> <span class="n">dvoid</span> <span class="o">/</span> <span class="p">(</span><span class="mi">100</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span><span class="p">)</span><span class="o">**</span><span class="mf">0.5</span><span class="p">)</span>
-        <span class="n">sep_eff</span> <span class="o">=</span> <span class="n">df</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mf">0.23</span> <span class="o">*</span> <span class="n">etha</span><span class="p">)</span> <span class="o">+</span> <span class="mf">3.26</span> <span class="o">*</span> <span class="n">etha</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">df</span><span class="p">)</span> <span class="o">*</span> <span class="n">df</span>
-        <span class="n">rem_eff</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="n">sep_eff</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">rem_eff</span></div></div>
-
-
-<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="n">Separator</span><span class="p">()</span><span class="o">.</span><span class="n">eff</span><span class="p">())</span>
-</pre></div>
-
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diff --git a/v0.4.0/_modules/saltproc/simulation.html b/v0.4.0/_modules/saltproc/simulation.html
deleted file mode 100644
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-      <li class="breadcrumb-item active">saltproc.simulation</li>
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.simulation</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">tables</span> <span class="k">as</span> <span class="nn">tb</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">OrderedDict</span>
-
-
-<div class="viewcode-block" id="Simulation"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation">[docs]</a><span class="k">class</span> <span class="nc">Simulation</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;Class for handling simulation information. Contains information</span>
-<span class="sd">    for running simulation wiht parallelism. Also contains the simulation</span>
-<span class="sd">    name, a `Depcode` object, and the filename for the simulation database.</span>
-<span class="sd">    Contains methods to store simulation metadata and depletion results in</span>
-<span class="sd">    a database, predict reactor criticality at next depletion step, and</span>
-<span class="sd">    switch simulation geometry.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-<div class="viewcode-block" id="Simulation.__init__"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span>
-            <span class="bp">self</span><span class="p">,</span>
-            <span class="n">sim_name</span><span class="o">=</span><span class="s2">&quot;default&quot;</span><span class="p">,</span>
-            <span class="n">sim_depcode</span><span class="o">=</span><span class="s2">&quot;depcode&quot;</span><span class="p">,</span>
-            <span class="n">core_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-            <span class="n">node_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-            <span class="n">db_path</span><span class="o">=</span><span class="s2">&quot;db_saltproc.h5&quot;</span><span class="p">,</span>
-            <span class="n">restart_flag</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
-            <span class="n">adjust_geo</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
-            <span class="n">compression_params</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Filters</span><span class="p">(</span><span class="n">complevel</span><span class="o">=</span><span class="mi">9</span><span class="p">,</span>
-                                          <span class="n">complib</span><span class="o">=</span><span class="s1">&#39;blosc&#39;</span><span class="p">,</span>
-                                          <span class="n">fletcher32</span><span class="o">=</span><span class="kc">True</span><span class="p">),</span>
-    <span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initializes the Simulation object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sim_name : str</span>
-<span class="sd">            Name to identify the simulation. May contain information such as</span>
-<span class="sd">            the number of a reference case, a paper name, or some other</span>
-<span class="sd">            specific information identify the simulation.</span>
-<span class="sd">        sim_depcode : `Depcode` object</span>
-<span class="sd">            An instance of one of the `Depcode` child classes</span>
-<span class="sd">        cores : int</span>
-<span class="sd">            Number of cores to use for depletion code run (`-omp` flag in</span>
-<span class="sd">            Serpent).</span>
-<span class="sd">        nodes : int</span>
-<span class="sd">            Number of nodes to use for depletion code run (`-mpi` flag in</span>
-<span class="sd">            Serpent).</span>
-<span class="sd">        db_path : str</span>
-<span class="sd">            Path of HDF5 database that stores simulation information and</span>
-<span class="sd">            data.</span>
-<span class="sd">        restart_flag : bool</span>
-<span class="sd">            This value determines our initial condition. If `True`, then</span>
-<span class="sd">            then we run the simulation starting from the inital material</span>
-<span class="sd">            composition in the material input file inside our `depcode`</span>
-<span class="sd">            object. If `False`, then we runthe simulation starting from</span>
-<span class="sd">            the final material composition resulting within the `.h5`</span>
-<span class="sd">            database.</span>
-<span class="sd">        adjust_geo : bool</span>
-<span class="sd">            This value determines if we switch reactor geometry when keff</span>
-<span class="sd">            drops below 1.0</span>
-<span class="sd">        compression_params : Pytables filter object</span>
-<span class="sd">            Compression parameters for HDF5 database.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># initialize all object attributes</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_name</span> <span class="o">=</span> <span class="n">sim_name</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span> <span class="o">=</span> <span class="n">sim_depcode</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">core_number</span> <span class="o">=</span> <span class="n">core_number</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">node_number</span> <span class="o">=</span> <span class="n">node_number</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">restart_flag</span> <span class="o">=</span> <span class="n">restart_flag</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">adjust_geo</span> <span class="o">=</span> <span class="n">adjust_geo</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span> <span class="o">=</span> <span class="n">compression_params</span></div>
-
-<div class="viewcode-block" id="Simulation.check_restart"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.check_restart">[docs]</a>    <span class="k">def</span> <span class="nf">check_restart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;If the user set `restart_flag`</span>
-<span class="sd">        for `False` clean out iteration files and database from previous run.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        restart_flag : bool</span>
-<span class="sd">            Is the current simulation restarted?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">restart_flag</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">)</span>
-                <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-                <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Previous run output files were deleted.&quot;</span><span class="p">)</span>
-            <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
-                <span class="k">pass</span></div>
-
-<div class="viewcode-block" id="Simulation.store_after_repr"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">[docs]</a>    <span class="k">def</span> <span class="nf">store_after_repr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">after_mats</span><span class="p">,</span> <span class="n">waste_dict</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Add data for waste streams [grams per depletion step] of each</span>
-<span class="sd">        process to the HDF5 database after reprocessing.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        after_mats : `Materialflow`</span>
-<span class="sd">            `Materialflow` object representing a material stream after</span>
-<span class="sd">            performing reprocessing.</span>
-<span class="sd">        waste_dict : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that maps `Process` objects to waste `Materialflow`</span>
-<span class="sd">            objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                `Process` name (`str`)</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object containing waste streams data.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion time step.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">streams_gr</span> <span class="o">=</span> <span class="s1">&#39;in_out_streams&#39;</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
-            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
-            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">mn</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>  <span class="c1"># iterate over materials</span>
-            <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">mn</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">):</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span>
-                    <span class="n">mat_node</span><span class="p">,</span>
-                    <span class="n">streams_gr</span><span class="p">,</span>
-                    <span class="s1">&#39;Waste Material streams data for each process&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">waste_group</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">streams_gr</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">proc</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-                <span class="c1"># proc_node = db.create_group(waste_group, proc)</span>
-                <span class="c1"># iso_idx[proc] = OrderedDict()</span>
-                <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-                <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="c1"># Read isotopes from Materialflow</span>
-                <span class="k">for</span> <span class="n">nuc</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                    <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                    <span class="n">iso_idx</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">nuc</span><span class="p">)[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">coun</span>
-                    <span class="c1"># Convert wt% to absolute [user units]</span>
-                    <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">waste_dict</span><span class="p">[</span><span class="n">mn</span><span class="p">][</span><span class="n">proc</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                    <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
-                <span class="c1"># Try to open EArray and table and if not exist - create</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">waste_group</span><span class="p">,</span> <span class="n">proc</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
-                        <span class="n">waste_group</span><span class="p">,</span>
-                        <span class="n">proc</span><span class="p">,</span>
-                        <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                        <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">)),</span>
-                        <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">proc</span><span class="p">)</span>
-                    <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                    <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
-                <span class="k">del</span> <span class="n">iso_wt_frac</span>
-                <span class="k">del</span> <span class="n">iso_idx</span>
-        <span class="c1"># Also save materials AFTER reprocessing and refill here</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">after_mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_mat_data"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">[docs]</a>    <span class="k">def</span> <span class="nf">store_mat_data</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mats</span><span class="p">,</span> <span class="n">dep_step</span><span class="p">,</span> <span class="n">store_at_end</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Initialize the HDF5/Pytables database (if it doesn&#39;t exist) or</span>
-<span class="sd">        append the following data at the current depletion step to the</span>
-<span class="sd">        database: burnable material composition, mass, density, volume,</span>
-<span class="sd">        temperature, burnup,  mass_flowrate, void_fraction.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mats : dict of str to Materialflow</span>
-<span class="sd">            Dictionary that contains `Materialflow` objects.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of burnable material.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                `Materialflow` object holding composition and properties.</span>
-<span class="sd">        dep_step : int</span>
-<span class="sd">            Current depletion step.</span>
-<span class="sd">        store_at_end : bool, optional</span>
-<span class="sd">            Controls at which moment in the depletion step to store data from.</span>
-<span class="sd">            If `True`, the function stores data from the end of the</span>
-<span class="sd">            depletion step. Otherwise, the function stores data from the</span>
-<span class="sd">            beginning of the depletion step.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># Determine moment in depletion step from which to store data</span>
-        <span class="k">if</span> <span class="n">store_at_end</span><span class="p">:</span>
-            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="s2">&quot;after_reproc&quot;</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">dep_step_str</span> <span class="o">=</span> <span class="s2">&quot;before_reproc&quot;</span>
-
-        <span class="c1"># Moment when store compositions</span>
-        <span class="n">iso_idx</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-        <span class="c1"># numpy array row storage data for material physical properties</span>
-        <span class="n">mpar_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
-            <span class="p">(</span><span class="s1">&#39;mass&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;density&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;volume&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;temperature&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;mass_flowrate&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;void_fraction&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;burnup&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
-        <span class="p">])</span>
-
-        <span class="nb">print</span><span class="p">(</span>
-            <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Storing material data for depletion step #</span><span class="si">%i</span><span class="s1">.&#39;</span> <span class="o">%</span>
-            <span class="p">(</span><span class="n">dep_step</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
-            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
-            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;materials&#39;</span><span class="p">):</span>
-            <span class="n">comp_group</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span>
-                                         <span class="s1">&#39;materials&#39;</span><span class="p">,</span>
-                                         <span class="s1">&#39;Material data&#39;</span><span class="p">)</span>
-        <span class="c1"># Iterate over all materials</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">mats</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span>
-            <span class="n">iso_wt_frac</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">coun</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="c1"># Create group for each material</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">comp_group</span><span class="p">,</span>
-                                <span class="n">key</span><span class="p">)</span>
-            <span class="c1"># Create group for composition and parameters before reprocessing</span>
-            <span class="n">mat_node</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">):</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">create_group</span><span class="p">(</span><span class="n">mat_node</span><span class="p">,</span>
-                                <span class="n">dep_step_str</span><span class="p">,</span>
-                                <span class="s1">&#39;Material data before reprocessing&#39;</span><span class="p">)</span>
-            <span class="n">comp_pfx</span> <span class="o">=</span> <span class="s1">&#39;/materials/&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">dep_step_str</span>
-            <span class="c1"># Read isotopes from Materialflow for material</span>
-            <span class="k">for</span> <span class="n">nuc_code</span><span class="p">,</span> <span class="n">wt_frac</span> <span class="ow">in</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">comp</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="c1"># Dictonary in format {isotope_name : index(int)}</span>
-                <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="n">nuc_code</span><span class="p">)[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">coun</span>
-                <span class="c1"># Convert wt% to absolute [user units]</span>
-                <span class="n">iso_wt_frac</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">wt_frac</span> <span class="o">*</span> <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">)</span>
-                <span class="n">coun</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="c1"># Store information about material properties in new array row</span>
-            <span class="n">mpar_row</span> <span class="o">=</span> <span class="p">(</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">density</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">vol</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">temp</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">mass_flowrate</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">void_frac</span><span class="p">,</span>
-                <span class="n">mats</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">burnup</span>
-            <span class="p">)</span>
-            <span class="n">mpar_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">mpar_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">mpar_dtype</span><span class="p">)</span>
-            <span class="c1"># Try to open EArray and table and if not exist - create new one</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">comp_pfx</span><span class="p">,</span> <span class="s1">&#39;comp&#39;</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">earr</span><span class="o">.</span><span class="n">title</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; array exist, appending data.&#39;</span><span class="p">)</span>
-                <span class="n">mpar_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">comp_pfx</span><span class="p">,</span> <span class="s1">&#39;parameters&#39;</span><span class="p">)</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span>
-                    <span class="s1">&#39;Material &#39;</span> <span class="o">+</span>
-                    <span class="n">key</span> <span class="o">+</span>
-                    <span class="s1">&#39; array is not exist, making new one.&#39;</span><span class="p">)</span>
-                <span class="n">earr</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_earray</span><span class="p">(</span>
-                    <span class="n">comp_pfx</span><span class="p">,</span>
-                    <span class="s1">&#39;comp&#39;</span><span class="p">,</span>
-                    <span class="n">atom</span><span class="o">=</span><span class="n">tb</span><span class="o">.</span><span class="n">Float64Atom</span><span class="p">(),</span>
-                    <span class="n">shape</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">])),</span>
-                    <span class="n">title</span><span class="o">=</span><span class="s2">&quot;Isotopic composition for </span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">key</span><span class="p">)</span>
-                <span class="c1"># Save isotope indexes map and units in EArray attributes</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">flavor</span> <span class="o">=</span> <span class="s1">&#39;python&#39;</span>
-                <span class="n">earr</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">iso_map</span> <span class="o">=</span> <span class="n">iso_idx</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
-                <span class="c1"># Create table for material Parameters</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Creating &#39;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s1">&#39; parameters table.&#39;</span><span class="p">)</span>
-                <span class="n">mpar_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                    <span class="n">comp_pfx</span><span class="p">,</span>
-                    <span class="s1">&#39;parameters&#39;</span><span class="p">,</span>
-                    <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">mpar_dtype</span><span class="p">),</span>
-                    <span class="s2">&quot;Material parameters data&quot;</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Dumping Material </span><span class="si">%s</span><span class="s1"> data </span><span class="si">%s</span><span class="s1"> to </span><span class="si">%s</span><span class="s1">.&#39;</span> <span class="o">%</span>
-                  <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">dep_step_str</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">)))</span>
-            <span class="c1"># Add row for the timestep to EArray and Material Parameters table</span>
-            <span class="n">earr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">iso_wt_frac</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span>
-            <span class="n">mpar_table</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">mpar_array</span><span class="p">)</span>
-            <span class="k">del</span> <span class="p">(</span><span class="n">iso_wt_frac</span><span class="p">)</span>
-            <span class="k">del</span> <span class="p">(</span><span class="n">mpar_array</span><span class="p">)</span>
-            <span class="n">mpar_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_run_step_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_step_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds the following depletion code and SaltProc simulation</span>
-<span class="sd">        data at the current depletion step to the database:</span>
-<span class="sd">        execution time, memory usage, multiplication factor, breeding ratio,</span>
-<span class="sd">        delayed neutron precursor data, fission mass, cumulative depletion</span>
-<span class="sd">        time, power level.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="c1"># Read info from depcode _res.m File</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_step_param</span><span class="p">()</span>
-        <span class="c1"># Initialize beta groups number</span>
-        <span class="n">b_g</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">])</span>
-        <span class="c1"># numpy array row storage for run info</span>
-        <span class="k">class</span> <span class="nc">Step_info</span><span class="p">(</span><span class="n">tb</span><span class="o">.</span><span class="n">IsDescription</span><span class="p">):</span>
-            <span class="n">keff_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">keff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">breeding_ratio</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="mi">2</span><span class="p">,))</span>
-            <span class="n">step_execution_time</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">cumulative_time_at_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">power_level</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">memory_usage</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">beta_eff_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-            <span class="n">delayed_neutrons_lambda_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">((</span><span class="n">b_g</span><span class="p">,</span> <span class="mi">2</span><span class="p">))</span>
-            <span class="n">fission_mass_bds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-            <span class="n">fission_mass_eds</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">Float32Col</span><span class="p">()</span>
-        <span class="c1"># Open or restore db and append data to it</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
-            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
-            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">step_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;simulation_parameters&#39;</span><span class="p">)</span>
-            <span class="c1"># Read burn_time from previous step</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">=</span> <span class="n">step_info_table</span><span class="o">.</span><span class="n">col</span><span class="p">(</span><span class="s1">&#39;cumulative_time_at_eds&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="n">step_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;simulation_parameters&#39;</span><span class="p">,</span>
-                <span class="n">Step_info</span><span class="p">,</span>  <span class="c1"># self.sim_depcode.Step_info,</span>
-                <span class="s2">&quot;Simulation parameters after each timestep&quot;</span><span class="p">)</span>
-            <span class="c1"># Intializing burn_time array at the first depletion step</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;burn_days&#39;</span><span class="p">]</span>
-        <span class="c1"># Define row of table as step_info</span>
-        <span class="n">step_info</span> <span class="o">=</span> <span class="n">step_info_table</span><span class="o">.</span><span class="n">row</span>
-        <span class="c1"># Define all values in the row</span>
-
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;step_execution_time&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;execution_time&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;cumulative_time_at_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">burn_time</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;beta_eff_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span>
-        <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span><span class="p">[</span>
-            <span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span>
-
-        <span class="c1"># Inject the Record value into the table</span>
-        <span class="n">step_info</span><span class="o">.</span><span class="n">append</span><span class="p">()</span>
-        <span class="n">step_info_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.store_run_init_info"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">[docs]</a>    <span class="k">def</span> <span class="nf">store_run_init_info</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds the following depletion code and SaltProc simulation parameters</span>
-<span class="sd">        to the database:</span>
-<span class="sd">        neutron population, active cycles, inactive cycles, depletion code</span>
-<span class="sd">        version simulation title, depetion code input file path, depletion code</span>
-<span class="sd">        working directory, cross section data path, # of OMP threads, # of MPI</span>
-<span class="sd">        tasks, memory optimization mode (Serpent), depletion timestep size.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="c1"># numpy arraw row storage for run info</span>
-        <span class="c1"># delete and make this datatype specific</span>
-        <span class="c1"># to Depcode subclasses</span>
-        <span class="n">sim_info_dtype</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dtype</span><span class="p">([</span>
-            <span class="p">(</span><span class="s1">&#39;neutron_population&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">,</span> <span class="s1">&#39;S20&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">,</span> <span class="s1">&#39;S20&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;title&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">,</span> <span class="s1">&#39;S90&#39;</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">,</span> <span class="nb">int</span><span class="p">),</span>
-            <span class="p">(</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span>
-        <span class="p">])</span>
-        <span class="c1"># Read info from depcode _res.m File</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_info</span><span class="p">()</span>
-        <span class="c1"># Store information about material properties in new array row</span>
-        <span class="n">sim_info_row</span> <span class="o">=</span> <span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">,</span>  <span class="c1"># delete the below</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">],</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span>
-        <span class="p">)</span>
-        <span class="n">sim_info_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">sim_info_row</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">sim_info_dtype</span><span class="p">)</span>
-
-        <span class="c1"># Open or restore db and append datat to it</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span>
-            <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">,</span>
-            <span class="n">filters</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">sim_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_node</span><span class="p">(</span><span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span> <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">)</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="n">sim_info_table</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">create_table</span><span class="p">(</span>
-                <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="p">,</span>
-                <span class="s1">&#39;initial_depcode_siminfo&#39;</span><span class="p">,</span>
-                <span class="n">sim_info_array</span><span class="p">,</span>
-                <span class="s2">&quot;Initial depletion code simulation parameters&quot;</span><span class="p">)</span>
-        <span class="n">sim_info_table</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Simulation.read_k_eds_delta"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">[docs]</a>    <span class="k">def</span> <span class="nf">read_k_eds_delta</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_timestep</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reads from database delta between previous and current `keff` at the</span>
-<span class="sd">        end of depletion step and returns `True` if predicted `keff` at the</span>
-<span class="sd">        next depletion step drops below 1.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        current_timestep : int</span>
-<span class="sd">            Number of current depletion time step.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            Is the reactor will become subcritical at the next step?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">current_timestep</span> <span class="o">&gt;</span> <span class="mi">3</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">restart_flag</span><span class="p">:</span>
-            <span class="c1"># Open or restore db and read data</span>
-            <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">sim_param</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">simulation_parameters</span>
-            <span class="n">k_eds</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">x</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">sim_param</span><span class="o">.</span><span class="n">iterrows</span><span class="p">()])</span>
-            <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-            <span class="n">delta_keff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">k_eds</span><span class="p">)</span>
-            <span class="n">avrg_keff_drop</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">delta_keff</span><span class="p">[</span><span class="o">-</span><span class="mi">4</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Average keff drop per step &quot;</span><span class="p">,</span> <span class="n">avrg_keff_drop</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;keff at the end of last step &quot;</span><span class="p">,</span> <span class="n">k_eds</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">k_eds</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">avrg_keff_drop</span> <span class="o">&lt;</span> <span class="mf">1.0</span><span class="p">:</span>
-                <span class="k">return</span> <span class="kc">True</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="kc">False</span></div>
-
-<div class="viewcode-block" id="Simulation.check_switch_geo_trigger"><a class="viewcode-back" href="../../src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">[docs]</a>    <span class="k">def</span> <span class="nf">check_switch_geo_trigger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">current_time</span><span class="p">,</span> <span class="n">switch_time</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Compares the current timestep with the user defined times</span>
-<span class="sd">        at which to switch reactor geometry, and returns `True` if there</span>
-<span class="sd">        is a match.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        current_timestep : int</span>
-<span class="sd">            Current time after depletion started.</span>
-<span class="sd">        switch_time : list</span>
-<span class="sd">            List containing moments in time when geometry have to be switched.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        bool</span>
-<span class="sd">            is the next geometry must be used at the next step?</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">current_time</span> <span class="ow">in</span> <span class="n">switch_time</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">True</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">False</span></div></div>
-</pre></div>
-
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-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
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diff --git a/v0.4.0/_modules/saltproc/sparger.html b/v0.4.0/_modules/saltproc/sparger.html
deleted file mode 100644
index 7c6d36bf3..000000000
--- a/v0.4.0/_modules/saltproc/sparger.html
+++ /dev/null
@@ -1,373 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>saltproc.sparger &mdash; Saltproc 0.4.0 documentation</title>
-      <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.sparger</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-
-
-<div class="viewcode-block" id="Sparger"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger">[docs]</a><span class="k">class</span> <span class="nc">Sparger</span><span class="p">(</span><span class="n">Process</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Class evaluates gas removal efficiency in sparger (bubble generator).</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    h_const : dict of str to float</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of target isotope.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            Henry&#39;s law constant.</span>
-<span class="sd">    gas_const : real</span>
-<span class="sd">        universal gas constant (Pa.m^3/mol-K)</span>
-<span class="sd">    diffusivity : real</span>
-<span class="sd">        liquid phase diffusivity (cm^2/s)</span>
-<span class="sd">    temp_room: real</span>
-<span class="sd">        room temperature (Kelvin)</span>
-<span class="sd">    exp_const: dict of str to float</span>
-
-<span class="sd">        ``key``</span>
-<span class="sd">            Name of target isotope.</span>
-<span class="sd">        ``value``</span>
-<span class="sd">            exponential constant from following reference</span>
-<span class="sd">    q_salt : float</span>
-<span class="sd">        volumetric salt flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    q_he : float</span>
-<span class="sd">        volumetric helium flow rate (m^3/s)</span>
-<span class="sd">        Default: 0.005</span>
-<span class="sd">    length : float</span>
-<span class="sd">        sparger/contractor length (m)</span>
-<span class="sd">        Default: 10</span>
-<span class="sd">    dp : float</span>
-<span class="sd">        sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">        Default: 0.1</span>
-<span class="sd">    db : float</span>
-<span class="sd">        bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">        Default: 0.001</span>
-<span class="sd">    temp_salt: float</span>
-<span class="sd">        salt temperature (K)</span>
-<span class="sd">        Default: 900</span>
-<span class="sd">    area : float</span>
-<span class="sd">        contactor cross-section (m^2)</span>
-
-<span class="sd">    Methods</span>
-<span class="sd">    -------</span>
-<span class="sd">    eps(h_const, kl_const)</span>
-<span class="sd">        Defines gas removal efficiency for sparger (bubble generator)</span>
-<span class="sd">        using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</span>
-<span class="sd">    eff()</span>
-<span class="sd">        Evaluates gas removal efficiencies for target isotopes.</span>
-<span class="sd">    sherwood()</span>
-<span class="sd">        Contains Sherwood number correlations from different sources.</span>
-<span class="sd">    description()</span>
-<span class="sd">        Contains a dictionary of plot properties.</span>
-<span class="sd">    calc_rem_efficiency(el_name)</span>
-<span class="sd">        Overrides exiting method in Parent class.</span>
-
-<span class="sd">    References</span>
-<span class="sd">    ----------</span>
-<span class="sd">    [1] Henry&#39;s law constants (Pa.m3/mol) for Xe, Kr, H from</span>
-<span class="sd">    Sander, R.: Compilation of Henry&#39;s law constants (version 4.0)</span>
-<span class="sd">    for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,</span>
-<span class="sd">    https://doi.org/10.5194/acp-15-4399-2015, 2015.</span>
-<span class="sd">    [2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating</span>
-<span class="sd">    Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge</span>
-<span class="sd">    National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.</span>
-<span class="sd">    [3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD</span>
-<span class="sd">    Sensitivity Analysis. In preparation</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">diffusivity</span> <span class="o">=</span> <span class="mf">2.5E-9</span>
-    <span class="n">gas_const</span> <span class="o">=</span> <span class="mf">8.314</span>
-    <span class="n">h_const</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mf">4.3e-5</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="mf">2.5e-5</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="mf">2.6e-6</span><span class="p">}</span>
-    <span class="n">temp_room</span> <span class="o">=</span> <span class="mf">298.15</span>
-    <span class="n">exp_const</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mi">2300</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="mi">1900</span><span class="p">,</span> <span class="s1">&#39;H&#39;</span><span class="p">:</span> <span class="mi">0</span><span class="p">}</span>
-
-<div class="viewcode-block" id="Sparger.__init__"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">q_salt</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">q_he</span><span class="o">=</span><span class="mf">0.005</span><span class="p">,</span> <span class="n">length</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                 <span class="n">dp</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">db</span><span class="o">=</span><span class="mf">0.001</span><span class="p">,</span> <span class="n">temp_salt</span><span class="o">=</span><span class="mi">900</span><span class="p">,</span> <span class="n">corr</span><span class="o">=</span><span class="s1">&#39;Jiaqi&#39;</span><span class="p">,</span>
-                 <span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initializes the Sparger object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        q_salt : float</span>
-<span class="sd">            volumetric salt flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        q_he : float</span>
-<span class="sd">            volumetric helium flow rate (m^3/s)</span>
-<span class="sd">            Default: 0.005</span>
-<span class="sd">        length : float</span>
-<span class="sd">            sparger/contractor length (m)</span>
-<span class="sd">            Default: 10</span>
-<span class="sd">        dp : float</span>
-<span class="sd">            sparger/contractor (pipe) diameter (m)</span>
-<span class="sd">            Default: 0.1</span>
-<span class="sd">        db : float</span>
-<span class="sd">            bubble diameter (m) for bubble generator/separator</span>
-<span class="sd">            Default: 0.001</span>
-<span class="sd">        temp_salt: float</span>
-<span class="sd">            salt temperature (K)</span>
-<span class="sd">            Default: 900</span>
-<span class="sd">        area : float</span>
-<span class="sd">            contactor cross-section (m^2)</span>
-<span class="sd">        corr: string</span>
-<span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi&#39;s</span>
-<span class="sd">             (1) milestone report from Jiaqi [3]</span>
-<span class="sd">             (2) ORNL-TM-2245 Eq.36 [2]</span>
-<span class="sd">             default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
-
-<span class="sd">        Notes</span>
-<span class="sd">        -----</span>
-<span class="sd">        Default values comes from Jiaqi&#39;s simulation</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="o">*</span><span class="n">initial_data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">=</span> <span class="n">q_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">=</span> <span class="n">q_he</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">length</span> <span class="o">=</span> <span class="n">length</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">=</span> <span class="n">dp</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">db</span> <span class="o">=</span> <span class="n">db</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">=</span> <span class="n">temp_salt</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">pi</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">corr</span> <span class="o">=</span> <span class="n">corr</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">efficiency</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()</span></div>
-
-<div class="viewcode-block" id="Sparger.calc_rem_efficiency"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency">[docs]</a>    <span class="k">def</span> <span class="nf">calc_rem_efficiency</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">el_name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Overrides the existing method in Process class to provide</span>
-<span class="sd">        efficiency values of target isotopes calculated in eff() function.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        el_name : str</span>
-<span class="sd">            Name of target element to be removed.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            Extraction efficiency for el_name element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">isotope</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">eff</span><span class="p">()[</span><span class="n">el_name</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">isotope</span></div>
-
-<div class="viewcode-block" id="Sparger.description"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[docs]</a>    <span class="k">def</span> <span class="nf">description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Class attributes&#39; descriptions for plotting purpose in sensitivity</span>
-<span class="sd">        analysis</span>
-<span class="sd">        Return</span>
-<span class="sd">        ------</span>
-<span class="sd">        pltdict: dict of str to str</span>
-<span class="sd">            contains instances&#39; information</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">plt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;q_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;salt flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;q_he&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;helium flow rate ${(m^3/s)}$&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                             <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;length&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;sparger pipe length ${(m)}$&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                               <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;dp&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;sparger pipe diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;db&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;bubble diameter ${(m)}$&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                           <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">},</span>
-                    <span class="s1">&#39;temp_salt&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;xaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;average salt temperature ${(K)}$&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;yaxis&#39;</span><span class="p">:</span> <span class="s1">&#39;removal efficiency (%)&#39;</span><span class="p">,</span>
-                                  <span class="s1">&#39;vs&#39;</span><span class="p">:</span> <span class="s1">&#39;Xe_eff&#39;</span><span class="p">}</span>
-                    <span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">plt_dict</span></div>
-
-<div class="viewcode-block" id="Sparger.eps"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[docs]</a>    <span class="k">def</span> <span class="nf">eps</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h_const</span><span class="p">,</span> <span class="n">kl_const</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiency using Eq. 4</span>
-<span class="sd">        from Peebles report (ORNL-TM-2245).</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        efficiency : float</span>
-<span class="sd">            removal efficiency of a specific chemical element.</span>
-
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">6</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">db</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_he</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span><span class="p">))</span>
-        <span class="n">alpha</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">gas_const</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="n">h_const</span><span class="p">)</span> <span class="o">*</span>\
-                <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_he</span><span class="p">)</span>
-        <span class="n">beta</span> <span class="o">=</span> <span class="p">(</span><span class="n">kl_const</span> <span class="o">*</span> <span class="n">a</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span> <span class="o">*</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">length</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">alpha</span><span class="p">))</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span>
-
-        <span class="k">return</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">beta</span><span class="p">))</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="n">alpha</span><span class="p">)</span></div>
-
-<div class="viewcode-block" id="Sparger.sherwood"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[docs]</a>    <span class="k">def</span> <span class="nf">sherwood</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Contains Sherwood number correlations.</span>
-<span class="sd">             Sherwood correlations: ORNL-TM-2245 or Jaiqi</span>
-<span class="sd">             (1) Jaiqi Ph.D. dissertation</span>
-<span class="sd">             (2) ORNL-TM-2245 Eq.36</span>
-<span class="sd">             default: Sherwood correlation from ORNL-TM-2245 Eq.36</span>
-<span class="sd">         &quot;&quot;&quot;</span>
-        <span class="n">sh_corr</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s1">&#39;ORNL-TM-2245&#39;</span><span class="p">:</span> <span class="s1">&#39;0.0096 * (number_re**0.913) * (number_sc**0.346)&#39;</span><span class="p">,</span>
-            <span class="s1">&#39;Jiaqi&#39;</span><span class="p">:</span> <span class="s1">&#39;2.06972 * (number_re ** 0.555) * (number_sc ** 0.5)&#39;</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">sh_corr</span></div>
-
-<div class="viewcode-block" id="Sparger.eff"><a class="viewcode-back" href="../../src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[docs]</a>    <span class="k">def</span> <span class="nf">eff</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Evaluates gas removal efficiencies for target isotopes.</span>
-<span class="sd">        In this function, vl, mu, rho, number_sh, number_sc, number_re and kl</span>
-<span class="sd">        are average liquid velocity (m/s), kinematic viscosity (Pa.s),</span>
-<span class="sd">        density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,</span>
-<span class="sd">        schmidt number, reynold number and liquid phase mass transfer</span>
-<span class="sd">        coefficient (m/s), respectively.</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        rem_eff : dict of str to float</span>
-<span class="sd">            Dictionary containing removal efficiency of each target isotope.</span>
-
-<span class="sd">            ``key``</span>
-<span class="sd">                Name of target isotope.</span>
-<span class="sd">            ``value``</span>
-<span class="sd">                removal efficiency.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">hh</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">:</span>
-            <span class="n">hh</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span>
-                           <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">exp_const</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">-</span>
-                                                         <span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_room</span><span class="p">)))</span>
-
-        <span class="n">mu</span> <span class="o">=</span> <span class="mf">1.076111581e-2</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span> <span class="o">/</span> <span class="mi">1000</span><span class="p">)</span><span class="o">**</span><span class="p">(</span><span class="o">-</span><span class="mf">4.833549134</span><span class="p">)</span>
-        <span class="n">rho</span> <span class="o">=</span> <span class="p">(</span><span class="mf">6.105</span> <span class="o">-</span> <span class="mf">0.001272</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">temp_salt</span><span class="p">)</span> <span class="o">*</span> <span class="mi">1000</span>
-        <span class="n">nu</span> <span class="o">=</span> <span class="n">mu</span> <span class="o">/</span> <span class="n">rho</span>
-        <span class="n">vl</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">q_salt</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">area</span>
-        <span class="n">number_re</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span> <span class="o">*</span> <span class="n">vl</span> <span class="o">/</span> <span class="n">nu</span>
-        <span class="n">number_sc</span> <span class="o">=</span> <span class="n">nu</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">diffusivity</span>
-        <span class="n">number_sh</span> <span class="o">=</span> <span class="nb">eval</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">sherwood</span><span class="p">()[</span><span class="bp">self</span><span class="o">.</span><span class="n">corr</span><span class="p">],</span>
-                         <span class="p">{</span><span class="s1">&#39;number_sc&#39;</span><span class="p">:</span> <span class="n">number_sc</span><span class="p">,</span> <span class="s1">&#39;number_re&#39;</span><span class="p">:</span> <span class="n">number_re</span><span class="p">})</span>
-        <span class="n">kl</span> <span class="o">=</span> <span class="n">number_sh</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">diffusivity</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">dp</span>
-        <span class="n">rem_eff</span> <span class="o">=</span> <span class="p">{</span><span class="n">key</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">eps</span><span class="p">(</span><span class="n">hh</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">kl</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">h_const</span><span class="p">}</span>
-
-        <span class="k">return</span> <span class="n">rem_eff</span></div></div>
-
-
-<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s1">&#39;__main__&#39;</span><span class="p">:</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">Sparger</span><span class="p">()</span><span class="o">.</span><span class="n">eff</span><span class="p">())</span>
-</pre></div>
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deleted file mode 100644
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-  <h1>Source code for saltproc.tests.test_app</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">app</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-<span class="n">main_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.json&#39;</span>
-<span class="n">dot_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.dot&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span><span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;sss2&#39;</span><span class="p">,</span>
-                         <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-                         <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-                         <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-                         <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_read_main_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_main_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;codename&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;serpent&quot;</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;npop&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">50</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;active_cycles&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">20</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;inactive_cycles&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">20</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;db_name&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="n">directory</span> <span class="o">+</span> \
-        <span class="s1">&#39;/./data/db_saltproc.h5&#39;</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">depcode_inp</span><span class="p">[</span><span class="s1">&#39;geo_file_paths&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/./347_base.ini&#39;</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">app</span><span class="o">.</span><span class="n">simulation_inp</span><span class="p">[</span><span class="s1">&#39;restart_flag&#39;</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_equal</span><span class="p">(</span>
-        <span class="n">app</span><span class="o">.</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;power_levels&#39;</span><span class="p">],</span> <span class="p">[</span>
-            <span class="mf">1.250E+9</span><span class="p">,</span> <span class="mf">1.250E+9</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_equal</span><span class="p">(</span><span class="n">app</span><span class="o">.</span><span class="n">reactor_inp</span><span class="p">[</span><span class="s1">&#39;dep_step_length_cumulative&#39;</span><span class="p">],</span>
-                            <span class="p">[</span><span class="mi">5</span><span class="p">,</span> <span class="mi">10</span><span class="p">])</span></div>
-
-
-<div class="viewcode-block" id="test_read_processes_from_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_processes_from_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="n">procs</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_processes_from_input</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;heat_exchanger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">1.37E+7</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;H&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Kr&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;sparger&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Xe&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.6</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;H&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.15</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;entrainment_separator&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Kr&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.87</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">volume</span> <span class="o">==</span> <span class="mf">11.0</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Tb&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span>
-    <span class="k">assert</span> <span class="n">procs</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;removal_tb_dy&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">efficiency</span><span class="p">[</span><span class="s1">&#39;Dy&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span></div>
-
-
-<div class="viewcode-block" id="test_read_feeds_from_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input">[docs]</a><span class="k">def</span> <span class="nf">test_read_feeds_from_input</span><span class="p">():</span>
-    <span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-    <span class="n">feeds</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_feeds_from_input</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">4.9602E+8</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="mf">4.9602</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15426147.398592</span>
-    <span class="k">assert</span> <span class="n">feeds</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;leu&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">293096800.37484</span></div>
-
-
-<div class="viewcode-block" id="test_read_dot"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot">[docs]</a><span class="k">def</span> <span class="nf">test_read_dot</span><span class="p">():</span>
-    <span class="n">burnable_mat</span><span class="p">,</span> <span class="n">paths</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">read_dot</span><span class="p">(</span><span class="n">dot_input</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">burnable_mat</span> <span class="o">==</span> <span class="s1">&#39;fuel&#39;</span>
-    <span class="k">assert</span> <span class="n">paths</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;sparger&#39;</span>
-    <span class="k">assert</span> <span class="n">paths</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;heat_exchanger&#39;</span>
-    <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">paths</span><span class="p">)</span> <span class="o">==</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">7</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_reprocessing"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing">[docs]</a><span class="k">def</span> <span class="nf">test_reprocessing</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">rem_mass</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1401.0846504569054</span>
-    <span class="k">assert</span> <span class="n">rem_mass</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">][</span><span class="s1">&#39;Xe135&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">11.878661583083327</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">][</span><span class="s1">&#39;I135&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.90990472940444</span>
-    <span class="k">assert</span> <span class="n">waste_st</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">][</span><span class="s1">&#39;Sr90&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.7486923392931839</span></div>
-
-
-<div class="viewcode-block" id="test_refill"><a class="viewcode-back" href="../../../src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill">[docs]</a><span class="k">def</span> <span class="nf">test_refill</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-    <span class="n">m_after_refill</span> <span class="o">=</span> <span class="n">app</span><span class="o">.</span><span class="n">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">43.573521906078334</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">827.8969156550545</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">461.8575149906222</span>
-    <span class="k">assert</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">67.75331008246572</span></div>
-</pre></div>
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diff --git a/v0.4.0/_modules/saltproc/tests/test_depcode.html b/v0.4.0/_modules/saltproc/tests/test_depcode.html
deleted file mode 100644
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-      <li class="breadcrumb-item active">saltproc.tests.test_depcode</li>
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-             
-  <h1>Source code for saltproc.tests.test_depcode</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Reactor</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/test&#39;</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="p">[</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
-            <span class="n">directory</span><span class="p">,</span>
-            <span class="s1">&#39;../test_geo.inp&#39;</span><span class="p">)])</span>
-
-<span class="n">msr</span> <span class="o">=</span> <span class="n">Reactor</span><span class="p">(</span><span class="n">volume</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
-              <span class="n">power_levels</span><span class="o">=</span><span class="p">[</span><span class="mf">1.250E+09</span><span class="p">,</span> <span class="mf">1.250E+09</span><span class="p">,</span> <span class="mf">5.550E+09</span><span class="p">],</span>
-              <span class="n">dep_step_length_cumulative</span><span class="o">=</span><span class="p">[</span><span class="mf">111.111</span><span class="p">,</span> <span class="mf">2101.9</span><span class="p">,</span> <span class="mf">3987.5</span><span class="p">])</span>
-
-<span class="n">geo_test_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test_geometry_switch.inp&#39;</span>
-
-
-<div class="viewcode-block" id="test_create_nuclide_name_map_zam_to_serpent"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_nuclide_name_map_zam_to_serpent">[docs]</a><span class="k">def</span> <span class="nf">test_create_nuclide_name_map_zam_to_serpent</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">create_nuclide_name_map_zam_to_serpent</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">380880</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;38088.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">962400</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;96240.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">952421</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;95342.09c&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">340831</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;340831&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">300732</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;300732&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">511262</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;511262&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">420931</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;420931&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iso_map</span><span class="p">[</span><span class="mi">410911</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;410911&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_convert_nuclide_name_serpent_to_zam"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_convert_nuclide_name_serpent_to_zam">[docs]</a><span class="k">def</span> <span class="nf">test_convert_nuclide_name_serpent_to_zam</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">47310</span><span class="p">)</span> <span class="o">==</span> <span class="mi">471101</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">95342</span><span class="p">)</span> <span class="o">==</span> <span class="mi">952421</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">61348</span><span class="p">)</span> <span class="o">==</span> <span class="mi">611481</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">52327</span><span class="p">)</span> <span class="o">==</span> <span class="mi">521271</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">1001</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1001</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">1002</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1002</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">convert_nuclide_name_serpent_to_zam</span><span class="p">(</span><span class="mi">48315</span><span class="p">)</span> <span class="o">==</span> <span class="mi">481151</span></div>
-
-
-<div class="viewcode-block" id="test_read_plaintext_file"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_plaintext_file">[docs]</a><span class="k">def</span> <span class="nf">test_read_plaintext_file</span><span class="p">():</span>
-    <span class="n">template_str</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;%therm zrh_h 900 hzr05.32t hzr06.32t</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">18</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop 30 20 10</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">22</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set bumode  2</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">template_str</span><span class="p">[</span><span class="mi">23</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pcc     1</span><span class="se">\n</span><span class="s1">&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_change_sim_par"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par">[docs]</a><span class="k">def</span> <span class="nf">test_change_sim_par</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">npop</span> <span class="o">=</span> <span class="mi">1111</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">active_cycles</span> <span class="o">=</span> <span class="mi">101</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">inactive_cycles</span> <span class="o">=</span> <span class="mi">33</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">change_sim_par</span><span class="p">(</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-    <span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span><span class="p">[</span><span class="mi">18</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="s1"> </span><span class="si">%i</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">npop</span><span class="p">,</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">active_cycles</span><span class="p">,</span>
-        <span class="n">serpent</span><span class="o">.</span><span class="n">inactive_cycles</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_get_nuc_name"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name">[docs]</a><span class="k">def</span> <span class="nf">test_get_nuc_name</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;92235.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;U235&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;38088.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Sr88&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;95342.09c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Am242m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;61348.03c&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Pm148m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;20060&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;He6&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;110241&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Na24m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;170381&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Cl38m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;310741&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Ga74m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;290702&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Cu70m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;250621&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Mn62m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;300732&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Zn73m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;370981&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Rb98m1&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;390972&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Y97m2&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">get_nuc_name</span><span class="p">(</span><span class="s1">&#39;491142&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;In114m2&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_read_depcode_info"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info">[docs]</a><span class="k">def</span> <span class="nf">test_read_depcode_info</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_info</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Serpent&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;2.1.31&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Untitled&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span> <span class="o">==</span> \
-        <span class="s1">&#39;/home/andrei2/Desktop/git/saltproc/develop/saltproc/data/saltproc_tap&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span> <span class="o">==</span> \
-        <span class="s1">&#39;/home/andrei2/Desktop/git/saltproc/develop/saltproc&#39;</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span> <span class="o">==</span> \
-        <span class="s1">&#39;/home/andrei2/serpent/xsdata/jeff312/sss_jeff312.xsdata&#39;</span>
-
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mi">4</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">sim_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">3.0</span></div>
-
-
-<div class="viewcode-block" id="test_read_depcode_step_param"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param">[docs]</a><span class="k">def</span> <span class="nf">test_read_depcode_step_param</span><span class="p">():</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">read_depcode_step_param</span><span class="p">()</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">10552.84</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">81.933</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1.00651e+00</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1.00569e+00</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mi">70081</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="p">[</span><span class="mf">70077.1</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">serpent</span><span class="o">.</span><span class="n">param</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5.20000e-04</span></div>
-
-
-<div class="viewcode-block" id="test_read_dep_comp"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp">[docs]</a><span class="k">def</span> <span class="nf">test_read_dep_comp</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5449107.821098938</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">8.787897203694538e-22</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1231.3628804629795</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5812.83289505528</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15350.701473655872</span></div>
-
-
-<div class="viewcode-block" id="test_write_mat_file"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file">[docs]</a><span class="k">def</span> <span class="nf">test_write_mat_file</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">iter_matfile_old</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;.mat&#39;</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">write_mat_file</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="mf">12.0</span><span class="p">)</span>
-    <span class="n">mat_str</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;% Material compositions (after 12.000000 days)</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">if</span> <span class="s1">&#39;fuel&#39;</span> <span class="ow">in</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]:</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;2.27175E+07&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;-4.960200000E+00&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">1663</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11635E+04&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">1664</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;            1001.09c  -1.21000137902945E-35</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">elif</span> <span class="s1">&#39;ctrlPois&#39;</span> <span class="ow">in</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]:</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11635E+04&#39;</span>
-        <span class="k">assert</span> <span class="n">mat_str</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;            1001.09c  -1.21000137902945E-35</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">=</span> <span class="n">iter_matfile_old</span></div>
-
-
-<div class="viewcode-block" id="test_insert_path_to_geometry"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry">[docs]</a><span class="k">def</span> <span class="nf">test_insert_path_to_geometry</span><span class="p">():</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-    <span class="n">d_new</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">insert_path_to_geometry</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;test_geo.inp&quot;</span><span class="se">\n</span><span class="s1">&#39;</span></div>
-
-
-<div class="viewcode-block" id="test_replace_burnup_parameters"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters">[docs]</a><span class="k">def</span> <span class="nf">test_replace_burnup_parameters</span><span class="p">():</span>
-    <span class="n">time</span> <span class="o">=</span> <span class="n">msr</span><span class="o">.</span><span class="n">dep_step_length_cumulative</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
-    <span class="n">time</span><span class="o">.</span><span class="n">insert</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">)</span>
-    <span class="n">depsteps</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">time</span><span class="p">)</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">msr</span><span class="o">.</span><span class="n">power_levels</span><span class="p">)):</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">replace_burnup_parameters</span><span class="p">(</span><span class="n">d</span><span class="p">,</span>
-                                              <span class="n">msr</span><span class="p">,</span>
-                                              <span class="n">idx</span><span class="p">)</span>
-        <span class="n">out_file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">),</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span>
-        <span class="n">out_file</span><span class="o">.</span><span class="n">writelines</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-        <span class="n">out_file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">d_new</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span>
-            <span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;daystep&#39;</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="nb">str</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%5.9E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">msr</span><span class="o">.</span><span class="n">power_levels</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="k">assert</span> <span class="n">d_new</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="nb">str</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">%7.5E</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="n">depsteps</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span></div>
-
-
-<div class="viewcode-block" id="test_create_iter_matfile"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile">[docs]</a><span class="k">def</span> <span class="nf">test_create_iter_matfile</span><span class="p">():</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">template_inputfile_path</span><span class="p">)</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">create_iter_matfile</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">out</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\&quot;</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span></div>
-
-
-<div class="viewcode-block" id="test_write_depcode_input"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input">[docs]</a><span class="k">def</span> <span class="nf">test_write_depcode_input</span><span class="p">():</span>
-    <span class="n">iter_inputfile_old</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;_write_test&#39;</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">write_depcode_input</span><span class="p">(</span><span class="n">msr</span><span class="p">,</span>
-                                <span class="mi">0</span><span class="p">,</span>
-                                <span class="kc">False</span><span class="p">)</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;tests&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;material&quot;</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.250000000E+09&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;daystep&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;1.11111E+02&#39;</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">20</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;set pop 1111 101 33</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_matfile</span><span class="p">)</span>
-
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">iter_inputfile_old</span></div>
-
-
-<div class="viewcode-block" id="test_switch_to_next_geometry"><a class="viewcode-back" href="../../../src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_switch_to_next_geometry">[docs]</a><span class="k">def</span> <span class="nf">test_switch_to_next_geometry</span><span class="p">():</span>
-    <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">geo_test_input</span><span class="p">,</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;_test&#39;</span><span class="p">)</span>
-    <span class="n">iter_inputfile_old</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;_test&#39;</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">geo_files</span> <span class="o">+=</span> <span class="p">[</span><span class="s1">&#39;../../examples/406.inp&#39;</span><span class="p">,</span> <span class="s1">&#39;../../examples/988.inp&#39;</span><span class="p">]</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">switch_to_next_geometry</span><span class="p">()</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_plaintext_file</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">d</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;988.inp&quot;</span><span class="se">\n</span><span class="s1">&#39;</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span><span class="p">)</span>
-    <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">iter_inputfile_old</span></div>
-</pre></div>
-
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-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
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diff --git a/v0.4.0/_modules/saltproc/tests/test_materialflow.html b/v0.4.0/_modules/saltproc/tests/test_materialflow.html
deleted file mode 100644
index 589ed9184..000000000
--- a/v0.4.0/_modules/saltproc/tests/test_materialflow.html
+++ /dev/null
@@ -1,174 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
-<head>
-  <meta charset="utf-8" />
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-      <li class="breadcrumb-item active">saltproc.tests.test_materialflow</li>
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-             
-  <h1>Source code for saltproc.tests.test_materialflow</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_get_mass"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass">[docs]</a><span class="k">def</span> <span class="nf">test_get_mass</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span> <span class="o">==</span> <span class="mf">112683343.50000001</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5449107.821098938</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">8.787897203694538e-22</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">][</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">1231.3628804629795</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">get_mass</span><span class="p">()</span> <span class="o">==</span> <span class="mf">65563.2355</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">5812.83289505528</span>
-    <span class="k">assert</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">][</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="mf">15350.701473655872</span></div>
-
-
-<div class="viewcode-block" id="test_scale_matflow"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow">[docs]</a><span class="k">def</span> <span class="nf">test_scale_matflow</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">scale_factor</span> <span class="o">=</span> <span class="mf">0.7</span>
-    <span class="n">scaled_matflow</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">scale_matflow</span><span class="p">(</span><span class="n">scale_factor</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">922350000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">3499538.3359278883</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">922380000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">66580417.24509208</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">90190000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">37145139.35897285</span>
-    <span class="k">assert</span> <span class="n">scaled_matflow</span><span class="p">[</span><span class="mi">30070000</span><span class="p">]</span> <span class="o">==</span> <span class="n">scale_factor</span> <span class="o">*</span> <span class="mf">5449107.821098938</span></div>
-
-
-<div class="viewcode-block" id="test_copy_pymat_attrs"><a class="viewcode-back" href="../../../src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs">[docs]</a><span class="k">def</span> <span class="nf">test_copy_pymat_attrs</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">target_mat</span> <span class="o">=</span> <span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span>
-    <span class="n">target_mat</span><span class="o">.</span><span class="n">copy_pymat_attrs</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">])</span>
-    <span class="k">assert</span> <span class="n">target_mat</span><span class="o">.</span><span class="n">density</span> <span class="o">==</span> <span class="mf">5.873</span>
-    <span class="k">assert</span> <span class="n">target_mat</span><span class="o">.</span><span class="n">atoms_per_molecule</span> <span class="o">==</span> <span class="o">-</span><span class="mf">1.0</span></div>
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-             
-  <h1>Source code for saltproc.tests.test_process</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Process</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Process</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                  <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                  <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                  <span class="n">efficiency</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;Xe&#39;</span><span class="p">:</span> <span class="mf">1.0</span><span class="p">,</span> <span class="s1">&#39;Kr&#39;</span><span class="p">:</span> <span class="s1">&#39;9.5/mass_flowrate&#39;</span><span class="p">})</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">19.79776930513891</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">176.44741987005173</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">9.911913132605642e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.026158507248944377</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">6.420212330439721e-17</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">1.6462261463853208e-06</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.0002724894672886946</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">26.847312879174968</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">531.0633118374121</span></div>
-</pre></div>
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diff --git a/v0.4.0/_modules/saltproc/tests/test_separator.html b/v0.4.0/_modules/saltproc/tests/test_separator.html
deleted file mode 100644
index 92576ee2f..000000000
--- a/v0.4.0/_modules/saltproc/tests/test_separator.html
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-      <li class="breadcrumb-item active">saltproc.tests.test_separator</li>
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-  <h1>Source code for saltproc.tests.test_separator</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Separator</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Separator</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                    <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                    <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                    <span class="n">efficiency</span><span class="o">=</span><span class="s2">&quot;self&quot;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">19.5320018359295</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">174.0787699729534</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">9.778854502227908e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.025807352522232645</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">1.2668053364239955e-15</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">1.709607392097611e-06</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.0002829805665329617</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">27.88095952489617</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">527.0884551454453</span></div>
-</pre></div>
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-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
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diff --git a/v0.4.0/_modules/saltproc/tests/test_simulation.html b/v0.4.0/_modules/saltproc/tests/test_simulation.html
deleted file mode 100644
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-  <ul class="wy-breadcrumbs">
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-      <li class="breadcrumb-item active">saltproc.tests.test_simulation</li>
-      <li class="wy-breadcrumbs-aside">
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-           <div itemprop="articleBody">
-             
-  <h1>Source code for saltproc.tests.test_simulation</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Simulation</span>
-<span class="kn">import</span> <span class="nn">saltproc.app</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">tables</span> <span class="k">as</span> <span class="nn">tb</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-<span class="n">main_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.json&#39;</span>
-<span class="n">dot_input</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test.dot&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="p">[</span>
-        <span class="s1">&#39;../../examples/406.inp&#39;</span><span class="p">,</span>
-        <span class="s1">&#39;../../examples/988.inp&#39;</span><span class="p">])</span>
-
-<span class="n">simulation</span> <span class="o">=</span> <span class="n">Simulation</span><span class="p">(</span><span class="n">sim_name</span><span class="o">=</span><span class="s1">&#39;Simulation unit tests&#39;</span><span class="p">,</span>
-                        <span class="n">sim_depcode</span><span class="o">=</span><span class="n">serpent</span><span class="p">,</span>
-                        <span class="n">core_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">node_number</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
-                        <span class="n">db_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test_db.h5&#39;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_check_switch_geo_trigger"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_check_switch_geo_trigger">[docs]</a><span class="k">def</span> <span class="nf">test_check_switch_geo_trigger</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    This unit test checks that ``check_switch_geo_trigger`` functions</span>
-<span class="sd">    consistently with its docstring.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">switch_times</span> <span class="o">=</span> <span class="p">[</span><span class="mf">1.0</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="o">-</span><span class="mi">31</span><span class="p">,</span> <span class="mf">86.23333</span><span class="p">,</span> <span class="mf">1e-16</span><span class="p">,</span> <span class="mf">2e-18</span><span class="p">,</span> <span class="s2">&quot;two o clock&quot;</span><span class="p">]</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="o">-</span><span class="mi">32</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="mf">86.233</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="mf">1e-16</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="mf">5e-18</span><span class="p">,</span> <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="s2">&quot;three o clock&quot;</span><span class="p">,</span>
-                                               <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">check_switch_geo_trigger</span><span class="p">(</span><span class="s2">&quot;two o clock&quot;</span><span class="p">,</span>
-                                               <span class="n">switch_times</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span></div>
-
-
-<div class="viewcode-block" id="test_store_after_repr"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_after_repr">[docs]</a><span class="k">def</span> <span class="nf">test_store_after_repr</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    This unit test checks that select entries that ``store_after_repr_()`</span>
-<span class="sd">    stores in the database match the corresponding entries from the input</span>
-<span class="sd">    explicity in value and implicitly in type.</span>
-
-<span class="sd">    unchecked processes: waste_bypass</span>
-<span class="sd">                        waste_core_inlet</span>
-<span class="sd">                        waste_core_outlet</span>
-<span class="sd">                        waste_heat_exchanger</span>
-<span class="sd">                        removal_tb_dy</span>
-<span class="sd">                        feed_pure_gd</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">saltproc</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">read_main_input</span><span class="p">(</span><span class="n">main_input</span><span class="p">)</span>
-
-    <span class="c1"># read data</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span>
-        <span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste_st</span><span class="p">,</span> <span class="n">rem_mass</span> <span class="o">=</span> <span class="n">saltproc</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">reprocessing</span><span class="p">(</span><span class="n">mats</span><span class="p">)</span>
-    <span class="n">m_after_refill</span> <span class="o">=</span> <span class="n">saltproc</span><span class="o">.</span><span class="n">app</span><span class="o">.</span><span class="n">refill</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">rem_mass</span><span class="p">,</span> <span class="n">waste_st</span><span class="p">)</span>
-
-    <span class="n">fuel_st</span> <span class="o">=</span> <span class="n">m_after_refill</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span>
-
-    <span class="n">f_feed_leu</span> <span class="o">=</span> <span class="n">fuel_st</span><span class="p">[</span><span class="s1">&#39;feed_leu&#39;</span><span class="p">]</span>
-    <span class="n">f_entrain_sep</span> <span class="o">=</span> <span class="n">fuel_st</span><span class="p">[</span><span class="s1">&#39;waste_entrainment_separator&#39;</span><span class="p">]</span>
-    <span class="n">f_liq_met</span> <span class="o">=</span> <span class="n">fuel_st</span><span class="p">[</span><span class="s1">&#39;waste_liquid_metal&#39;</span><span class="p">]</span>
-    <span class="n">f_nickel_filt</span> <span class="o">=</span> <span class="n">fuel_st</span><span class="p">[</span><span class="s1">&#39;waste_nickel_filter&#39;</span><span class="p">]</span>
-    <span class="n">f_sparger</span> <span class="o">=</span> <span class="n">fuel_st</span><span class="p">[</span><span class="s1">&#39;waste_sparger&#39;</span><span class="p">]</span>
-
-    <span class="c1"># we want to keep the old path for other sims, but for this</span>
-    <span class="c1"># test we&#39;ll want a fresh db</span>
-    <span class="n">db_path_old</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span>
-    <span class="n">db_file</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;.h5&#39;</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_file</span>
-
-    <span class="c1"># store data</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_after_repr</span><span class="p">(</span><span class="n">mats</span><span class="p">,</span> <span class="n">m_after_refill</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-
-    <span class="c1"># read stored data</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span>
-                          <span class="n">filters</span><span class="o">=</span><span class="n">simulation</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Unable to assign correct value to db.</span><span class="se">\</span>
-<span class="s1">              See error stack for more info.&#39;</span><span class="p">)</span>
-
-    <span class="n">tmats</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span>
-    <span class="n">tfuel_st</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">fuel</span><span class="o">.</span><span class="n">in_out_streams</span>
-
-    <span class="n">tf_feed_leu</span> <span class="o">=</span> <span class="n">tfuel_st</span><span class="o">.</span><span class="n">feed_leu</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tf_entrain_sep</span> <span class="o">=</span> <span class="n">tfuel_st</span><span class="o">.</span><span class="n">waste_entrainment_separator</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tf_liq_met</span> <span class="o">=</span> <span class="n">tfuel_st</span><span class="o">.</span><span class="n">waste_liquid_metal</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tf_nickel_filt</span> <span class="o">=</span> <span class="n">tfuel_st</span><span class="o">.</span><span class="n">waste_nickel_filter</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tf_sparger</span> <span class="o">=</span> <span class="n">tfuel_st</span><span class="o">.</span><span class="n">waste_sparger</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="n">tf_feed_leu</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_feed_leu</span><span class="p">[</span><span class="s1">&#39;Li6&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_feed_leu</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_feed_leu</span><span class="p">[</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_feed_leu</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_feed_leu</span><span class="p">[</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_feed_leu</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_feed_leu</span><span class="p">[</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_feed_leu</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_feed_leu</span><span class="p">[</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span>
-
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;H1&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;H2&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">459</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;Kr91&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">461</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;Kr93&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">991</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;Xe135&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_entrain_sep</span><span class="p">[</span><span class="mi">993</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_entrain_sep</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">]</span>
-
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">117</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Ca49&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">288</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Cu69&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">513</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Sr102&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">518</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Y89&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">1123</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Pr159&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_liq_met</span><span class="p">[</span><span class="mi">1124</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_liq_met</span><span class="p">[</span><span class="s1">&#39;Nd142&#39;</span><span class="p">]</span>
-
-        <span class="k">assert</span> <span class="n">tf_nickel_filt</span><span class="p">[</span><span class="mi">309</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_nickel_filt</span><span class="p">[</span><span class="s1">&#39;Zn70&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_nickel_filt</span><span class="p">[</span><span class="mi">437</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_nickel_filt</span><span class="p">[</span><span class="s1">&#39;Br90&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_nickel_filt</span><span class="p">[</span><span class="mi">964</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_nickel_filt</span><span class="p">[</span><span class="s1">&#39;I134&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_nickel_filt</span><span class="p">[</span><span class="mi">630</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_nickel_filt</span><span class="p">[</span><span class="s1">&#39;Tc99&#39;</span><span class="p">]</span>
-
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;H1&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;H2&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">459</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;Kr91&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">461</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;Kr93&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">991</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;Xe135&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tf_sparger</span><span class="p">[</span><span class="mi">993</span><span class="p">]</span> <span class="o">==</span> <span class="n">f_sparger</span><span class="p">[</span><span class="s1">&#39;Xe136&#39;</span><span class="p">]</span>
-    <span class="k">except</span> <span class="ne">AssertionError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">AssertionError</span><span class="p">(</span><span class="s2">&quot;incorrect Value&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span><span class="s2">&quot;incorrect key&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">BaseException</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;something went wrong. See error stack for details&quot;</span><span class="p">)</span>
-
-    <span class="c1"># close the file</span>
-    <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="c1"># delete test file</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-
-    <span class="c1"># use original db path</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span></div>
-
-
-<div class="viewcode-block" id="test_store_mat_data"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_mat_data">[docs]</a><span class="k">def</span> <span class="nf">test_store_mat_data</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    This unit test checks that select entries that ``store_mat_data_()`</span>
-<span class="sd">    stores in the database match the corresponding entries from the input</span>
-<span class="sd">    explicity in value and implicitly in type.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="c1"># read data</span>
-    <span class="n">mats_before</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span>
-        <span class="kc">False</span><span class="p">)</span>
-    <span class="n">mats_after</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span>
-        <span class="kc">True</span><span class="p">)</span>
-
-    <span class="n">fuel_before</span> <span class="o">=</span> <span class="n">mats_before</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span>
-    <span class="n">pois_before</span> <span class="o">=</span> <span class="n">mats_before</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span>
-
-    <span class="n">fuel_after</span> <span class="o">=</span> <span class="n">mats_after</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">]</span>
-    <span class="n">pois_after</span> <span class="o">=</span> <span class="n">mats_after</span><span class="p">[</span><span class="s1">&#39;ctrlPois&#39;</span><span class="p">]</span>
-
-    <span class="c1"># we want to keep the old path for other sims, but for this</span>
-    <span class="c1"># test we&#39;ll want a fresh db</span>
-    <span class="n">db_path_old</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span>
-    <span class="n">db_file</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;.h5&#39;</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_file</span>
-
-    <span class="c1"># store data at end</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats_before</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_mat_data</span><span class="p">(</span><span class="n">mats_after</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span>
-
-    <span class="c1"># read stored data</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span>
-                          <span class="n">filters</span><span class="o">=</span><span class="n">simulation</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Unable to assign correct value to db.</span><span class="se">\</span>
-<span class="s1">              See error stack for more info.&#39;</span><span class="p">)</span>
-
-    <span class="n">tmats</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">materials</span>
-
-    <span class="n">tfuel_before</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">fuel</span><span class="o">.</span><span class="n">before_reproc</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tfuel_before_params</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">fuel</span><span class="o">.</span><span class="n">before_reproc</span><span class="o">.</span><span class="n">parameters</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="n">tfuel_after</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">fuel</span><span class="o">.</span><span class="n">after_reproc</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tfuel_after_params</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">fuel</span><span class="o">.</span><span class="n">after_reproc</span><span class="o">.</span><span class="n">parameters</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="n">tpois_before</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">ctrlPois</span><span class="o">.</span><span class="n">before_reproc</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tpois_before_params</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">ctrlPois</span><span class="o">.</span><span class="n">before_reproc</span><span class="o">.</span><span class="n">parameters</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="n">tpois_after</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">ctrlPois</span><span class="o">.</span><span class="n">after_reproc</span><span class="o">.</span><span class="n">comp</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">tpois_after_params</span> <span class="o">=</span> <span class="n">tmats</span><span class="o">.</span><span class="n">ctrlPois</span><span class="o">.</span><span class="n">after_reproc</span><span class="o">.</span><span class="n">parameters</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="c1"># Check the mass fractions</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">1566</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">1570</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">37</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">1610</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_before</span><span class="p">[</span><span class="mi">1589</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="p">[</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tpois_before</span><span class="p">[</span><span class="mi">1213</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="p">[</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tpois_before</span><span class="p">[</span><span class="mi">32</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="p">[</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span>
-
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">1566</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;U235&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">1570</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;U238&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">37</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;F19&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;Li7&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">1610</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;Cm240&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tfuel_after</span><span class="p">[</span><span class="mi">1589</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="p">[</span><span class="s1">&#39;Pu239&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tpois_after</span><span class="p">[</span><span class="mi">1213</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="p">[</span><span class="s1">&#39;Gd155&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tpois_after</span><span class="p">[</span><span class="mi">32</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="p">[</span><span class="s1">&#39;O16&#39;</span><span class="p">]</span>
-
-        <span class="c1"># Check the parameters</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">mass</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">density</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">temp</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">void_frac</span>
-        <span class="k">assert</span> <span class="n">tfuel_before_params</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_before</span><span class="o">.</span><span class="n">burnup</span>
-
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">mass</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">density</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">temp</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">void_frac</span>
-        <span class="k">assert</span> <span class="n">tpois_before_params</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_before</span><span class="o">.</span><span class="n">burnup</span>
-
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">mass</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">density</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">temp</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">void_frac</span>
-        <span class="k">assert</span> <span class="n">tfuel_after_params</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="n">fuel_after</span><span class="o">.</span><span class="n">burnup</span>
-
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">mass</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">density</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">vol</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">temp</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">mass_flowrate</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">void_frac</span>
-        <span class="k">assert</span> <span class="n">tpois_after_params</span><span class="p">[</span><span class="mi">6</span><span class="p">]</span> <span class="o">==</span> <span class="n">pois_after</span><span class="o">.</span><span class="n">burnup</span>
-    <span class="k">except</span> <span class="ne">AssertionError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">AssertionError</span><span class="p">(</span><span class="s2">&quot;incorrect Value&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span><span class="s2">&quot;incorrect key&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">BaseException</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;something went wrong. See error stack for details&quot;</span><span class="p">)</span>
-
-    <span class="c1"># close the file</span>
-    <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="c1"># delete test file</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-
-    <span class="c1"># use original db path</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span></div>
-
-
-<div class="viewcode-block" id="test_store_run_init_info"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_init_info">[docs]</a><span class="k">def</span> <span class="nf">test_store_run_init_info</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    This unit test checks that the entries ``store_run_init_info()`</span>
-<span class="sd">    stores in the database match the corresponding entries from the input</span>
-<span class="sd">    explicity in value and implicitly in type.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="c1"># read data</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_info</span><span class="p">()</span>
-    <span class="n">init_info</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">sim_info</span>
-
-    <span class="c1"># we want to keep the old path for other sims, but for this</span>
-    <span class="c1"># test we&#39;ll want a fresh db</span>
-    <span class="n">db_path_old</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span>
-    <span class="n">db_file</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;.h5&#39;</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_file</span>
-
-    <span class="c1"># store data at</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_init_info</span><span class="p">()</span>
-
-    <span class="c1"># read stored data</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span>
-                          <span class="n">filters</span><span class="o">=</span><span class="n">simulation</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Unable to assign correct value to db.</span><span class="se">\</span>
-<span class="s1">              See error stack for more info.&#39;</span><span class="p">)</span>
-
-    <span class="n">tinit_info</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">initial_depcode_siminfo</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-    <span class="k">try</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">npop</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">active_cycles</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">inactive_cycles</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">3</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;depcode_name&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">4</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;depcode_version&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">5</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;title&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">6</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;depcode_input_filename&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">7</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;depcode_working_dir&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">str</span><span class="p">(</span><span class="n">tinit_info</span><span class="p">[</span><span class="mi">8</span><span class="p">])[</span><span class="mi">2</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;xs_data_path&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">9</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;OMP_threads&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">10</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;MPI_tasks&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">11</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;memory_optimization_mode&#39;</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="n">tinit_info</span><span class="p">[</span><span class="mi">12</span><span class="p">]</span> <span class="o">==</span> <span class="n">init_info</span><span class="p">[</span><span class="s1">&#39;depletion_timestep&#39;</span><span class="p">]</span>
-    <span class="k">except</span> <span class="ne">AssertionError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">AssertionError</span><span class="p">(</span><span class="s2">&quot;incorrect Value&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span><span class="s2">&quot;incorrect key&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">BaseException</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;something went wrong. See error stack for details&quot;</span><span class="p">)</span>
-
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;&quot;</span><span class="p">)</span>
-
-    <span class="c1"># close the file</span>
-    <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="c1"># delete test file</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-
-    <span class="c1"># use original db path</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span></div>
-
-
-<div class="viewcode-block" id="test_store_run_step_info"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_step_info">[docs]</a><span class="k">def</span> <span class="nf">test_store_run_step_info</span><span class="p">():</span>
-    <span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">    This unit test checks that the entries ``store_run_step_info()`</span>
-<span class="sd">    stores in the database match the corresponding entries from the input</span>
-<span class="sd">    explicity in value and implicitly in type.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="c1"># read data</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">read_depcode_step_param</span><span class="p">()</span>
-    <span class="n">step_info</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">sim_depcode</span><span class="o">.</span><span class="n">param</span>
-
-    <span class="c1"># we want to keep the old path for other sims, but for this</span>
-    <span class="c1"># test we&#39;ll want a fresh db</span>
-    <span class="n">db_path_old</span> <span class="o">=</span> <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span>
-    <span class="n">db_file</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">iter_inputfile</span> <span class="o">+</span> <span class="s1">&#39;.h5&#39;</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_file</span>
-
-    <span class="c1"># store data at</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">store_run_step_info</span><span class="p">()</span>
-
-    <span class="c1"># read stored data</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">db</span> <span class="o">=</span> <span class="n">tb</span><span class="o">.</span><span class="n">open_file</span><span class="p">(</span><span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span>
-                          <span class="n">filters</span><span class="o">=</span><span class="n">simulation</span><span class="o">.</span><span class="n">compression_params</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Unable to assign correct value to db.</span><span class="se">\</span>
-<span class="s1">              See error stack for more info.&#39;</span><span class="p">)</span>
-
-    <span class="n">tstep_info</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">simulation_parameters</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">tstep_info</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span>
-                              <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;beta_eff&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">tstep_info</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span>
-                              <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;breeding_ratio&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">==</span> <span class="n">simulation</span><span class="o">.</span><span class="n">burn_time</span>
-        <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">tstep_info</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
-                              <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;delayed_neutrons_lambda&#39;</span><span class="p">]</span><span class="o">.</span>
-                              <span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> <span class="o">==</span> <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_bds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> <span class="o">==</span> <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;fission_mass_eds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">tstep_info</span><span class="p">[</span><span class="mi">6</span><span class="p">],</span>
-                              <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_bds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">tstep_info</span><span class="p">[</span><span class="mi">7</span><span class="p">],</span>
-                              <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;keff_eds&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">))</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">8</span><span class="p">]</span> <span class="o">==</span> <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;memory_usage&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">9</span><span class="p">]</span> <span class="o">==</span> <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;power_level&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">)</span>
-        <span class="k">assert</span> <span class="n">tstep_info</span><span class="p">[</span><span class="mi">10</span><span class="p">]</span> <span class="o">==</span> <span class="n">step_info</span><span class="p">[</span><span class="s1">&#39;execution_time&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;float32&#39;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">AssertionError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">AssertionError</span><span class="p">(</span><span class="s2">&quot;incorrect Value&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="k">raise</span> <span class="ne">KeyError</span><span class="p">(</span><span class="s2">&quot;incorrect key&quot;</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">BaseException</span><span class="p">:</span>
-        <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-        <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-        <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;something went wrong. See error stack for details&quot;</span><span class="p">)</span>
-
-    <span class="c1"># close the file</span>
-    <span class="n">db</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="c1"># delete test file</span>
-    <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">db_file</span><span class="p">)</span>
-
-    <span class="c1"># use original db path</span>
-    <span class="n">simulation</span><span class="o">.</span><span class="n">db_path</span> <span class="o">=</span> <span class="n">db_path_old</span></div>
-
-
-<div class="viewcode-block" id="test_read_k_eds_delta"><a class="viewcode-back" href="../../../src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta">[docs]</a><span class="k">def</span> <span class="nf">test_read_k_eds_delta</span><span class="p">():</span>
-    <span class="k">assert</span> <span class="n">simulation</span><span class="o">.</span><span class="n">read_k_eds_delta</span><span class="p">(</span><span class="mi">7</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span></div>
-</pre></div>
-
-           </div>
-          </div>
-          <footer>
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p></p>
-  </div>
-
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
-
-</footer>
-        </div>
-      </div>
-    </section>
-  </div>
-  
-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="test_simulation.html">v0.4.0</a></dd>
-    </dl>
-    <dl>
-      <dt>Branches</dt>
-      <dd><a href="../../../../master/index.html">master</a></dd>
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\ No newline at end of file
diff --git a/v0.4.0/_modules/saltproc/tests/test_sparger.html b/v0.4.0/_modules/saltproc/tests/test_sparger.html
deleted file mode 100644
index 8c6f8229a..000000000
--- a/v0.4.0/_modules/saltproc/tests/test_sparger.html
+++ /dev/null
@@ -1,163 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" >
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-  <meta charset="utf-8" />
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-             
-  <h1>Source code for saltproc.tests.test_sparger</h1><div class="highlight"><pre>
-<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">Sparger</span>
-<span class="kn">from</span> <span class="nn">saltproc</span> <span class="kn">import</span> <span class="n">DepcodeSerpent</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">realpath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">)</span>
-<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)))</span>
-<span class="c1"># global class object</span>
-<span class="n">directory</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-<span class="n">iter_inputfile</span> <span class="o">=</span> <span class="n">directory</span> <span class="o">+</span> <span class="s1">&#39;/test&#39;</span>
-
-<span class="n">serpent</span> <span class="o">=</span> <span class="n">DepcodeSerpent</span><span class="p">(</span>
-    <span class="n">exec_path</span><span class="o">=</span><span class="s1">&#39;/home/andrei2/serpent/serpent2/src_2131/sss2&#39;</span><span class="p">,</span>
-    <span class="n">template_inputfile_path</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/template.inp&#39;</span><span class="p">,</span>
-    <span class="n">iter_inputfile</span><span class="o">=</span><span class="n">iter_inputfile</span><span class="p">,</span>
-    <span class="n">iter_matfile</span><span class="o">=</span><span class="n">directory</span> <span class="o">+</span>
-    <span class="s1">&#39;/material&#39;</span><span class="p">,</span>
-    <span class="n">geo_files</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-
-<span class="n">process</span> <span class="o">=</span> <span class="n">Sparger</span><span class="p">(</span><span class="n">mass_flowrate</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span>
-                  <span class="n">capacity</span><span class="o">=</span><span class="mf">99.0</span><span class="p">,</span>
-                  <span class="n">volume</span><span class="o">=</span><span class="mf">95.0</span><span class="p">,</span>
-                  <span class="n">efficiency</span><span class="o">=</span><span class="s2">&quot;self&quot;</span><span class="p">)</span>
-
-
-<div class="viewcode-block" id="test_rem_elements"><a class="viewcode-back" href="../../../src/saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements">[docs]</a><span class="k">def</span> <span class="nf">test_rem_elements</span><span class="p">():</span>
-    <span class="n">mats</span> <span class="o">=</span> <span class="n">serpent</span><span class="o">.</span><span class="n">read_dep_comp</span><span class="p">(</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">waste</span> <span class="o">=</span> <span class="n">process</span><span class="o">.</span><span class="n">rem_elements</span><span class="p">(</span><span class="n">mats</span><span class="p">[</span><span class="s1">&#39;fuel&#39;</span><span class="p">])</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541350000</span><span class="p">],</span> <span class="mf">8.061014535231715</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541360000</span><span class="p">],</span> <span class="mf">71.8437109936129</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541280000</span><span class="p">],</span> <span class="mf">4.0358120454079906e-05</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">541390000</span><span class="p">],</span> <span class="mf">0.010650902326605592</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360790000</span><span class="p">],</span> <span class="mf">6.420212330439721e-17</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360800000</span><span class="p">],</span> <span class="mf">7.029023635956131e-07</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360920000</span><span class="p">],</span> <span class="mf">0.00011634701042301513</span><span class="p">)</span>
-    <span class="n">np</span><span class="o">.</span><span class="n">testing</span><span class="o">.</span><span class="n">assert_almost_equal</span><span class="p">(</span><span class="n">waste</span><span class="p">[</span><span class="mi">360860000</span><span class="p">],</span> <span class="mf">11.463212220507412</span><span class="p">)</span>
-    <span class="k">assert</span> <span class="n">waste</span><span class="o">.</span><span class="n">mass</span> <span class="o">==</span> <span class="mf">217.43479356542446</span></div>
-</pre></div>
-
-           </div>
-          </div>
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-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
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-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: v0.4.0
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
-    <dl>
-      <dt>Tags</dt>
-      <dd><a href="../../../../v0.3.0/index.html">v0.3.0</a></dd>
-      <dd><a href="test_sparger.html">v0.4.0</a></dd>
-    </dl>
-    <dl>
-      <dt>Branches</dt>
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diff --git a/v0.4.0/_sources/devguide/contributing.rst.txt b/v0.4.0/_sources/devguide/contributing.rst.txt
deleted file mode 100644
index 5674d7819..000000000
--- a/v0.4.0/_sources/devguide/contributing.rst.txt
+++ /dev/null
@@ -1,110 +0,0 @@
-Contributing
-============
-
-Thanks for Your Help!
----------------------
-
-Contributing is so kind of you. In SaltProc, all contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome.
-
-The `GitHub "issues" tab <https://github.com/arfc/saltproc/issues>`__ contains some issues labeled "Difficulty:1-Beginner". Those are open issues that would be a good quick way to get started. Browse them to see if you want to get started on one.
-
-Bug Reports
-~~~~~~~~~~~
-
-Is something in the code not working? Consider making a bug report! In particular:
-
--  Please include a short but detailed, self-contained Python snippet or explanation for reproducing the problem.
-
--  Explain what the expected behavior was, and what you saw instead.
-
-Feature Requests
-~~~~~~~~~~~~~~~~
-
-If you have an idea that could add to or improve SaltProc, and know how to implement it, consider making a Feature Request!
-
-Discussion
-~~~~~~~~~~
-
-If you
-
--  have feedback or a feature idea that aren't concrete/focused enough to go into a Feature Request Issue
--  want to show off cool work you have done with the software
-
-please use our `Discussions page <https://github.com/arfc/saltproc/discussions>`__!
-
-Instructions for setting up a development environment
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The SaltProc is compatible with Python >=3.5. Anaconda is the recommended distribution to use to work on SAltProc; we will assume that if you want to use another distribution or your own set up, you can translate the instructions.
-
-You can download Anaconda at https://www.continuum.io/Downloads for the full install. You can also download a mini Anaconda install for a bare-bones install -- this is good for a build server or if you don't have much space. The mini Anaconda installs are available at https://conda.io/miniconda.html.
-
-Once your Anaconda package is installed and available, create a Python 3.6 environment in Anaconda --
-
-::
-
-   conda create -q -n saltproc-test-environment python=3.6 scipy numpy matplotlib pytest pytables flake8
-
-Each of these commands will take a bit of time -- give it a few minutes to download and install the packages and their dependences. Once complete, switch to each and install additional packages needed to run and test.
-
-Activate the 3.6 environment and install pyne, networkx and pydotplus
-
-::
-
-   source activate saltproc-test-environment
-   conda install -c conda-forge pyne networkx pydotplus
-
-Setup Serpent Monte Carlo code environment
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-The SaltProc assumes that Serpent directory is added in ``$PATH`` as follows:
-
-::
-
-   export PATH="/path/to/serpent/executable:$PATH"
-
-Run the tests
-^^^^^^^^^^^^^
-
-Tests are automatically detected and run with pytest. Start in the root directory where you have cloned the saltproc repository and run in development environment
-
-::
-
-   source active saltproc-test-environment
-   py.test saltproc
-
-Run style tests with flake8
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Adherance to style checks in flake8 is encouraged though not strictly enforced. While you should not feel compelled to fix existing failures, please do not add additional flake8 issues.
-
-::
-
-   run flake8 from the root of the pyrk working directory to get all flake8 issues
-   run flake8 and provide a filename to just run checks on that file
-
-Pull Requests
-^^^^^^^^^^^^^
-
-Please use the provided pull request template. In particular:
-
--  **Make sure the test suite passes** on your computer. To do so, run ``py.test saltproc`` in the repository directory. At a minumum, you must run the tests requring serpent locally as they are not tested by our CI
--  Describe your feature/change/fix in the release notes (located in ``doc/releasenotes``) for the currently in-development release version. Use the descriptive comments and examples as reference.
--  Please reference relevant Github issues in your commit message using ``GH1234`` or ``#1234``.
--  Changes should be PEP8 compatible `PEP8 <http://www.python.org/dev/peps/pep-0008/>`__.
--  Keep style fixes to a separate commit to make your PR more readable.
--  Docstrings ideally follow the `sphinx autodoc <https://pythonhosted.org/an_example_pypi_project/sphinx.html#function-definitions>`__
--  Write tests.
--  When writing tests, please make sure they are in a ``tests`` directory.
--  When you start working on a PR, start by creating a new branch pointing at the latest commit on github master.
--  The SaltProc copyright policy is detailed in the `LICENSE <https://github.com/arfc/saltproc/blob/master/LICENSE>`__.
-
-More developer docs
-~~~~~~~~~~~~~~~~~~~
-
--  We are working on it.
-
-Meta
-~~~~
-
-Note, this contributing file was adapted from the one at the `pandas <https://github.com/pydata/pandas>`__ repo. Thanks pandas!
diff --git a/v0.4.0/_sources/devguide/index.rst.txt b/v0.4.0/_sources/devguide/index.rst.txt
deleted file mode 100644
index e3141e898..000000000
--- a/v0.4.0/_sources/devguide/index.rst.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-.. _devguide:
-
-=================
-Developer's Guide
-=================
-.. _git workflow: https://git-scm.com/book/en/v2/Getting-Started-About-Version-Control
-
-Welcome to the SaltProc developer's guide. Here you'll find
-all the information you need to be an efficient and effective contributor
-to SaltProc.
-
-.. note:: The SaltProc developer's guide is a work in progress. 
-   Information contained within may change, so make sure to check the 
-   release notes for updates!
-
-If you're new to software development, please familiarize yourself with the
-`git workflow`_ before getting started. We'll be using terminoigy
-in this developer's guide that relies on understanding it.
-
-.. toctree::
-   :maxdepth: 1
-
-   contributing
diff --git a/v0.4.0/_sources/examples.rst.txt b/v0.4.0/_sources/examples.rst.txt
deleted file mode 100644
index 4f1f2c98f..000000000
--- a/v0.4.0/_sources/examples.rst.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-Examples
-=========
-
-A number of examples are present in the `examples directory`_ provided with the source code.
-
-.. _examples directory: https://github.com/arfc/saltproc/tree/master/examples
-
-Transatomic Power Molten Salt Reactor example can be run with:
-
-
-.. code-block:: bash
-
-   cd /path/to/saltproc
-   python saltproc -i examples/tap/tap_main.json
-
-
-In the example above, ``path/to/saltproc`` is, of course, the path to the main
-saltproc directory, containing ``setup.py``. The ``tap_main.json`` is the main
-Saltproc input file, which contains paths to Serpent input file
-(``tap.serpent``), DOT-file with reprocessing scheme (``tap.dot``), and
-reprocessing system components' detailed description (``tap_objects.json``).
-
-
-Similarly, Molten Salt Breeder Reactor example can be run with:
-
-
-.. code-block:: bash
-
-   python saltproc -i examples/msbr/msbr_main.json
diff --git a/v0.4.0/_sources/index.rst.txt b/v0.4.0/_sources/index.rst.txt
deleted file mode 100644
index a6e961d8e..000000000
--- a/v0.4.0/_sources/index.rst.txt
+++ /dev/null
@@ -1,88 +0,0 @@
-.. Saltproc documentation master file, created by
-   sphinx-quickstart on Tue Jul  3 14:26:54 2018.
-   You can adapt this file completely to your liking, but it should at least
-   contain the root `toctree` directive.
-
-SaltProc
-=========
-
-**SaltProc** is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the Serpent 2 Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
-calculation.
-
-**SaltProc** welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including `pyne`_, `numpy`_, `matplotlib`_,
-`networkx`_, and `pydotplus`_.
-
-.. _pyne: http://pyne.io/
-.. _numpy: http://numpy.org
-.. _matplotlib: http://matplotlib.org
-.. _networkx: http://networkx.github.io
-.. _pydotplus: https://pydotplus.readthedocs.io/
-
-
-Documentation
--------------
-
-.. toctree::
-   :maxdepth: 1
-
-   overview
-   installation
-   examples
-   src/index
-   releasenotes/index
-   devguide/index
-   How to cite <https://github.com/arfc/saltproc/blob/master/CITATION.md>
-
-Indices and tables
-------------------
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-
-
-
-Citation
---------
-
-Up-to-date information about citing SaltProc can be found within the `citation`_
-file.
-
-.. _citation: https://github.com/arfc/saltproc/blob/master/CITATION.md
-
-
-Get in touch
-------------
-
-- Please report bugs, suggest feature ideas, and browse the source code `on GitHub`_.
-- There, new contributors can also find `a guide to contributing`_.
-- Good start point for new contributors is `current open issues`_.
-
-.. _a guide to contributing: https://github.com/arfc/saltproc/blob/master/CONTRIBUTING.md
-.. _current open issues: https://github.com/arfc/saltproc/issues?q=is%3Aopen+is%3Aissue
-.. _on GitHub: http://github.com/arfc/saltproc
-
-Acknowledgment
---------------
-
-SaltProc uses `Shablona`_ template which is universal solution for small
-scientific python projects developed at University of Washington `eScience Insititute`_.
-
-`OpenMC's docpages`_ heavily inspired the strucutre and format for SaltProc's docpages.
-
-We make our versioned documentation using `sphinx-multiversion`_.
-
-.. _sphinx-multiversion: https://github.com/Holzhaus/sphinx-multiversion
-.. _OpenMC's docpages: https://docs.openmc.org/en/stable/index.html
-.. _Shablona: https://github.com/uwescience/shablona
-.. _eScience Insititute: https://escience.washington.edu
-
-License
--------
-
-SaltProc is available under the open source `BSD 3-clause License`__.
-
-__ https://raw.githubusercontent.com/arfc/saltproc/master/LICENSE
diff --git a/v0.4.0/_sources/installation.rst.txt b/v0.4.0/_sources/installation.rst.txt
deleted file mode 100644
index 923471212..000000000
--- a/v0.4.0/_sources/installation.rst.txt
+++ /dev/null
@@ -1,104 +0,0 @@
-Installation
-============
-
-SaltProc has the following dependencies:
-
-  #. `Python`_ (>=3.5)
-  #. `Serpent`_ (>=2.1.31)
-  #. `PyNE`_ (>=0.5.11)
-  #. `NumPy`_ (>=1.14.0)
-  #. `PyTables`_
-  #. `NetworkX`_
-  #. `PyDotPlus`_
-  #. `jsonschema`_
-
-.. _Serpent: http://montecarlo.vtt.fi
-.. _PyNE: http://pyne.io
-.. _Python: http://python.org
-.. _NumPy: http://numpy.org
-.. _PyTables: http://pytables.org
-.. _NetworkX: http://networkx.github.io
-.. _PyDotPlus: https://pydotplus.readthedocs.io/
-.. _pytest: https://docs.pytest.org
-.. _sphinx: https://www.sphinx-doc.org
-.. _sphinx-rtd-theme: https://sphinx-rtd-theme.readthedocs.io
-.. _matplotlib: http://matplotlib.org
-.. _ViTables: http://vitables.org
-.. _GitHub: http://github.com/arfc/saltproc
-.. _jsonschema: https://github.com/Julian/jsonschema
-.. _conda package manager: https://docs.conda.io/en/latest/
-.. _mamba: https://github.com/mamba-org/mamba
-
-Optional Depenendencies:
-  #. `pytest`_ (for testing)
-  #. `sphinx`_ and `sphinx-rtd-theme`_ (for building documentation)
-  #. `matplotlib`_
-  #. `ViTables`_
-
-
-
-Clone the source from the SaltProc repository from `GitHub`_.
-
-.. code-block:: bash
-
-   git clone git@github.com:arfc/saltproc.git
-
-All of the dependencies are readily available through the `conda package manager`_.
-
-.. note:: We recommend using the `mamba`_ CLI tool to install packages quickly. SaltProc has a compltex package dependency structure which can result is long environment solve times in the default ``conda`` solver. ``mamba`` is a reimplementation of ``conda`` in ``C++`` and we have found it is significantly faster.
-
-You can download the required ones using ``conda`` on the provided ``environment.yml``
-file in the repository:
-
-.. code-block:: bash
-    
-   cd saltproc/
-   conda env create -f environment.yml
-
-Once all the dependencies are installed, SaltProc can be installed by
-running the following commands from within the cloned directory
-repository (assuming the `saltproc-env` environment is active):
-
-.. code-block:: bash
-
-   pip install .
-
-Please let us know if you run into trouble.
-
-Cross Section Configuration
----------------------------
-SaltProc can use any cross section library that Serpent can. See `this page on the Serpent wiki`_ for information on how to configure the libraries. 
-
-.. _this page on the Serpent wiki: https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries
-
-Testing
--------
-The SaltProc test suite has two types of tests: unit tests and regression tests.
-The unit tests check that the individual functions and classes of the ``saltproc``
-module return the correct type of variables and correct values, where applicable. 
-The regression tests run a full SaltProc simulation and check the final result
-with a precalculated result. 
-The integration tests require the `JEFF 3.1.2 cross section library`_ as well
-as neutron induces and spontaneous fission product yield data from JEFF 3.3. 
-The publicly available versions of JEFF 3.1.2  cannot be used with Serpent right
-out of the box due to `Serpent's notation for isomeric states`_. The scripts in
-``scripts/xsdata`` download all necessary libraries and perform all the necessary processing on them for use in Serpent 2.
-We recommend using them for your convenience. 
-See the `README`_ for more information.
-
-.. _Serpent's notation for isomeric states: https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries
-.. _JEFF 3.1.2 cross section library: https://www.oecd-nea.org/dbforms/data/eva/evatapes/jeff_31/JEFF312/
-.. _README: https://github.com/arfc/saltproc/blob/master/scripts/README.md
-
-To run the tests, execute:
-
-.. code-block:: bash
-
-   pytest saltproc/
-
-from the root directory of SaltProc. If you just want to run the unit tests, execute
-
-.. code-block:: bash
-
-   pytest --ignore saltproc/tests/integration_tests saltproc/
-
diff --git a/v0.4.0/_sources/overview.rst.txt b/v0.4.0/_sources/overview.rst.txt
deleted file mode 100644
index 82d263510..000000000
--- a/v0.4.0/_sources/overview.rst.txt
+++ /dev/null
@@ -1,87 +0,0 @@
-Overview
-=========
-
-SaltProc couples directly with the Monte Carlo neutron transport code Serpent 2
-and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:
-
-- neutron poison removal with user-defined efficiency,
-- make-up mass loss by fresh fuel injection,
-- reactivity control by adjusting fuel feed rate or geometry change,
-- can model any reactor design,
-- potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).
-
-
-How SaltProc works
--------------------
-
-SaltProc is a driver for Serpent to simulate online fuel salt reprocessing for
-Molten Salt Reactors. It performs following major functions:
-
-  - runs SERPENT
-  - parses and stores Serpent output data in HDF5
-  - modifies parsed material composition (`reprocesses`)
-  - creates Serpent input file
-
-
-The code logic flow is the following:
-
-  1. Runs Serpent (`saltproc.depcode.run_depcode()`)
-  2. Parses through the output `*_dep.m` file and creates PyNE Material object
-     for each burnable material.
-  3. Processes Fuel (`saltproc.app.reprocessing()` and `saltproc.refill`):
-
-    * Passes fuel composition throughout Processes objects (reprocessing system
-      components) to remove poisons with specific efficiency.
-    * Adds back fissile and/or fertile material to make-up loss of material.
-
-  4. Records data:
-
-    - Depleted fuel composition (`materials/fuel/before_reproc` table in HDF5)
-    - Reprocessed fuel composition (`materials/fuel/after_reproc` table in
-      HDF5)
-    - Multiplication factor at the beginning and at the end of depletion step
-      (`simulation_parameters/keff_bds`, `simulation_parameters/keff_eds`)
-    - Effective Delayed Neutron Fraction (:math:`\beta_{eff}`) at the end of
-      the depletion step (`simulation_parameters/beta_eff_eds`)
-    - Waste and feed streams from each `Process` (`materials/in_out_streams/`)
-
-  5. Repeats 1-4.
-
-Updates
--------
-
-March 2021:
-
-Besides the existing flexibility like fixed removal efficiency definition for
-each target isotope defined in the object input file, Saltproc code now
-comprises `Sparging System package` that calculates removal efficiencies for
-various target isotopes (i.e., Xe, Kr, and H). To enable this feature, use
-the `"self"` command in the input file in the `"efficiency"` object names of
-Sparger and Separator components. Each component can be employed separately.
-An example is given below. In the example, capacity and mass flow rate are in
-`g/s` unit while volume is in `cm`:math:`^3` unit.
-
-"sparger": { "capacity": 9920000,
-			 "efficiency": "self",
-			 "mass_flowrate": 9920000,
-			 "volume": 10000000 },
-"entrainment_separator": { "capacity": 9920000,
-						   "efficiency": "self",
-						   "mass_flowrate": 9920000,
-						   "volume": 11 }
-
-The Future
------------
-
-A number of features will be implemented in SaltProc soon. Support of various
-depletion codes (e.g., OpenMC) will be added.
-
-
-.. warning::
-
-    SaltProc is a relatively new project and is still under heavy development.
-    Although we will make our best effort to maintain compatibility with the
-    current API, inevitably the API will change in future versions as SaltProc
-    matures.
diff --git a/v0.4.0/_sources/releasenotes/index.rst.txt b/v0.4.0/_sources/releasenotes/index.rst.txt
deleted file mode 100644
index 6a08ee65a..000000000
--- a/v0.4.0/_sources/releasenotes/index.rst.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-.. _releasenotes:
-
-=============
-Release Notes
-=============
-
-.. toctree::
-  :maxdepth: 1
-  
-  v0.4.0
-  v0.3.0
diff --git a/v0.4.0/_sources/releasenotes/template.rst.txt b/v0.4.0/_sources/releasenotes/template.rst.txt
deleted file mode 100644
index 271777a93..000000000
--- a/v0.4.0/_sources/releasenotes/template.rst.txt
+++ /dev/null
@@ -1,96 +0,0 @@
-========================
-Release notes for vx.x.x
-========================
-
-.. note:: These release notes are currently in production.
-
-..
-  When documenting a bug fix or feature, please do so in the following format
-
-..
-  - `Fixed typo in depcode.py <https://github.com/arfc/saltproc/pull/xx>`_ by @pr_author_username
-
-..
-  Links to packages/issues/bug fixes/contributors/reviewers
-
-
-
-
-Summary
-=======
-
-.. 
-  Describe generally the features of this release
-
-
-
-
-Dependency Changes
-==================
-
-..
-  Describe any new/removed/modified package dependencies
-
-
-
-
-New Features
-============
-
-..
-  Describe any new features to the code.
-
-
-
-
-Bug Fixes
-=========
-
-..
-  Describe any bug fixes.
-
-
-
-
-Script Changes
-==============
-
-..
-  Describe any script additions/modifications/removals
-
-
-
-
-Python API Changes
-==================
-
-..
-  Describe any changes to the API
-
-
-
-
-Contributors
-============
-..
-  List of people who contributed features and fixes to this release
-
-The following people contributed code to this release of SaltProc:
-
-..
-  `@gh_username <https://github.com/gh_uname>`_
-
-
-
-
-Reviewers
-=========
-..
-  List of people who reviewed PRs for this release
-
-The following people reviewed code for this release of SaltProc:
-
-..
-  `@gh_username <https://github.com/gh_uname>`_
-
-
diff --git a/v0.4.0/_sources/releasenotes/v0.3.0.rst.txt b/v0.4.0/_sources/releasenotes/v0.3.0.rst.txt
deleted file mode 100644
index 4e64855c1..000000000
--- a/v0.4.0/_sources/releasenotes/v0.3.0.rst.txt
+++ /dev/null
@@ -1,56 +0,0 @@
-========================
-Release notes for v0.3.0
-========================
-
-This release of SaltProc adds several new features, including a refactor of ``depcode``, updated documentation, and installation guides. Make sure you apply `this bug fix <https://ttuki.vtt.fi/serpent/viewtopic.php?f=25&t=3682&start=20#p12675>`__ in your Serpent2 code if you haven't already.
-
-New Features
-============
-
--  Complete refactor of the code into object-oriented python.
--  Adds a Sparging system package -- contained in the ``sparger`` and ``separator`` modules -- that calculates removal efficiencies for various target isotopes (i.e. Xe, Kr, H).
--  Adds a script for creating a Serpent2 compatible cross section library
--  Refactors the ``depcode`` module by making ``Depcode`` a purley abstract class; add the ``DepcodeSerpent`` class which is an instance of ``Depcode``
-
-Bug Fixes
-=========
-
--  `Remove cruft in master <https://github.com/arfc/saltproc/pull/86>`__
--  `Update Geometry file syntax to Serpent 2 standards <https://github.com/arfc/saltproc/pull/89>`__
--  `Update issue and PR templates <https://github.com/arfc/saltproc/pull/75>`__
--  `Fix incorrect variable call in ``app.read_dot`` <https://github.com/arfc/saltproc/pull/63>`__
--  `Fix typos in documentation <https://github.com/arfc/saltproc/pull/90>`__
-
-Commit list
-===========
-
--  Isotope find by @jbae11 in https://github.com/arfc/saltproc/pull/23
--  Saltproc capability addition and UI improvement by @jbae11 in https://github.com/arfc/saltproc/pull/29
--  Completely refactored and changed after latest Teddy's release (0.2.0) by @andrewryh in https://github.com/arfc/saltproc/pull/37
--  Update README.md only to address #41 by @andrewryh in https://github.com/arfc/saltproc/pull/45
--  Bringing SaltProc repository up to date by @andrewryh in https://github.com/arfc/saltproc/pull/47
--  Scripts and input files for sensitivity analysis of msbr design by @mehmeturkmen in https://github.com/arfc/saltproc/pull/48
--  Saltproc multiple run flexibility by @mehmeturkmen in https://github.com/arfc/saltproc/pull/49
--  Adding sparging system to saltproc by @mehmeturkmen in https://github.com/arfc/saltproc/pull/50
--  The updated "overview.rst" file for the latest change in Saltproc by @mehmeturkmen in https://github.com/arfc/saltproc/pull/53
--  Improved separator using Jiaqi's new correlation by @mehmeturkmen in https://github.com/arfc/saltproc/pull/54
--  Create ci.yml by @yardasol in https://github.com/arfc/saltproc/pull/61
--  Call ``name`` instead of ``__string__`` to assign ``mat_name`` by @yardasol in https://github.com/arfc/saltproc/pull/63
--  Add issue + PR templates by @yardasol in https://github.com/arfc/saltproc/pull/66
--  Update README and Contributing by @yardasol in https://github.com/arfc/saltproc/pull/71
--  Refactor depcode by @yardasol in https://github.com/arfc/saltproc/pull/64
--  2nd attempt: Update issue template formatting. by @yardasol in https://github.com/arfc/saltproc/pull/75
--  Update example and integration test input files to serpent 2 syntax by @yardasol in https://github.com/arfc/saltproc/pull/89
--  Remove cruft files from ``master`` branch by @yardasol in https://github.com/arfc/saltproc/pull/86
--  ``doc`` additions, docstring typo fixes, cross section processing scripts by @yardasol in https://github.com/arfc/saltproc/pull/90
--  Patch #90 (pep8 issues, docstring consistency) by @yardasol in https://github.com/arfc/saltproc/pull/92
-
-Contributors
-============
-
--  @yardasol
--  @mehmeturkmen
--  @andrewryh
--  @jbae11
-
-**Full Changelog**: https://github.com/arfc/saltproc/compare/v0.2.0...v0.3.0
diff --git a/v0.4.0/_sources/releasenotes/v0.4.0.rst.txt b/v0.4.0/_sources/releasenotes/v0.4.0.rst.txt
deleted file mode 100644
index eeb2134fd..000000000
--- a/v0.4.0/_sources/releasenotes/v0.4.0.rst.txt
+++ /dev/null
@@ -1,179 +0,0 @@
-========================
-Release notes for v0.4.0
-========================
-
-.. note:: These release notes are currently in production.
-
-..
-  When documenting a bug fix or feature, please do so in the following format
-
-..
-  - `Fixed typo in depcode.py <https://github.com/arfc/saltproc/pull/xx>`_ by @pr_author_username
-
-..
-  Links to packages/issues/bug fixes/contributors/reviewers
-
-.. _jsonschema: https://github.com/Julian/jsonschema
-.. _@yardasol: https://github.com/yardasol
-.. _@abachma2: https://github.com/abachma2
-.. _@ZoeRichter: https://github.com/ZoeRichter
-.. _@gwenchee: https://github.com/gwenchee
-.. _@LukeSeifert: https://github.com/LukeSeifert
-.. _@munkm: https://github.com/munkm
-
-
-Summary
-=======
-
-..
-  Describe generally the features of this release
-
-This version of SaltProc refactors the code in preparation for supporting ``OpenMC``.
-
-
-Dependency Changes
-==================
-
-..
-  Describe any new/removed/modified package dependencies
-
-- Saltproc now requires the following packages
-
-  - (new) → `jsonschema`_
-
-
-New Features
-============
-
-..
-  Describe any new features to the code.
-
-- `Refactor app.py and simulation.py to prepare for OpenMC support <https://github.com/arfc/saltproc/pull/98>`_ by `@yardasol`_
-- `New input file format that is checked against a verifiable JSON Schema <https://github.com/arfc/saltproc/pull/98>`_ by `@yardasol`_
-- `Release notes in the online docs <https://github.com/arfc/saltproc/pull/115>`_ by `@yardasol`_
-
-
-Bug Fixes
-=========
-
-..
-  Describe any bug fixes.
-
-- `Fix typos in process_j312.bash <https://github.com/arfc/saltproc/pull/100>`_
-
-
-Script Changes
-==============
-
-..
-  Describe any script additions/modifications/removals
-
-- The following scripts have been renamed:
-
-  - ``process_j312.sh`` → ``process_j312.bash``
-
-
-Python API Changes
-==================
-
-- New tests for previously untested functions in ``simulation.py``:
-
-  - ``test_check_switch_geo_trigger``
-  - ``test_store_after_repr``
-  - ``test_store_mat_data``
-  - ``test_store_run_init_info``
-  - ``test_store_run_step_info``
- 
-- The following class methods have been added/(re)moved:
-
-  - ``App.check_restart()`` → ``Simulation.check_restart()``
-  - ``Simulation.switch_to_next_geometry`` → ``DepcodeSerpent.switch_to_next_geometry``
-  - ``Simulation.runsim_no_reproc`` → ``test/integration_tests/test_no_reproc_run.py::runsim_no_reproc``
-  - ``Simulation.store_run_step_info``
-  - ``Simulation.store_run_init_info``
-  - (new) → ``Depcode.switch_to_next_geometry``
-  - (new) → ``Depcode.read_depcode_info``
-  - (new) → ``Depcode.read_repcode_step_param``
-  - ``DepcodeSerpent.sss_meta_zzz`` → ``DepcodeSerpent.convert_nuclide_name_serpent_to_zam``
-  - ``DepcodeSerpent.get_tra_or_dec`` → ``DepcodeSerpent.create_nuclide_name_map_zam_to_serpent`` 
-  - ``DepcodeSerpent.read_depcode_template`` → ``DepcodeSerpent.read_plaintext_file``
-
-- Updated input file structure:
-
-  - ``App.depcode_inp`` dictionary
-
-    - (new) → ``App.depcode_inp['codename']``
-    - ``App.exec_path``
-    - ``App.template_file``
-    - ``App.neutron_pop`` → ``App.depcode_inp['npop']``
-    - ``App.active_cycles``
-    - ``App.inactive_cycles``
-    - ``App.geo_file`` → ``App.depcode_inp['geo_file_paths']``
-
-  - ``App.simulation_inp`` dictionary:
-
-    - (new) → ``App.simulation['sim_name']``
-    - ``App.db_file`` → ``App.simulation['db_name']``
-    - ``App.restart_flag``
-    - ``App.adjust_geo``
-
-  - ``App.reactor_inp`` dictionary
-
-    - (new) → ``App.reactor_inp['volume']``
-    - (new) → ``App.reactor_inp['mass_flowrate']``
-    - ``App.power_levels``
-    - ``App.depl_hist`` → ``App.reactor_inp['dep_step_length_cumulative']``
-
-- The following class attributes have been added/(re)moved:
-
-  - ``Depcode`` class:
-
-    - ``template_path`` → ``template_inputfile_path``
-    - ``input_path`` → ``iter_inputfile``
-    - ``geo_file`` → ``geo_files``
-
-  - ``Simulation`` class:
-
-    - ``h5_file`` → ``db_path``
-    - (new) → ``restart_flag``
-    - (new) → ``adjust_geo``
-    - ``iter_matfile`` → (removed)
-
-- The signatures for the following class methods have changed to better make use of object data encapsulation:
-
-  - ``Depcode.read_dep_comp``
-  - ``Depcode.write_depcode_input``
-  - ``Depcode.write_mat_file``
-  - ``DepcodeSerpent.read_depcode_template``
-  - ``DepcodeSerpent.create_nuclide_map_serpent_to_zam``
-
-Contributors
-============
-
-..
-  List of people who contributed features and fixes to this release
-
-The following people contributed code to this release of SaltProc:
-
-..
-  `@gh_username <https://github.com/gh_uname>`_
-
-- `@yardasol`_
-
-
-Reviewers
-=========
-
-..
-  List of people who reviewed PRs for this release
-
-The following people reviewed code for this release of SaltProc:
-
-..
-  `@gh_username <https://github.com/gh_uname>`_
-
-- `@abachma2`_
-- `@ZoeRichter`_
-- `@gwenchee`_
-- `@LukeSeifert`_
-- `@munkm`_
diff --git a/v0.4.0/_sources/src/index.rst.txt b/v0.4.0/_sources/src/index.rst.txt
deleted file mode 100644
index f09f9d4c0..000000000
--- a/v0.4.0/_sources/src/index.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-SaltProc API
-=============
-
-This is automatically generated API documentation from SaltProc source files.
-
-Click the  "modules" (:ref:`modindex`) link to browse the modules.
-Or, dive right into the autogenerated :doc:`saltproc` docs.
diff --git a/v0.4.0/_sources/src/modules.rst.txt b/v0.4.0/_sources/src/modules.rst.txt
deleted file mode 100644
index 1da7d5d98..000000000
--- a/v0.4.0/_sources/src/modules.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc
-========
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc
diff --git a/v0.4.0/_sources/src/saltproc.app.rst.txt b/v0.4.0/_sources/src/saltproc.app.rst.txt
deleted file mode 100644
index a9b319fdd..000000000
--- a/v0.4.0/_sources/src/saltproc.app.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.app module
-===================
-
-.. automodule:: saltproc.app
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.depcode.rst.txt b/v0.4.0/_sources/src/saltproc.depcode.rst.txt
deleted file mode 100644
index 04ca7fc0b..000000000
--- a/v0.4.0/_sources/src/saltproc.depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.depcode module
-=======================
-
-.. automodule:: saltproc.depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.materialflow.rst.txt b/v0.4.0/_sources/src/saltproc.materialflow.rst.txt
deleted file mode 100644
index 31a768303..000000000
--- a/v0.4.0/_sources/src/saltproc.materialflow.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.materialflow module
-============================
-
-.. automodule:: saltproc.materialflow
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.process.rst.txt b/v0.4.0/_sources/src/saltproc.process.rst.txt
deleted file mode 100644
index 2ebcc3e14..000000000
--- a/v0.4.0/_sources/src/saltproc.process.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.process module
-=======================
-
-.. automodule:: saltproc.process
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.reactor.rst.txt b/v0.4.0/_sources/src/saltproc.reactor.rst.txt
deleted file mode 100644
index 07925c97a..000000000
--- a/v0.4.0/_sources/src/saltproc.reactor.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.reactor module
-=======================
-
-.. automodule:: saltproc.reactor
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.rst.txt b/v0.4.0/_sources/src/saltproc.rst.txt
deleted file mode 100644
index a7888ebbc..000000000
--- a/v0.4.0/_sources/src/saltproc.rst.txt
+++ /dev/null
@@ -1,34 +0,0 @@
-saltproc package
-================
-
-Subpackages
------------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.tests
-
-Submodules
-----------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.app
-   saltproc.depcode
-   saltproc.materialflow
-   saltproc.process
-   saltproc.reactor
-   saltproc.separator
-   saltproc.simulation
-   saltproc.sparger
-   saltproc.version
-
-Module contents
----------------
-
-.. automodule:: saltproc
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.separator.rst.txt b/v0.4.0/_sources/src/saltproc.separator.rst.txt
deleted file mode 100644
index 2228b690c..000000000
--- a/v0.4.0/_sources/src/saltproc.separator.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.separator module
-=========================
-
-.. automodule:: saltproc.separator
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.simulation.rst.txt b/v0.4.0/_sources/src/saltproc.simulation.rst.txt
deleted file mode 100644
index 7572435ea..000000000
--- a/v0.4.0/_sources/src/saltproc.simulation.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.simulation module
-==========================
-
-.. automodule:: saltproc.simulation
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.sparger.rst.txt b/v0.4.0/_sources/src/saltproc.sparger.rst.txt
deleted file mode 100644
index 5460a476c..000000000
--- a/v0.4.0/_sources/src/saltproc.sparger.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.sparger module
-=======================
-
-.. automodule:: saltproc.sparger
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.rst.txt b/v0.4.0/_sources/src/saltproc.tests.rst.txt
deleted file mode 100644
index 024331988..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.rst.txt
+++ /dev/null
@@ -1,24 +0,0 @@
-saltproc.tests package
-======================
-
-Submodules
-----------
-
-.. toctree::
-   :maxdepth: 4
-
-   saltproc.tests.test_app
-   saltproc.tests.test_depcode
-   saltproc.tests.test_materialflow
-   saltproc.tests.test_process
-   saltproc.tests.test_separator
-   saltproc.tests.test_simulation
-   saltproc.tests.test_sparger
-
-Module contents
----------------
-
-.. automodule:: saltproc.tests
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_app.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_app.rst.txt
deleted file mode 100644
index d7674c957..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_app.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_app module
-===============================
-
-.. automodule:: saltproc.tests.test_app
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_depcode.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_depcode.rst.txt
deleted file mode 100644
index 9f4918e71..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_depcode.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_depcode module
-===================================
-
-.. automodule:: saltproc.tests.test_depcode
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_materialflow.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_materialflow.rst.txt
deleted file mode 100644
index 14e2e41c9..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_materialflow.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_materialflow module
-========================================
-
-.. automodule:: saltproc.tests.test_materialflow
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_process.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_process.rst.txt
deleted file mode 100644
index 5b6813db0..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_process.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_process module
-===================================
-
-.. automodule:: saltproc.tests.test_process
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_separator.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_separator.rst.txt
deleted file mode 100644
index 9481465f2..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_separator.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_separator module
-=====================================
-
-.. automodule:: saltproc.tests.test_separator
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_simulation.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_simulation.rst.txt
deleted file mode 100644
index 25aed9803..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_simulation.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_simulation module
-======================================
-
-.. automodule:: saltproc.tests.test_simulation
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.tests.test_sparger.rst.txt b/v0.4.0/_sources/src/saltproc.tests.test_sparger.rst.txt
deleted file mode 100644
index b475f4cf9..000000000
--- a/v0.4.0/_sources/src/saltproc.tests.test_sparger.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.tests.test\_sparger module
-===================================
-
-.. automodule:: saltproc.tests.test_sparger
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_sources/src/saltproc.version.rst.txt b/v0.4.0/_sources/src/saltproc.version.rst.txt
deleted file mode 100644
index 9d7ecdbdf..000000000
--- a/v0.4.0/_sources/src/saltproc.version.rst.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-saltproc.version module
-=======================
-
-.. automodule:: saltproc.version
-   :members:
-   :undoc-members:
-   :show-inheritance:
diff --git a/v0.4.0/_static/_sphinx_javascript_frameworks_compat.js b/v0.4.0/_static/_sphinx_javascript_frameworks_compat.js
deleted file mode 100644
index 8549469dc..000000000
--- a/v0.4.0/_static/_sphinx_javascript_frameworks_compat.js
+++ /dev/null
@@ -1,134 +0,0 @@
-/*
- * _sphinx_javascript_frameworks_compat.js
- * ~~~~~~~~~~
- *
- * Compatability shim for jQuery and underscores.js.
- *
- * WILL BE REMOVED IN Sphinx 6.0
- * xref RemovedInSphinx60Warning
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- * select a different prefix for underscore
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-
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- * small helper function to urldecode strings
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-    return result;
-};
-
-/*
- * backward compatibility for jQuery.browser
- * This will be supported until firefox bug is fixed.
- */
-if (!jQuery.browser) {
-    jQuery.uaMatch = function(ua) {
-        ua = ua.toLowerCase();
-
-        var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
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deleted file mode 100644
index eeb0519a6..000000000
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+++ /dev/null
@@ -1,899 +0,0 @@
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format("woff2"),url(fonts/Roboto-Slab-Bold.woff?bed5564a116b05148e3b3bea6fb1162a) format("woff");font-display:block}
\ No newline at end of file
diff --git a/v0.4.0/_static/doctools.js b/v0.4.0/_static/doctools.js
deleted file mode 100644
index 527b876ca..000000000
--- a/v0.4.0/_static/doctools.js
+++ /dev/null
@@ -1,156 +0,0 @@
-/*
- * doctools.js
- * ~~~~~~~~~~~
- *
- * Base JavaScript utilities for all Sphinx HTML documentation.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-"use strict";
-
-const BLACKLISTED_KEY_CONTROL_ELEMENTS = new Set([
-  "TEXTAREA",
-  "INPUT",
-  "SELECT",
-  "BUTTON",
-]);
-
-const _ready = (callback) => {
-  if (document.readyState !== "loading") {
-    callback();
-  } else {
-    document.addEventListener("DOMContentLoaded", callback);
-  }
-};
-
-/**
- * Small JavaScript module for the documentation.
- */
-const Documentation = {
-  init: () => {
-    Documentation.initDomainIndexTable();
-    Documentation.initOnKeyListeners();
-  },
-
-  /**
-   * i18n support
-   */
-  TRANSLATIONS: {},
-  PLURAL_EXPR: (n) => (n === 1 ? 0 : 1),
-  LOCALE: "unknown",
-
-  // gettext and ngettext don't access this so that the functions
-  // can safely bound to a different name (_ = Documentation.gettext)
-  gettext: (string) => {
-    const translated = Documentation.TRANSLATIONS[string];
-    switch (typeof translated) {
-      case "undefined":
-        return string; // no translation
-      case "string":
-        return translated; // translation exists
-      default:
-        return translated[0]; // (singular, plural) translation tuple exists
-    }
-  },
-
-  ngettext: (singular, plural, n) => {
-    const translated = Documentation.TRANSLATIONS[singular];
-    if (typeof translated !== "undefined")
-      return translated[Documentation.PLURAL_EXPR(n)];
-    return n === 1 ? singular : plural;
-  },
-
-  addTranslations: (catalog) => {
-    Object.assign(Documentation.TRANSLATIONS, catalog.messages);
-    Documentation.PLURAL_EXPR = new Function(
-      "n",
-      `return (${catalog.plural_expr})`
-    );
-    Documentation.LOCALE = catalog.locale;
-  },
-
-  /**
-   * helper function to focus on search bar
-   */
-  focusSearchBar: () => {
-    document.querySelectorAll("input[name=q]")[0]?.focus();
-  },
-
-  /**
-   * Initialise the domain index toggle buttons
-   */
-  initDomainIndexTable: () => {
-    const toggler = (el) => {
-      const idNumber = el.id.substr(7);
-      const toggledRows = document.querySelectorAll(`tr.cg-${idNumber}`);
-      if (el.src.substr(-9) === "minus.png") {
-        el.src = `${el.src.substr(0, el.src.length - 9)}plus.png`;
-        toggledRows.forEach((el) => (el.style.display = "none"));
-      } else {
-        el.src = `${el.src.substr(0, el.src.length - 8)}minus.png`;
-        toggledRows.forEach((el) => (el.style.display = ""));
-      }
-    };
-
-    const togglerElements = document.querySelectorAll("img.toggler");
-    togglerElements.forEach((el) =>
-      el.addEventListener("click", (event) => toggler(event.currentTarget))
-    );
-    togglerElements.forEach((el) => (el.style.display = ""));
-    if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) togglerElements.forEach(toggler);
-  },
-
-  initOnKeyListeners: () => {
-    // only install a listener if it is really needed
-    if (
-      !DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS &&
-      !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS
-    )
-      return;
-
-    document.addEventListener("keydown", (event) => {
-      // bail for input elements
-      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
-      // bail with special keys
-      if (event.altKey || event.ctrlKey || event.metaKey) return;
-
-      if (!event.shiftKey) {
-        switch (event.key) {
-          case "ArrowLeft":
-            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
-
-            const prevLink = document.querySelector('link[rel="prev"]');
-            if (prevLink && prevLink.href) {
-              window.location.href = prevLink.href;
-              event.preventDefault();
-            }
-            break;
-          case "ArrowRight":
-            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
-
-            const nextLink = document.querySelector('link[rel="next"]');
-            if (nextLink && nextLink.href) {
-              window.location.href = nextLink.href;
-              event.preventDefault();
-            }
-            break;
-        }
-      }
-
-      // some keyboard layouts may need Shift to get /
-      switch (event.key) {
-        case "/":
-          if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) break;
-          Documentation.focusSearchBar();
-          event.preventDefault();
-      }
-    });
-  },
-};
-
-// quick alias for translations
-const _ = Documentation.gettext;
-
-_ready(Documentation.init);
diff --git a/v0.4.0/_static/documentation_options.js b/v0.4.0/_static/documentation_options.js
deleted file mode 100644
index c00afe73e..000000000
--- a/v0.4.0/_static/documentation_options.js
+++ /dev/null
@@ -1,14 +0,0 @@
-var DOCUMENTATION_OPTIONS = {
-    URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.4.0',
-    LANGUAGE: 'en',
-    COLLAPSE_INDEX: false,
-    BUILDER: 'html',
-    FILE_SUFFIX: '.html',
-    LINK_SUFFIX: '.html',
-    HAS_SOURCE: true,
-    SOURCELINK_SUFFIX: '.txt',
-    NAVIGATION_WITH_KEYS: false,
-    SHOW_SEARCH_SUMMARY: true,
-    ENABLE_SEARCH_SHORTCUTS: true,
-};
\ No newline at end of file
diff --git a/v0.4.0/_static/file.png b/v0.4.0/_static/file.png
deleted file mode 100644
index a858a410e..000000000
Binary files a/v0.4.0/_static/file.png and /dev/null differ
diff --git a/v0.4.0/_static/jquery-3.6.0.js b/v0.4.0/_static/jquery-3.6.0.js
deleted file mode 100644
index fc6c299b7..000000000
--- a/v0.4.0/_static/jquery-3.6.0.js
+++ /dev/null
@@ -1,10881 +0,0 @@
-/*!
- * jQuery JavaScript Library v3.6.0
- * https://jquery.com/
- *
- * Includes Sizzle.js
- * https://sizzlejs.com/
- *
- * Copyright OpenJS Foundation and other contributors
- * Released under the MIT license
- * https://jquery.org/license
- *
- * Date: 2021-03-02T17:08Z
- */
-( function( global, factory ) {
-
-	"use strict";
-
-	if ( typeof module === "object" && typeof module.exports === "object" ) {
-
-		// For CommonJS and CommonJS-like environments where a proper `window`
-		// is present, execute the factory and get jQuery.
-		// For environments that do not have a `window` with a `document`
-		// (such as Node.js), expose a factory as module.exports.
-		// This accentuates the need for the creation of a real `window`.
-		// e.g. var jQuery = require("jquery")(window);
-		// See ticket #14549 for more info.
-		module.exports = global.document ?
-			factory( global, true ) :
-			function( w ) {
-				if ( !w.document ) {
-					throw new Error( "jQuery requires a window with a document" );
-				}
-				return factory( w );
-			};
-	} else {
-		factory( global );
-	}
-
-// Pass this if window is not defined yet
-} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) {
-
-// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1
-// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode
-// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common
-// enough that all such attempts are guarded in a try block.
-"use strict";
-
-var arr = [];
-
-var getProto = Object.getPrototypeOf;
-
-var slice = arr.slice;
-
-var flat = arr.flat ? function( array ) {
-	return arr.flat.call( array );
-} : function( array ) {
-	return arr.concat.apply( [], array );
-};
-
-
-var push = arr.push;
-
-var indexOf = arr.indexOf;
-
-var class2type = {};
-
-var toString = class2type.toString;
-
-var hasOwn = class2type.hasOwnProperty;
-
-var fnToString = hasOwn.toString;
-
-var ObjectFunctionString = fnToString.call( Object );
-
-var support = {};
-
-var isFunction = function isFunction( obj ) {
-
-		// Support: Chrome <=57, Firefox <=52
-		// In some browsers, typeof returns "function" for HTML <object> elements
-		// (i.e., `typeof document.createElement( "object" ) === "function"`).
-		// We don't want to classify *any* DOM node as a function.
-		// Support: QtWeb <=3.8.5, WebKit <=534.34, wkhtmltopdf tool <=0.12.5
-		// Plus for old WebKit, typeof returns "function" for HTML collections
-		// (e.g., `typeof document.getElementsByTagName("div") === "function"`). (gh-4756)
-		return typeof obj === "function" && typeof obj.nodeType !== "number" &&
-			typeof obj.item !== "function";
-	};
-
-
-var isWindow = function isWindow( obj ) {
-		return obj != null && obj === obj.window;
-	};
-
-
-var document = window.document;
-
-
-
-	var preservedScriptAttributes = {
-		type: true,
-		src: true,
-		nonce: true,
-		noModule: true
-	};
-
-	function DOMEval( code, node, doc ) {
-		doc = doc || document;
-
-		var i, val,
-			script = doc.createElement( "script" );
-
-		script.text = code;
-		if ( node ) {
-			for ( i in preservedScriptAttributes ) {
-
-				// Support: Firefox 64+, Edge 18+
-				// Some browsers don't support the "nonce" property on scripts.
-				// On the other hand, just using `getAttribute` is not enough as
-				// the `nonce` attribute is reset to an empty string whenever it
-				// becomes browsing-context connected.
-				// See https://github.com/whatwg/html/issues/2369
-				// See https://html.spec.whatwg.org/#nonce-attributes
-				// The `node.getAttribute` check was added for the sake of
-				// `jQuery.globalEval` so that it can fake a nonce-containing node
-				// via an object.
-				val = node[ i ] || node.getAttribute && node.getAttribute( i );
-				if ( val ) {
-					script.setAttribute( i, val );
-				}
-			}
-		}
-		doc.head.appendChild( script ).parentNode.removeChild( script );
-	}
-
-
-function toType( obj ) {
-	if ( obj == null ) {
-		return obj + "";
-	}
-
-	// Support: Android <=2.3 only (functionish RegExp)
-	return typeof obj === "object" || typeof obj === "function" ?
-		class2type[ toString.call( obj ) ] || "object" :
-		typeof obj;
-}
-/* global Symbol */
-// Defining this global in .eslintrc.json would create a danger of using the global
-// unguarded in another place, it seems safer to define global only for this module
-
-
-
-var
-	version = "3.6.0",
-
-	// Define a local copy of jQuery
-	jQuery = function( selector, context ) {
-
-		// The jQuery object is actually just the init constructor 'enhanced'
-		// Need init if jQuery is called (just allow error to be thrown if not included)
-		return new jQuery.fn.init( selector, context );
-	};
-
-jQuery.fn = jQuery.prototype = {
-
-	// The current version of jQuery being used
-	jquery: version,
-
-	constructor: jQuery,
-
-	// The default length of a jQuery object is 0
-	length: 0,
-
-	toArray: function() {
-		return slice.call( this );
-	},
-
-	// Get the Nth element in the matched element set OR
-	// Get the whole matched element set as a clean array
-	get: function( num ) {
-
-		// Return all the elements in a clean array
-		if ( num == null ) {
-			return slice.call( this );
-		}
-
-		// Return just the one element from the set
-		return num < 0 ? this[ num + this.length ] : this[ num ];
-	},
-
-	// Take an array of elements and push it onto the stack
-	// (returning the new matched element set)
-	pushStack: function( elems ) {
-
-		// Build a new jQuery matched element set
-		var ret = jQuery.merge( this.constructor(), elems );
-
-		// Add the old object onto the stack (as a reference)
-		ret.prevObject = this;
-
-		// Return the newly-formed element set
-		return ret;
-	},
-
-	// Execute a callback for every element in the matched set.
-	each: function( callback ) {
-		return jQuery.each( this, callback );
-	},
-
-	map: function( callback ) {
-		return this.pushStack( jQuery.map( this, function( elem, i ) {
-			return callback.call( elem, i, elem );
-		} ) );
-	},
-
-	slice: function() {
-		return this.pushStack( slice.apply( this, arguments ) );
-	},
-
-	first: function() {
-		return this.eq( 0 );
-	},
-
-	last: function() {
-		return this.eq( -1 );
-	},
-
-	even: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return ( i + 1 ) % 2;
-		} ) );
-	},
-
-	odd: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return i % 2;
-		} ) );
-	},
-
-	eq: function( i ) {
-		var len = this.length,
-			j = +i + ( i < 0 ? len : 0 );
-		return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] );
-	},
-
-	end: function() {
-		return this.prevObject || this.constructor();
-	},
-
-	// For internal use only.
-	// Behaves like an Array's method, not like a jQuery method.
-	push: push,
-	sort: arr.sort,
-	splice: arr.splice
-};
-
-jQuery.extend = jQuery.fn.extend = function() {
-	var options, name, src, copy, copyIsArray, clone,
-		target = arguments[ 0 ] || {},
-		i = 1,
-		length = arguments.length,
-		deep = false;
-
-	// Handle a deep copy situation
-	if ( typeof target === "boolean" ) {
-		deep = target;
-
-		// Skip the boolean and the target
-		target = arguments[ i ] || {};
-		i++;
-	}
-
-	// Handle case when target is a string or something (possible in deep copy)
-	if ( typeof target !== "object" && !isFunction( target ) ) {
-		target = {};
-	}
-
-	// Extend jQuery itself if only one argument is passed
-	if ( i === length ) {
-		target = this;
-		i--;
-	}
-
-	for ( ; i < length; i++ ) {
-
-		// Only deal with non-null/undefined values
-		if ( ( options = arguments[ i ] ) != null ) {
-
-			// Extend the base object
-			for ( name in options ) {
-				copy = options[ name ];
-
-				// Prevent Object.prototype pollution
-				// Prevent never-ending loop
-				if ( name === "__proto__" || target === copy ) {
-					continue;
-				}
-
-				// Recurse if we're merging plain objects or arrays
-				if ( deep && copy && ( jQuery.isPlainObject( copy ) ||
-					( copyIsArray = Array.isArray( copy ) ) ) ) {
-					src = target[ name ];
-
-					// Ensure proper type for the source value
-					if ( copyIsArray && !Array.isArray( src ) ) {
-						clone = [];
-					} else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) {
-						clone = {};
-					} else {
-						clone = src;
-					}
-					copyIsArray = false;
-
-					// Never move original objects, clone them
-					target[ name ] = jQuery.extend( deep, clone, copy );
-
-				// Don't bring in undefined values
-				} else if ( copy !== undefined ) {
-					target[ name ] = copy;
-				}
-			}
-		}
-	}
-
-	// Return the modified object
-	return target;
-};
-
-jQuery.extend( {
-
-	// Unique for each copy of jQuery on the page
-	expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ),
-
-	// Assume jQuery is ready without the ready module
-	isReady: true,
-
-	error: function( msg ) {
-		throw new Error( msg );
-	},
-
-	noop: function() {},
-
-	isPlainObject: function( obj ) {
-		var proto, Ctor;
-
-		// Detect obvious negatives
-		// Use toString instead of jQuery.type to catch host objects
-		if ( !obj || toString.call( obj ) !== "[object Object]" ) {
-			return false;
-		}
-
-		proto = getProto( obj );
-
-		// Objects with no prototype (e.g., `Object.create( null )`) are plain
-		if ( !proto ) {
-			return true;
-		}
-
-		// Objects with prototype are plain iff they were constructed by a global Object function
-		Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor;
-		return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString;
-	},
-
-	isEmptyObject: function( obj ) {
-		var name;
-
-		for ( name in obj ) {
-			return false;
-		}
-		return true;
-	},
-
-	// Evaluates a script in a provided context; falls back to the global one
-	// if not specified.
-	globalEval: function( code, options, doc ) {
-		DOMEval( code, { nonce: options && options.nonce }, doc );
-	},
-
-	each: function( obj, callback ) {
-		var length, i = 0;
-
-		if ( isArrayLike( obj ) ) {
-			length = obj.length;
-			for ( ; i < length; i++ ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		} else {
-			for ( i in obj ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		}
-
-		return obj;
-	},
-
-	// results is for internal usage only
-	makeArray: function( arr, results ) {
-		var ret = results || [];
-
-		if ( arr != null ) {
-			if ( isArrayLike( Object( arr ) ) ) {
-				jQuery.merge( ret,
-					typeof arr === "string" ?
-						[ arr ] : arr
-				);
-			} else {
-				push.call( ret, arr );
-			}
-		}
-
-		return ret;
-	},
-
-	inArray: function( elem, arr, i ) {
-		return arr == null ? -1 : indexOf.call( arr, elem, i );
-	},
-
-	// Support: Android <=4.0 only, PhantomJS 1 only
-	// push.apply(_, arraylike) throws on ancient WebKit
-	merge: function( first, second ) {
-		var len = +second.length,
-			j = 0,
-			i = first.length;
-
-		for ( ; j < len; j++ ) {
-			first[ i++ ] = second[ j ];
-		}
-
-		first.length = i;
-
-		return first;
-	},
-
-	grep: function( elems, callback, invert ) {
-		var callbackInverse,
-			matches = [],
-			i = 0,
-			length = elems.length,
-			callbackExpect = !invert;
-
-		// Go through the array, only saving the items
-		// that pass the validator function
-		for ( ; i < length; i++ ) {
-			callbackInverse = !callback( elems[ i ], i );
-			if ( callbackInverse !== callbackExpect ) {
-				matches.push( elems[ i ] );
-			}
-		}
-
-		return matches;
-	},
-
-	// arg is for internal usage only
-	map: function( elems, callback, arg ) {
-		var length, value,
-			i = 0,
-			ret = [];
-
-		// Go through the array, translating each of the items to their new values
-		if ( isArrayLike( elems ) ) {
-			length = elems.length;
-			for ( ; i < length; i++ ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-
-		// Go through every key on the object,
-		} else {
-			for ( i in elems ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-		}
-
-		// Flatten any nested arrays
-		return flat( ret );
-	},
-
-	// A global GUID counter for objects
-	guid: 1,
-
-	// jQuery.support is not used in Core but other projects attach their
-	// properties to it so it needs to exist.
-	support: support
-} );
-
-if ( typeof Symbol === "function" ) {
-	jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ];
-}
-
-// Populate the class2type map
-jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ),
-	function( _i, name ) {
-		class2type[ "[object " + name + "]" ] = name.toLowerCase();
-	} );
-
-function isArrayLike( obj ) {
-
-	// Support: real iOS 8.2 only (not reproducible in simulator)
-	// `in` check used to prevent JIT error (gh-2145)
-	// hasOwn isn't used here due to false negatives
-	// regarding Nodelist length in IE
-	var length = !!obj && "length" in obj && obj.length,
-		type = toType( obj );
-
-	if ( isFunction( obj ) || isWindow( obj ) ) {
-		return false;
-	}
-
-	return type === "array" || length === 0 ||
-		typeof length === "number" && length > 0 && ( length - 1 ) in obj;
-}
-var Sizzle =
-/*!
- * Sizzle CSS Selector Engine v2.3.6
- * https://sizzlejs.com/
- *
- * Copyright JS Foundation and other contributors
- * Released under the MIT license
- * https://js.foundation/
- *
- * Date: 2021-02-16
- */
-( function( window ) {
-var i,
-	support,
-	Expr,
-	getText,
-	isXML,
-	tokenize,
-	compile,
-	select,
-	outermostContext,
-	sortInput,
-	hasDuplicate,
-
-	// Local document vars
-	setDocument,
-	document,
-	docElem,
-	documentIsHTML,
-	rbuggyQSA,
-	rbuggyMatches,
-	matches,
-	contains,
-
-	// Instance-specific data
-	expando = "sizzle" + 1 * new Date(),
-	preferredDoc = window.document,
-	dirruns = 0,
-	done = 0,
-	classCache = createCache(),
-	tokenCache = createCache(),
-	compilerCache = createCache(),
-	nonnativeSelectorCache = createCache(),
-	sortOrder = function( a, b ) {
-		if ( a === b ) {
-			hasDuplicate = true;
-		}
-		return 0;
-	},
-
-	// Instance methods
-	hasOwn = ( {} ).hasOwnProperty,
-	arr = [],
-	pop = arr.pop,
-	pushNative = arr.push,
-	push = arr.push,
-	slice = arr.slice,
-
-	// Use a stripped-down indexOf as it's faster than native
-	// https://jsperf.com/thor-indexof-vs-for/5
-	indexOf = function( list, elem ) {
-		var i = 0,
-			len = list.length;
-		for ( ; i < len; i++ ) {
-			if ( list[ i ] === elem ) {
-				return i;
-			}
-		}
-		return -1;
-	},
-
-	booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" +
-		"ismap|loop|multiple|open|readonly|required|scoped",
-
-	// Regular expressions
-
-	// http://www.w3.org/TR/css3-selectors/#whitespace
-	whitespace = "[\\x20\\t\\r\\n\\f]",
-
-	// https://www.w3.org/TR/css-syntax-3/#ident-token-diagram
-	identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace +
-		"?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+",
-
-	// Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors
-	attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace +
-
-		// Operator (capture 2)
-		"*([*^$|!~]?=)" + whitespace +
-
-		// "Attribute values must be CSS identifiers [capture 5]
-		// or strings [capture 3 or capture 4]"
-		"*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" +
-		whitespace + "*\\]",
-
-	pseudos = ":(" + identifier + ")(?:\\((" +
-
-		// To reduce the number of selectors needing tokenize in the preFilter, prefer arguments:
-		// 1. quoted (capture 3; capture 4 or capture 5)
-		"('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" +
-
-		// 2. simple (capture 6)
-		"((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" +
-
-		// 3. anything else (capture 2)
-		".*" +
-		")\\)|)",
-
-	// Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter
-	rwhitespace = new RegExp( whitespace + "+", "g" ),
-	rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" +
-		whitespace + "+$", "g" ),
-
-	rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ),
-	rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace +
-		"*" ),
-	rdescend = new RegExp( whitespace + "|>" ),
-
-	rpseudo = new RegExp( pseudos ),
-	ridentifier = new RegExp( "^" + identifier + "$" ),
-
-	matchExpr = {
-		"ID": new RegExp( "^#(" + identifier + ")" ),
-		"CLASS": new RegExp( "^\\.(" + identifier + ")" ),
-		"TAG": new RegExp( "^(" + identifier + "|[*])" ),
-		"ATTR": new RegExp( "^" + attributes ),
-		"PSEUDO": new RegExp( "^" + pseudos ),
-		"CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" +
-			whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" +
-			whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ),
-		"bool": new RegExp( "^(?:" + booleans + ")$", "i" ),
-
-		// For use in libraries implementing .is()
-		// We use this for POS matching in `select`
-		"needsContext": new RegExp( "^" + whitespace +
-			"*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace +
-			"*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" )
-	},
-
-	rhtml = /HTML$/i,
-	rinputs = /^(?:input|select|textarea|button)$/i,
-	rheader = /^h\d$/i,
-
-	rnative = /^[^{]+\{\s*\[native \w/,
-
-	// Easily-parseable/retrievable ID or TAG or CLASS selectors
-	rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/,
-
-	rsibling = /[+~]/,
-
-	// CSS escapes
-	// http://www.w3.org/TR/CSS21/syndata.html#escaped-characters
-	runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ),
-	funescape = function( escape, nonHex ) {
-		var high = "0x" + escape.slice( 1 ) - 0x10000;
-
-		return nonHex ?
-
-			// Strip the backslash prefix from a non-hex escape sequence
-			nonHex :
-
-			// Replace a hexadecimal escape sequence with the encoded Unicode code point
-			// Support: IE <=11+
-			// For values outside the Basic Multilingual Plane (BMP), manually construct a
-			// surrogate pair
-			high < 0 ?
-				String.fromCharCode( high + 0x10000 ) :
-				String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 );
-	},
-
-	// CSS string/identifier serialization
-	// https://drafts.csswg.org/cssom/#common-serializing-idioms
-	rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g,
-	fcssescape = function( ch, asCodePoint ) {
-		if ( asCodePoint ) {
-
-			// U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER
-			if ( ch === "\0" ) {
-				return "\uFFFD";
-			}
-
-			// Control characters and (dependent upon position) numbers get escaped as code points
-			return ch.slice( 0, -1 ) + "\\" +
-				ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " ";
-		}
-
-		// Other potentially-special ASCII characters get backslash-escaped
-		return "\\" + ch;
-	},
-
-	// Used for iframes
-	// See setDocument()
-	// Removing the function wrapper causes a "Permission Denied"
-	// error in IE
-	unloadHandler = function() {
-		setDocument();
-	},
-
-	inDisabledFieldset = addCombinator(
-		function( elem ) {
-			return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset";
-		},
-		{ dir: "parentNode", next: "legend" }
-	);
-
-// Optimize for push.apply( _, NodeList )
-try {
-	push.apply(
-		( arr = slice.call( preferredDoc.childNodes ) ),
-		preferredDoc.childNodes
-	);
-
-	// Support: Android<4.0
-	// Detect silently failing push.apply
-	// eslint-disable-next-line no-unused-expressions
-	arr[ preferredDoc.childNodes.length ].nodeType;
-} catch ( e ) {
-	push = { apply: arr.length ?
-
-		// Leverage slice if possible
-		function( target, els ) {
-			pushNative.apply( target, slice.call( els ) );
-		} :
-
-		// Support: IE<9
-		// Otherwise append directly
-		function( target, els ) {
-			var j = target.length,
-				i = 0;
-
-			// Can't trust NodeList.length
-			while ( ( target[ j++ ] = els[ i++ ] ) ) {}
-			target.length = j - 1;
-		}
-	};
-}
-
-function Sizzle( selector, context, results, seed ) {
-	var m, i, elem, nid, match, groups, newSelector,
-		newContext = context && context.ownerDocument,
-
-		// nodeType defaults to 9, since context defaults to document
-		nodeType = context ? context.nodeType : 9;
-
-	results = results || [];
-
-	// Return early from calls with invalid selector or context
-	if ( typeof selector !== "string" || !selector ||
-		nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) {
-
-		return results;
-	}
-
-	// Try to shortcut find operations (as opposed to filters) in HTML documents
-	if ( !seed ) {
-		setDocument( context );
-		context = context || document;
-
-		if ( documentIsHTML ) {
-
-			// If the selector is sufficiently simple, try using a "get*By*" DOM method
-			// (excepting DocumentFragment context, where the methods don't exist)
-			if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) {
-
-				// ID selector
-				if ( ( m = match[ 1 ] ) ) {
-
-					// Document context
-					if ( nodeType === 9 ) {
-						if ( ( elem = context.getElementById( m ) ) ) {
-
-							// Support: IE, Opera, Webkit
-							// TODO: identify versions
-							// getElementById can match elements by name instead of ID
-							if ( elem.id === m ) {
-								results.push( elem );
-								return results;
-							}
-						} else {
-							return results;
-						}
-
-					// Element context
-					} else {
-
-						// Support: IE, Opera, Webkit
-						// TODO: identify versions
-						// getElementById can match elements by name instead of ID
-						if ( newContext && ( elem = newContext.getElementById( m ) ) &&
-							contains( context, elem ) &&
-							elem.id === m ) {
-
-							results.push( elem );
-							return results;
-						}
-					}
-
-				// Type selector
-				} else if ( match[ 2 ] ) {
-					push.apply( results, context.getElementsByTagName( selector ) );
-					return results;
-
-				// Class selector
-				} else if ( ( m = match[ 3 ] ) && support.getElementsByClassName &&
-					context.getElementsByClassName ) {
-
-					push.apply( results, context.getElementsByClassName( m ) );
-					return results;
-				}
-			}
-
-			// Take advantage of querySelectorAll
-			if ( support.qsa &&
-				!nonnativeSelectorCache[ selector + " " ] &&
-				( !rbuggyQSA || !rbuggyQSA.test( selector ) ) &&
-
-				// Support: IE 8 only
-				// Exclude object elements
-				( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) {
-
-				newSelector = selector;
-				newContext = context;
-
-				// qSA considers elements outside a scoping root when evaluating child or
-				// descendant combinators, which is not what we want.
-				// In such cases, we work around the behavior by prefixing every selector in the
-				// list with an ID selector referencing the scope context.
-				// The technique has to be used as well when a leading combinator is used
-				// as such selectors are not recognized by querySelectorAll.
-				// Thanks to Andrew Dupont for this technique.
-				if ( nodeType === 1 &&
-					( rdescend.test( selector ) || rcombinators.test( selector ) ) ) {
-
-					// Expand context for sibling selectors
-					newContext = rsibling.test( selector ) && testContext( context.parentNode ) ||
-						context;
-
-					// We can use :scope instead of the ID hack if the browser
-					// supports it & if we're not changing the context.
-					if ( newContext !== context || !support.scope ) {
-
-						// Capture the context ID, setting it first if necessary
-						if ( ( nid = context.getAttribute( "id" ) ) ) {
-							nid = nid.replace( rcssescape, fcssescape );
-						} else {
-							context.setAttribute( "id", ( nid = expando ) );
-						}
-					}
-
-					// Prefix every selector in the list
-					groups = tokenize( selector );
-					i = groups.length;
-					while ( i-- ) {
-						groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " +
-							toSelector( groups[ i ] );
-					}
-					newSelector = groups.join( "," );
-				}
-
-				try {
-					push.apply( results,
-						newContext.querySelectorAll( newSelector )
-					);
-					return results;
-				} catch ( qsaError ) {
-					nonnativeSelectorCache( selector, true );
-				} finally {
-					if ( nid === expando ) {
-						context.removeAttribute( "id" );
-					}
-				}
-			}
-		}
-	}
-
-	// All others
-	return select( selector.replace( rtrim, "$1" ), context, results, seed );
-}
-
-/**
- * Create key-value caches of limited size
- * @returns {function(string, object)} Returns the Object data after storing it on itself with
- *	property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength)
- *	deleting the oldest entry
- */
-function createCache() {
-	var keys = [];
-
-	function cache( key, value ) {
-
-		// Use (key + " ") to avoid collision with native prototype properties (see Issue #157)
-		if ( keys.push( key + " " ) > Expr.cacheLength ) {
-
-			// Only keep the most recent entries
-			delete cache[ keys.shift() ];
-		}
-		return ( cache[ key + " " ] = value );
-	}
-	return cache;
-}
-
-/**
- * Mark a function for special use by Sizzle
- * @param {Function} fn The function to mark
- */
-function markFunction( fn ) {
-	fn[ expando ] = true;
-	return fn;
-}
-
-/**
- * Support testing using an element
- * @param {Function} fn Passed the created element and returns a boolean result
- */
-function assert( fn ) {
-	var el = document.createElement( "fieldset" );
-
-	try {
-		return !!fn( el );
-	} catch ( e ) {
-		return false;
-	} finally {
-
-		// Remove from its parent by default
-		if ( el.parentNode ) {
-			el.parentNode.removeChild( el );
-		}
-
-		// release memory in IE
-		el = null;
-	}
-}
-
-/**
- * Adds the same handler for all of the specified attrs
- * @param {String} attrs Pipe-separated list of attributes
- * @param {Function} handler The method that will be applied
- */
-function addHandle( attrs, handler ) {
-	var arr = attrs.split( "|" ),
-		i = arr.length;
-
-	while ( i-- ) {
-		Expr.attrHandle[ arr[ i ] ] = handler;
-	}
-}
-
-/**
- * Checks document order of two siblings
- * @param {Element} a
- * @param {Element} b
- * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b
- */
-function siblingCheck( a, b ) {
-	var cur = b && a,
-		diff = cur && a.nodeType === 1 && b.nodeType === 1 &&
-			a.sourceIndex - b.sourceIndex;
-
-	// Use IE sourceIndex if available on both nodes
-	if ( diff ) {
-		return diff;
-	}
-
-	// Check if b follows a
-	if ( cur ) {
-		while ( ( cur = cur.nextSibling ) ) {
-			if ( cur === b ) {
-				return -1;
-			}
-		}
-	}
-
-	return a ? 1 : -1;
-}
-
-/**
- * Returns a function to use in pseudos for input types
- * @param {String} type
- */
-function createInputPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return name === "input" && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for buttons
- * @param {String} type
- */
-function createButtonPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return ( name === "input" || name === "button" ) && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for :enabled/:disabled
- * @param {Boolean} disabled true for :disabled; false for :enabled
- */
-function createDisabledPseudo( disabled ) {
-
-	// Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable
-	return function( elem ) {
-
-		// Only certain elements can match :enabled or :disabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled
-		if ( "form" in elem ) {
-
-			// Check for inherited disabledness on relevant non-disabled elements:
-			// * listed form-associated elements in a disabled fieldset
-			//   https://html.spec.whatwg.org/multipage/forms.html#category-listed
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled
-			// * option elements in a disabled optgroup
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled
-			// All such elements have a "form" property.
-			if ( elem.parentNode && elem.disabled === false ) {
-
-				// Option elements defer to a parent optgroup if present
-				if ( "label" in elem ) {
-					if ( "label" in elem.parentNode ) {
-						return elem.parentNode.disabled === disabled;
-					} else {
-						return elem.disabled === disabled;
-					}
-				}
-
-				// Support: IE 6 - 11
-				// Use the isDisabled shortcut property to check for disabled fieldset ancestors
-				return elem.isDisabled === disabled ||
-
-					// Where there is no isDisabled, check manually
-					/* jshint -W018 */
-					elem.isDisabled !== !disabled &&
-					inDisabledFieldset( elem ) === disabled;
-			}
-
-			return elem.disabled === disabled;
-
-		// Try to winnow out elements that can't be disabled before trusting the disabled property.
-		// Some victims get caught in our net (label, legend, menu, track), but it shouldn't
-		// even exist on them, let alone have a boolean value.
-		} else if ( "label" in elem ) {
-			return elem.disabled === disabled;
-		}
-
-		// Remaining elements are neither :enabled nor :disabled
-		return false;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for positionals
- * @param {Function} fn
- */
-function createPositionalPseudo( fn ) {
-	return markFunction( function( argument ) {
-		argument = +argument;
-		return markFunction( function( seed, matches ) {
-			var j,
-				matchIndexes = fn( [], seed.length, argument ),
-				i = matchIndexes.length;
-
-			// Match elements found at the specified indexes
-			while ( i-- ) {
-				if ( seed[ ( j = matchIndexes[ i ] ) ] ) {
-					seed[ j ] = !( matches[ j ] = seed[ j ] );
-				}
-			}
-		} );
-	} );
-}
-
-/**
- * Checks a node for validity as a Sizzle context
- * @param {Element|Object=} context
- * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value
- */
-function testContext( context ) {
-	return context && typeof context.getElementsByTagName !== "undefined" && context;
-}
-
-// Expose support vars for convenience
-support = Sizzle.support = {};
-
-/**
- * Detects XML nodes
- * @param {Element|Object} elem An element or a document
- * @returns {Boolean} True iff elem is a non-HTML XML node
- */
-isXML = Sizzle.isXML = function( elem ) {
-	var namespace = elem && elem.namespaceURI,
-		docElem = elem && ( elem.ownerDocument || elem ).documentElement;
-
-	// Support: IE <=8
-	// Assume HTML when documentElement doesn't yet exist, such as inside loading iframes
-	// https://bugs.jquery.com/ticket/4833
-	return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" );
-};
-
-/**
- * Sets document-related variables once based on the current document
- * @param {Element|Object} [doc] An element or document object to use to set the document
- * @returns {Object} Returns the current document
- */
-setDocument = Sizzle.setDocument = function( node ) {
-	var hasCompare, subWindow,
-		doc = node ? node.ownerDocument || node : preferredDoc;
-
-	// Return early if doc is invalid or already selected
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) {
-		return document;
-	}
-
-	// Update global variables
-	document = doc;
-	docElem = document.documentElement;
-	documentIsHTML = !isXML( document );
-
-	// Support: IE 9 - 11+, Edge 12 - 18+
-	// Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936)
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( preferredDoc != document &&
-		( subWindow = document.defaultView ) && subWindow.top !== subWindow ) {
-
-		// Support: IE 11, Edge
-		if ( subWindow.addEventListener ) {
-			subWindow.addEventListener( "unload", unloadHandler, false );
-
-		// Support: IE 9 - 10 only
-		} else if ( subWindow.attachEvent ) {
-			subWindow.attachEvent( "onunload", unloadHandler );
-		}
-	}
-
-	// Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only,
-	// Safari 4 - 5 only, Opera <=11.6 - 12.x only
-	// IE/Edge & older browsers don't support the :scope pseudo-class.
-	// Support: Safari 6.0 only
-	// Safari 6.0 supports :scope but it's an alias of :root there.
-	support.scope = assert( function( el ) {
-		docElem.appendChild( el ).appendChild( document.createElement( "div" ) );
-		return typeof el.querySelectorAll !== "undefined" &&
-			!el.querySelectorAll( ":scope fieldset div" ).length;
-	} );
-
-	/* Attributes
-	---------------------------------------------------------------------- */
-
-	// Support: IE<8
-	// Verify that getAttribute really returns attributes and not properties
-	// (excepting IE8 booleans)
-	support.attributes = assert( function( el ) {
-		el.className = "i";
-		return !el.getAttribute( "className" );
-	} );
-
-	/* getElement(s)By*
-	---------------------------------------------------------------------- */
-
-	// Check if getElementsByTagName("*") returns only elements
-	support.getElementsByTagName = assert( function( el ) {
-		el.appendChild( document.createComment( "" ) );
-		return !el.getElementsByTagName( "*" ).length;
-	} );
-
-	// Support: IE<9
-	support.getElementsByClassName = rnative.test( document.getElementsByClassName );
-
-	// Support: IE<10
-	// Check if getElementById returns elements by name
-	// The broken getElementById methods don't pick up programmatically-set names,
-	// so use a roundabout getElementsByName test
-	support.getById = assert( function( el ) {
-		docElem.appendChild( el ).id = expando;
-		return !document.getElementsByName || !document.getElementsByName( expando ).length;
-	} );
-
-	// ID filter and find
-	if ( support.getById ) {
-		Expr.filter[ "ID" ] = function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				return elem.getAttribute( "id" ) === attrId;
-			};
-		};
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var elem = context.getElementById( id );
-				return elem ? [ elem ] : [];
-			}
-		};
-	} else {
-		Expr.filter[ "ID" ] =  function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				var node = typeof elem.getAttributeNode !== "undefined" &&
-					elem.getAttributeNode( "id" );
-				return node && node.value === attrId;
-			};
-		};
-
-		// Support: IE 6 - 7 only
-		// getElementById is not reliable as a find shortcut
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var node, i, elems,
-					elem = context.getElementById( id );
-
-				if ( elem ) {
-
-					// Verify the id attribute
-					node = elem.getAttributeNode( "id" );
-					if ( node && node.value === id ) {
-						return [ elem ];
-					}
-
-					// Fall back on getElementsByName
-					elems = context.getElementsByName( id );
-					i = 0;
-					while ( ( elem = elems[ i++ ] ) ) {
-						node = elem.getAttributeNode( "id" );
-						if ( node && node.value === id ) {
-							return [ elem ];
-						}
-					}
-				}
-
-				return [];
-			}
-		};
-	}
-
-	// Tag
-	Expr.find[ "TAG" ] = support.getElementsByTagName ?
-		function( tag, context ) {
-			if ( typeof context.getElementsByTagName !== "undefined" ) {
-				return context.getElementsByTagName( tag );
-
-			// DocumentFragment nodes don't have gEBTN
-			} else if ( support.qsa ) {
-				return context.querySelectorAll( tag );
-			}
-		} :
-
-		function( tag, context ) {
-			var elem,
-				tmp = [],
-				i = 0,
-
-				// By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too
-				results = context.getElementsByTagName( tag );
-
-			// Filter out possible comments
-			if ( tag === "*" ) {
-				while ( ( elem = results[ i++ ] ) ) {
-					if ( elem.nodeType === 1 ) {
-						tmp.push( elem );
-					}
-				}
-
-				return tmp;
-			}
-			return results;
-		};
-
-	// Class
-	Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) {
-		if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) {
-			return context.getElementsByClassName( className );
-		}
-	};
-
-	/* QSA/matchesSelector
-	---------------------------------------------------------------------- */
-
-	// QSA and matchesSelector support
-
-	// matchesSelector(:active) reports false when true (IE9/Opera 11.5)
-	rbuggyMatches = [];
-
-	// qSa(:focus) reports false when true (Chrome 21)
-	// We allow this because of a bug in IE8/9 that throws an error
-	// whenever `document.activeElement` is accessed on an iframe
-	// So, we allow :focus to pass through QSA all the time to avoid the IE error
-	// See https://bugs.jquery.com/ticket/13378
-	rbuggyQSA = [];
-
-	if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) {
-
-		// Build QSA regex
-		// Regex strategy adopted from Diego Perini
-		assert( function( el ) {
-
-			var input;
-
-			// Select is set to empty string on purpose
-			// This is to test IE's treatment of not explicitly
-			// setting a boolean content attribute,
-			// since its presence should be enough
-			// https://bugs.jquery.com/ticket/12359
-			docElem.appendChild( el ).innerHTML = "<a id='" + expando + "'></a>" +
-				"<select id='" + expando + "-\r\\' msallowcapture=''>" +
-				"<option selected=''></option></select>";
-
-			// Support: IE8, Opera 11-12.16
-			// Nothing should be selected when empty strings follow ^= or $= or *=
-			// The test attribute must be unknown in Opera but "safe" for WinRT
-			// https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section
-			if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) {
-				rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" );
-			}
-
-			// Support: IE8
-			// Boolean attributes and "value" are not treated correctly
-			if ( !el.querySelectorAll( "[selected]" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" );
-			}
-
-			// Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+
-			if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) {
-				rbuggyQSA.push( "~=" );
-			}
-
-			// Support: IE 11+, Edge 15 - 18+
-			// IE 11/Edge don't find elements on a `[name='']` query in some cases.
-			// Adding a temporary attribute to the document before the selection works
-			// around the issue.
-			// Interestingly, IE 10 & older don't seem to have the issue.
-			input = document.createElement( "input" );
-			input.setAttribute( "name", "" );
-			el.appendChild( input );
-			if ( !el.querySelectorAll( "[name='']" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" +
-					whitespace + "*(?:''|\"\")" );
-			}
-
-			// Webkit/Opera - :checked should return selected option elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			// IE8 throws error here and will not see later tests
-			if ( !el.querySelectorAll( ":checked" ).length ) {
-				rbuggyQSA.push( ":checked" );
-			}
-
-			// Support: Safari 8+, iOS 8+
-			// https://bugs.webkit.org/show_bug.cgi?id=136851
-			// In-page `selector#id sibling-combinator selector` fails
-			if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) {
-				rbuggyQSA.push( ".#.+[+~]" );
-			}
-
-			// Support: Firefox <=3.6 - 5 only
-			// Old Firefox doesn't throw on a badly-escaped identifier.
-			el.querySelectorAll( "\\\f" );
-			rbuggyQSA.push( "[\\r\\n\\f]" );
-		} );
-
-		assert( function( el ) {
-			el.innerHTML = "<a href='' disabled='disabled'></a>" +
-				"<select disabled='disabled'><option/></select>";
-
-			// Support: Windows 8 Native Apps
-			// The type and name attributes are restricted during .innerHTML assignment
-			var input = document.createElement( "input" );
-			input.setAttribute( "type", "hidden" );
-			el.appendChild( input ).setAttribute( "name", "D" );
-
-			// Support: IE8
-			// Enforce case-sensitivity of name attribute
-			if ( el.querySelectorAll( "[name=d]" ).length ) {
-				rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" );
-			}
-
-			// FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled)
-			// IE8 throws error here and will not see later tests
-			if ( el.querySelectorAll( ":enabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: IE9-11+
-			// IE's :disabled selector does not pick up the children of disabled fieldsets
-			docElem.appendChild( el ).disabled = true;
-			if ( el.querySelectorAll( ":disabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: Opera 10 - 11 only
-			// Opera 10-11 does not throw on post-comma invalid pseudos
-			el.querySelectorAll( "*,:x" );
-			rbuggyQSA.push( ",.*:" );
-		} );
-	}
-
-	if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches ||
-		docElem.webkitMatchesSelector ||
-		docElem.mozMatchesSelector ||
-		docElem.oMatchesSelector ||
-		docElem.msMatchesSelector ) ) ) ) {
-
-		assert( function( el ) {
-
-			// Check to see if it's possible to do matchesSelector
-			// on a disconnected node (IE 9)
-			support.disconnectedMatch = matches.call( el, "*" );
-
-			// This should fail with an exception
-			// Gecko does not error, returns false instead
-			matches.call( el, "[s!='']:x" );
-			rbuggyMatches.push( "!=", pseudos );
-		} );
-	}
-
-	rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) );
-	rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) );
-
-	/* Contains
-	---------------------------------------------------------------------- */
-	hasCompare = rnative.test( docElem.compareDocumentPosition );
-
-	// Element contains another
-	// Purposefully self-exclusive
-	// As in, an element does not contain itself
-	contains = hasCompare || rnative.test( docElem.contains ) ?
-		function( a, b ) {
-			var adown = a.nodeType === 9 ? a.documentElement : a,
-				bup = b && b.parentNode;
-			return a === bup || !!( bup && bup.nodeType === 1 && (
-				adown.contains ?
-					adown.contains( bup ) :
-					a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16
-			) );
-		} :
-		function( a, b ) {
-			if ( b ) {
-				while ( ( b = b.parentNode ) ) {
-					if ( b === a ) {
-						return true;
-					}
-				}
-			}
-			return false;
-		};
-
-	/* Sorting
-	---------------------------------------------------------------------- */
-
-	// Document order sorting
-	sortOrder = hasCompare ?
-	function( a, b ) {
-
-		// Flag for duplicate removal
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		// Sort on method existence if only one input has compareDocumentPosition
-		var compare = !a.compareDocumentPosition - !b.compareDocumentPosition;
-		if ( compare ) {
-			return compare;
-		}
-
-		// Calculate position if both inputs belong to the same document
-		// Support: IE 11+, Edge 17 - 18+
-		// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-		// two documents; shallow comparisons work.
-		// eslint-disable-next-line eqeqeq
-		compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ?
-			a.compareDocumentPosition( b ) :
-
-			// Otherwise we know they are disconnected
-			1;
-
-		// Disconnected nodes
-		if ( compare & 1 ||
-			( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) {
-
-			// Choose the first element that is related to our preferred document
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( a == document || a.ownerDocument == preferredDoc &&
-				contains( preferredDoc, a ) ) {
-				return -1;
-			}
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( b == document || b.ownerDocument == preferredDoc &&
-				contains( preferredDoc, b ) ) {
-				return 1;
-			}
-
-			// Maintain original order
-			return sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-		}
-
-		return compare & 4 ? -1 : 1;
-	} :
-	function( a, b ) {
-
-		// Exit early if the nodes are identical
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		var cur,
-			i = 0,
-			aup = a.parentNode,
-			bup = b.parentNode,
-			ap = [ a ],
-			bp = [ b ];
-
-		// Parentless nodes are either documents or disconnected
-		if ( !aup || !bup ) {
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			return a == document ? -1 :
-				b == document ? 1 :
-				/* eslint-enable eqeqeq */
-				aup ? -1 :
-				bup ? 1 :
-				sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-
-		// If the nodes are siblings, we can do a quick check
-		} else if ( aup === bup ) {
-			return siblingCheck( a, b );
-		}
-
-		// Otherwise we need full lists of their ancestors for comparison
-		cur = a;
-		while ( ( cur = cur.parentNode ) ) {
-			ap.unshift( cur );
-		}
-		cur = b;
-		while ( ( cur = cur.parentNode ) ) {
-			bp.unshift( cur );
-		}
-
-		// Walk down the tree looking for a discrepancy
-		while ( ap[ i ] === bp[ i ] ) {
-			i++;
-		}
-
-		return i ?
-
-			// Do a sibling check if the nodes have a common ancestor
-			siblingCheck( ap[ i ], bp[ i ] ) :
-
-			// Otherwise nodes in our document sort first
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			ap[ i ] == preferredDoc ? -1 :
-			bp[ i ] == preferredDoc ? 1 :
-			/* eslint-enable eqeqeq */
-			0;
-	};
-
-	return document;
-};
-
-Sizzle.matches = function( expr, elements ) {
-	return Sizzle( expr, null, null, elements );
-};
-
-Sizzle.matchesSelector = function( elem, expr ) {
-	setDocument( elem );
-
-	if ( support.matchesSelector && documentIsHTML &&
-		!nonnativeSelectorCache[ expr + " " ] &&
-		( !rbuggyMatches || !rbuggyMatches.test( expr ) ) &&
-		( !rbuggyQSA     || !rbuggyQSA.test( expr ) ) ) {
-
-		try {
-			var ret = matches.call( elem, expr );
-
-			// IE 9's matchesSelector returns false on disconnected nodes
-			if ( ret || support.disconnectedMatch ||
-
-				// As well, disconnected nodes are said to be in a document
-				// fragment in IE 9
-				elem.document && elem.document.nodeType !== 11 ) {
-				return ret;
-			}
-		} catch ( e ) {
-			nonnativeSelectorCache( expr, true );
-		}
-	}
-
-	return Sizzle( expr, document, null, [ elem ] ).length > 0;
-};
-
-Sizzle.contains = function( context, elem ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( context.ownerDocument || context ) != document ) {
-		setDocument( context );
-	}
-	return contains( context, elem );
-};
-
-Sizzle.attr = function( elem, name ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( elem.ownerDocument || elem ) != document ) {
-		setDocument( elem );
-	}
-
-	var fn = Expr.attrHandle[ name.toLowerCase() ],
-
-		// Don't get fooled by Object.prototype properties (jQuery #13807)
-		val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ?
-			fn( elem, name, !documentIsHTML ) :
-			undefined;
-
-	return val !== undefined ?
-		val :
-		support.attributes || !documentIsHTML ?
-			elem.getAttribute( name ) :
-			( val = elem.getAttributeNode( name ) ) && val.specified ?
-				val.value :
-				null;
-};
-
-Sizzle.escape = function( sel ) {
-	return ( sel + "" ).replace( rcssescape, fcssescape );
-};
-
-Sizzle.error = function( msg ) {
-	throw new Error( "Syntax error, unrecognized expression: " + msg );
-};
-
-/**
- * Document sorting and removing duplicates
- * @param {ArrayLike} results
- */
-Sizzle.uniqueSort = function( results ) {
-	var elem,
-		duplicates = [],
-		j = 0,
-		i = 0;
-
-	// Unless we *know* we can detect duplicates, assume their presence
-	hasDuplicate = !support.detectDuplicates;
-	sortInput = !support.sortStable && results.slice( 0 );
-	results.sort( sortOrder );
-
-	if ( hasDuplicate ) {
-		while ( ( elem = results[ i++ ] ) ) {
-			if ( elem === results[ i ] ) {
-				j = duplicates.push( i );
-			}
-		}
-		while ( j-- ) {
-			results.splice( duplicates[ j ], 1 );
-		}
-	}
-
-	// Clear input after sorting to release objects
-	// See https://github.com/jquery/sizzle/pull/225
-	sortInput = null;
-
-	return results;
-};
-
-/**
- * Utility function for retrieving the text value of an array of DOM nodes
- * @param {Array|Element} elem
- */
-getText = Sizzle.getText = function( elem ) {
-	var node,
-		ret = "",
-		i = 0,
-		nodeType = elem.nodeType;
-
-	if ( !nodeType ) {
-
-		// If no nodeType, this is expected to be an array
-		while ( ( node = elem[ i++ ] ) ) {
-
-			// Do not traverse comment nodes
-			ret += getText( node );
-		}
-	} else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) {
-
-		// Use textContent for elements
-		// innerText usage removed for consistency of new lines (jQuery #11153)
-		if ( typeof elem.textContent === "string" ) {
-			return elem.textContent;
-		} else {
-
-			// Traverse its children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				ret += getText( elem );
-			}
-		}
-	} else if ( nodeType === 3 || nodeType === 4 ) {
-		return elem.nodeValue;
-	}
-
-	// Do not include comment or processing instruction nodes
-
-	return ret;
-};
-
-Expr = Sizzle.selectors = {
-
-	// Can be adjusted by the user
-	cacheLength: 50,
-
-	createPseudo: markFunction,
-
-	match: matchExpr,
-
-	attrHandle: {},
-
-	find: {},
-
-	relative: {
-		">": { dir: "parentNode", first: true },
-		" ": { dir: "parentNode" },
-		"+": { dir: "previousSibling", first: true },
-		"~": { dir: "previousSibling" }
-	},
-
-	preFilter: {
-		"ATTR": function( match ) {
-			match[ 1 ] = match[ 1 ].replace( runescape, funescape );
-
-			// Move the given value to match[3] whether quoted or unquoted
-			match[ 3 ] = ( match[ 3 ] || match[ 4 ] ||
-				match[ 5 ] || "" ).replace( runescape, funescape );
-
-			if ( match[ 2 ] === "~=" ) {
-				match[ 3 ] = " " + match[ 3 ] + " ";
-			}
-
-			return match.slice( 0, 4 );
-		},
-
-		"CHILD": function( match ) {
-
-			/* matches from matchExpr["CHILD"]
-				1 type (only|nth|...)
-				2 what (child|of-type)
-				3 argument (even|odd|\d*|\d*n([+-]\d+)?|...)
-				4 xn-component of xn+y argument ([+-]?\d*n|)
-				5 sign of xn-component
-				6 x of xn-component
-				7 sign of y-component
-				8 y of y-component
-			*/
-			match[ 1 ] = match[ 1 ].toLowerCase();
-
-			if ( match[ 1 ].slice( 0, 3 ) === "nth" ) {
-
-				// nth-* requires argument
-				if ( !match[ 3 ] ) {
-					Sizzle.error( match[ 0 ] );
-				}
-
-				// numeric x and y parameters for Expr.filter.CHILD
-				// remember that false/true cast respectively to 0/1
-				match[ 4 ] = +( match[ 4 ] ?
-					match[ 5 ] + ( match[ 6 ] || 1 ) :
-					2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) );
-				match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" );
-
-				// other types prohibit arguments
-			} else if ( match[ 3 ] ) {
-				Sizzle.error( match[ 0 ] );
-			}
-
-			return match;
-		},
-
-		"PSEUDO": function( match ) {
-			var excess,
-				unquoted = !match[ 6 ] && match[ 2 ];
-
-			if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) {
-				return null;
-			}
-
-			// Accept quoted arguments as-is
-			if ( match[ 3 ] ) {
-				match[ 2 ] = match[ 4 ] || match[ 5 ] || "";
-
-			// Strip excess characters from unquoted arguments
-			} else if ( unquoted && rpseudo.test( unquoted ) &&
-
-				// Get excess from tokenize (recursively)
-				( excess = tokenize( unquoted, true ) ) &&
-
-				// advance to the next closing parenthesis
-				( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) {
-
-				// excess is a negative index
-				match[ 0 ] = match[ 0 ].slice( 0, excess );
-				match[ 2 ] = unquoted.slice( 0, excess );
-			}
-
-			// Return only captures needed by the pseudo filter method (type and argument)
-			return match.slice( 0, 3 );
-		}
-	},
-
-	filter: {
-
-		"TAG": function( nodeNameSelector ) {
-			var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase();
-			return nodeNameSelector === "*" ?
-				function() {
-					return true;
-				} :
-				function( elem ) {
-					return elem.nodeName && elem.nodeName.toLowerCase() === nodeName;
-				};
-		},
-
-		"CLASS": function( className ) {
-			var pattern = classCache[ className + " " ];
-
-			return pattern ||
-				( pattern = new RegExp( "(^|" + whitespace +
-					")" + className + "(" + whitespace + "|$)" ) ) && classCache(
-						className, function( elem ) {
-							return pattern.test(
-								typeof elem.className === "string" && elem.className ||
-								typeof elem.getAttribute !== "undefined" &&
-									elem.getAttribute( "class" ) ||
-								""
-							);
-				} );
-		},
-
-		"ATTR": function( name, operator, check ) {
-			return function( elem ) {
-				var result = Sizzle.attr( elem, name );
-
-				if ( result == null ) {
-					return operator === "!=";
-				}
-				if ( !operator ) {
-					return true;
-				}
-
-				result += "";
-
-				/* eslint-disable max-len */
-
-				return operator === "=" ? result === check :
-					operator === "!=" ? result !== check :
-					operator === "^=" ? check && result.indexOf( check ) === 0 :
-					operator === "*=" ? check && result.indexOf( check ) > -1 :
-					operator === "$=" ? check && result.slice( -check.length ) === check :
-					operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 :
-					operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" :
-					false;
-				/* eslint-enable max-len */
-
-			};
-		},
-
-		"CHILD": function( type, what, _argument, first, last ) {
-			var simple = type.slice( 0, 3 ) !== "nth",
-				forward = type.slice( -4 ) !== "last",
-				ofType = what === "of-type";
-
-			return first === 1 && last === 0 ?
-
-				// Shortcut for :nth-*(n)
-				function( elem ) {
-					return !!elem.parentNode;
-				} :
-
-				function( elem, _context, xml ) {
-					var cache, uniqueCache, outerCache, node, nodeIndex, start,
-						dir = simple !== forward ? "nextSibling" : "previousSibling",
-						parent = elem.parentNode,
-						name = ofType && elem.nodeName.toLowerCase(),
-						useCache = !xml && !ofType,
-						diff = false;
-
-					if ( parent ) {
-
-						// :(first|last|only)-(child|of-type)
-						if ( simple ) {
-							while ( dir ) {
-								node = elem;
-								while ( ( node = node[ dir ] ) ) {
-									if ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) {
-
-										return false;
-									}
-								}
-
-								// Reverse direction for :only-* (if we haven't yet done so)
-								start = dir = type === "only" && !start && "nextSibling";
-							}
-							return true;
-						}
-
-						start = [ forward ? parent.firstChild : parent.lastChild ];
-
-						// non-xml :nth-child(...) stores cache data on `parent`
-						if ( forward && useCache ) {
-
-							// Seek `elem` from a previously-cached index
-
-							// ...in a gzip-friendly way
-							node = parent;
-							outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-							// Support: IE <9 only
-							// Defend against cloned attroperties (jQuery gh-1709)
-							uniqueCache = outerCache[ node.uniqueID ] ||
-								( outerCache[ node.uniqueID ] = {} );
-
-							cache = uniqueCache[ type ] || [];
-							nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-							diff = nodeIndex && cache[ 2 ];
-							node = nodeIndex && parent.childNodes[ nodeIndex ];
-
-							while ( ( node = ++nodeIndex && node && node[ dir ] ||
-
-								// Fallback to seeking `elem` from the start
-								( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-								// When found, cache indexes on `parent` and break
-								if ( node.nodeType === 1 && ++diff && node === elem ) {
-									uniqueCache[ type ] = [ dirruns, nodeIndex, diff ];
-									break;
-								}
-							}
-
-						} else {
-
-							// Use previously-cached element index if available
-							if ( useCache ) {
-
-								// ...in a gzip-friendly way
-								node = elem;
-								outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-								// Support: IE <9 only
-								// Defend against cloned attroperties (jQuery gh-1709)
-								uniqueCache = outerCache[ node.uniqueID ] ||
-									( outerCache[ node.uniqueID ] = {} );
-
-								cache = uniqueCache[ type ] || [];
-								nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-								diff = nodeIndex;
-							}
-
-							// xml :nth-child(...)
-							// or :nth-last-child(...) or :nth(-last)?-of-type(...)
-							if ( diff === false ) {
-
-								// Use the same loop as above to seek `elem` from the start
-								while ( ( node = ++nodeIndex && node && node[ dir ] ||
-									( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-									if ( ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) &&
-										++diff ) {
-
-										// Cache the index of each encountered element
-										if ( useCache ) {
-											outerCache = node[ expando ] ||
-												( node[ expando ] = {} );
-
-											// Support: IE <9 only
-											// Defend against cloned attroperties (jQuery gh-1709)
-											uniqueCache = outerCache[ node.uniqueID ] ||
-												( outerCache[ node.uniqueID ] = {} );
-
-											uniqueCache[ type ] = [ dirruns, diff ];
-										}
-
-										if ( node === elem ) {
-											break;
-										}
-									}
-								}
-							}
-						}
-
-						// Incorporate the offset, then check against cycle size
-						diff -= last;
-						return diff === first || ( diff % first === 0 && diff / first >= 0 );
-					}
-				};
-		},
-
-		"PSEUDO": function( pseudo, argument ) {
-
-			// pseudo-class names are case-insensitive
-			// http://www.w3.org/TR/selectors/#pseudo-classes
-			// Prioritize by case sensitivity in case custom pseudos are added with uppercase letters
-			// Remember that setFilters inherits from pseudos
-			var args,
-				fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] ||
-					Sizzle.error( "unsupported pseudo: " + pseudo );
-
-			// The user may use createPseudo to indicate that
-			// arguments are needed to create the filter function
-			// just as Sizzle does
-			if ( fn[ expando ] ) {
-				return fn( argument );
-			}
-
-			// But maintain support for old signatures
-			if ( fn.length > 1 ) {
-				args = [ pseudo, pseudo, "", argument ];
-				return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ?
-					markFunction( function( seed, matches ) {
-						var idx,
-							matched = fn( seed, argument ),
-							i = matched.length;
-						while ( i-- ) {
-							idx = indexOf( seed, matched[ i ] );
-							seed[ idx ] = !( matches[ idx ] = matched[ i ] );
-						}
-					} ) :
-					function( elem ) {
-						return fn( elem, 0, args );
-					};
-			}
-
-			return fn;
-		}
-	},
-
-	pseudos: {
-
-		// Potentially complex pseudos
-		"not": markFunction( function( selector ) {
-
-			// Trim the selector passed to compile
-			// to avoid treating leading and trailing
-			// spaces as combinators
-			var input = [],
-				results = [],
-				matcher = compile( selector.replace( rtrim, "$1" ) );
-
-			return matcher[ expando ] ?
-				markFunction( function( seed, matches, _context, xml ) {
-					var elem,
-						unmatched = matcher( seed, null, xml, [] ),
-						i = seed.length;
-
-					// Match elements unmatched by `matcher`
-					while ( i-- ) {
-						if ( ( elem = unmatched[ i ] ) ) {
-							seed[ i ] = !( matches[ i ] = elem );
-						}
-					}
-				} ) :
-				function( elem, _context, xml ) {
-					input[ 0 ] = elem;
-					matcher( input, null, xml, results );
-
-					// Don't keep the element (issue #299)
-					input[ 0 ] = null;
-					return !results.pop();
-				};
-		} ),
-
-		"has": markFunction( function( selector ) {
-			return function( elem ) {
-				return Sizzle( selector, elem ).length > 0;
-			};
-		} ),
-
-		"contains": markFunction( function( text ) {
-			text = text.replace( runescape, funescape );
-			return function( elem ) {
-				return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1;
-			};
-		} ),
-
-		// "Whether an element is represented by a :lang() selector
-		// is based solely on the element's language value
-		// being equal to the identifier C,
-		// or beginning with the identifier C immediately followed by "-".
-		// The matching of C against the element's language value is performed case-insensitively.
-		// The identifier C does not have to be a valid language name."
-		// http://www.w3.org/TR/selectors/#lang-pseudo
-		"lang": markFunction( function( lang ) {
-
-			// lang value must be a valid identifier
-			if ( !ridentifier.test( lang || "" ) ) {
-				Sizzle.error( "unsupported lang: " + lang );
-			}
-			lang = lang.replace( runescape, funescape ).toLowerCase();
-			return function( elem ) {
-				var elemLang;
-				do {
-					if ( ( elemLang = documentIsHTML ?
-						elem.lang :
-						elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) {
-
-						elemLang = elemLang.toLowerCase();
-						return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0;
-					}
-				} while ( ( elem = elem.parentNode ) && elem.nodeType === 1 );
-				return false;
-			};
-		} ),
-
-		// Miscellaneous
-		"target": function( elem ) {
-			var hash = window.location && window.location.hash;
-			return hash && hash.slice( 1 ) === elem.id;
-		},
-
-		"root": function( elem ) {
-			return elem === docElem;
-		},
-
-		"focus": function( elem ) {
-			return elem === document.activeElement &&
-				( !document.hasFocus || document.hasFocus() ) &&
-				!!( elem.type || elem.href || ~elem.tabIndex );
-		},
-
-		// Boolean properties
-		"enabled": createDisabledPseudo( false ),
-		"disabled": createDisabledPseudo( true ),
-
-		"checked": function( elem ) {
-
-			// In CSS3, :checked should return both checked and selected elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			var nodeName = elem.nodeName.toLowerCase();
-			return ( nodeName === "input" && !!elem.checked ) ||
-				( nodeName === "option" && !!elem.selected );
-		},
-
-		"selected": function( elem ) {
-
-			// Accessing this property makes selected-by-default
-			// options in Safari work properly
-			if ( elem.parentNode ) {
-				// eslint-disable-next-line no-unused-expressions
-				elem.parentNode.selectedIndex;
-			}
-
-			return elem.selected === true;
-		},
-
-		// Contents
-		"empty": function( elem ) {
-
-			// http://www.w3.org/TR/selectors/#empty-pseudo
-			// :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5),
-			//   but not by others (comment: 8; processing instruction: 7; etc.)
-			// nodeType < 6 works because attributes (2) do not appear as children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				if ( elem.nodeType < 6 ) {
-					return false;
-				}
-			}
-			return true;
-		},
-
-		"parent": function( elem ) {
-			return !Expr.pseudos[ "empty" ]( elem );
-		},
-
-		// Element/input types
-		"header": function( elem ) {
-			return rheader.test( elem.nodeName );
-		},
-
-		"input": function( elem ) {
-			return rinputs.test( elem.nodeName );
-		},
-
-		"button": function( elem ) {
-			var name = elem.nodeName.toLowerCase();
-			return name === "input" && elem.type === "button" || name === "button";
-		},
-
-		"text": function( elem ) {
-			var attr;
-			return elem.nodeName.toLowerCase() === "input" &&
-				elem.type === "text" &&
-
-				// Support: IE<8
-				// New HTML5 attribute values (e.g., "search") appear with elem.type === "text"
-				( ( attr = elem.getAttribute( "type" ) ) == null ||
-					attr.toLowerCase() === "text" );
-		},
-
-		// Position-in-collection
-		"first": createPositionalPseudo( function() {
-			return [ 0 ];
-		} ),
-
-		"last": createPositionalPseudo( function( _matchIndexes, length ) {
-			return [ length - 1 ];
-		} ),
-
-		"eq": createPositionalPseudo( function( _matchIndexes, length, argument ) {
-			return [ argument < 0 ? argument + length : argument ];
-		} ),
-
-		"even": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 0;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"odd": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 1;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"lt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ?
-				argument + length :
-				argument > length ?
-					length :
-					argument;
-			for ( ; --i >= 0; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"gt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ? argument + length : argument;
-			for ( ; ++i < length; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} )
-	}
-};
-
-Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ];
-
-// Add button/input type pseudos
-for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) {
-	Expr.pseudos[ i ] = createInputPseudo( i );
-}
-for ( i in { submit: true, reset: true } ) {
-	Expr.pseudos[ i ] = createButtonPseudo( i );
-}
-
-// Easy API for creating new setFilters
-function setFilters() {}
-setFilters.prototype = Expr.filters = Expr.pseudos;
-Expr.setFilters = new setFilters();
-
-tokenize = Sizzle.tokenize = function( selector, parseOnly ) {
-	var matched, match, tokens, type,
-		soFar, groups, preFilters,
-		cached = tokenCache[ selector + " " ];
-
-	if ( cached ) {
-		return parseOnly ? 0 : cached.slice( 0 );
-	}
-
-	soFar = selector;
-	groups = [];
-	preFilters = Expr.preFilter;
-
-	while ( soFar ) {
-
-		// Comma and first run
-		if ( !matched || ( match = rcomma.exec( soFar ) ) ) {
-			if ( match ) {
-
-				// Don't consume trailing commas as valid
-				soFar = soFar.slice( match[ 0 ].length ) || soFar;
-			}
-			groups.push( ( tokens = [] ) );
-		}
-
-		matched = false;
-
-		// Combinators
-		if ( ( match = rcombinators.exec( soFar ) ) ) {
-			matched = match.shift();
-			tokens.push( {
-				value: matched,
-
-				// Cast descendant combinators to space
-				type: match[ 0 ].replace( rtrim, " " )
-			} );
-			soFar = soFar.slice( matched.length );
-		}
-
-		// Filters
-		for ( type in Expr.filter ) {
-			if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] ||
-				( match = preFilters[ type ]( match ) ) ) ) {
-				matched = match.shift();
-				tokens.push( {
-					value: matched,
-					type: type,
-					matches: match
-				} );
-				soFar = soFar.slice( matched.length );
-			}
-		}
-
-		if ( !matched ) {
-			break;
-		}
-	}
-
-	// Return the length of the invalid excess
-	// if we're just parsing
-	// Otherwise, throw an error or return tokens
-	return parseOnly ?
-		soFar.length :
-		soFar ?
-			Sizzle.error( selector ) :
-
-			// Cache the tokens
-			tokenCache( selector, groups ).slice( 0 );
-};
-
-function toSelector( tokens ) {
-	var i = 0,
-		len = tokens.length,
-		selector = "";
-	for ( ; i < len; i++ ) {
-		selector += tokens[ i ].value;
-	}
-	return selector;
-}
-
-function addCombinator( matcher, combinator, base ) {
-	var dir = combinator.dir,
-		skip = combinator.next,
-		key = skip || dir,
-		checkNonElements = base && key === "parentNode",
-		doneName = done++;
-
-	return combinator.first ?
-
-		// Check against closest ancestor/preceding element
-		function( elem, context, xml ) {
-			while ( ( elem = elem[ dir ] ) ) {
-				if ( elem.nodeType === 1 || checkNonElements ) {
-					return matcher( elem, context, xml );
-				}
-			}
-			return false;
-		} :
-
-		// Check against all ancestor/preceding elements
-		function( elem, context, xml ) {
-			var oldCache, uniqueCache, outerCache,
-				newCache = [ dirruns, doneName ];
-
-			// We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching
-			if ( xml ) {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						if ( matcher( elem, context, xml ) ) {
-							return true;
-						}
-					}
-				}
-			} else {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						outerCache = elem[ expando ] || ( elem[ expando ] = {} );
-
-						// Support: IE <9 only
-						// Defend against cloned attroperties (jQuery gh-1709)
-						uniqueCache = outerCache[ elem.uniqueID ] ||
-							( outerCache[ elem.uniqueID ] = {} );
-
-						if ( skip && skip === elem.nodeName.toLowerCase() ) {
-							elem = elem[ dir ] || elem;
-						} else if ( ( oldCache = uniqueCache[ key ] ) &&
-							oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) {
-
-							// Assign to newCache so results back-propagate to previous elements
-							return ( newCache[ 2 ] = oldCache[ 2 ] );
-						} else {
-
-							// Reuse newcache so results back-propagate to previous elements
-							uniqueCache[ key ] = newCache;
-
-							// A match means we're done; a fail means we have to keep checking
-							if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) {
-								return true;
-							}
-						}
-					}
-				}
-			}
-			return false;
-		};
-}
-
-function elementMatcher( matchers ) {
-	return matchers.length > 1 ?
-		function( elem, context, xml ) {
-			var i = matchers.length;
-			while ( i-- ) {
-				if ( !matchers[ i ]( elem, context, xml ) ) {
-					return false;
-				}
-			}
-			return true;
-		} :
-		matchers[ 0 ];
-}
-
-function multipleContexts( selector, contexts, results ) {
-	var i = 0,
-		len = contexts.length;
-	for ( ; i < len; i++ ) {
-		Sizzle( selector, contexts[ i ], results );
-	}
-	return results;
-}
-
-function condense( unmatched, map, filter, context, xml ) {
-	var elem,
-		newUnmatched = [],
-		i = 0,
-		len = unmatched.length,
-		mapped = map != null;
-
-	for ( ; i < len; i++ ) {
-		if ( ( elem = unmatched[ i ] ) ) {
-			if ( !filter || filter( elem, context, xml ) ) {
-				newUnmatched.push( elem );
-				if ( mapped ) {
-					map.push( i );
-				}
-			}
-		}
-	}
-
-	return newUnmatched;
-}
-
-function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) {
-	if ( postFilter && !postFilter[ expando ] ) {
-		postFilter = setMatcher( postFilter );
-	}
-	if ( postFinder && !postFinder[ expando ] ) {
-		postFinder = setMatcher( postFinder, postSelector );
-	}
-	return markFunction( function( seed, results, context, xml ) {
-		var temp, i, elem,
-			preMap = [],
-			postMap = [],
-			preexisting = results.length,
-
-			// Get initial elements from seed or context
-			elems = seed || multipleContexts(
-				selector || "*",
-				context.nodeType ? [ context ] : context,
-				[]
-			),
-
-			// Prefilter to get matcher input, preserving a map for seed-results synchronization
-			matcherIn = preFilter && ( seed || !selector ) ?
-				condense( elems, preMap, preFilter, context, xml ) :
-				elems,
-
-			matcherOut = matcher ?
-
-				// If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results,
-				postFinder || ( seed ? preFilter : preexisting || postFilter ) ?
-
-					// ...intermediate processing is necessary
-					[] :
-
-					// ...otherwise use results directly
-					results :
-				matcherIn;
-
-		// Find primary matches
-		if ( matcher ) {
-			matcher( matcherIn, matcherOut, context, xml );
-		}
-
-		// Apply postFilter
-		if ( postFilter ) {
-			temp = condense( matcherOut, postMap );
-			postFilter( temp, [], context, xml );
-
-			// Un-match failing elements by moving them back to matcherIn
-			i = temp.length;
-			while ( i-- ) {
-				if ( ( elem = temp[ i ] ) ) {
-					matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem );
-				}
-			}
-		}
-
-		if ( seed ) {
-			if ( postFinder || preFilter ) {
-				if ( postFinder ) {
-
-					// Get the final matcherOut by condensing this intermediate into postFinder contexts
-					temp = [];
-					i = matcherOut.length;
-					while ( i-- ) {
-						if ( ( elem = matcherOut[ i ] ) ) {
-
-							// Restore matcherIn since elem is not yet a final match
-							temp.push( ( matcherIn[ i ] = elem ) );
-						}
-					}
-					postFinder( null, ( matcherOut = [] ), temp, xml );
-				}
-
-				// Move matched elements from seed to results to keep them synchronized
-				i = matcherOut.length;
-				while ( i-- ) {
-					if ( ( elem = matcherOut[ i ] ) &&
-						( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) {
-
-						seed[ temp ] = !( results[ temp ] = elem );
-					}
-				}
-			}
-
-		// Add elements to results, through postFinder if defined
-		} else {
-			matcherOut = condense(
-				matcherOut === results ?
-					matcherOut.splice( preexisting, matcherOut.length ) :
-					matcherOut
-			);
-			if ( postFinder ) {
-				postFinder( null, results, matcherOut, xml );
-			} else {
-				push.apply( results, matcherOut );
-			}
-		}
-	} );
-}
-
-function matcherFromTokens( tokens ) {
-	var checkContext, matcher, j,
-		len = tokens.length,
-		leadingRelative = Expr.relative[ tokens[ 0 ].type ],
-		implicitRelative = leadingRelative || Expr.relative[ " " ],
-		i = leadingRelative ? 1 : 0,
-
-		// The foundational matcher ensures that elements are reachable from top-level context(s)
-		matchContext = addCombinator( function( elem ) {
-			return elem === checkContext;
-		}, implicitRelative, true ),
-		matchAnyContext = addCombinator( function( elem ) {
-			return indexOf( checkContext, elem ) > -1;
-		}, implicitRelative, true ),
-		matchers = [ function( elem, context, xml ) {
-			var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || (
-				( checkContext = context ).nodeType ?
-					matchContext( elem, context, xml ) :
-					matchAnyContext( elem, context, xml ) );
-
-			// Avoid hanging onto element (issue #299)
-			checkContext = null;
-			return ret;
-		} ];
-
-	for ( ; i < len; i++ ) {
-		if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) {
-			matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ];
-		} else {
-			matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches );
-
-			// Return special upon seeing a positional matcher
-			if ( matcher[ expando ] ) {
-
-				// Find the next relative operator (if any) for proper handling
-				j = ++i;
-				for ( ; j < len; j++ ) {
-					if ( Expr.relative[ tokens[ j ].type ] ) {
-						break;
-					}
-				}
-				return setMatcher(
-					i > 1 && elementMatcher( matchers ),
-					i > 1 && toSelector(
-
-					// If the preceding token was a descendant combinator, insert an implicit any-element `*`
-					tokens
-						.slice( 0, i - 1 )
-						.concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } )
-					).replace( rtrim, "$1" ),
-					matcher,
-					i < j && matcherFromTokens( tokens.slice( i, j ) ),
-					j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ),
-					j < len && toSelector( tokens )
-				);
-			}
-			matchers.push( matcher );
-		}
-	}
-
-	return elementMatcher( matchers );
-}
-
-function matcherFromGroupMatchers( elementMatchers, setMatchers ) {
-	var bySet = setMatchers.length > 0,
-		byElement = elementMatchers.length > 0,
-		superMatcher = function( seed, context, xml, results, outermost ) {
-			var elem, j, matcher,
-				matchedCount = 0,
-				i = "0",
-				unmatched = seed && [],
-				setMatched = [],
-				contextBackup = outermostContext,
-
-				// We must always have either seed elements or outermost context
-				elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ),
-
-				// Use integer dirruns iff this is the outermost matcher
-				dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ),
-				len = elems.length;
-
-			if ( outermost ) {
-
-				// Support: IE 11+, Edge 17 - 18+
-				// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-				// two documents; shallow comparisons work.
-				// eslint-disable-next-line eqeqeq
-				outermostContext = context == document || context || outermost;
-			}
-
-			// Add elements passing elementMatchers directly to results
-			// Support: IE<9, Safari
-			// Tolerate NodeList properties (IE: "length"; Safari: <number>) matching elements by id
-			for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) {
-				if ( byElement && elem ) {
-					j = 0;
-
-					// Support: IE 11+, Edge 17 - 18+
-					// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-					// two documents; shallow comparisons work.
-					// eslint-disable-next-line eqeqeq
-					if ( !context && elem.ownerDocument != document ) {
-						setDocument( elem );
-						xml = !documentIsHTML;
-					}
-					while ( ( matcher = elementMatchers[ j++ ] ) ) {
-						if ( matcher( elem, context || document, xml ) ) {
-							results.push( elem );
-							break;
-						}
-					}
-					if ( outermost ) {
-						dirruns = dirrunsUnique;
-					}
-				}
-
-				// Track unmatched elements for set filters
-				if ( bySet ) {
-
-					// They will have gone through all possible matchers
-					if ( ( elem = !matcher && elem ) ) {
-						matchedCount--;
-					}
-
-					// Lengthen the array for every element, matched or not
-					if ( seed ) {
-						unmatched.push( elem );
-					}
-				}
-			}
-
-			// `i` is now the count of elements visited above, and adding it to `matchedCount`
-			// makes the latter nonnegative.
-			matchedCount += i;
-
-			// Apply set filters to unmatched elements
-			// NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount`
-			// equals `i`), unless we didn't visit _any_ elements in the above loop because we have
-			// no element matchers and no seed.
-			// Incrementing an initially-string "0" `i` allows `i` to remain a string only in that
-			// case, which will result in a "00" `matchedCount` that differs from `i` but is also
-			// numerically zero.
-			if ( bySet && i !== matchedCount ) {
-				j = 0;
-				while ( ( matcher = setMatchers[ j++ ] ) ) {
-					matcher( unmatched, setMatched, context, xml );
-				}
-
-				if ( seed ) {
-
-					// Reintegrate element matches to eliminate the need for sorting
-					if ( matchedCount > 0 ) {
-						while ( i-- ) {
-							if ( !( unmatched[ i ] || setMatched[ i ] ) ) {
-								setMatched[ i ] = pop.call( results );
-							}
-						}
-					}
-
-					// Discard index placeholder values to get only actual matches
-					setMatched = condense( setMatched );
-				}
-
-				// Add matches to results
-				push.apply( results, setMatched );
-
-				// Seedless set matches succeeding multiple successful matchers stipulate sorting
-				if ( outermost && !seed && setMatched.length > 0 &&
-					( matchedCount + setMatchers.length ) > 1 ) {
-
-					Sizzle.uniqueSort( results );
-				}
-			}
-
-			// Override manipulation of globals by nested matchers
-			if ( outermost ) {
-				dirruns = dirrunsUnique;
-				outermostContext = contextBackup;
-			}
-
-			return unmatched;
-		};
-
-	return bySet ?
-		markFunction( superMatcher ) :
-		superMatcher;
-}
-
-compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) {
-	var i,
-		setMatchers = [],
-		elementMatchers = [],
-		cached = compilerCache[ selector + " " ];
-
-	if ( !cached ) {
-
-		// Generate a function of recursive functions that can be used to check each element
-		if ( !match ) {
-			match = tokenize( selector );
-		}
-		i = match.length;
-		while ( i-- ) {
-			cached = matcherFromTokens( match[ i ] );
-			if ( cached[ expando ] ) {
-				setMatchers.push( cached );
-			} else {
-				elementMatchers.push( cached );
-			}
-		}
-
-		// Cache the compiled function
-		cached = compilerCache(
-			selector,
-			matcherFromGroupMatchers( elementMatchers, setMatchers )
-		);
-
-		// Save selector and tokenization
-		cached.selector = selector;
-	}
-	return cached;
-};
-
-/**
- * A low-level selection function that works with Sizzle's compiled
- *  selector functions
- * @param {String|Function} selector A selector or a pre-compiled
- *  selector function built with Sizzle.compile
- * @param {Element} context
- * @param {Array} [results]
- * @param {Array} [seed] A set of elements to match against
- */
-select = Sizzle.select = function( selector, context, results, seed ) {
-	var i, tokens, token, type, find,
-		compiled = typeof selector === "function" && selector,
-		match = !seed && tokenize( ( selector = compiled.selector || selector ) );
-
-	results = results || [];
-
-	// Try to minimize operations if there is only one selector in the list and no seed
-	// (the latter of which guarantees us context)
-	if ( match.length === 1 ) {
-
-		// Reduce context if the leading compound selector is an ID
-		tokens = match[ 0 ] = match[ 0 ].slice( 0 );
-		if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" &&
-			context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) {
-
-			context = ( Expr.find[ "ID" ]( token.matches[ 0 ]
-				.replace( runescape, funescape ), context ) || [] )[ 0 ];
-			if ( !context ) {
-				return results;
-
-			// Precompiled matchers will still verify ancestry, so step up a level
-			} else if ( compiled ) {
-				context = context.parentNode;
-			}
-
-			selector = selector.slice( tokens.shift().value.length );
-		}
-
-		// Fetch a seed set for right-to-left matching
-		i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length;
-		while ( i-- ) {
-			token = tokens[ i ];
-
-			// Abort if we hit a combinator
-			if ( Expr.relative[ ( type = token.type ) ] ) {
-				break;
-			}
-			if ( ( find = Expr.find[ type ] ) ) {
-
-				// Search, expanding context for leading sibling combinators
-				if ( ( seed = find(
-					token.matches[ 0 ].replace( runescape, funescape ),
-					rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) ||
-						context
-				) ) ) {
-
-					// If seed is empty or no tokens remain, we can return early
-					tokens.splice( i, 1 );
-					selector = seed.length && toSelector( tokens );
-					if ( !selector ) {
-						push.apply( results, seed );
-						return results;
-					}
-
-					break;
-				}
-			}
-		}
-	}
-
-	// Compile and execute a filtering function if one is not provided
-	// Provide `match` to avoid retokenization if we modified the selector above
-	( compiled || compile( selector, match ) )(
-		seed,
-		context,
-		!documentIsHTML,
-		results,
-		!context || rsibling.test( selector ) && testContext( context.parentNode ) || context
-	);
-	return results;
-};
-
-// One-time assignments
-
-// Sort stability
-support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando;
-
-// Support: Chrome 14-35+
-// Always assume duplicates if they aren't passed to the comparison function
-support.detectDuplicates = !!hasDuplicate;
-
-// Initialize against the default document
-setDocument();
-
-// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27)
-// Detached nodes confoundingly follow *each other*
-support.sortDetached = assert( function( el ) {
-
-	// Should return 1, but returns 4 (following)
-	return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1;
-} );
-
-// Support: IE<8
-// Prevent attribute/property "interpolation"
-// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx
-if ( !assert( function( el ) {
-	el.innerHTML = "<a href='#'></a>";
-	return el.firstChild.getAttribute( "href" ) === "#";
-} ) ) {
-	addHandle( "type|href|height|width", function( elem, name, isXML ) {
-		if ( !isXML ) {
-			return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 );
-		}
-	} );
-}
-
-// Support: IE<9
-// Use defaultValue in place of getAttribute("value")
-if ( !support.attributes || !assert( function( el ) {
-	el.innerHTML = "<input/>";
-	el.firstChild.setAttribute( "value", "" );
-	return el.firstChild.getAttribute( "value" ) === "";
-} ) ) {
-	addHandle( "value", function( elem, _name, isXML ) {
-		if ( !isXML && elem.nodeName.toLowerCase() === "input" ) {
-			return elem.defaultValue;
-		}
-	} );
-}
-
-// Support: IE<9
-// Use getAttributeNode to fetch booleans when getAttribute lies
-if ( !assert( function( el ) {
-	return el.getAttribute( "disabled" ) == null;
-} ) ) {
-	addHandle( booleans, function( elem, name, isXML ) {
-		var val;
-		if ( !isXML ) {
-			return elem[ name ] === true ? name.toLowerCase() :
-				( val = elem.getAttributeNode( name ) ) && val.specified ?
-					val.value :
-					null;
-		}
-	} );
-}
-
-return Sizzle;
-
-} )( window );
-
-
-
-jQuery.find = Sizzle;
-jQuery.expr = Sizzle.selectors;
-
-// Deprecated
-jQuery.expr[ ":" ] = jQuery.expr.pseudos;
-jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort;
-jQuery.text = Sizzle.getText;
-jQuery.isXMLDoc = Sizzle.isXML;
-jQuery.contains = Sizzle.contains;
-jQuery.escapeSelector = Sizzle.escape;
-
-
-
-
-var dir = function( elem, dir, until ) {
-	var matched = [],
-		truncate = until !== undefined;
-
-	while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) {
-		if ( elem.nodeType === 1 ) {
-			if ( truncate && jQuery( elem ).is( until ) ) {
-				break;
-			}
-			matched.push( elem );
-		}
-	}
-	return matched;
-};
-
-
-var siblings = function( n, elem ) {
-	var matched = [];
-
-	for ( ; n; n = n.nextSibling ) {
-		if ( n.nodeType === 1 && n !== elem ) {
-			matched.push( n );
-		}
-	}
-
-	return matched;
-};
-
-
-var rneedsContext = jQuery.expr.match.needsContext;
-
-
-
-function nodeName( elem, name ) {
-
-	return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase();
-
-}
-var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i );
-
-
-
-// Implement the identical functionality for filter and not
-function winnow( elements, qualifier, not ) {
-	if ( isFunction( qualifier ) ) {
-		return jQuery.grep( elements, function( elem, i ) {
-			return !!qualifier.call( elem, i, elem ) !== not;
-		} );
-	}
-
-	// Single element
-	if ( qualifier.nodeType ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( elem === qualifier ) !== not;
-		} );
-	}
-
-	// Arraylike of elements (jQuery, arguments, Array)
-	if ( typeof qualifier !== "string" ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( indexOf.call( qualifier, elem ) > -1 ) !== not;
-		} );
-	}
-
-	// Filtered directly for both simple and complex selectors
-	return jQuery.filter( qualifier, elements, not );
-}
-
-jQuery.filter = function( expr, elems, not ) {
-	var elem = elems[ 0 ];
-
-	if ( not ) {
-		expr = ":not(" + expr + ")";
-	}
-
-	if ( elems.length === 1 && elem.nodeType === 1 ) {
-		return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : [];
-	}
-
-	return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) {
-		return elem.nodeType === 1;
-	} ) );
-};
-
-jQuery.fn.extend( {
-	find: function( selector ) {
-		var i, ret,
-			len = this.length,
-			self = this;
-
-		if ( typeof selector !== "string" ) {
-			return this.pushStack( jQuery( selector ).filter( function() {
-				for ( i = 0; i < len; i++ ) {
-					if ( jQuery.contains( self[ i ], this ) ) {
-						return true;
-					}
-				}
-			} ) );
-		}
-
-		ret = this.pushStack( [] );
-
-		for ( i = 0; i < len; i++ ) {
-			jQuery.find( selector, self[ i ], ret );
-		}
-
-		return len > 1 ? jQuery.uniqueSort( ret ) : ret;
-	},
-	filter: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], false ) );
-	},
-	not: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], true ) );
-	},
-	is: function( selector ) {
-		return !!winnow(
-			this,
-
-			// If this is a positional/relative selector, check membership in the returned set
-			// so $("p:first").is("p:last") won't return true for a doc with two "p".
-			typeof selector === "string" && rneedsContext.test( selector ) ?
-				jQuery( selector ) :
-				selector || [],
-			false
-		).length;
-	}
-} );
-
-
-// Initialize a jQuery object
-
-
-// A central reference to the root jQuery(document)
-var rootjQuery,
-
-	// A simple way to check for HTML strings
-	// Prioritize #id over <tag> to avoid XSS via location.hash (#9521)
-	// Strict HTML recognition (#11290: must start with <)
-	// Shortcut simple #id case for speed
-	rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/,
-
-	init = jQuery.fn.init = function( selector, context, root ) {
-		var match, elem;
-
-		// HANDLE: $(""), $(null), $(undefined), $(false)
-		if ( !selector ) {
-			return this;
-		}
-
-		// Method init() accepts an alternate rootjQuery
-		// so migrate can support jQuery.sub (gh-2101)
-		root = root || rootjQuery;
-
-		// Handle HTML strings
-		if ( typeof selector === "string" ) {
-			if ( selector[ 0 ] === "<" &&
-				selector[ selector.length - 1 ] === ">" &&
-				selector.length >= 3 ) {
-
-				// Assume that strings that start and end with <> are HTML and skip the regex check
-				match = [ null, selector, null ];
-
-			} else {
-				match = rquickExpr.exec( selector );
-			}
-
-			// Match html or make sure no context is specified for #id
-			if ( match && ( match[ 1 ] || !context ) ) {
-
-				// HANDLE: $(html) -> $(array)
-				if ( match[ 1 ] ) {
-					context = context instanceof jQuery ? context[ 0 ] : context;
-
-					// Option to run scripts is true for back-compat
-					// Intentionally let the error be thrown if parseHTML is not present
-					jQuery.merge( this, jQuery.parseHTML(
-						match[ 1 ],
-						context && context.nodeType ? context.ownerDocument || context : document,
-						true
-					) );
-
-					// HANDLE: $(html, props)
-					if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) {
-						for ( match in context ) {
-
-							// Properties of context are called as methods if possible
-							if ( isFunction( this[ match ] ) ) {
-								this[ match ]( context[ match ] );
-
-							// ...and otherwise set as attributes
-							} else {
-								this.attr( match, context[ match ] );
-							}
-						}
-					}
-
-					return this;
-
-				// HANDLE: $(#id)
-				} else {
-					elem = document.getElementById( match[ 2 ] );
-
-					if ( elem ) {
-
-						// Inject the element directly into the jQuery object
-						this[ 0 ] = elem;
-						this.length = 1;
-					}
-					return this;
-				}
-
-			// HANDLE: $(expr, $(...))
-			} else if ( !context || context.jquery ) {
-				return ( context || root ).find( selector );
-
-			// HANDLE: $(expr, context)
-			// (which is just equivalent to: $(context).find(expr)
-			} else {
-				return this.constructor( context ).find( selector );
-			}
-
-		// HANDLE: $(DOMElement)
-		} else if ( selector.nodeType ) {
-			this[ 0 ] = selector;
-			this.length = 1;
-			return this;
-
-		// HANDLE: $(function)
-		// Shortcut for document ready
-		} else if ( isFunction( selector ) ) {
-			return root.ready !== undefined ?
-				root.ready( selector ) :
-
-				// Execute immediately if ready is not present
-				selector( jQuery );
-		}
-
-		return jQuery.makeArray( selector, this );
-	};
-
-// Give the init function the jQuery prototype for later instantiation
-init.prototype = jQuery.fn;
-
-// Initialize central reference
-rootjQuery = jQuery( document );
-
-
-var rparentsprev = /^(?:parents|prev(?:Until|All))/,
-
-	// Methods guaranteed to produce a unique set when starting from a unique set
-	guaranteedUnique = {
-		children: true,
-		contents: true,
-		next: true,
-		prev: true
-	};
-
-jQuery.fn.extend( {
-	has: function( target ) {
-		var targets = jQuery( target, this ),
-			l = targets.length;
-
-		return this.filter( function() {
-			var i = 0;
-			for ( ; i < l; i++ ) {
-				if ( jQuery.contains( this, targets[ i ] ) ) {
-					return true;
-				}
-			}
-		} );
-	},
-
-	closest: function( selectors, context ) {
-		var cur,
-			i = 0,
-			l = this.length,
-			matched = [],
-			targets = typeof selectors !== "string" && jQuery( selectors );
-
-		// Positional selectors never match, since there's no _selection_ context
-		if ( !rneedsContext.test( selectors ) ) {
-			for ( ; i < l; i++ ) {
-				for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) {
-
-					// Always skip document fragments
-					if ( cur.nodeType < 11 && ( targets ?
-						targets.index( cur ) > -1 :
-
-						// Don't pass non-elements to Sizzle
-						cur.nodeType === 1 &&
-							jQuery.find.matchesSelector( cur, selectors ) ) ) {
-
-						matched.push( cur );
-						break;
-					}
-				}
-			}
-		}
-
-		return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched );
-	},
-
-	// Determine the position of an element within the set
-	index: function( elem ) {
-
-		// No argument, return index in parent
-		if ( !elem ) {
-			return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1;
-		}
-
-		// Index in selector
-		if ( typeof elem === "string" ) {
-			return indexOf.call( jQuery( elem ), this[ 0 ] );
-		}
-
-		// Locate the position of the desired element
-		return indexOf.call( this,
-
-			// If it receives a jQuery object, the first element is used
-			elem.jquery ? elem[ 0 ] : elem
-		);
-	},
-
-	add: function( selector, context ) {
-		return this.pushStack(
-			jQuery.uniqueSort(
-				jQuery.merge( this.get(), jQuery( selector, context ) )
-			)
-		);
-	},
-
-	addBack: function( selector ) {
-		return this.add( selector == null ?
-			this.prevObject : this.prevObject.filter( selector )
-		);
-	}
-} );
-
-function sibling( cur, dir ) {
-	while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {}
-	return cur;
-}
-
-jQuery.each( {
-	parent: function( elem ) {
-		var parent = elem.parentNode;
-		return parent && parent.nodeType !== 11 ? parent : null;
-	},
-	parents: function( elem ) {
-		return dir( elem, "parentNode" );
-	},
-	parentsUntil: function( elem, _i, until ) {
-		return dir( elem, "parentNode", until );
-	},
-	next: function( elem ) {
-		return sibling( elem, "nextSibling" );
-	},
-	prev: function( elem ) {
-		return sibling( elem, "previousSibling" );
-	},
-	nextAll: function( elem ) {
-		return dir( elem, "nextSibling" );
-	},
-	prevAll: function( elem ) {
-		return dir( elem, "previousSibling" );
-	},
-	nextUntil: function( elem, _i, until ) {
-		return dir( elem, "nextSibling", until );
-	},
-	prevUntil: function( elem, _i, until ) {
-		return dir( elem, "previousSibling", until );
-	},
-	siblings: function( elem ) {
-		return siblings( ( elem.parentNode || {} ).firstChild, elem );
-	},
-	children: function( elem ) {
-		return siblings( elem.firstChild );
-	},
-	contents: function( elem ) {
-		if ( elem.contentDocument != null &&
-
-			// Support: IE 11+
-			// <object> elements with no `data` attribute has an object
-			// `contentDocument` with a `null` prototype.
-			getProto( elem.contentDocument ) ) {
-
-			return elem.contentDocument;
-		}
-
-		// Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only
-		// Treat the template element as a regular one in browsers that
-		// don't support it.
-		if ( nodeName( elem, "template" ) ) {
-			elem = elem.content || elem;
-		}
-
-		return jQuery.merge( [], elem.childNodes );
-	}
-}, function( name, fn ) {
-	jQuery.fn[ name ] = function( until, selector ) {
-		var matched = jQuery.map( this, fn, until );
-
-		if ( name.slice( -5 ) !== "Until" ) {
-			selector = until;
-		}
-
-		if ( selector && typeof selector === "string" ) {
-			matched = jQuery.filter( selector, matched );
-		}
-
-		if ( this.length > 1 ) {
-
-			// Remove duplicates
-			if ( !guaranteedUnique[ name ] ) {
-				jQuery.uniqueSort( matched );
-			}
-
-			// Reverse order for parents* and prev-derivatives
-			if ( rparentsprev.test( name ) ) {
-				matched.reverse();
-			}
-		}
-
-		return this.pushStack( matched );
-	};
-} );
-var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g );
-
-
-
-// Convert String-formatted options into Object-formatted ones
-function createOptions( options ) {
-	var object = {};
-	jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) {
-		object[ flag ] = true;
-	} );
-	return object;
-}
-
-/*
- * Create a callback list using the following parameters:
- *
- *	options: an optional list of space-separated options that will change how
- *			the callback list behaves or a more traditional option object
- *
- * By default a callback list will act like an event callback list and can be
- * "fired" multiple times.
- *
- * Possible options:
- *
- *	once:			will ensure the callback list can only be fired once (like a Deferred)
- *
- *	memory:			will keep track of previous values and will call any callback added
- *					after the list has been fired right away with the latest "memorized"
- *					values (like a Deferred)
- *
- *	unique:			will ensure a callback can only be added once (no duplicate in the list)
- *
- *	stopOnFalse:	interrupt callings when a callback returns false
- *
- */
-jQuery.Callbacks = function( options ) {
-
-	// Convert options from String-formatted to Object-formatted if needed
-	// (we check in cache first)
-	options = typeof options === "string" ?
-		createOptions( options ) :
-		jQuery.extend( {}, options );
-
-	var // Flag to know if list is currently firing
-		firing,
-
-		// Last fire value for non-forgettable lists
-		memory,
-
-		// Flag to know if list was already fired
-		fired,
-
-		// Flag to prevent firing
-		locked,
-
-		// Actual callback list
-		list = [],
-
-		// Queue of execution data for repeatable lists
-		queue = [],
-
-		// Index of currently firing callback (modified by add/remove as needed)
-		firingIndex = -1,
-
-		// Fire callbacks
-		fire = function() {
-
-			// Enforce single-firing
-			locked = locked || options.once;
-
-			// Execute callbacks for all pending executions,
-			// respecting firingIndex overrides and runtime changes
-			fired = firing = true;
-			for ( ; queue.length; firingIndex = -1 ) {
-				memory = queue.shift();
-				while ( ++firingIndex < list.length ) {
-
-					// Run callback and check for early termination
-					if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false &&
-						options.stopOnFalse ) {
-
-						// Jump to end and forget the data so .add doesn't re-fire
-						firingIndex = list.length;
-						memory = false;
-					}
-				}
-			}
-
-			// Forget the data if we're done with it
-			if ( !options.memory ) {
-				memory = false;
-			}
-
-			firing = false;
-
-			// Clean up if we're done firing for good
-			if ( locked ) {
-
-				// Keep an empty list if we have data for future add calls
-				if ( memory ) {
-					list = [];
-
-				// Otherwise, this object is spent
-				} else {
-					list = "";
-				}
-			}
-		},
-
-		// Actual Callbacks object
-		self = {
-
-			// Add a callback or a collection of callbacks to the list
-			add: function() {
-				if ( list ) {
-
-					// If we have memory from a past run, we should fire after adding
-					if ( memory && !firing ) {
-						firingIndex = list.length - 1;
-						queue.push( memory );
-					}
-
-					( function add( args ) {
-						jQuery.each( args, function( _, arg ) {
-							if ( isFunction( arg ) ) {
-								if ( !options.unique || !self.has( arg ) ) {
-									list.push( arg );
-								}
-							} else if ( arg && arg.length && toType( arg ) !== "string" ) {
-
-								// Inspect recursively
-								add( arg );
-							}
-						} );
-					} )( arguments );
-
-					if ( memory && !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Remove a callback from the list
-			remove: function() {
-				jQuery.each( arguments, function( _, arg ) {
-					var index;
-					while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) {
-						list.splice( index, 1 );
-
-						// Handle firing indexes
-						if ( index <= firingIndex ) {
-							firingIndex--;
-						}
-					}
-				} );
-				return this;
-			},
-
-			// Check if a given callback is in the list.
-			// If no argument is given, return whether or not list has callbacks attached.
-			has: function( fn ) {
-				return fn ?
-					jQuery.inArray( fn, list ) > -1 :
-					list.length > 0;
-			},
-
-			// Remove all callbacks from the list
-			empty: function() {
-				if ( list ) {
-					list = [];
-				}
-				return this;
-			},
-
-			// Disable .fire and .add
-			// Abort any current/pending executions
-			// Clear all callbacks and values
-			disable: function() {
-				locked = queue = [];
-				list = memory = "";
-				return this;
-			},
-			disabled: function() {
-				return !list;
-			},
-
-			// Disable .fire
-			// Also disable .add unless we have memory (since it would have no effect)
-			// Abort any pending executions
-			lock: function() {
-				locked = queue = [];
-				if ( !memory && !firing ) {
-					list = memory = "";
-				}
-				return this;
-			},
-			locked: function() {
-				return !!locked;
-			},
-
-			// Call all callbacks with the given context and arguments
-			fireWith: function( context, args ) {
-				if ( !locked ) {
-					args = args || [];
-					args = [ context, args.slice ? args.slice() : args ];
-					queue.push( args );
-					if ( !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Call all the callbacks with the given arguments
-			fire: function() {
-				self.fireWith( this, arguments );
-				return this;
-			},
-
-			// To know if the callbacks have already been called at least once
-			fired: function() {
-				return !!fired;
-			}
-		};
-
-	return self;
-};
-
-
-function Identity( v ) {
-	return v;
-}
-function Thrower( ex ) {
-	throw ex;
-}
-
-function adoptValue( value, resolve, reject, noValue ) {
-	var method;
-
-	try {
-
-		// Check for promise aspect first to privilege synchronous behavior
-		if ( value && isFunction( ( method = value.promise ) ) ) {
-			method.call( value ).done( resolve ).fail( reject );
-
-		// Other thenables
-		} else if ( value && isFunction( ( method = value.then ) ) ) {
-			method.call( value, resolve, reject );
-
-		// Other non-thenables
-		} else {
-
-			// Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer:
-			// * false: [ value ].slice( 0 ) => resolve( value )
-			// * true: [ value ].slice( 1 ) => resolve()
-			resolve.apply( undefined, [ value ].slice( noValue ) );
-		}
-
-	// For Promises/A+, convert exceptions into rejections
-	// Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in
-	// Deferred#then to conditionally suppress rejection.
-	} catch ( value ) {
-
-		// Support: Android 4.0 only
-		// Strict mode functions invoked without .call/.apply get global-object context
-		reject.apply( undefined, [ value ] );
-	}
-}
-
-jQuery.extend( {
-
-	Deferred: function( func ) {
-		var tuples = [
-
-				// action, add listener, callbacks,
-				// ... .then handlers, argument index, [final state]
-				[ "notify", "progress", jQuery.Callbacks( "memory" ),
-					jQuery.Callbacks( "memory" ), 2 ],
-				[ "resolve", "done", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 0, "resolved" ],
-				[ "reject", "fail", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 1, "rejected" ]
-			],
-			state = "pending",
-			promise = {
-				state: function() {
-					return state;
-				},
-				always: function() {
-					deferred.done( arguments ).fail( arguments );
-					return this;
-				},
-				"catch": function( fn ) {
-					return promise.then( null, fn );
-				},
-
-				// Keep pipe for back-compat
-				pipe: function( /* fnDone, fnFail, fnProgress */ ) {
-					var fns = arguments;
-
-					return jQuery.Deferred( function( newDefer ) {
-						jQuery.each( tuples, function( _i, tuple ) {
-
-							// Map tuples (progress, done, fail) to arguments (done, fail, progress)
-							var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ];
-
-							// deferred.progress(function() { bind to newDefer or newDefer.notify })
-							// deferred.done(function() { bind to newDefer or newDefer.resolve })
-							// deferred.fail(function() { bind to newDefer or newDefer.reject })
-							deferred[ tuple[ 1 ] ]( function() {
-								var returned = fn && fn.apply( this, arguments );
-								if ( returned && isFunction( returned.promise ) ) {
-									returned.promise()
-										.progress( newDefer.notify )
-										.done( newDefer.resolve )
-										.fail( newDefer.reject );
-								} else {
-									newDefer[ tuple[ 0 ] + "With" ](
-										this,
-										fn ? [ returned ] : arguments
-									);
-								}
-							} );
-						} );
-						fns = null;
-					} ).promise();
-				},
-				then: function( onFulfilled, onRejected, onProgress ) {
-					var maxDepth = 0;
-					function resolve( depth, deferred, handler, special ) {
-						return function() {
-							var that = this,
-								args = arguments,
-								mightThrow = function() {
-									var returned, then;
-
-									// Support: Promises/A+ section 2.3.3.3.3
-									// https://promisesaplus.com/#point-59
-									// Ignore double-resolution attempts
-									if ( depth < maxDepth ) {
-										return;
-									}
-
-									returned = handler.apply( that, args );
-
-									// Support: Promises/A+ section 2.3.1
-									// https://promisesaplus.com/#point-48
-									if ( returned === deferred.promise() ) {
-										throw new TypeError( "Thenable self-resolution" );
-									}
-
-									// Support: Promises/A+ sections 2.3.3.1, 3.5
-									// https://promisesaplus.com/#point-54
-									// https://promisesaplus.com/#point-75
-									// Retrieve `then` only once
-									then = returned &&
-
-										// Support: Promises/A+ section 2.3.4
-										// https://promisesaplus.com/#point-64
-										// Only check objects and functions for thenability
-										( typeof returned === "object" ||
-											typeof returned === "function" ) &&
-										returned.then;
-
-									// Handle a returned thenable
-									if ( isFunction( then ) ) {
-
-										// Special processors (notify) just wait for resolution
-										if ( special ) {
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special )
-											);
-
-										// Normal processors (resolve) also hook into progress
-										} else {
-
-											// ...and disregard older resolution values
-											maxDepth++;
-
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special ),
-												resolve( maxDepth, deferred, Identity,
-													deferred.notifyWith )
-											);
-										}
-
-									// Handle all other returned values
-									} else {
-
-										// Only substitute handlers pass on context
-										// and multiple values (non-spec behavior)
-										if ( handler !== Identity ) {
-											that = undefined;
-											args = [ returned ];
-										}
-
-										// Process the value(s)
-										// Default process is resolve
-										( special || deferred.resolveWith )( that, args );
-									}
-								},
-
-								// Only normal processors (resolve) catch and reject exceptions
-								process = special ?
-									mightThrow :
-									function() {
-										try {
-											mightThrow();
-										} catch ( e ) {
-
-											if ( jQuery.Deferred.exceptionHook ) {
-												jQuery.Deferred.exceptionHook( e,
-													process.stackTrace );
-											}
-
-											// Support: Promises/A+ section 2.3.3.3.4.1
-											// https://promisesaplus.com/#point-61
-											// Ignore post-resolution exceptions
-											if ( depth + 1 >= maxDepth ) {
-
-												// Only substitute handlers pass on context
-												// and multiple values (non-spec behavior)
-												if ( handler !== Thrower ) {
-													that = undefined;
-													args = [ e ];
-												}
-
-												deferred.rejectWith( that, args );
-											}
-										}
-									};
-
-							// Support: Promises/A+ section 2.3.3.3.1
-							// https://promisesaplus.com/#point-57
-							// Re-resolve promises immediately to dodge false rejection from
-							// subsequent errors
-							if ( depth ) {
-								process();
-							} else {
-
-								// Call an optional hook to record the stack, in case of exception
-								// since it's otherwise lost when execution goes async
-								if ( jQuery.Deferred.getStackHook ) {
-									process.stackTrace = jQuery.Deferred.getStackHook();
-								}
-								window.setTimeout( process );
-							}
-						};
-					}
-
-					return jQuery.Deferred( function( newDefer ) {
-
-						// progress_handlers.add( ... )
-						tuples[ 0 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onProgress ) ?
-									onProgress :
-									Identity,
-								newDefer.notifyWith
-							)
-						);
-
-						// fulfilled_handlers.add( ... )
-						tuples[ 1 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onFulfilled ) ?
-									onFulfilled :
-									Identity
-							)
-						);
-
-						// rejected_handlers.add( ... )
-						tuples[ 2 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onRejected ) ?
-									onRejected :
-									Thrower
-							)
-						);
-					} ).promise();
-				},
-
-				// Get a promise for this deferred
-				// If obj is provided, the promise aspect is added to the object
-				promise: function( obj ) {
-					return obj != null ? jQuery.extend( obj, promise ) : promise;
-				}
-			},
-			deferred = {};
-
-		// Add list-specific methods
-		jQuery.each( tuples, function( i, tuple ) {
-			var list = tuple[ 2 ],
-				stateString = tuple[ 5 ];
-
-			// promise.progress = list.add
-			// promise.done = list.add
-			// promise.fail = list.add
-			promise[ tuple[ 1 ] ] = list.add;
-
-			// Handle state
-			if ( stateString ) {
-				list.add(
-					function() {
-
-						// state = "resolved" (i.e., fulfilled)
-						// state = "rejected"
-						state = stateString;
-					},
-
-					// rejected_callbacks.disable
-					// fulfilled_callbacks.disable
-					tuples[ 3 - i ][ 2 ].disable,
-
-					// rejected_handlers.disable
-					// fulfilled_handlers.disable
-					tuples[ 3 - i ][ 3 ].disable,
-
-					// progress_callbacks.lock
-					tuples[ 0 ][ 2 ].lock,
-
-					// progress_handlers.lock
-					tuples[ 0 ][ 3 ].lock
-				);
-			}
-
-			// progress_handlers.fire
-			// fulfilled_handlers.fire
-			// rejected_handlers.fire
-			list.add( tuple[ 3 ].fire );
-
-			// deferred.notify = function() { deferred.notifyWith(...) }
-			// deferred.resolve = function() { deferred.resolveWith(...) }
-			// deferred.reject = function() { deferred.rejectWith(...) }
-			deferred[ tuple[ 0 ] ] = function() {
-				deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments );
-				return this;
-			};
-
-			// deferred.notifyWith = list.fireWith
-			// deferred.resolveWith = list.fireWith
-			// deferred.rejectWith = list.fireWith
-			deferred[ tuple[ 0 ] + "With" ] = list.fireWith;
-		} );
-
-		// Make the deferred a promise
-		promise.promise( deferred );
-
-		// Call given func if any
-		if ( func ) {
-			func.call( deferred, deferred );
-		}
-
-		// All done!
-		return deferred;
-	},
-
-	// Deferred helper
-	when: function( singleValue ) {
-		var
-
-			// count of uncompleted subordinates
-			remaining = arguments.length,
-
-			// count of unprocessed arguments
-			i = remaining,
-
-			// subordinate fulfillment data
-			resolveContexts = Array( i ),
-			resolveValues = slice.call( arguments ),
-
-			// the primary Deferred
-			primary = jQuery.Deferred(),
-
-			// subordinate callback factory
-			updateFunc = function( i ) {
-				return function( value ) {
-					resolveContexts[ i ] = this;
-					resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value;
-					if ( !( --remaining ) ) {
-						primary.resolveWith( resolveContexts, resolveValues );
-					}
-				};
-			};
-
-		// Single- and empty arguments are adopted like Promise.resolve
-		if ( remaining <= 1 ) {
-			adoptValue( singleValue, primary.done( updateFunc( i ) ).resolve, primary.reject,
-				!remaining );
-
-			// Use .then() to unwrap secondary thenables (cf. gh-3000)
-			if ( primary.state() === "pending" ||
-				isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) {
-
-				return primary.then();
-			}
-		}
-
-		// Multiple arguments are aggregated like Promise.all array elements
-		while ( i-- ) {
-			adoptValue( resolveValues[ i ], updateFunc( i ), primary.reject );
-		}
-
-		return primary.promise();
-	}
-} );
-
-
-// These usually indicate a programmer mistake during development,
-// warn about them ASAP rather than swallowing them by default.
-var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/;
-
-jQuery.Deferred.exceptionHook = function( error, stack ) {
-
-	// Support: IE 8 - 9 only
-	// Console exists when dev tools are open, which can happen at any time
-	if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) {
-		window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack );
-	}
-};
-
-
-
-
-jQuery.readyException = function( error ) {
-	window.setTimeout( function() {
-		throw error;
-	} );
-};
-
-
-
-
-// The deferred used on DOM ready
-var readyList = jQuery.Deferred();
-
-jQuery.fn.ready = function( fn ) {
-
-	readyList
-		.then( fn )
-
-		// Wrap jQuery.readyException in a function so that the lookup
-		// happens at the time of error handling instead of callback
-		// registration.
-		.catch( function( error ) {
-			jQuery.readyException( error );
-		} );
-
-	return this;
-};
-
-jQuery.extend( {
-
-	// Is the DOM ready to be used? Set to true once it occurs.
-	isReady: false,
-
-	// A counter to track how many items to wait for before
-	// the ready event fires. See #6781
-	readyWait: 1,
-
-	// Handle when the DOM is ready
-	ready: function( wait ) {
-
-		// Abort if there are pending holds or we're already ready
-		if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) {
-			return;
-		}
-
-		// Remember that the DOM is ready
-		jQuery.isReady = true;
-
-		// If a normal DOM Ready event fired, decrement, and wait if need be
-		if ( wait !== true && --jQuery.readyWait > 0 ) {
-			return;
-		}
-
-		// If there are functions bound, to execute
-		readyList.resolveWith( document, [ jQuery ] );
-	}
-} );
-
-jQuery.ready.then = readyList.then;
-
-// The ready event handler and self cleanup method
-function completed() {
-	document.removeEventListener( "DOMContentLoaded", completed );
-	window.removeEventListener( "load", completed );
-	jQuery.ready();
-}
-
-// Catch cases where $(document).ready() is called
-// after the browser event has already occurred.
-// Support: IE <=9 - 10 only
-// Older IE sometimes signals "interactive" too soon
-if ( document.readyState === "complete" ||
-	( document.readyState !== "loading" && !document.documentElement.doScroll ) ) {
-
-	// Handle it asynchronously to allow scripts the opportunity to delay ready
-	window.setTimeout( jQuery.ready );
-
-} else {
-
-	// Use the handy event callback
-	document.addEventListener( "DOMContentLoaded", completed );
-
-	// A fallback to window.onload, that will always work
-	window.addEventListener( "load", completed );
-}
-
-
-
-
-// Multifunctional method to get and set values of a collection
-// The value/s can optionally be executed if it's a function
-var access = function( elems, fn, key, value, chainable, emptyGet, raw ) {
-	var i = 0,
-		len = elems.length,
-		bulk = key == null;
-
-	// Sets many values
-	if ( toType( key ) === "object" ) {
-		chainable = true;
-		for ( i in key ) {
-			access( elems, fn, i, key[ i ], true, emptyGet, raw );
-		}
-
-	// Sets one value
-	} else if ( value !== undefined ) {
-		chainable = true;
-
-		if ( !isFunction( value ) ) {
-			raw = true;
-		}
-
-		if ( bulk ) {
-
-			// Bulk operations run against the entire set
-			if ( raw ) {
-				fn.call( elems, value );
-				fn = null;
-
-			// ...except when executing function values
-			} else {
-				bulk = fn;
-				fn = function( elem, _key, value ) {
-					return bulk.call( jQuery( elem ), value );
-				};
-			}
-		}
-
-		if ( fn ) {
-			for ( ; i < len; i++ ) {
-				fn(
-					elems[ i ], key, raw ?
-						value :
-						value.call( elems[ i ], i, fn( elems[ i ], key ) )
-				);
-			}
-		}
-	}
-
-	if ( chainable ) {
-		return elems;
-	}
-
-	// Gets
-	if ( bulk ) {
-		return fn.call( elems );
-	}
-
-	return len ? fn( elems[ 0 ], key ) : emptyGet;
-};
-
-
-// Matches dashed string for camelizing
-var rmsPrefix = /^-ms-/,
-	rdashAlpha = /-([a-z])/g;
-
-// Used by camelCase as callback to replace()
-function fcamelCase( _all, letter ) {
-	return letter.toUpperCase();
-}
-
-// Convert dashed to camelCase; used by the css and data modules
-// Support: IE <=9 - 11, Edge 12 - 15
-// Microsoft forgot to hump their vendor prefix (#9572)
-function camelCase( string ) {
-	return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase );
-}
-var acceptData = function( owner ) {
-
-	// Accepts only:
-	//  - Node
-	//    - Node.ELEMENT_NODE
-	//    - Node.DOCUMENT_NODE
-	//  - Object
-	//    - Any
-	return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType );
-};
-
-
-
-
-function Data() {
-	this.expando = jQuery.expando + Data.uid++;
-}
-
-Data.uid = 1;
-
-Data.prototype = {
-
-	cache: function( owner ) {
-
-		// Check if the owner object already has a cache
-		var value = owner[ this.expando ];
-
-		// If not, create one
-		if ( !value ) {
-			value = {};
-
-			// We can accept data for non-element nodes in modern browsers,
-			// but we should not, see #8335.
-			// Always return an empty object.
-			if ( acceptData( owner ) ) {
-
-				// If it is a node unlikely to be stringify-ed or looped over
-				// use plain assignment
-				if ( owner.nodeType ) {
-					owner[ this.expando ] = value;
-
-				// Otherwise secure it in a non-enumerable property
-				// configurable must be true to allow the property to be
-				// deleted when data is removed
-				} else {
-					Object.defineProperty( owner, this.expando, {
-						value: value,
-						configurable: true
-					} );
-				}
-			}
-		}
-
-		return value;
-	},
-	set: function( owner, data, value ) {
-		var prop,
-			cache = this.cache( owner );
-
-		// Handle: [ owner, key, value ] args
-		// Always use camelCase key (gh-2257)
-		if ( typeof data === "string" ) {
-			cache[ camelCase( data ) ] = value;
-
-		// Handle: [ owner, { properties } ] args
-		} else {
-
-			// Copy the properties one-by-one to the cache object
-			for ( prop in data ) {
-				cache[ camelCase( prop ) ] = data[ prop ];
-			}
-		}
-		return cache;
-	},
-	get: function( owner, key ) {
-		return key === undefined ?
-			this.cache( owner ) :
-
-			// Always use camelCase key (gh-2257)
-			owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ];
-	},
-	access: function( owner, key, value ) {
-
-		// In cases where either:
-		//
-		//   1. No key was specified
-		//   2. A string key was specified, but no value provided
-		//
-		// Take the "read" path and allow the get method to determine
-		// which value to return, respectively either:
-		//
-		//   1. The entire cache object
-		//   2. The data stored at the key
-		//
-		if ( key === undefined ||
-				( ( key && typeof key === "string" ) && value === undefined ) ) {
-
-			return this.get( owner, key );
-		}
-
-		// When the key is not a string, or both a key and value
-		// are specified, set or extend (existing objects) with either:
-		//
-		//   1. An object of properties
-		//   2. A key and value
-		//
-		this.set( owner, key, value );
-
-		// Since the "set" path can have two possible entry points
-		// return the expected data based on which path was taken[*]
-		return value !== undefined ? value : key;
-	},
-	remove: function( owner, key ) {
-		var i,
-			cache = owner[ this.expando ];
-
-		if ( cache === undefined ) {
-			return;
-		}
-
-		if ( key !== undefined ) {
-
-			// Support array or space separated string of keys
-			if ( Array.isArray( key ) ) {
-
-				// If key is an array of keys...
-				// We always set camelCase keys, so remove that.
-				key = key.map( camelCase );
-			} else {
-				key = camelCase( key );
-
-				// If a key with the spaces exists, use it.
-				// Otherwise, create an array by matching non-whitespace
-				key = key in cache ?
-					[ key ] :
-					( key.match( rnothtmlwhite ) || [] );
-			}
-
-			i = key.length;
-
-			while ( i-- ) {
-				delete cache[ key[ i ] ];
-			}
-		}
-
-		// Remove the expando if there's no more data
-		if ( key === undefined || jQuery.isEmptyObject( cache ) ) {
-
-			// Support: Chrome <=35 - 45
-			// Webkit & Blink performance suffers when deleting properties
-			// from DOM nodes, so set to undefined instead
-			// https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted)
-			if ( owner.nodeType ) {
-				owner[ this.expando ] = undefined;
-			} else {
-				delete owner[ this.expando ];
-			}
-		}
-	},
-	hasData: function( owner ) {
-		var cache = owner[ this.expando ];
-		return cache !== undefined && !jQuery.isEmptyObject( cache );
-	}
-};
-var dataPriv = new Data();
-
-var dataUser = new Data();
-
-
-
-//	Implementation Summary
-//
-//	1. Enforce API surface and semantic compatibility with 1.9.x branch
-//	2. Improve the module's maintainability by reducing the storage
-//		paths to a single mechanism.
-//	3. Use the same single mechanism to support "private" and "user" data.
-//	4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData)
-//	5. Avoid exposing implementation details on user objects (eg. expando properties)
-//	6. Provide a clear path for implementation upgrade to WeakMap in 2014
-
-var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/,
-	rmultiDash = /[A-Z]/g;
-
-function getData( data ) {
-	if ( data === "true" ) {
-		return true;
-	}
-
-	if ( data === "false" ) {
-		return false;
-	}
-
-	if ( data === "null" ) {
-		return null;
-	}
-
-	// Only convert to a number if it doesn't change the string
-	if ( data === +data + "" ) {
-		return +data;
-	}
-
-	if ( rbrace.test( data ) ) {
-		return JSON.parse( data );
-	}
-
-	return data;
-}
-
-function dataAttr( elem, key, data ) {
-	var name;
-
-	// If nothing was found internally, try to fetch any
-	// data from the HTML5 data-* attribute
-	if ( data === undefined && elem.nodeType === 1 ) {
-		name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase();
-		data = elem.getAttribute( name );
-
-		if ( typeof data === "string" ) {
-			try {
-				data = getData( data );
-			} catch ( e ) {}
-
-			// Make sure we set the data so it isn't changed later
-			dataUser.set( elem, key, data );
-		} else {
-			data = undefined;
-		}
-	}
-	return data;
-}
-
-jQuery.extend( {
-	hasData: function( elem ) {
-		return dataUser.hasData( elem ) || dataPriv.hasData( elem );
-	},
-
-	data: function( elem, name, data ) {
-		return dataUser.access( elem, name, data );
-	},
-
-	removeData: function( elem, name ) {
-		dataUser.remove( elem, name );
-	},
-
-	// TODO: Now that all calls to _data and _removeData have been replaced
-	// with direct calls to dataPriv methods, these can be deprecated.
-	_data: function( elem, name, data ) {
-		return dataPriv.access( elem, name, data );
-	},
-
-	_removeData: function( elem, name ) {
-		dataPriv.remove( elem, name );
-	}
-} );
-
-jQuery.fn.extend( {
-	data: function( key, value ) {
-		var i, name, data,
-			elem = this[ 0 ],
-			attrs = elem && elem.attributes;
-
-		// Gets all values
-		if ( key === undefined ) {
-			if ( this.length ) {
-				data = dataUser.get( elem );
-
-				if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) {
-					i = attrs.length;
-					while ( i-- ) {
-
-						// Support: IE 11 only
-						// The attrs elements can be null (#14894)
-						if ( attrs[ i ] ) {
-							name = attrs[ i ].name;
-							if ( name.indexOf( "data-" ) === 0 ) {
-								name = camelCase( name.slice( 5 ) );
-								dataAttr( elem, name, data[ name ] );
-							}
-						}
-					}
-					dataPriv.set( elem, "hasDataAttrs", true );
-				}
-			}
-
-			return data;
-		}
-
-		// Sets multiple values
-		if ( typeof key === "object" ) {
-			return this.each( function() {
-				dataUser.set( this, key );
-			} );
-		}
-
-		return access( this, function( value ) {
-			var data;
-
-			// The calling jQuery object (element matches) is not empty
-			// (and therefore has an element appears at this[ 0 ]) and the
-			// `value` parameter was not undefined. An empty jQuery object
-			// will result in `undefined` for elem = this[ 0 ] which will
-			// throw an exception if an attempt to read a data cache is made.
-			if ( elem && value === undefined ) {
-
-				// Attempt to get data from the cache
-				// The key will always be camelCased in Data
-				data = dataUser.get( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// Attempt to "discover" the data in
-				// HTML5 custom data-* attrs
-				data = dataAttr( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// We tried really hard, but the data doesn't exist.
-				return;
-			}
-
-			// Set the data...
-			this.each( function() {
-
-				// We always store the camelCased key
-				dataUser.set( this, key, value );
-			} );
-		}, null, value, arguments.length > 1, null, true );
-	},
-
-	removeData: function( key ) {
-		return this.each( function() {
-			dataUser.remove( this, key );
-		} );
-	}
-} );
-
-
-jQuery.extend( {
-	queue: function( elem, type, data ) {
-		var queue;
-
-		if ( elem ) {
-			type = ( type || "fx" ) + "queue";
-			queue = dataPriv.get( elem, type );
-
-			// Speed up dequeue by getting out quickly if this is just a lookup
-			if ( data ) {
-				if ( !queue || Array.isArray( data ) ) {
-					queue = dataPriv.access( elem, type, jQuery.makeArray( data ) );
-				} else {
-					queue.push( data );
-				}
-			}
-			return queue || [];
-		}
-	},
-
-	dequeue: function( elem, type ) {
-		type = type || "fx";
-
-		var queue = jQuery.queue( elem, type ),
-			startLength = queue.length,
-			fn = queue.shift(),
-			hooks = jQuery._queueHooks( elem, type ),
-			next = function() {
-				jQuery.dequeue( elem, type );
-			};
-
-		// If the fx queue is dequeued, always remove the progress sentinel
-		if ( fn === "inprogress" ) {
-			fn = queue.shift();
-			startLength--;
-		}
-
-		if ( fn ) {
-
-			// Add a progress sentinel to prevent the fx queue from being
-			// automatically dequeued
-			if ( type === "fx" ) {
-				queue.unshift( "inprogress" );
-			}
-
-			// Clear up the last queue stop function
-			delete hooks.stop;
-			fn.call( elem, next, hooks );
-		}
-
-		if ( !startLength && hooks ) {
-			hooks.empty.fire();
-		}
-	},
-
-	// Not public - generate a queueHooks object, or return the current one
-	_queueHooks: function( elem, type ) {
-		var key = type + "queueHooks";
-		return dataPriv.get( elem, key ) || dataPriv.access( elem, key, {
-			empty: jQuery.Callbacks( "once memory" ).add( function() {
-				dataPriv.remove( elem, [ type + "queue", key ] );
-			} )
-		} );
-	}
-} );
-
-jQuery.fn.extend( {
-	queue: function( type, data ) {
-		var setter = 2;
-
-		if ( typeof type !== "string" ) {
-			data = type;
-			type = "fx";
-			setter--;
-		}
-
-		if ( arguments.length < setter ) {
-			return jQuery.queue( this[ 0 ], type );
-		}
-
-		return data === undefined ?
-			this :
-			this.each( function() {
-				var queue = jQuery.queue( this, type, data );
-
-				// Ensure a hooks for this queue
-				jQuery._queueHooks( this, type );
-
-				if ( type === "fx" && queue[ 0 ] !== "inprogress" ) {
-					jQuery.dequeue( this, type );
-				}
-			} );
-	},
-	dequeue: function( type ) {
-		return this.each( function() {
-			jQuery.dequeue( this, type );
-		} );
-	},
-	clearQueue: function( type ) {
-		return this.queue( type || "fx", [] );
-	},
-
-	// Get a promise resolved when queues of a certain type
-	// are emptied (fx is the type by default)
-	promise: function( type, obj ) {
-		var tmp,
-			count = 1,
-			defer = jQuery.Deferred(),
-			elements = this,
-			i = this.length,
-			resolve = function() {
-				if ( !( --count ) ) {
-					defer.resolveWith( elements, [ elements ] );
-				}
-			};
-
-		if ( typeof type !== "string" ) {
-			obj = type;
-			type = undefined;
-		}
-		type = type || "fx";
-
-		while ( i-- ) {
-			tmp = dataPriv.get( elements[ i ], type + "queueHooks" );
-			if ( tmp && tmp.empty ) {
-				count++;
-				tmp.empty.add( resolve );
-			}
-		}
-		resolve();
-		return defer.promise( obj );
-	}
-} );
-var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source;
-
-var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" );
-
-
-var cssExpand = [ "Top", "Right", "Bottom", "Left" ];
-
-var documentElement = document.documentElement;
-
-
-
-	var isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem );
-		},
-		composed = { composed: true };
-
-	// Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only
-	// Check attachment across shadow DOM boundaries when possible (gh-3504)
-	// Support: iOS 10.0-10.2 only
-	// Early iOS 10 versions support `attachShadow` but not `getRootNode`,
-	// leading to errors. We need to check for `getRootNode`.
-	if ( documentElement.getRootNode ) {
-		isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem ) ||
-				elem.getRootNode( composed ) === elem.ownerDocument;
-		};
-	}
-var isHiddenWithinTree = function( elem, el ) {
-
-		// isHiddenWithinTree might be called from jQuery#filter function;
-		// in that case, element will be second argument
-		elem = el || elem;
-
-		// Inline style trumps all
-		return elem.style.display === "none" ||
-			elem.style.display === "" &&
-
-			// Otherwise, check computed style
-			// Support: Firefox <=43 - 45
-			// Disconnected elements can have computed display: none, so first confirm that elem is
-			// in the document.
-			isAttached( elem ) &&
-
-			jQuery.css( elem, "display" ) === "none";
-	};
-
-
-
-function adjustCSS( elem, prop, valueParts, tween ) {
-	var adjusted, scale,
-		maxIterations = 20,
-		currentValue = tween ?
-			function() {
-				return tween.cur();
-			} :
-			function() {
-				return jQuery.css( elem, prop, "" );
-			},
-		initial = currentValue(),
-		unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ),
-
-		// Starting value computation is required for potential unit mismatches
-		initialInUnit = elem.nodeType &&
-			( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) &&
-			rcssNum.exec( jQuery.css( elem, prop ) );
-
-	if ( initialInUnit && initialInUnit[ 3 ] !== unit ) {
-
-		// Support: Firefox <=54
-		// Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144)
-		initial = initial / 2;
-
-		// Trust units reported by jQuery.css
-		unit = unit || initialInUnit[ 3 ];
-
-		// Iteratively approximate from a nonzero starting point
-		initialInUnit = +initial || 1;
-
-		while ( maxIterations-- ) {
-
-			// Evaluate and update our best guess (doubling guesses that zero out).
-			// Finish if the scale equals or crosses 1 (making the old*new product non-positive).
-			jQuery.style( elem, prop, initialInUnit + unit );
-			if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) {
-				maxIterations = 0;
-			}
-			initialInUnit = initialInUnit / scale;
-
-		}
-
-		initialInUnit = initialInUnit * 2;
-		jQuery.style( elem, prop, initialInUnit + unit );
-
-		// Make sure we update the tween properties later on
-		valueParts = valueParts || [];
-	}
-
-	if ( valueParts ) {
-		initialInUnit = +initialInUnit || +initial || 0;
-
-		// Apply relative offset (+=/-=) if specified
-		adjusted = valueParts[ 1 ] ?
-			initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] :
-			+valueParts[ 2 ];
-		if ( tween ) {
-			tween.unit = unit;
-			tween.start = initialInUnit;
-			tween.end = adjusted;
-		}
-	}
-	return adjusted;
-}
-
-
-var defaultDisplayMap = {};
-
-function getDefaultDisplay( elem ) {
-	var temp,
-		doc = elem.ownerDocument,
-		nodeName = elem.nodeName,
-		display = defaultDisplayMap[ nodeName ];
-
-	if ( display ) {
-		return display;
-	}
-
-	temp = doc.body.appendChild( doc.createElement( nodeName ) );
-	display = jQuery.css( temp, "display" );
-
-	temp.parentNode.removeChild( temp );
-
-	if ( display === "none" ) {
-		display = "block";
-	}
-	defaultDisplayMap[ nodeName ] = display;
-
-	return display;
-}
-
-function showHide( elements, show ) {
-	var display, elem,
-		values = [],
-		index = 0,
-		length = elements.length;
-
-	// Determine new display value for elements that need to change
-	for ( ; index < length; index++ ) {
-		elem = elements[ index ];
-		if ( !elem.style ) {
-			continue;
-		}
-
-		display = elem.style.display;
-		if ( show ) {
-
-			// Since we force visibility upon cascade-hidden elements, an immediate (and slow)
-			// check is required in this first loop unless we have a nonempty display value (either
-			// inline or about-to-be-restored)
-			if ( display === "none" ) {
-				values[ index ] = dataPriv.get( elem, "display" ) || null;
-				if ( !values[ index ] ) {
-					elem.style.display = "";
-				}
-			}
-			if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) {
-				values[ index ] = getDefaultDisplay( elem );
-			}
-		} else {
-			if ( display !== "none" ) {
-				values[ index ] = "none";
-
-				// Remember what we're overwriting
-				dataPriv.set( elem, "display", display );
-			}
-		}
-	}
-
-	// Set the display of the elements in a second loop to avoid constant reflow
-	for ( index = 0; index < length; index++ ) {
-		if ( values[ index ] != null ) {
-			elements[ index ].style.display = values[ index ];
-		}
-	}
-
-	return elements;
-}
-
-jQuery.fn.extend( {
-	show: function() {
-		return showHide( this, true );
-	},
-	hide: function() {
-		return showHide( this );
-	},
-	toggle: function( state ) {
-		if ( typeof state === "boolean" ) {
-			return state ? this.show() : this.hide();
-		}
-
-		return this.each( function() {
-			if ( isHiddenWithinTree( this ) ) {
-				jQuery( this ).show();
-			} else {
-				jQuery( this ).hide();
-			}
-		} );
-	}
-} );
-var rcheckableType = ( /^(?:checkbox|radio)$/i );
-
-var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i );
-
-var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i );
-
-
-
-( function() {
-	var fragment = document.createDocumentFragment(),
-		div = fragment.appendChild( document.createElement( "div" ) ),
-		input = document.createElement( "input" );
-
-	// Support: Android 4.0 - 4.3 only
-	// Check state lost if the name is set (#11217)
-	// Support: Windows Web Apps (WWA)
-	// `name` and `type` must use .setAttribute for WWA (#14901)
-	input.setAttribute( "type", "radio" );
-	input.setAttribute( "checked", "checked" );
-	input.setAttribute( "name", "t" );
-
-	div.appendChild( input );
-
-	// Support: Android <=4.1 only
-	// Older WebKit doesn't clone checked state correctly in fragments
-	support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked;
-
-	// Support: IE <=11 only
-	// Make sure textarea (and checkbox) defaultValue is properly cloned
-	div.innerHTML = "<textarea>x</textarea>";
-	support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue;
-
-	// Support: IE <=9 only
-	// IE <=9 replaces <option> tags with their contents when inserted outside of
-	// the select element.
-	div.innerHTML = "<option></option>";
-	support.option = !!div.lastChild;
-} )();
-
-
-// We have to close these tags to support XHTML (#13200)
-var wrapMap = {
-
-	// XHTML parsers do not magically insert elements in the
-	// same way that tag soup parsers do. So we cannot shorten
-	// this by omitting <tbody> or other required elements.
-	thead: [ 1, "<table>", "</table>" ],
-	col: [ 2, "<table><colgroup>", "</colgroup></table>" ],
-	tr: [ 2, "<table><tbody>", "</tbody></table>" ],
-	td: [ 3, "<table><tbody><tr>", "</tr></tbody></table>" ],
-
-	_default: [ 0, "", "" ]
-};
-
-wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead;
-wrapMap.th = wrapMap.td;
-
-// Support: IE <=9 only
-if ( !support.option ) {
-	wrapMap.optgroup = wrapMap.option = [ 1, "<select multiple='multiple'>", "</select>" ];
-}
-
-
-function getAll( context, tag ) {
-
-	// Support: IE <=9 - 11 only
-	// Use typeof to avoid zero-argument method invocation on host objects (#15151)
-	var ret;
-
-	if ( typeof context.getElementsByTagName !== "undefined" ) {
-		ret = context.getElementsByTagName( tag || "*" );
-
-	} else if ( typeof context.querySelectorAll !== "undefined" ) {
-		ret = context.querySelectorAll( tag || "*" );
-
-	} else {
-		ret = [];
-	}
-
-	if ( tag === undefined || tag && nodeName( context, tag ) ) {
-		return jQuery.merge( [ context ], ret );
-	}
-
-	return ret;
-}
-
-
-// Mark scripts as having already been evaluated
-function setGlobalEval( elems, refElements ) {
-	var i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		dataPriv.set(
-			elems[ i ],
-			"globalEval",
-			!refElements || dataPriv.get( refElements[ i ], "globalEval" )
-		);
-	}
-}
-
-
-var rhtml = /<|&#?\w+;/;
-
-function buildFragment( elems, context, scripts, selection, ignored ) {
-	var elem, tmp, tag, wrap, attached, j,
-		fragment = context.createDocumentFragment(),
-		nodes = [],
-		i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		elem = elems[ i ];
-
-		if ( elem || elem === 0 ) {
-
-			// Add nodes directly
-			if ( toType( elem ) === "object" ) {
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem );
-
-			// Convert non-html into a text node
-			} else if ( !rhtml.test( elem ) ) {
-				nodes.push( context.createTextNode( elem ) );
-
-			// Convert html into DOM nodes
-			} else {
-				tmp = tmp || fragment.appendChild( context.createElement( "div" ) );
-
-				// Deserialize a standard representation
-				tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase();
-				wrap = wrapMap[ tag ] || wrapMap._default;
-				tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ];
-
-				// Descend through wrappers to the right content
-				j = wrap[ 0 ];
-				while ( j-- ) {
-					tmp = tmp.lastChild;
-				}
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, tmp.childNodes );
-
-				// Remember the top-level container
-				tmp = fragment.firstChild;
-
-				// Ensure the created nodes are orphaned (#12392)
-				tmp.textContent = "";
-			}
-		}
-	}
-
-	// Remove wrapper from fragment
-	fragment.textContent = "";
-
-	i = 0;
-	while ( ( elem = nodes[ i++ ] ) ) {
-
-		// Skip elements already in the context collection (trac-4087)
-		if ( selection && jQuery.inArray( elem, selection ) > -1 ) {
-			if ( ignored ) {
-				ignored.push( elem );
-			}
-			continue;
-		}
-
-		attached = isAttached( elem );
-
-		// Append to fragment
-		tmp = getAll( fragment.appendChild( elem ), "script" );
-
-		// Preserve script evaluation history
-		if ( attached ) {
-			setGlobalEval( tmp );
-		}
-
-		// Capture executables
-		if ( scripts ) {
-			j = 0;
-			while ( ( elem = tmp[ j++ ] ) ) {
-				if ( rscriptType.test( elem.type || "" ) ) {
-					scripts.push( elem );
-				}
-			}
-		}
-	}
-
-	return fragment;
-}
-
-
-var rtypenamespace = /^([^.]*)(?:\.(.+)|)/;
-
-function returnTrue() {
-	return true;
-}
-
-function returnFalse() {
-	return false;
-}
-
-// Support: IE <=9 - 11+
-// focus() and blur() are asynchronous, except when they are no-op.
-// So expect focus to be synchronous when the element is already active,
-// and blur to be synchronous when the element is not already active.
-// (focus and blur are always synchronous in other supported browsers,
-// this just defines when we can count on it).
-function expectSync( elem, type ) {
-	return ( elem === safeActiveElement() ) === ( type === "focus" );
-}
-
-// Support: IE <=9 only
-// Accessing document.activeElement can throw unexpectedly
-// https://bugs.jquery.com/ticket/13393
-function safeActiveElement() {
-	try {
-		return document.activeElement;
-	} catch ( err ) { }
-}
-
-function on( elem, types, selector, data, fn, one ) {
-	var origFn, type;
-
-	// Types can be a map of types/handlers
-	if ( typeof types === "object" ) {
-
-		// ( types-Object, selector, data )
-		if ( typeof selector !== "string" ) {
-
-			// ( types-Object, data )
-			data = data || selector;
-			selector = undefined;
-		}
-		for ( type in types ) {
-			on( elem, type, selector, data, types[ type ], one );
-		}
-		return elem;
-	}
-
-	if ( data == null && fn == null ) {
-
-		// ( types, fn )
-		fn = selector;
-		data = selector = undefined;
-	} else if ( fn == null ) {
-		if ( typeof selector === "string" ) {
-
-			// ( types, selector, fn )
-			fn = data;
-			data = undefined;
-		} else {
-
-			// ( types, data, fn )
-			fn = data;
-			data = selector;
-			selector = undefined;
-		}
-	}
-	if ( fn === false ) {
-		fn = returnFalse;
-	} else if ( !fn ) {
-		return elem;
-	}
-
-	if ( one === 1 ) {
-		origFn = fn;
-		fn = function( event ) {
-
-			// Can use an empty set, since event contains the info
-			jQuery().off( event );
-			return origFn.apply( this, arguments );
-		};
-
-		// Use same guid so caller can remove using origFn
-		fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ );
-	}
-	return elem.each( function() {
-		jQuery.event.add( this, types, fn, data, selector );
-	} );
-}
-
-/*
- * Helper functions for managing events -- not part of the public interface.
- * Props to Dean Edwards' addEvent library for many of the ideas.
- */
-jQuery.event = {
-
-	global: {},
-
-	add: function( elem, types, handler, data, selector ) {
-
-		var handleObjIn, eventHandle, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.get( elem );
-
-		// Only attach events to objects that accept data
-		if ( !acceptData( elem ) ) {
-			return;
-		}
-
-		// Caller can pass in an object of custom data in lieu of the handler
-		if ( handler.handler ) {
-			handleObjIn = handler;
-			handler = handleObjIn.handler;
-			selector = handleObjIn.selector;
-		}
-
-		// Ensure that invalid selectors throw exceptions at attach time
-		// Evaluate against documentElement in case elem is a non-element node (e.g., document)
-		if ( selector ) {
-			jQuery.find.matchesSelector( documentElement, selector );
-		}
-
-		// Make sure that the handler has a unique ID, used to find/remove it later
-		if ( !handler.guid ) {
-			handler.guid = jQuery.guid++;
-		}
-
-		// Init the element's event structure and main handler, if this is the first
-		if ( !( events = elemData.events ) ) {
-			events = elemData.events = Object.create( null );
-		}
-		if ( !( eventHandle = elemData.handle ) ) {
-			eventHandle = elemData.handle = function( e ) {
-
-				// Discard the second event of a jQuery.event.trigger() and
-				// when an event is called after a page has unloaded
-				return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ?
-					jQuery.event.dispatch.apply( elem, arguments ) : undefined;
-			};
-		}
-
-		// Handle multiple events separated by a space
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// There *must* be a type, no attaching namespace-only handlers
-			if ( !type ) {
-				continue;
-			}
-
-			// If event changes its type, use the special event handlers for the changed type
-			special = jQuery.event.special[ type ] || {};
-
-			// If selector defined, determine special event api type, otherwise given type
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-
-			// Update special based on newly reset type
-			special = jQuery.event.special[ type ] || {};
-
-			// handleObj is passed to all event handlers
-			handleObj = jQuery.extend( {
-				type: type,
-				origType: origType,
-				data: data,
-				handler: handler,
-				guid: handler.guid,
-				selector: selector,
-				needsContext: selector && jQuery.expr.match.needsContext.test( selector ),
-				namespace: namespaces.join( "." )
-			}, handleObjIn );
-
-			// Init the event handler queue if we're the first
-			if ( !( handlers = events[ type ] ) ) {
-				handlers = events[ type ] = [];
-				handlers.delegateCount = 0;
-
-				// Only use addEventListener if the special events handler returns false
-				if ( !special.setup ||
-					special.setup.call( elem, data, namespaces, eventHandle ) === false ) {
-
-					if ( elem.addEventListener ) {
-						elem.addEventListener( type, eventHandle );
-					}
-				}
-			}
-
-			if ( special.add ) {
-				special.add.call( elem, handleObj );
-
-				if ( !handleObj.handler.guid ) {
-					handleObj.handler.guid = handler.guid;
-				}
-			}
-
-			// Add to the element's handler list, delegates in front
-			if ( selector ) {
-				handlers.splice( handlers.delegateCount++, 0, handleObj );
-			} else {
-				handlers.push( handleObj );
-			}
-
-			// Keep track of which events have ever been used, for event optimization
-			jQuery.event.global[ type ] = true;
-		}
-
-	},
-
-	// Detach an event or set of events from an element
-	remove: function( elem, types, handler, selector, mappedTypes ) {
-
-		var j, origCount, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.hasData( elem ) && dataPriv.get( elem );
-
-		if ( !elemData || !( events = elemData.events ) ) {
-			return;
-		}
-
-		// Once for each type.namespace in types; type may be omitted
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// Unbind all events (on this namespace, if provided) for the element
-			if ( !type ) {
-				for ( type in events ) {
-					jQuery.event.remove( elem, type + types[ t ], handler, selector, true );
-				}
-				continue;
-			}
-
-			special = jQuery.event.special[ type ] || {};
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-			handlers = events[ type ] || [];
-			tmp = tmp[ 2 ] &&
-				new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" );
-
-			// Remove matching events
-			origCount = j = handlers.length;
-			while ( j-- ) {
-				handleObj = handlers[ j ];
-
-				if ( ( mappedTypes || origType === handleObj.origType ) &&
-					( !handler || handler.guid === handleObj.guid ) &&
-					( !tmp || tmp.test( handleObj.namespace ) ) &&
-					( !selector || selector === handleObj.selector ||
-						selector === "**" && handleObj.selector ) ) {
-					handlers.splice( j, 1 );
-
-					if ( handleObj.selector ) {
-						handlers.delegateCount--;
-					}
-					if ( special.remove ) {
-						special.remove.call( elem, handleObj );
-					}
-				}
-			}
-
-			// Remove generic event handler if we removed something and no more handlers exist
-			// (avoids potential for endless recursion during removal of special event handlers)
-			if ( origCount && !handlers.length ) {
-				if ( !special.teardown ||
-					special.teardown.call( elem, namespaces, elemData.handle ) === false ) {
-
-					jQuery.removeEvent( elem, type, elemData.handle );
-				}
-
-				delete events[ type ];
-			}
-		}
-
-		// Remove data and the expando if it's no longer used
-		if ( jQuery.isEmptyObject( events ) ) {
-			dataPriv.remove( elem, "handle events" );
-		}
-	},
-
-	dispatch: function( nativeEvent ) {
-
-		var i, j, ret, matched, handleObj, handlerQueue,
-			args = new Array( arguments.length ),
-
-			// Make a writable jQuery.Event from the native event object
-			event = jQuery.event.fix( nativeEvent ),
-
-			handlers = (
-				dataPriv.get( this, "events" ) || Object.create( null )
-			)[ event.type ] || [],
-			special = jQuery.event.special[ event.type ] || {};
-
-		// Use the fix-ed jQuery.Event rather than the (read-only) native event
-		args[ 0 ] = event;
-
-		for ( i = 1; i < arguments.length; i++ ) {
-			args[ i ] = arguments[ i ];
-		}
-
-		event.delegateTarget = this;
-
-		// Call the preDispatch hook for the mapped type, and let it bail if desired
-		if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) {
-			return;
-		}
-
-		// Determine handlers
-		handlerQueue = jQuery.event.handlers.call( this, event, handlers );
-
-		// Run delegates first; they may want to stop propagation beneath us
-		i = 0;
-		while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) {
-			event.currentTarget = matched.elem;
-
-			j = 0;
-			while ( ( handleObj = matched.handlers[ j++ ] ) &&
-				!event.isImmediatePropagationStopped() ) {
-
-				// If the event is namespaced, then each handler is only invoked if it is
-				// specially universal or its namespaces are a superset of the event's.
-				if ( !event.rnamespace || handleObj.namespace === false ||
-					event.rnamespace.test( handleObj.namespace ) ) {
-
-					event.handleObj = handleObj;
-					event.data = handleObj.data;
-
-					ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle ||
-						handleObj.handler ).apply( matched.elem, args );
-
-					if ( ret !== undefined ) {
-						if ( ( event.result = ret ) === false ) {
-							event.preventDefault();
-							event.stopPropagation();
-						}
-					}
-				}
-			}
-		}
-
-		// Call the postDispatch hook for the mapped type
-		if ( special.postDispatch ) {
-			special.postDispatch.call( this, event );
-		}
-
-		return event.result;
-	},
-
-	handlers: function( event, handlers ) {
-		var i, handleObj, sel, matchedHandlers, matchedSelectors,
-			handlerQueue = [],
-			delegateCount = handlers.delegateCount,
-			cur = event.target;
-
-		// Find delegate handlers
-		if ( delegateCount &&
-
-			// Support: IE <=9
-			// Black-hole SVG <use> instance trees (trac-13180)
-			cur.nodeType &&
-
-			// Support: Firefox <=42
-			// Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861)
-			// https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click
-			// Support: IE 11 only
-			// ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343)
-			!( event.type === "click" && event.button >= 1 ) ) {
-
-			for ( ; cur !== this; cur = cur.parentNode || this ) {
-
-				// Don't check non-elements (#13208)
-				// Don't process clicks on disabled elements (#6911, #8165, #11382, #11764)
-				if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) {
-					matchedHandlers = [];
-					matchedSelectors = {};
-					for ( i = 0; i < delegateCount; i++ ) {
-						handleObj = handlers[ i ];
-
-						// Don't conflict with Object.prototype properties (#13203)
-						sel = handleObj.selector + " ";
-
-						if ( matchedSelectors[ sel ] === undefined ) {
-							matchedSelectors[ sel ] = handleObj.needsContext ?
-								jQuery( sel, this ).index( cur ) > -1 :
-								jQuery.find( sel, this, null, [ cur ] ).length;
-						}
-						if ( matchedSelectors[ sel ] ) {
-							matchedHandlers.push( handleObj );
-						}
-					}
-					if ( matchedHandlers.length ) {
-						handlerQueue.push( { elem: cur, handlers: matchedHandlers } );
-					}
-				}
-			}
-		}
-
-		// Add the remaining (directly-bound) handlers
-		cur = this;
-		if ( delegateCount < handlers.length ) {
-			handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } );
-		}
-
-		return handlerQueue;
-	},
-
-	addProp: function( name, hook ) {
-		Object.defineProperty( jQuery.Event.prototype, name, {
-			enumerable: true,
-			configurable: true,
-
-			get: isFunction( hook ) ?
-				function() {
-					if ( this.originalEvent ) {
-						return hook( this.originalEvent );
-					}
-				} :
-				function() {
-					if ( this.originalEvent ) {
-						return this.originalEvent[ name ];
-					}
-				},
-
-			set: function( value ) {
-				Object.defineProperty( this, name, {
-					enumerable: true,
-					configurable: true,
-					writable: true,
-					value: value
-				} );
-			}
-		} );
-	},
-
-	fix: function( originalEvent ) {
-		return originalEvent[ jQuery.expando ] ?
-			originalEvent :
-			new jQuery.Event( originalEvent );
-	},
-
-	special: {
-		load: {
-
-			// Prevent triggered image.load events from bubbling to window.load
-			noBubble: true
-		},
-		click: {
-
-			// Utilize native event to ensure correct state for checkable inputs
-			setup: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Claim the first handler
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					// dataPriv.set( el, "click", ... )
-					leverageNative( el, "click", returnTrue );
-				}
-
-				// Return false to allow normal processing in the caller
-				return false;
-			},
-			trigger: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Force setup before triggering a click
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					leverageNative( el, "click" );
-				}
-
-				// Return non-false to allow normal event-path propagation
-				return true;
-			},
-
-			// For cross-browser consistency, suppress native .click() on links
-			// Also prevent it if we're currently inside a leveraged native-event stack
-			_default: function( event ) {
-				var target = event.target;
-				return rcheckableType.test( target.type ) &&
-					target.click && nodeName( target, "input" ) &&
-					dataPriv.get( target, "click" ) ||
-					nodeName( target, "a" );
-			}
-		},
-
-		beforeunload: {
-			postDispatch: function( event ) {
-
-				// Support: Firefox 20+
-				// Firefox doesn't alert if the returnValue field is not set.
-				if ( event.result !== undefined && event.originalEvent ) {
-					event.originalEvent.returnValue = event.result;
-				}
-			}
-		}
-	}
-};
-
-// Ensure the presence of an event listener that handles manually-triggered
-// synthetic events by interrupting progress until reinvoked in response to
-// *native* events that it fires directly, ensuring that state changes have
-// already occurred before other listeners are invoked.
-function leverageNative( el, type, expectSync ) {
-
-	// Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add
-	if ( !expectSync ) {
-		if ( dataPriv.get( el, type ) === undefined ) {
-			jQuery.event.add( el, type, returnTrue );
-		}
-		return;
-	}
-
-	// Register the controller as a special universal handler for all event namespaces
-	dataPriv.set( el, type, false );
-	jQuery.event.add( el, type, {
-		namespace: false,
-		handler: function( event ) {
-			var notAsync, result,
-				saved = dataPriv.get( this, type );
-
-			if ( ( event.isTrigger & 1 ) && this[ type ] ) {
-
-				// Interrupt processing of the outer synthetic .trigger()ed event
-				// Saved data should be false in such cases, but might be a leftover capture object
-				// from an async native handler (gh-4350)
-				if ( !saved.length ) {
-
-					// Store arguments for use when handling the inner native event
-					// There will always be at least one argument (an event object), so this array
-					// will not be confused with a leftover capture object.
-					saved = slice.call( arguments );
-					dataPriv.set( this, type, saved );
-
-					// Trigger the native event and capture its result
-					// Support: IE <=9 - 11+
-					// focus() and blur() are asynchronous
-					notAsync = expectSync( this, type );
-					this[ type ]();
-					result = dataPriv.get( this, type );
-					if ( saved !== result || notAsync ) {
-						dataPriv.set( this, type, false );
-					} else {
-						result = {};
-					}
-					if ( saved !== result ) {
-
-						// Cancel the outer synthetic event
-						event.stopImmediatePropagation();
-						event.preventDefault();
-
-						// Support: Chrome 86+
-						// In Chrome, if an element having a focusout handler is blurred by
-						// clicking outside of it, it invokes the handler synchronously. If
-						// that handler calls `.remove()` on the element, the data is cleared,
-						// leaving `result` undefined. We need to guard against this.
-						return result && result.value;
-					}
-
-				// If this is an inner synthetic event for an event with a bubbling surrogate
-				// (focus or blur), assume that the surrogate already propagated from triggering the
-				// native event and prevent that from happening again here.
-				// This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the
-				// bubbling surrogate propagates *after* the non-bubbling base), but that seems
-				// less bad than duplication.
-				} else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) {
-					event.stopPropagation();
-				}
-
-			// If this is a native event triggered above, everything is now in order
-			// Fire an inner synthetic event with the original arguments
-			} else if ( saved.length ) {
-
-				// ...and capture the result
-				dataPriv.set( this, type, {
-					value: jQuery.event.trigger(
-
-						// Support: IE <=9 - 11+
-						// Extend with the prototype to reset the above stopImmediatePropagation()
-						jQuery.extend( saved[ 0 ], jQuery.Event.prototype ),
-						saved.slice( 1 ),
-						this
-					)
-				} );
-
-				// Abort handling of the native event
-				event.stopImmediatePropagation();
-			}
-		}
-	} );
-}
-
-jQuery.removeEvent = function( elem, type, handle ) {
-
-	// This "if" is needed for plain objects
-	if ( elem.removeEventListener ) {
-		elem.removeEventListener( type, handle );
-	}
-};
-
-jQuery.Event = function( src, props ) {
-
-	// Allow instantiation without the 'new' keyword
-	if ( !( this instanceof jQuery.Event ) ) {
-		return new jQuery.Event( src, props );
-	}
-
-	// Event object
-	if ( src && src.type ) {
-		this.originalEvent = src;
-		this.type = src.type;
-
-		// Events bubbling up the document may have been marked as prevented
-		// by a handler lower down the tree; reflect the correct value.
-		this.isDefaultPrevented = src.defaultPrevented ||
-				src.defaultPrevented === undefined &&
-
-				// Support: Android <=2.3 only
-				src.returnValue === false ?
-			returnTrue :
-			returnFalse;
-
-		// Create target properties
-		// Support: Safari <=6 - 7 only
-		// Target should not be a text node (#504, #13143)
-		this.target = ( src.target && src.target.nodeType === 3 ) ?
-			src.target.parentNode :
-			src.target;
-
-		this.currentTarget = src.currentTarget;
-		this.relatedTarget = src.relatedTarget;
-
-	// Event type
-	} else {
-		this.type = src;
-	}
-
-	// Put explicitly provided properties onto the event object
-	if ( props ) {
-		jQuery.extend( this, props );
-	}
-
-	// Create a timestamp if incoming event doesn't have one
-	this.timeStamp = src && src.timeStamp || Date.now();
-
-	// Mark it as fixed
-	this[ jQuery.expando ] = true;
-};
-
-// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding
-// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html
-jQuery.Event.prototype = {
-	constructor: jQuery.Event,
-	isDefaultPrevented: returnFalse,
-	isPropagationStopped: returnFalse,
-	isImmediatePropagationStopped: returnFalse,
-	isSimulated: false,
-
-	preventDefault: function() {
-		var e = this.originalEvent;
-
-		this.isDefaultPrevented = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.preventDefault();
-		}
-	},
-	stopPropagation: function() {
-		var e = this.originalEvent;
-
-		this.isPropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopPropagation();
-		}
-	},
-	stopImmediatePropagation: function() {
-		var e = this.originalEvent;
-
-		this.isImmediatePropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopImmediatePropagation();
-		}
-
-		this.stopPropagation();
-	}
-};
-
-// Includes all common event props including KeyEvent and MouseEvent specific props
-jQuery.each( {
-	altKey: true,
-	bubbles: true,
-	cancelable: true,
-	changedTouches: true,
-	ctrlKey: true,
-	detail: true,
-	eventPhase: true,
-	metaKey: true,
-	pageX: true,
-	pageY: true,
-	shiftKey: true,
-	view: true,
-	"char": true,
-	code: true,
-	charCode: true,
-	key: true,
-	keyCode: true,
-	button: true,
-	buttons: true,
-	clientX: true,
-	clientY: true,
-	offsetX: true,
-	offsetY: true,
-	pointerId: true,
-	pointerType: true,
-	screenX: true,
-	screenY: true,
-	targetTouches: true,
-	toElement: true,
-	touches: true,
-	which: true
-}, jQuery.event.addProp );
-
-jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) {
-	jQuery.event.special[ type ] = {
-
-		// Utilize native event if possible so blur/focus sequence is correct
-		setup: function() {
-
-			// Claim the first handler
-			// dataPriv.set( this, "focus", ... )
-			// dataPriv.set( this, "blur", ... )
-			leverageNative( this, type, expectSync );
-
-			// Return false to allow normal processing in the caller
-			return false;
-		},
-		trigger: function() {
-
-			// Force setup before trigger
-			leverageNative( this, type );
-
-			// Return non-false to allow normal event-path propagation
-			return true;
-		},
-
-		// Suppress native focus or blur as it's already being fired
-		// in leverageNative.
-		_default: function() {
-			return true;
-		},
-
-		delegateType: delegateType
-	};
-} );
-
-// Create mouseenter/leave events using mouseover/out and event-time checks
-// so that event delegation works in jQuery.
-// Do the same for pointerenter/pointerleave and pointerover/pointerout
-//
-// Support: Safari 7 only
-// Safari sends mouseenter too often; see:
-// https://bugs.chromium.org/p/chromium/issues/detail?id=470258
-// for the description of the bug (it existed in older Chrome versions as well).
-jQuery.each( {
-	mouseenter: "mouseover",
-	mouseleave: "mouseout",
-	pointerenter: "pointerover",
-	pointerleave: "pointerout"
-}, function( orig, fix ) {
-	jQuery.event.special[ orig ] = {
-		delegateType: fix,
-		bindType: fix,
-
-		handle: function( event ) {
-			var ret,
-				target = this,
-				related = event.relatedTarget,
-				handleObj = event.handleObj;
-
-			// For mouseenter/leave call the handler if related is outside the target.
-			// NB: No relatedTarget if the mouse left/entered the browser window
-			if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) {
-				event.type = handleObj.origType;
-				ret = handleObj.handler.apply( this, arguments );
-				event.type = fix;
-			}
-			return ret;
-		}
-	};
-} );
-
-jQuery.fn.extend( {
-
-	on: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn );
-	},
-	one: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn, 1 );
-	},
-	off: function( types, selector, fn ) {
-		var handleObj, type;
-		if ( types && types.preventDefault && types.handleObj ) {
-
-			// ( event )  dispatched jQuery.Event
-			handleObj = types.handleObj;
-			jQuery( types.delegateTarget ).off(
-				handleObj.namespace ?
-					handleObj.origType + "." + handleObj.namespace :
-					handleObj.origType,
-				handleObj.selector,
-				handleObj.handler
-			);
-			return this;
-		}
-		if ( typeof types === "object" ) {
-
-			// ( types-object [, selector] )
-			for ( type in types ) {
-				this.off( type, selector, types[ type ] );
-			}
-			return this;
-		}
-		if ( selector === false || typeof selector === "function" ) {
-
-			// ( types [, fn] )
-			fn = selector;
-			selector = undefined;
-		}
-		if ( fn === false ) {
-			fn = returnFalse;
-		}
-		return this.each( function() {
-			jQuery.event.remove( this, types, fn, selector );
-		} );
-	}
-} );
-
-
-var
-
-	// Support: IE <=10 - 11, Edge 12 - 13 only
-	// In IE/Edge using regex groups here causes severe slowdowns.
-	// See https://connect.microsoft.com/IE/feedback/details/1736512/
-	rnoInnerhtml = /<script|<style|<link/i,
-
-	// checked="checked" or checked
-	rchecked = /checked\s*(?:[^=]|=\s*.checked.)/i,
-	rcleanScript = /^\s*<!(?:\[CDATA\[|--)|(?:\]\]|--)>\s*$/g;
-
-// Prefer a tbody over its parent table for containing new rows
-function manipulationTarget( elem, content ) {
-	if ( nodeName( elem, "table" ) &&
-		nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) {
-
-		return jQuery( elem ).children( "tbody" )[ 0 ] || elem;
-	}
-
-	return elem;
-}
-
-// Replace/restore the type attribute of script elements for safe DOM manipulation
-function disableScript( elem ) {
-	elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type;
-	return elem;
-}
-function restoreScript( elem ) {
-	if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) {
-		elem.type = elem.type.slice( 5 );
-	} else {
-		elem.removeAttribute( "type" );
-	}
-
-	return elem;
-}
-
-function cloneCopyEvent( src, dest ) {
-	var i, l, type, pdataOld, udataOld, udataCur, events;
-
-	if ( dest.nodeType !== 1 ) {
-		return;
-	}
-
-	// 1. Copy private data: events, handlers, etc.
-	if ( dataPriv.hasData( src ) ) {
-		pdataOld = dataPriv.get( src );
-		events = pdataOld.events;
-
-		if ( events ) {
-			dataPriv.remove( dest, "handle events" );
-
-			for ( type in events ) {
-				for ( i = 0, l = events[ type ].length; i < l; i++ ) {
-					jQuery.event.add( dest, type, events[ type ][ i ] );
-				}
-			}
-		}
-	}
-
-	// 2. Copy user data
-	if ( dataUser.hasData( src ) ) {
-		udataOld = dataUser.access( src );
-		udataCur = jQuery.extend( {}, udataOld );
-
-		dataUser.set( dest, udataCur );
-	}
-}
-
-// Fix IE bugs, see support tests
-function fixInput( src, dest ) {
-	var nodeName = dest.nodeName.toLowerCase();
-
-	// Fails to persist the checked state of a cloned checkbox or radio button.
-	if ( nodeName === "input" && rcheckableType.test( src.type ) ) {
-		dest.checked = src.checked;
-
-	// Fails to return the selected option to the default selected state when cloning options
-	} else if ( nodeName === "input" || nodeName === "textarea" ) {
-		dest.defaultValue = src.defaultValue;
-	}
-}
-
-function domManip( collection, args, callback, ignored ) {
-
-	// Flatten any nested arrays
-	args = flat( args );
-
-	var fragment, first, scripts, hasScripts, node, doc,
-		i = 0,
-		l = collection.length,
-		iNoClone = l - 1,
-		value = args[ 0 ],
-		valueIsFunction = isFunction( value );
-
-	// We can't cloneNode fragments that contain checked, in WebKit
-	if ( valueIsFunction ||
-			( l > 1 && typeof value === "string" &&
-				!support.checkClone && rchecked.test( value ) ) ) {
-		return collection.each( function( index ) {
-			var self = collection.eq( index );
-			if ( valueIsFunction ) {
-				args[ 0 ] = value.call( this, index, self.html() );
-			}
-			domManip( self, args, callback, ignored );
-		} );
-	}
-
-	if ( l ) {
-		fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored );
-		first = fragment.firstChild;
-
-		if ( fragment.childNodes.length === 1 ) {
-			fragment = first;
-		}
-
-		// Require either new content or an interest in ignored elements to invoke the callback
-		if ( first || ignored ) {
-			scripts = jQuery.map( getAll( fragment, "script" ), disableScript );
-			hasScripts = scripts.length;
-
-			// Use the original fragment for the last item
-			// instead of the first because it can end up
-			// being emptied incorrectly in certain situations (#8070).
-			for ( ; i < l; i++ ) {
-				node = fragment;
-
-				if ( i !== iNoClone ) {
-					node = jQuery.clone( node, true, true );
-
-					// Keep references to cloned scripts for later restoration
-					if ( hasScripts ) {
-
-						// Support: Android <=4.0 only, PhantomJS 1 only
-						// push.apply(_, arraylike) throws on ancient WebKit
-						jQuery.merge( scripts, getAll( node, "script" ) );
-					}
-				}
-
-				callback.call( collection[ i ], node, i );
-			}
-
-			if ( hasScripts ) {
-				doc = scripts[ scripts.length - 1 ].ownerDocument;
-
-				// Reenable scripts
-				jQuery.map( scripts, restoreScript );
-
-				// Evaluate executable scripts on first document insertion
-				for ( i = 0; i < hasScripts; i++ ) {
-					node = scripts[ i ];
-					if ( rscriptType.test( node.type || "" ) &&
-						!dataPriv.access( node, "globalEval" ) &&
-						jQuery.contains( doc, node ) ) {
-
-						if ( node.src && ( node.type || "" ).toLowerCase()  !== "module" ) {
-
-							// Optional AJAX dependency, but won't run scripts if not present
-							if ( jQuery._evalUrl && !node.noModule ) {
-								jQuery._evalUrl( node.src, {
-									nonce: node.nonce || node.getAttribute( "nonce" )
-								}, doc );
-							}
-						} else {
-							DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc );
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return collection;
-}
-
-function remove( elem, selector, keepData ) {
-	var node,
-		nodes = selector ? jQuery.filter( selector, elem ) : elem,
-		i = 0;
-
-	for ( ; ( node = nodes[ i ] ) != null; i++ ) {
-		if ( !keepData && node.nodeType === 1 ) {
-			jQuery.cleanData( getAll( node ) );
-		}
-
-		if ( node.parentNode ) {
-			if ( keepData && isAttached( node ) ) {
-				setGlobalEval( getAll( node, "script" ) );
-			}
-			node.parentNode.removeChild( node );
-		}
-	}
-
-	return elem;
-}
-
-jQuery.extend( {
-	htmlPrefilter: function( html ) {
-		return html;
-	},
-
-	clone: function( elem, dataAndEvents, deepDataAndEvents ) {
-		var i, l, srcElements, destElements,
-			clone = elem.cloneNode( true ),
-			inPage = isAttached( elem );
-
-		// Fix IE cloning issues
-		if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) &&
-				!jQuery.isXMLDoc( elem ) ) {
-
-			// We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2
-			destElements = getAll( clone );
-			srcElements = getAll( elem );
-
-			for ( i = 0, l = srcElements.length; i < l; i++ ) {
-				fixInput( srcElements[ i ], destElements[ i ] );
-			}
-		}
-
-		// Copy the events from the original to the clone
-		if ( dataAndEvents ) {
-			if ( deepDataAndEvents ) {
-				srcElements = srcElements || getAll( elem );
-				destElements = destElements || getAll( clone );
-
-				for ( i = 0, l = srcElements.length; i < l; i++ ) {
-					cloneCopyEvent( srcElements[ i ], destElements[ i ] );
-				}
-			} else {
-				cloneCopyEvent( elem, clone );
-			}
-		}
-
-		// Preserve script evaluation history
-		destElements = getAll( clone, "script" );
-		if ( destElements.length > 0 ) {
-			setGlobalEval( destElements, !inPage && getAll( elem, "script" ) );
-		}
-
-		// Return the cloned set
-		return clone;
-	},
-
-	cleanData: function( elems ) {
-		var data, elem, type,
-			special = jQuery.event.special,
-			i = 0;
-
-		for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) {
-			if ( acceptData( elem ) ) {
-				if ( ( data = elem[ dataPriv.expando ] ) ) {
-					if ( data.events ) {
-						for ( type in data.events ) {
-							if ( special[ type ] ) {
-								jQuery.event.remove( elem, type );
-
-							// This is a shortcut to avoid jQuery.event.remove's overhead
-							} else {
-								jQuery.removeEvent( elem, type, data.handle );
-							}
-						}
-					}
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataPriv.expando ] = undefined;
-				}
-				if ( elem[ dataUser.expando ] ) {
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataUser.expando ] = undefined;
-				}
-			}
-		}
-	}
-} );
-
-jQuery.fn.extend( {
-	detach: function( selector ) {
-		return remove( this, selector, true );
-	},
-
-	remove: function( selector ) {
-		return remove( this, selector );
-	},
-
-	text: function( value ) {
-		return access( this, function( value ) {
-			return value === undefined ?
-				jQuery.text( this ) :
-				this.empty().each( function() {
-					if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-						this.textContent = value;
-					}
-				} );
-		}, null, value, arguments.length );
-	},
-
-	append: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.appendChild( elem );
-			}
-		} );
-	},
-
-	prepend: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.insertBefore( elem, target.firstChild );
-			}
-		} );
-	},
-
-	before: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this );
-			}
-		} );
-	},
-
-	after: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this.nextSibling );
-			}
-		} );
-	},
-
-	empty: function() {
-		var elem,
-			i = 0;
-
-		for ( ; ( elem = this[ i ] ) != null; i++ ) {
-			if ( elem.nodeType === 1 ) {
-
-				// Prevent memory leaks
-				jQuery.cleanData( getAll( elem, false ) );
-
-				// Remove any remaining nodes
-				elem.textContent = "";
-			}
-		}
-
-		return this;
-	},
-
-	clone: function( dataAndEvents, deepDataAndEvents ) {
-		dataAndEvents = dataAndEvents == null ? false : dataAndEvents;
-		deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents;
-
-		return this.map( function() {
-			return jQuery.clone( this, dataAndEvents, deepDataAndEvents );
-		} );
-	},
-
-	html: function( value ) {
-		return access( this, function( value ) {
-			var elem = this[ 0 ] || {},
-				i = 0,
-				l = this.length;
-
-			if ( value === undefined && elem.nodeType === 1 ) {
-				return elem.innerHTML;
-			}
-
-			// See if we can take a shortcut and just use innerHTML
-			if ( typeof value === "string" && !rnoInnerhtml.test( value ) &&
-				!wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) {
-
-				value = jQuery.htmlPrefilter( value );
-
-				try {
-					for ( ; i < l; i++ ) {
-						elem = this[ i ] || {};
-
-						// Remove element nodes and prevent memory leaks
-						if ( elem.nodeType === 1 ) {
-							jQuery.cleanData( getAll( elem, false ) );
-							elem.innerHTML = value;
-						}
-					}
-
-					elem = 0;
-
-				// If using innerHTML throws an exception, use the fallback method
-				} catch ( e ) {}
-			}
-
-			if ( elem ) {
-				this.empty().append( value );
-			}
-		}, null, value, arguments.length );
-	},
-
-	replaceWith: function() {
-		var ignored = [];
-
-		// Make the changes, replacing each non-ignored context element with the new content
-		return domManip( this, arguments, function( elem ) {
-			var parent = this.parentNode;
-
-			if ( jQuery.inArray( this, ignored ) < 0 ) {
-				jQuery.cleanData( getAll( this ) );
-				if ( parent ) {
-					parent.replaceChild( elem, this );
-				}
-			}
-
-		// Force callback invocation
-		}, ignored );
-	}
-} );
-
-jQuery.each( {
-	appendTo: "append",
-	prependTo: "prepend",
-	insertBefore: "before",
-	insertAfter: "after",
-	replaceAll: "replaceWith"
-}, function( name, original ) {
-	jQuery.fn[ name ] = function( selector ) {
-		var elems,
-			ret = [],
-			insert = jQuery( selector ),
-			last = insert.length - 1,
-			i = 0;
-
-		for ( ; i <= last; i++ ) {
-			elems = i === last ? this : this.clone( true );
-			jQuery( insert[ i ] )[ original ]( elems );
-
-			// Support: Android <=4.0 only, PhantomJS 1 only
-			// .get() because push.apply(_, arraylike) throws on ancient WebKit
-			push.apply( ret, elems.get() );
-		}
-
-		return this.pushStack( ret );
-	};
-} );
-var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" );
-
-var getStyles = function( elem ) {
-
-		// Support: IE <=11 only, Firefox <=30 (#15098, #14150)
-		// IE throws on elements created in popups
-		// FF meanwhile throws on frame elements through "defaultView.getComputedStyle"
-		var view = elem.ownerDocument.defaultView;
-
-		if ( !view || !view.opener ) {
-			view = window;
-		}
-
-		return view.getComputedStyle( elem );
-	};
-
-var swap = function( elem, options, callback ) {
-	var ret, name,
-		old = {};
-
-	// Remember the old values, and insert the new ones
-	for ( name in options ) {
-		old[ name ] = elem.style[ name ];
-		elem.style[ name ] = options[ name ];
-	}
-
-	ret = callback.call( elem );
-
-	// Revert the old values
-	for ( name in options ) {
-		elem.style[ name ] = old[ name ];
-	}
-
-	return ret;
-};
-
-
-var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" );
-
-
-
-( function() {
-
-	// Executing both pixelPosition & boxSizingReliable tests require only one layout
-	// so they're executed at the same time to save the second computation.
-	function computeStyleTests() {
-
-		// This is a singleton, we need to execute it only once
-		if ( !div ) {
-			return;
-		}
-
-		container.style.cssText = "position:absolute;left:-11111px;width:60px;" +
-			"margin-top:1px;padding:0;border:0";
-		div.style.cssText =
-			"position:relative;display:block;box-sizing:border-box;overflow:scroll;" +
-			"margin:auto;border:1px;padding:1px;" +
-			"width:60%;top:1%";
-		documentElement.appendChild( container ).appendChild( div );
-
-		var divStyle = window.getComputedStyle( div );
-		pixelPositionVal = divStyle.top !== "1%";
-
-		// Support: Android 4.0 - 4.3 only, Firefox <=3 - 44
-		reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12;
-
-		// Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3
-		// Some styles come back with percentage values, even though they shouldn't
-		div.style.right = "60%";
-		pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36;
-
-		// Support: IE 9 - 11 only
-		// Detect misreporting of content dimensions for box-sizing:border-box elements
-		boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36;
-
-		// Support: IE 9 only
-		// Detect overflow:scroll screwiness (gh-3699)
-		// Support: Chrome <=64
-		// Don't get tricked when zoom affects offsetWidth (gh-4029)
-		div.style.position = "absolute";
-		scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12;
-
-		documentElement.removeChild( container );
-
-		// Nullify the div so it wouldn't be stored in the memory and
-		// it will also be a sign that checks already performed
-		div = null;
-	}
-
-	function roundPixelMeasures( measure ) {
-		return Math.round( parseFloat( measure ) );
-	}
-
-	var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal,
-		reliableTrDimensionsVal, reliableMarginLeftVal,
-		container = document.createElement( "div" ),
-		div = document.createElement( "div" );
-
-	// Finish early in limited (non-browser) environments
-	if ( !div.style ) {
-		return;
-	}
-
-	// Support: IE <=9 - 11 only
-	// Style of cloned element affects source element cloned (#8908)
-	div.style.backgroundClip = "content-box";
-	div.cloneNode( true ).style.backgroundClip = "";
-	support.clearCloneStyle = div.style.backgroundClip === "content-box";
-
-	jQuery.extend( support, {
-		boxSizingReliable: function() {
-			computeStyleTests();
-			return boxSizingReliableVal;
-		},
-		pixelBoxStyles: function() {
-			computeStyleTests();
-			return pixelBoxStylesVal;
-		},
-		pixelPosition: function() {
-			computeStyleTests();
-			return pixelPositionVal;
-		},
-		reliableMarginLeft: function() {
-			computeStyleTests();
-			return reliableMarginLeftVal;
-		},
-		scrollboxSize: function() {
-			computeStyleTests();
-			return scrollboxSizeVal;
-		},
-
-		// Support: IE 9 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Behavior in IE 9 is more subtle than in newer versions & it passes
-		// some versions of this test; make sure not to make it pass there!
-		//
-		// Support: Firefox 70+
-		// Only Firefox includes border widths
-		// in computed dimensions. (gh-4529)
-		reliableTrDimensions: function() {
-			var table, tr, trChild, trStyle;
-			if ( reliableTrDimensionsVal == null ) {
-				table = document.createElement( "table" );
-				tr = document.createElement( "tr" );
-				trChild = document.createElement( "div" );
-
-				table.style.cssText = "position:absolute;left:-11111px;border-collapse:separate";
-				tr.style.cssText = "border:1px solid";
-
-				// Support: Chrome 86+
-				// Height set through cssText does not get applied.
-				// Computed height then comes back as 0.
-				tr.style.height = "1px";
-				trChild.style.height = "9px";
-
-				// Support: Android 8 Chrome 86+
-				// In our bodyBackground.html iframe,
-				// display for all div elements is set to "inline",
-				// which causes a problem only in Android 8 Chrome 86.
-				// Ensuring the div is display: block
-				// gets around this issue.
-				trChild.style.display = "block";
-
-				documentElement
-					.appendChild( table )
-					.appendChild( tr )
-					.appendChild( trChild );
-
-				trStyle = window.getComputedStyle( tr );
-				reliableTrDimensionsVal = ( parseInt( trStyle.height, 10 ) +
-					parseInt( trStyle.borderTopWidth, 10 ) +
-					parseInt( trStyle.borderBottomWidth, 10 ) ) === tr.offsetHeight;
-
-				documentElement.removeChild( table );
-			}
-			return reliableTrDimensionsVal;
-		}
-	} );
-} )();
-
-
-function curCSS( elem, name, computed ) {
-	var width, minWidth, maxWidth, ret,
-
-		// Support: Firefox 51+
-		// Retrieving style before computed somehow
-		// fixes an issue with getting wrong values
-		// on detached elements
-		style = elem.style;
-
-	computed = computed || getStyles( elem );
-
-	// getPropertyValue is needed for:
-	//   .css('filter') (IE 9 only, #12537)
-	//   .css('--customProperty) (#3144)
-	if ( computed ) {
-		ret = computed.getPropertyValue( name ) || computed[ name ];
-
-		if ( ret === "" && !isAttached( elem ) ) {
-			ret = jQuery.style( elem, name );
-		}
-
-		// A tribute to the "awesome hack by Dean Edwards"
-		// Android Browser returns percentage for some values,
-		// but width seems to be reliably pixels.
-		// This is against the CSSOM draft spec:
-		// https://drafts.csswg.org/cssom/#resolved-values
-		if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) {
-
-			// Remember the original values
-			width = style.width;
-			minWidth = style.minWidth;
-			maxWidth = style.maxWidth;
-
-			// Put in the new values to get a computed value out
-			style.minWidth = style.maxWidth = style.width = ret;
-			ret = computed.width;
-
-			// Revert the changed values
-			style.width = width;
-			style.minWidth = minWidth;
-			style.maxWidth = maxWidth;
-		}
-	}
-
-	return ret !== undefined ?
-
-		// Support: IE <=9 - 11 only
-		// IE returns zIndex value as an integer.
-		ret + "" :
-		ret;
-}
-
-
-function addGetHookIf( conditionFn, hookFn ) {
-
-	// Define the hook, we'll check on the first run if it's really needed.
-	return {
-		get: function() {
-			if ( conditionFn() ) {
-
-				// Hook not needed (or it's not possible to use it due
-				// to missing dependency), remove it.
-				delete this.get;
-				return;
-			}
-
-			// Hook needed; redefine it so that the support test is not executed again.
-			return ( this.get = hookFn ).apply( this, arguments );
-		}
-	};
-}
-
-
-var cssPrefixes = [ "Webkit", "Moz", "ms" ],
-	emptyStyle = document.createElement( "div" ).style,
-	vendorProps = {};
-
-// Return a vendor-prefixed property or undefined
-function vendorPropName( name ) {
-
-	// Check for vendor prefixed names
-	var capName = name[ 0 ].toUpperCase() + name.slice( 1 ),
-		i = cssPrefixes.length;
-
-	while ( i-- ) {
-		name = cssPrefixes[ i ] + capName;
-		if ( name in emptyStyle ) {
-			return name;
-		}
-	}
-}
-
-// Return a potentially-mapped jQuery.cssProps or vendor prefixed property
-function finalPropName( name ) {
-	var final = jQuery.cssProps[ name ] || vendorProps[ name ];
-
-	if ( final ) {
-		return final;
-	}
-	if ( name in emptyStyle ) {
-		return name;
-	}
-	return vendorProps[ name ] = vendorPropName( name ) || name;
-}
-
-
-var
-
-	// Swappable if display is none or starts with table
-	// except "table", "table-cell", or "table-caption"
-	// See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display
-	rdisplayswap = /^(none|table(?!-c[ea]).+)/,
-	rcustomProp = /^--/,
-	cssShow = { position: "absolute", visibility: "hidden", display: "block" },
-	cssNormalTransform = {
-		letterSpacing: "0",
-		fontWeight: "400"
-	};
-
-function setPositiveNumber( _elem, value, subtract ) {
-
-	// Any relative (+/-) values have already been
-	// normalized at this point
-	var matches = rcssNum.exec( value );
-	return matches ?
-
-		// Guard against undefined "subtract", e.g., when used as in cssHooks
-		Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) :
-		value;
-}
-
-function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) {
-	var i = dimension === "width" ? 1 : 0,
-		extra = 0,
-		delta = 0;
-
-	// Adjustment may not be necessary
-	if ( box === ( isBorderBox ? "border" : "content" ) ) {
-		return 0;
-	}
-
-	for ( ; i < 4; i += 2 ) {
-
-		// Both box models exclude margin
-		if ( box === "margin" ) {
-			delta += jQuery.css( elem, box + cssExpand[ i ], true, styles );
-		}
-
-		// If we get here with a content-box, we're seeking "padding" or "border" or "margin"
-		if ( !isBorderBox ) {
-
-			// Add padding
-			delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-
-			// For "border" or "margin", add border
-			if ( box !== "padding" ) {
-				delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-
-			// But still keep track of it otherwise
-			} else {
-				extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-
-		// If we get here with a border-box (content + padding + border), we're seeking "content" or
-		// "padding" or "margin"
-		} else {
-
-			// For "content", subtract padding
-			if ( box === "content" ) {
-				delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-			}
-
-			// For "content" or "padding", subtract border
-			if ( box !== "margin" ) {
-				delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-		}
-	}
-
-	// Account for positive content-box scroll gutter when requested by providing computedVal
-	if ( !isBorderBox && computedVal >= 0 ) {
-
-		// offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border
-		// Assuming integer scroll gutter, subtract the rest and round down
-		delta += Math.max( 0, Math.ceil(
-			elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-			computedVal -
-			delta -
-			extra -
-			0.5
-
-		// If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter
-		// Use an explicit zero to avoid NaN (gh-3964)
-		) ) || 0;
-	}
-
-	return delta;
-}
-
-function getWidthOrHeight( elem, dimension, extra ) {
-
-	// Start with computed style
-	var styles = getStyles( elem ),
-
-		// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322).
-		// Fake content-box until we know it's needed to know the true value.
-		boxSizingNeeded = !support.boxSizingReliable() || extra,
-		isBorderBox = boxSizingNeeded &&
-			jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-		valueIsBorderBox = isBorderBox,
-
-		val = curCSS( elem, dimension, styles ),
-		offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 );
-
-	// Support: Firefox <=54
-	// Return a confounding non-pixel value or feign ignorance, as appropriate.
-	if ( rnumnonpx.test( val ) ) {
-		if ( !extra ) {
-			return val;
-		}
-		val = "auto";
-	}
-
-
-	// Support: IE 9 - 11 only
-	// Use offsetWidth/offsetHeight for when box sizing is unreliable.
-	// In those cases, the computed value can be trusted to be border-box.
-	if ( ( !support.boxSizingReliable() && isBorderBox ||
-
-		// Support: IE 10 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Interestingly, in some cases IE 9 doesn't suffer from this issue.
-		!support.reliableTrDimensions() && nodeName( elem, "tr" ) ||
-
-		// Fall back to offsetWidth/offsetHeight when value is "auto"
-		// This happens for inline elements with no explicit setting (gh-3571)
-		val === "auto" ||
-
-		// Support: Android <=4.1 - 4.3 only
-		// Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602)
-		!parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) &&
-
-		// Make sure the element is visible & connected
-		elem.getClientRects().length ) {
-
-		isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box";
-
-		// Where available, offsetWidth/offsetHeight approximate border box dimensions.
-		// Where not available (e.g., SVG), assume unreliable box-sizing and interpret the
-		// retrieved value as a content box dimension.
-		valueIsBorderBox = offsetProp in elem;
-		if ( valueIsBorderBox ) {
-			val = elem[ offsetProp ];
-		}
-	}
-
-	// Normalize "" and auto
-	val = parseFloat( val ) || 0;
-
-	// Adjust for the element's box model
-	return ( val +
-		boxModelAdjustment(
-			elem,
-			dimension,
-			extra || ( isBorderBox ? "border" : "content" ),
-			valueIsBorderBox,
-			styles,
-
-			// Provide the current computed size to request scroll gutter calculation (gh-3589)
-			val
-		)
-	) + "px";
-}
-
-jQuery.extend( {
-
-	// Add in style property hooks for overriding the default
-	// behavior of getting and setting a style property
-	cssHooks: {
-		opacity: {
-			get: function( elem, computed ) {
-				if ( computed ) {
-
-					// We should always get a number back from opacity
-					var ret = curCSS( elem, "opacity" );
-					return ret === "" ? "1" : ret;
-				}
-			}
-		}
-	},
-
-	// Don't automatically add "px" to these possibly-unitless properties
-	cssNumber: {
-		"animationIterationCount": true,
-		"columnCount": true,
-		"fillOpacity": true,
-		"flexGrow": true,
-		"flexShrink": true,
-		"fontWeight": true,
-		"gridArea": true,
-		"gridColumn": true,
-		"gridColumnEnd": true,
-		"gridColumnStart": true,
-		"gridRow": true,
-		"gridRowEnd": true,
-		"gridRowStart": true,
-		"lineHeight": true,
-		"opacity": true,
-		"order": true,
-		"orphans": true,
-		"widows": true,
-		"zIndex": true,
-		"zoom": true
-	},
-
-	// Add in properties whose names you wish to fix before
-	// setting or getting the value
-	cssProps: {},
-
-	// Get and set the style property on a DOM Node
-	style: function( elem, name, value, extra ) {
-
-		// Don't set styles on text and comment nodes
-		if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) {
-			return;
-		}
-
-		// Make sure that we're working with the right name
-		var ret, type, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name ),
-			style = elem.style;
-
-		// Make sure that we're working with the right name. We don't
-		// want to query the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Gets hook for the prefixed version, then unprefixed version
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// Check if we're setting a value
-		if ( value !== undefined ) {
-			type = typeof value;
-
-			// Convert "+=" or "-=" to relative numbers (#7345)
-			if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) {
-				value = adjustCSS( elem, name, ret );
-
-				// Fixes bug #9237
-				type = "number";
-			}
-
-			// Make sure that null and NaN values aren't set (#7116)
-			if ( value == null || value !== value ) {
-				return;
-			}
-
-			// If a number was passed in, add the unit (except for certain CSS properties)
-			// The isCustomProp check can be removed in jQuery 4.0 when we only auto-append
-			// "px" to a few hardcoded values.
-			if ( type === "number" && !isCustomProp ) {
-				value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" );
-			}
-
-			// background-* props affect original clone's values
-			if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) {
-				style[ name ] = "inherit";
-			}
-
-			// If a hook was provided, use that value, otherwise just set the specified value
-			if ( !hooks || !( "set" in hooks ) ||
-				( value = hooks.set( elem, value, extra ) ) !== undefined ) {
-
-				if ( isCustomProp ) {
-					style.setProperty( name, value );
-				} else {
-					style[ name ] = value;
-				}
-			}
-
-		} else {
-
-			// If a hook was provided get the non-computed value from there
-			if ( hooks && "get" in hooks &&
-				( ret = hooks.get( elem, false, extra ) ) !== undefined ) {
-
-				return ret;
-			}
-
-			// Otherwise just get the value from the style object
-			return style[ name ];
-		}
-	},
-
-	css: function( elem, name, extra, styles ) {
-		var val, num, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name );
-
-		// Make sure that we're working with the right name. We don't
-		// want to modify the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Try prefixed name followed by the unprefixed name
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// If a hook was provided get the computed value from there
-		if ( hooks && "get" in hooks ) {
-			val = hooks.get( elem, true, extra );
-		}
-
-		// Otherwise, if a way to get the computed value exists, use that
-		if ( val === undefined ) {
-			val = curCSS( elem, name, styles );
-		}
-
-		// Convert "normal" to computed value
-		if ( val === "normal" && name in cssNormalTransform ) {
-			val = cssNormalTransform[ name ];
-		}
-
-		// Make numeric if forced or a qualifier was provided and val looks numeric
-		if ( extra === "" || extra ) {
-			num = parseFloat( val );
-			return extra === true || isFinite( num ) ? num || 0 : val;
-		}
-
-		return val;
-	}
-} );
-
-jQuery.each( [ "height", "width" ], function( _i, dimension ) {
-	jQuery.cssHooks[ dimension ] = {
-		get: function( elem, computed, extra ) {
-			if ( computed ) {
-
-				// Certain elements can have dimension info if we invisibly show them
-				// but it must have a current display style that would benefit
-				return rdisplayswap.test( jQuery.css( elem, "display" ) ) &&
-
-					// Support: Safari 8+
-					// Table columns in Safari have non-zero offsetWidth & zero
-					// getBoundingClientRect().width unless display is changed.
-					// Support: IE <=11 only
-					// Running getBoundingClientRect on a disconnected node
-					// in IE throws an error.
-					( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ?
-					swap( elem, cssShow, function() {
-						return getWidthOrHeight( elem, dimension, extra );
-					} ) :
-					getWidthOrHeight( elem, dimension, extra );
-			}
-		},
-
-		set: function( elem, value, extra ) {
-			var matches,
-				styles = getStyles( elem ),
-
-				// Only read styles.position if the test has a chance to fail
-				// to avoid forcing a reflow.
-				scrollboxSizeBuggy = !support.scrollboxSize() &&
-					styles.position === "absolute",
-
-				// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991)
-				boxSizingNeeded = scrollboxSizeBuggy || extra,
-				isBorderBox = boxSizingNeeded &&
-					jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-				subtract = extra ?
-					boxModelAdjustment(
-						elem,
-						dimension,
-						extra,
-						isBorderBox,
-						styles
-					) :
-					0;
-
-			// Account for unreliable border-box dimensions by comparing offset* to computed and
-			// faking a content-box to get border and padding (gh-3699)
-			if ( isBorderBox && scrollboxSizeBuggy ) {
-				subtract -= Math.ceil(
-					elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-					parseFloat( styles[ dimension ] ) -
-					boxModelAdjustment( elem, dimension, "border", false, styles ) -
-					0.5
-				);
-			}
-
-			// Convert to pixels if value adjustment is needed
-			if ( subtract && ( matches = rcssNum.exec( value ) ) &&
-				( matches[ 3 ] || "px" ) !== "px" ) {
-
-				elem.style[ dimension ] = value;
-				value = jQuery.css( elem, dimension );
-			}
-
-			return setPositiveNumber( elem, value, subtract );
-		}
-	};
-} );
-
-jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft,
-	function( elem, computed ) {
-		if ( computed ) {
-			return ( parseFloat( curCSS( elem, "marginLeft" ) ) ||
-				elem.getBoundingClientRect().left -
-					swap( elem, { marginLeft: 0 }, function() {
-						return elem.getBoundingClientRect().left;
-					} )
-			) + "px";
-		}
-	}
-);
-
-// These hooks are used by animate to expand properties
-jQuery.each( {
-	margin: "",
-	padding: "",
-	border: "Width"
-}, function( prefix, suffix ) {
-	jQuery.cssHooks[ prefix + suffix ] = {
-		expand: function( value ) {
-			var i = 0,
-				expanded = {},
-
-				// Assumes a single number if not a string
-				parts = typeof value === "string" ? value.split( " " ) : [ value ];
-
-			for ( ; i < 4; i++ ) {
-				expanded[ prefix + cssExpand[ i ] + suffix ] =
-					parts[ i ] || parts[ i - 2 ] || parts[ 0 ];
-			}
-
-			return expanded;
-		}
-	};
-
-	if ( prefix !== "margin" ) {
-		jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber;
-	}
-} );
-
-jQuery.fn.extend( {
-	css: function( name, value ) {
-		return access( this, function( elem, name, value ) {
-			var styles, len,
-				map = {},
-				i = 0;
-
-			if ( Array.isArray( name ) ) {
-				styles = getStyles( elem );
-				len = name.length;
-
-				for ( ; i < len; i++ ) {
-					map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles );
-				}
-
-				return map;
-			}
-
-			return value !== undefined ?
-				jQuery.style( elem, name, value ) :
-				jQuery.css( elem, name );
-		}, name, value, arguments.length > 1 );
-	}
-} );
-
-
-function Tween( elem, options, prop, end, easing ) {
-	return new Tween.prototype.init( elem, options, prop, end, easing );
-}
-jQuery.Tween = Tween;
-
-Tween.prototype = {
-	constructor: Tween,
-	init: function( elem, options, prop, end, easing, unit ) {
-		this.elem = elem;
-		this.prop = prop;
-		this.easing = easing || jQuery.easing._default;
-		this.options = options;
-		this.start = this.now = this.cur();
-		this.end = end;
-		this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" );
-	},
-	cur: function() {
-		var hooks = Tween.propHooks[ this.prop ];
-
-		return hooks && hooks.get ?
-			hooks.get( this ) :
-			Tween.propHooks._default.get( this );
-	},
-	run: function( percent ) {
-		var eased,
-			hooks = Tween.propHooks[ this.prop ];
-
-		if ( this.options.duration ) {
-			this.pos = eased = jQuery.easing[ this.easing ](
-				percent, this.options.duration * percent, 0, 1, this.options.duration
-			);
-		} else {
-			this.pos = eased = percent;
-		}
-		this.now = ( this.end - this.start ) * eased + this.start;
-
-		if ( this.options.step ) {
-			this.options.step.call( this.elem, this.now, this );
-		}
-
-		if ( hooks && hooks.set ) {
-			hooks.set( this );
-		} else {
-			Tween.propHooks._default.set( this );
-		}
-		return this;
-	}
-};
-
-Tween.prototype.init.prototype = Tween.prototype;
-
-Tween.propHooks = {
-	_default: {
-		get: function( tween ) {
-			var result;
-
-			// Use a property on the element directly when it is not a DOM element,
-			// or when there is no matching style property that exists.
-			if ( tween.elem.nodeType !== 1 ||
-				tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) {
-				return tween.elem[ tween.prop ];
-			}
-
-			// Passing an empty string as a 3rd parameter to .css will automatically
-			// attempt a parseFloat and fallback to a string if the parse fails.
-			// Simple values such as "10px" are parsed to Float;
-			// complex values such as "rotate(1rad)" are returned as-is.
-			result = jQuery.css( tween.elem, tween.prop, "" );
-
-			// Empty strings, null, undefined and "auto" are converted to 0.
-			return !result || result === "auto" ? 0 : result;
-		},
-		set: function( tween ) {
-
-			// Use step hook for back compat.
-			// Use cssHook if its there.
-			// Use .style if available and use plain properties where available.
-			if ( jQuery.fx.step[ tween.prop ] ) {
-				jQuery.fx.step[ tween.prop ]( tween );
-			} else if ( tween.elem.nodeType === 1 && (
-				jQuery.cssHooks[ tween.prop ] ||
-					tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) {
-				jQuery.style( tween.elem, tween.prop, tween.now + tween.unit );
-			} else {
-				tween.elem[ tween.prop ] = tween.now;
-			}
-		}
-	}
-};
-
-// Support: IE <=9 only
-// Panic based approach to setting things on disconnected nodes
-Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = {
-	set: function( tween ) {
-		if ( tween.elem.nodeType && tween.elem.parentNode ) {
-			tween.elem[ tween.prop ] = tween.now;
-		}
-	}
-};
-
-jQuery.easing = {
-	linear: function( p ) {
-		return p;
-	},
-	swing: function( p ) {
-		return 0.5 - Math.cos( p * Math.PI ) / 2;
-	},
-	_default: "swing"
-};
-
-jQuery.fx = Tween.prototype.init;
-
-// Back compat <1.8 extension point
-jQuery.fx.step = {};
-
-
-
-
-var
-	fxNow, inProgress,
-	rfxtypes = /^(?:toggle|show|hide)$/,
-	rrun = /queueHooks$/;
-
-function schedule() {
-	if ( inProgress ) {
-		if ( document.hidden === false && window.requestAnimationFrame ) {
-			window.requestAnimationFrame( schedule );
-		} else {
-			window.setTimeout( schedule, jQuery.fx.interval );
-		}
-
-		jQuery.fx.tick();
-	}
-}
-
-// Animations created synchronously will run synchronously
-function createFxNow() {
-	window.setTimeout( function() {
-		fxNow = undefined;
-	} );
-	return ( fxNow = Date.now() );
-}
-
-// Generate parameters to create a standard animation
-function genFx( type, includeWidth ) {
-	var which,
-		i = 0,
-		attrs = { height: type };
-
-	// If we include width, step value is 1 to do all cssExpand values,
-	// otherwise step value is 2 to skip over Left and Right
-	includeWidth = includeWidth ? 1 : 0;
-	for ( ; i < 4; i += 2 - includeWidth ) {
-		which = cssExpand[ i ];
-		attrs[ "margin" + which ] = attrs[ "padding" + which ] = type;
-	}
-
-	if ( includeWidth ) {
-		attrs.opacity = attrs.width = type;
-	}
-
-	return attrs;
-}
-
-function createTween( value, prop, animation ) {
-	var tween,
-		collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ),
-		index = 0,
-		length = collection.length;
-	for ( ; index < length; index++ ) {
-		if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) {
-
-			// We're done with this property
-			return tween;
-		}
-	}
-}
-
-function defaultPrefilter( elem, props, opts ) {
-	var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display,
-		isBox = "width" in props || "height" in props,
-		anim = this,
-		orig = {},
-		style = elem.style,
-		hidden = elem.nodeType && isHiddenWithinTree( elem ),
-		dataShow = dataPriv.get( elem, "fxshow" );
-
-	// Queue-skipping animations hijack the fx hooks
-	if ( !opts.queue ) {
-		hooks = jQuery._queueHooks( elem, "fx" );
-		if ( hooks.unqueued == null ) {
-			hooks.unqueued = 0;
-			oldfire = hooks.empty.fire;
-			hooks.empty.fire = function() {
-				if ( !hooks.unqueued ) {
-					oldfire();
-				}
-			};
-		}
-		hooks.unqueued++;
-
-		anim.always( function() {
-
-			// Ensure the complete handler is called before this completes
-			anim.always( function() {
-				hooks.unqueued--;
-				if ( !jQuery.queue( elem, "fx" ).length ) {
-					hooks.empty.fire();
-				}
-			} );
-		} );
-	}
-
-	// Detect show/hide animations
-	for ( prop in props ) {
-		value = props[ prop ];
-		if ( rfxtypes.test( value ) ) {
-			delete props[ prop ];
-			toggle = toggle || value === "toggle";
-			if ( value === ( hidden ? "hide" : "show" ) ) {
-
-				// Pretend to be hidden if this is a "show" and
-				// there is still data from a stopped show/hide
-				if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) {
-					hidden = true;
-
-				// Ignore all other no-op show/hide data
-				} else {
-					continue;
-				}
-			}
-			orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop );
-		}
-	}
-
-	// Bail out if this is a no-op like .hide().hide()
-	propTween = !jQuery.isEmptyObject( props );
-	if ( !propTween && jQuery.isEmptyObject( orig ) ) {
-		return;
-	}
-
-	// Restrict "overflow" and "display" styles during box animations
-	if ( isBox && elem.nodeType === 1 ) {
-
-		// Support: IE <=9 - 11, Edge 12 - 15
-		// Record all 3 overflow attributes because IE does not infer the shorthand
-		// from identically-valued overflowX and overflowY and Edge just mirrors
-		// the overflowX value there.
-		opts.overflow = [ style.overflow, style.overflowX, style.overflowY ];
-
-		// Identify a display type, preferring old show/hide data over the CSS cascade
-		restoreDisplay = dataShow && dataShow.display;
-		if ( restoreDisplay == null ) {
-			restoreDisplay = dataPriv.get( elem, "display" );
-		}
-		display = jQuery.css( elem, "display" );
-		if ( display === "none" ) {
-			if ( restoreDisplay ) {
-				display = restoreDisplay;
-			} else {
-
-				// Get nonempty value(s) by temporarily forcing visibility
-				showHide( [ elem ], true );
-				restoreDisplay = elem.style.display || restoreDisplay;
-				display = jQuery.css( elem, "display" );
-				showHide( [ elem ] );
-			}
-		}
-
-		// Animate inline elements as inline-block
-		if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) {
-			if ( jQuery.css( elem, "float" ) === "none" ) {
-
-				// Restore the original display value at the end of pure show/hide animations
-				if ( !propTween ) {
-					anim.done( function() {
-						style.display = restoreDisplay;
-					} );
-					if ( restoreDisplay == null ) {
-						display = style.display;
-						restoreDisplay = display === "none" ? "" : display;
-					}
-				}
-				style.display = "inline-block";
-			}
-		}
-	}
-
-	if ( opts.overflow ) {
-		style.overflow = "hidden";
-		anim.always( function() {
-			style.overflow = opts.overflow[ 0 ];
-			style.overflowX = opts.overflow[ 1 ];
-			style.overflowY = opts.overflow[ 2 ];
-		} );
-	}
-
-	// Implement show/hide animations
-	propTween = false;
-	for ( prop in orig ) {
-
-		// General show/hide setup for this element animation
-		if ( !propTween ) {
-			if ( dataShow ) {
-				if ( "hidden" in dataShow ) {
-					hidden = dataShow.hidden;
-				}
-			} else {
-				dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } );
-			}
-
-			// Store hidden/visible for toggle so `.stop().toggle()` "reverses"
-			if ( toggle ) {
-				dataShow.hidden = !hidden;
-			}
-
-			// Show elements before animating them
-			if ( hidden ) {
-				showHide( [ elem ], true );
-			}
-
-			/* eslint-disable no-loop-func */
-
-			anim.done( function() {
-
-				/* eslint-enable no-loop-func */
-
-				// The final step of a "hide" animation is actually hiding the element
-				if ( !hidden ) {
-					showHide( [ elem ] );
-				}
-				dataPriv.remove( elem, "fxshow" );
-				for ( prop in orig ) {
-					jQuery.style( elem, prop, orig[ prop ] );
-				}
-			} );
-		}
-
-		// Per-property setup
-		propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim );
-		if ( !( prop in dataShow ) ) {
-			dataShow[ prop ] = propTween.start;
-			if ( hidden ) {
-				propTween.end = propTween.start;
-				propTween.start = 0;
-			}
-		}
-	}
-}
-
-function propFilter( props, specialEasing ) {
-	var index, name, easing, value, hooks;
-
-	// camelCase, specialEasing and expand cssHook pass
-	for ( index in props ) {
-		name = camelCase( index );
-		easing = specialEasing[ name ];
-		value = props[ index ];
-		if ( Array.isArray( value ) ) {
-			easing = value[ 1 ];
-			value = props[ index ] = value[ 0 ];
-		}
-
-		if ( index !== name ) {
-			props[ name ] = value;
-			delete props[ index ];
-		}
-
-		hooks = jQuery.cssHooks[ name ];
-		if ( hooks && "expand" in hooks ) {
-			value = hooks.expand( value );
-			delete props[ name ];
-
-			// Not quite $.extend, this won't overwrite existing keys.
-			// Reusing 'index' because we have the correct "name"
-			for ( index in value ) {
-				if ( !( index in props ) ) {
-					props[ index ] = value[ index ];
-					specialEasing[ index ] = easing;
-				}
-			}
-		} else {
-			specialEasing[ name ] = easing;
-		}
-	}
-}
-
-function Animation( elem, properties, options ) {
-	var result,
-		stopped,
-		index = 0,
-		length = Animation.prefilters.length,
-		deferred = jQuery.Deferred().always( function() {
-
-			// Don't match elem in the :animated selector
-			delete tick.elem;
-		} ),
-		tick = function() {
-			if ( stopped ) {
-				return false;
-			}
-			var currentTime = fxNow || createFxNow(),
-				remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ),
-
-				// Support: Android 2.3 only
-				// Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497)
-				temp = remaining / animation.duration || 0,
-				percent = 1 - temp,
-				index = 0,
-				length = animation.tweens.length;
-
-			for ( ; index < length; index++ ) {
-				animation.tweens[ index ].run( percent );
-			}
-
-			deferred.notifyWith( elem, [ animation, percent, remaining ] );
-
-			// If there's more to do, yield
-			if ( percent < 1 && length ) {
-				return remaining;
-			}
-
-			// If this was an empty animation, synthesize a final progress notification
-			if ( !length ) {
-				deferred.notifyWith( elem, [ animation, 1, 0 ] );
-			}
-
-			// Resolve the animation and report its conclusion
-			deferred.resolveWith( elem, [ animation ] );
-			return false;
-		},
-		animation = deferred.promise( {
-			elem: elem,
-			props: jQuery.extend( {}, properties ),
-			opts: jQuery.extend( true, {
-				specialEasing: {},
-				easing: jQuery.easing._default
-			}, options ),
-			originalProperties: properties,
-			originalOptions: options,
-			startTime: fxNow || createFxNow(),
-			duration: options.duration,
-			tweens: [],
-			createTween: function( prop, end ) {
-				var tween = jQuery.Tween( elem, animation.opts, prop, end,
-					animation.opts.specialEasing[ prop ] || animation.opts.easing );
-				animation.tweens.push( tween );
-				return tween;
-			},
-			stop: function( gotoEnd ) {
-				var index = 0,
-
-					// If we are going to the end, we want to run all the tweens
-					// otherwise we skip this part
-					length = gotoEnd ? animation.tweens.length : 0;
-				if ( stopped ) {
-					return this;
-				}
-				stopped = true;
-				for ( ; index < length; index++ ) {
-					animation.tweens[ index ].run( 1 );
-				}
-
-				// Resolve when we played the last frame; otherwise, reject
-				if ( gotoEnd ) {
-					deferred.notifyWith( elem, [ animation, 1, 0 ] );
-					deferred.resolveWith( elem, [ animation, gotoEnd ] );
-				} else {
-					deferred.rejectWith( elem, [ animation, gotoEnd ] );
-				}
-				return this;
-			}
-		} ),
-		props = animation.props;
-
-	propFilter( props, animation.opts.specialEasing );
-
-	for ( ; index < length; index++ ) {
-		result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts );
-		if ( result ) {
-			if ( isFunction( result.stop ) ) {
-				jQuery._queueHooks( animation.elem, animation.opts.queue ).stop =
-					result.stop.bind( result );
-			}
-			return result;
-		}
-	}
-
-	jQuery.map( props, createTween, animation );
-
-	if ( isFunction( animation.opts.start ) ) {
-		animation.opts.start.call( elem, animation );
-	}
-
-	// Attach callbacks from options
-	animation
-		.progress( animation.opts.progress )
-		.done( animation.opts.done, animation.opts.complete )
-		.fail( animation.opts.fail )
-		.always( animation.opts.always );
-
-	jQuery.fx.timer(
-		jQuery.extend( tick, {
-			elem: elem,
-			anim: animation,
-			queue: animation.opts.queue
-		} )
-	);
-
-	return animation;
-}
-
-jQuery.Animation = jQuery.extend( Animation, {
-
-	tweeners: {
-		"*": [ function( prop, value ) {
-			var tween = this.createTween( prop, value );
-			adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween );
-			return tween;
-		} ]
-	},
-
-	tweener: function( props, callback ) {
-		if ( isFunction( props ) ) {
-			callback = props;
-			props = [ "*" ];
-		} else {
-			props = props.match( rnothtmlwhite );
-		}
-
-		var prop,
-			index = 0,
-			length = props.length;
-
-		for ( ; index < length; index++ ) {
-			prop = props[ index ];
-			Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || [];
-			Animation.tweeners[ prop ].unshift( callback );
-		}
-	},
-
-	prefilters: [ defaultPrefilter ],
-
-	prefilter: function( callback, prepend ) {
-		if ( prepend ) {
-			Animation.prefilters.unshift( callback );
-		} else {
-			Animation.prefilters.push( callback );
-		}
-	}
-} );
-
-jQuery.speed = function( speed, easing, fn ) {
-	var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : {
-		complete: fn || !fn && easing ||
-			isFunction( speed ) && speed,
-		duration: speed,
-		easing: fn && easing || easing && !isFunction( easing ) && easing
-	};
-
-	// Go to the end state if fx are off
-	if ( jQuery.fx.off ) {
-		opt.duration = 0;
-
-	} else {
-		if ( typeof opt.duration !== "number" ) {
-			if ( opt.duration in jQuery.fx.speeds ) {
-				opt.duration = jQuery.fx.speeds[ opt.duration ];
-
-			} else {
-				opt.duration = jQuery.fx.speeds._default;
-			}
-		}
-	}
-
-	// Normalize opt.queue - true/undefined/null -> "fx"
-	if ( opt.queue == null || opt.queue === true ) {
-		opt.queue = "fx";
-	}
-
-	// Queueing
-	opt.old = opt.complete;
-
-	opt.complete = function() {
-		if ( isFunction( opt.old ) ) {
-			opt.old.call( this );
-		}
-
-		if ( opt.queue ) {
-			jQuery.dequeue( this, opt.queue );
-		}
-	};
-
-	return opt;
-};
-
-jQuery.fn.extend( {
-	fadeTo: function( speed, to, easing, callback ) {
-
-		// Show any hidden elements after setting opacity to 0
-		return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show()
-
-			// Animate to the value specified
-			.end().animate( { opacity: to }, speed, easing, callback );
-	},
-	animate: function( prop, speed, easing, callback ) {
-		var empty = jQuery.isEmptyObject( prop ),
-			optall = jQuery.speed( speed, easing, callback ),
-			doAnimation = function() {
-
-				// Operate on a copy of prop so per-property easing won't be lost
-				var anim = Animation( this, jQuery.extend( {}, prop ), optall );
-
-				// Empty animations, or finishing resolves immediately
-				if ( empty || dataPriv.get( this, "finish" ) ) {
-					anim.stop( true );
-				}
-			};
-
-		doAnimation.finish = doAnimation;
-
-		return empty || optall.queue === false ?
-			this.each( doAnimation ) :
-			this.queue( optall.queue, doAnimation );
-	},
-	stop: function( type, clearQueue, gotoEnd ) {
-		var stopQueue = function( hooks ) {
-			var stop = hooks.stop;
-			delete hooks.stop;
-			stop( gotoEnd );
-		};
-
-		if ( typeof type !== "string" ) {
-			gotoEnd = clearQueue;
-			clearQueue = type;
-			type = undefined;
-		}
-		if ( clearQueue ) {
-			this.queue( type || "fx", [] );
-		}
-
-		return this.each( function() {
-			var dequeue = true,
-				index = type != null && type + "queueHooks",
-				timers = jQuery.timers,
-				data = dataPriv.get( this );
-
-			if ( index ) {
-				if ( data[ index ] && data[ index ].stop ) {
-					stopQueue( data[ index ] );
-				}
-			} else {
-				for ( index in data ) {
-					if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) {
-						stopQueue( data[ index ] );
-					}
-				}
-			}
-
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this &&
-					( type == null || timers[ index ].queue === type ) ) {
-
-					timers[ index ].anim.stop( gotoEnd );
-					dequeue = false;
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Start the next in the queue if the last step wasn't forced.
-			// Timers currently will call their complete callbacks, which
-			// will dequeue but only if they were gotoEnd.
-			if ( dequeue || !gotoEnd ) {
-				jQuery.dequeue( this, type );
-			}
-		} );
-	},
-	finish: function( type ) {
-		if ( type !== false ) {
-			type = type || "fx";
-		}
-		return this.each( function() {
-			var index,
-				data = dataPriv.get( this ),
-				queue = data[ type + "queue" ],
-				hooks = data[ type + "queueHooks" ],
-				timers = jQuery.timers,
-				length = queue ? queue.length : 0;
-
-			// Enable finishing flag on private data
-			data.finish = true;
-
-			// Empty the queue first
-			jQuery.queue( this, type, [] );
-
-			if ( hooks && hooks.stop ) {
-				hooks.stop.call( this, true );
-			}
-
-			// Look for any active animations, and finish them
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this && timers[ index ].queue === type ) {
-					timers[ index ].anim.stop( true );
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Look for any animations in the old queue and finish them
-			for ( index = 0; index < length; index++ ) {
-				if ( queue[ index ] && queue[ index ].finish ) {
-					queue[ index ].finish.call( this );
-				}
-			}
-
-			// Turn off finishing flag
-			delete data.finish;
-		} );
-	}
-} );
-
-jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) {
-	var cssFn = jQuery.fn[ name ];
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return speed == null || typeof speed === "boolean" ?
-			cssFn.apply( this, arguments ) :
-			this.animate( genFx( name, true ), speed, easing, callback );
-	};
-} );
-
-// Generate shortcuts for custom animations
-jQuery.each( {
-	slideDown: genFx( "show" ),
-	slideUp: genFx( "hide" ),
-	slideToggle: genFx( "toggle" ),
-	fadeIn: { opacity: "show" },
-	fadeOut: { opacity: "hide" },
-	fadeToggle: { opacity: "toggle" }
-}, function( name, props ) {
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return this.animate( props, speed, easing, callback );
-	};
-} );
-
-jQuery.timers = [];
-jQuery.fx.tick = function() {
-	var timer,
-		i = 0,
-		timers = jQuery.timers;
-
-	fxNow = Date.now();
-
-	for ( ; i < timers.length; i++ ) {
-		timer = timers[ i ];
-
-		// Run the timer and safely remove it when done (allowing for external removal)
-		if ( !timer() && timers[ i ] === timer ) {
-			timers.splice( i--, 1 );
-		}
-	}
-
-	if ( !timers.length ) {
-		jQuery.fx.stop();
-	}
-	fxNow = undefined;
-};
-
-jQuery.fx.timer = function( timer ) {
-	jQuery.timers.push( timer );
-	jQuery.fx.start();
-};
-
-jQuery.fx.interval = 13;
-jQuery.fx.start = function() {
-	if ( inProgress ) {
-		return;
-	}
-
-	inProgress = true;
-	schedule();
-};
-
-jQuery.fx.stop = function() {
-	inProgress = null;
-};
-
-jQuery.fx.speeds = {
-	slow: 600,
-	fast: 200,
-
-	// Default speed
-	_default: 400
-};
-
-
-// Based off of the plugin by Clint Helfers, with permission.
-// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/
-jQuery.fn.delay = function( time, type ) {
-	time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time;
-	type = type || "fx";
-
-	return this.queue( type, function( next, hooks ) {
-		var timeout = window.setTimeout( next, time );
-		hooks.stop = function() {
-			window.clearTimeout( timeout );
-		};
-	} );
-};
-
-
-( function() {
-	var input = document.createElement( "input" ),
-		select = document.createElement( "select" ),
-		opt = select.appendChild( document.createElement( "option" ) );
-
-	input.type = "checkbox";
-
-	// Support: Android <=4.3 only
-	// Default value for a checkbox should be "on"
-	support.checkOn = input.value !== "";
-
-	// Support: IE <=11 only
-	// Must access selectedIndex to make default options select
-	support.optSelected = opt.selected;
-
-	// Support: IE <=11 only
-	// An input loses its value after becoming a radio
-	input = document.createElement( "input" );
-	input.value = "t";
-	input.type = "radio";
-	support.radioValue = input.value === "t";
-} )();
-
-
-var boolHook,
-	attrHandle = jQuery.expr.attrHandle;
-
-jQuery.fn.extend( {
-	attr: function( name, value ) {
-		return access( this, jQuery.attr, name, value, arguments.length > 1 );
-	},
-
-	removeAttr: function( name ) {
-		return this.each( function() {
-			jQuery.removeAttr( this, name );
-		} );
-	}
-} );
-
-jQuery.extend( {
-	attr: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set attributes on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		// Fallback to prop when attributes are not supported
-		if ( typeof elem.getAttribute === "undefined" ) {
-			return jQuery.prop( elem, name, value );
-		}
-
-		// Attribute hooks are determined by the lowercase version
-		// Grab necessary hook if one is defined
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-			hooks = jQuery.attrHooks[ name.toLowerCase() ] ||
-				( jQuery.expr.match.bool.test( name ) ? boolHook : undefined );
-		}
-
-		if ( value !== undefined ) {
-			if ( value === null ) {
-				jQuery.removeAttr( elem, name );
-				return;
-			}
-
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			elem.setAttribute( name, value + "" );
-			return value;
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		ret = jQuery.find.attr( elem, name );
-
-		// Non-existent attributes return null, we normalize to undefined
-		return ret == null ? undefined : ret;
-	},
-
-	attrHooks: {
-		type: {
-			set: function( elem, value ) {
-				if ( !support.radioValue && value === "radio" &&
-					nodeName( elem, "input" ) ) {
-					var val = elem.value;
-					elem.setAttribute( "type", value );
-					if ( val ) {
-						elem.value = val;
-					}
-					return value;
-				}
-			}
-		}
-	},
-
-	removeAttr: function( elem, value ) {
-		var name,
-			i = 0,
-
-			// Attribute names can contain non-HTML whitespace characters
-			// https://html.spec.whatwg.org/multipage/syntax.html#attributes-2
-			attrNames = value && value.match( rnothtmlwhite );
-
-		if ( attrNames && elem.nodeType === 1 ) {
-			while ( ( name = attrNames[ i++ ] ) ) {
-				elem.removeAttribute( name );
-			}
-		}
-	}
-} );
-
-// Hooks for boolean attributes
-boolHook = {
-	set: function( elem, value, name ) {
-		if ( value === false ) {
-
-			// Remove boolean attributes when set to false
-			jQuery.removeAttr( elem, name );
-		} else {
-			elem.setAttribute( name, name );
-		}
-		return name;
-	}
-};
-
-jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) {
-	var getter = attrHandle[ name ] || jQuery.find.attr;
-
-	attrHandle[ name ] = function( elem, name, isXML ) {
-		var ret, handle,
-			lowercaseName = name.toLowerCase();
-
-		if ( !isXML ) {
-
-			// Avoid an infinite loop by temporarily removing this function from the getter
-			handle = attrHandle[ lowercaseName ];
-			attrHandle[ lowercaseName ] = ret;
-			ret = getter( elem, name, isXML ) != null ?
-				lowercaseName :
-				null;
-			attrHandle[ lowercaseName ] = handle;
-		}
-		return ret;
-	};
-} );
-
-
-
-
-var rfocusable = /^(?:input|select|textarea|button)$/i,
-	rclickable = /^(?:a|area)$/i;
-
-jQuery.fn.extend( {
-	prop: function( name, value ) {
-		return access( this, jQuery.prop, name, value, arguments.length > 1 );
-	},
-
-	removeProp: function( name ) {
-		return this.each( function() {
-			delete this[ jQuery.propFix[ name ] || name ];
-		} );
-	}
-} );
-
-jQuery.extend( {
-	prop: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set properties on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-
-			// Fix name and attach hooks
-			name = jQuery.propFix[ name ] || name;
-			hooks = jQuery.propHooks[ name ];
-		}
-
-		if ( value !== undefined ) {
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			return ( elem[ name ] = value );
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		return elem[ name ];
-	},
-
-	propHooks: {
-		tabIndex: {
-			get: function( elem ) {
-
-				// Support: IE <=9 - 11 only
-				// elem.tabIndex doesn't always return the
-				// correct value when it hasn't been explicitly set
-				// https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/
-				// Use proper attribute retrieval(#12072)
-				var tabindex = jQuery.find.attr( elem, "tabindex" );
-
-				if ( tabindex ) {
-					return parseInt( tabindex, 10 );
-				}
-
-				if (
-					rfocusable.test( elem.nodeName ) ||
-					rclickable.test( elem.nodeName ) &&
-					elem.href
-				) {
-					return 0;
-				}
-
-				return -1;
-			}
-		}
-	},
-
-	propFix: {
-		"for": "htmlFor",
-		"class": "className"
-	}
-} );
-
-// Support: IE <=11 only
-// Accessing the selectedIndex property
-// forces the browser to respect setting selected
-// on the option
-// The getter ensures a default option is selected
-// when in an optgroup
-// eslint rule "no-unused-expressions" is disabled for this code
-// since it considers such accessions noop
-if ( !support.optSelected ) {
-	jQuery.propHooks.selected = {
-		get: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent && parent.parentNode ) {
-				parent.parentNode.selectedIndex;
-			}
-			return null;
-		},
-		set: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent ) {
-				parent.selectedIndex;
-
-				if ( parent.parentNode ) {
-					parent.parentNode.selectedIndex;
-				}
-			}
-		}
-	};
-}
-
-jQuery.each( [
-	"tabIndex",
-	"readOnly",
-	"maxLength",
-	"cellSpacing",
-	"cellPadding",
-	"rowSpan",
-	"colSpan",
-	"useMap",
-	"frameBorder",
-	"contentEditable"
-], function() {
-	jQuery.propFix[ this.toLowerCase() ] = this;
-} );
-
-
-
-
-	// Strip and collapse whitespace according to HTML spec
-	// https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace
-	function stripAndCollapse( value ) {
-		var tokens = value.match( rnothtmlwhite ) || [];
-		return tokens.join( " " );
-	}
-
-
-function getClass( elem ) {
-	return elem.getAttribute && elem.getAttribute( "class" ) || "";
-}
-
-function classesToArray( value ) {
-	if ( Array.isArray( value ) ) {
-		return value;
-	}
-	if ( typeof value === "string" ) {
-		return value.match( rnothtmlwhite ) || [];
-	}
-	return [];
-}
-
-jQuery.fn.extend( {
-	addClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).addClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-						if ( cur.indexOf( " " + clazz + " " ) < 0 ) {
-							cur += clazz + " ";
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	removeClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		if ( !arguments.length ) {
-			return this.attr( "class", "" );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-
-				// This expression is here for better compressibility (see addClass)
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-
-						// Remove *all* instances
-						while ( cur.indexOf( " " + clazz + " " ) > -1 ) {
-							cur = cur.replace( " " + clazz + " ", " " );
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	toggleClass: function( value, stateVal ) {
-		var type = typeof value,
-			isValidValue = type === "string" || Array.isArray( value );
-
-		if ( typeof stateVal === "boolean" && isValidValue ) {
-			return stateVal ? this.addClass( value ) : this.removeClass( value );
-		}
-
-		if ( isFunction( value ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).toggleClass(
-					value.call( this, i, getClass( this ), stateVal ),
-					stateVal
-				);
-			} );
-		}
-
-		return this.each( function() {
-			var className, i, self, classNames;
-
-			if ( isValidValue ) {
-
-				// Toggle individual class names
-				i = 0;
-				self = jQuery( this );
-				classNames = classesToArray( value );
-
-				while ( ( className = classNames[ i++ ] ) ) {
-
-					// Check each className given, space separated list
-					if ( self.hasClass( className ) ) {
-						self.removeClass( className );
-					} else {
-						self.addClass( className );
-					}
-				}
-
-			// Toggle whole class name
-			} else if ( value === undefined || type === "boolean" ) {
-				className = getClass( this );
-				if ( className ) {
-
-					// Store className if set
-					dataPriv.set( this, "__className__", className );
-				}
-
-				// If the element has a class name or if we're passed `false`,
-				// then remove the whole classname (if there was one, the above saved it).
-				// Otherwise bring back whatever was previously saved (if anything),
-				// falling back to the empty string if nothing was stored.
-				if ( this.setAttribute ) {
-					this.setAttribute( "class",
-						className || value === false ?
-							"" :
-							dataPriv.get( this, "__className__" ) || ""
-					);
-				}
-			}
-		} );
-	},
-
-	hasClass: function( selector ) {
-		var className, elem,
-			i = 0;
-
-		className = " " + selector + " ";
-		while ( ( elem = this[ i++ ] ) ) {
-			if ( elem.nodeType === 1 &&
-				( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) {
-				return true;
-			}
-		}
-
-		return false;
-	}
-} );
-
-
-
-
-var rreturn = /\r/g;
-
-jQuery.fn.extend( {
-	val: function( value ) {
-		var hooks, ret, valueIsFunction,
-			elem = this[ 0 ];
-
-		if ( !arguments.length ) {
-			if ( elem ) {
-				hooks = jQuery.valHooks[ elem.type ] ||
-					jQuery.valHooks[ elem.nodeName.toLowerCase() ];
-
-				if ( hooks &&
-					"get" in hooks &&
-					( ret = hooks.get( elem, "value" ) ) !== undefined
-				) {
-					return ret;
-				}
-
-				ret = elem.value;
-
-				// Handle most common string cases
-				if ( typeof ret === "string" ) {
-					return ret.replace( rreturn, "" );
-				}
-
-				// Handle cases where value is null/undef or number
-				return ret == null ? "" : ret;
-			}
-
-			return;
-		}
-
-		valueIsFunction = isFunction( value );
-
-		return this.each( function( i ) {
-			var val;
-
-			if ( this.nodeType !== 1 ) {
-				return;
-			}
-
-			if ( valueIsFunction ) {
-				val = value.call( this, i, jQuery( this ).val() );
-			} else {
-				val = value;
-			}
-
-			// Treat null/undefined as ""; convert numbers to string
-			if ( val == null ) {
-				val = "";
-
-			} else if ( typeof val === "number" ) {
-				val += "";
-
-			} else if ( Array.isArray( val ) ) {
-				val = jQuery.map( val, function( value ) {
-					return value == null ? "" : value + "";
-				} );
-			}
-
-			hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ];
-
-			// If set returns undefined, fall back to normal setting
-			if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) {
-				this.value = val;
-			}
-		} );
-	}
-} );
-
-jQuery.extend( {
-	valHooks: {
-		option: {
-			get: function( elem ) {
-
-				var val = jQuery.find.attr( elem, "value" );
-				return val != null ?
-					val :
-
-					// Support: IE <=10 - 11 only
-					// option.text throws exceptions (#14686, #14858)
-					// Strip and collapse whitespace
-					// https://html.spec.whatwg.org/#strip-and-collapse-whitespace
-					stripAndCollapse( jQuery.text( elem ) );
-			}
-		},
-		select: {
-			get: function( elem ) {
-				var value, option, i,
-					options = elem.options,
-					index = elem.selectedIndex,
-					one = elem.type === "select-one",
-					values = one ? null : [],
-					max = one ? index + 1 : options.length;
-
-				if ( index < 0 ) {
-					i = max;
-
-				} else {
-					i = one ? index : 0;
-				}
-
-				// Loop through all the selected options
-				for ( ; i < max; i++ ) {
-					option = options[ i ];
-
-					// Support: IE <=9 only
-					// IE8-9 doesn't update selected after form reset (#2551)
-					if ( ( option.selected || i === index ) &&
-
-							// Don't return options that are disabled or in a disabled optgroup
-							!option.disabled &&
-							( !option.parentNode.disabled ||
-								!nodeName( option.parentNode, "optgroup" ) ) ) {
-
-						// Get the specific value for the option
-						value = jQuery( option ).val();
-
-						// We don't need an array for one selects
-						if ( one ) {
-							return value;
-						}
-
-						// Multi-Selects return an array
-						values.push( value );
-					}
-				}
-
-				return values;
-			},
-
-			set: function( elem, value ) {
-				var optionSet, option,
-					options = elem.options,
-					values = jQuery.makeArray( value ),
-					i = options.length;
-
-				while ( i-- ) {
-					option = options[ i ];
-
-					/* eslint-disable no-cond-assign */
-
-					if ( option.selected =
-						jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1
-					) {
-						optionSet = true;
-					}
-
-					/* eslint-enable no-cond-assign */
-				}
-
-				// Force browsers to behave consistently when non-matching value is set
-				if ( !optionSet ) {
-					elem.selectedIndex = -1;
-				}
-				return values;
-			}
-		}
-	}
-} );
-
-// Radios and checkboxes getter/setter
-jQuery.each( [ "radio", "checkbox" ], function() {
-	jQuery.valHooks[ this ] = {
-		set: function( elem, value ) {
-			if ( Array.isArray( value ) ) {
-				return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 );
-			}
-		}
-	};
-	if ( !support.checkOn ) {
-		jQuery.valHooks[ this ].get = function( elem ) {
-			return elem.getAttribute( "value" ) === null ? "on" : elem.value;
-		};
-	}
-} );
-
-
-
-
-// Return jQuery for attributes-only inclusion
-
-
-support.focusin = "onfocusin" in window;
-
-
-var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/,
-	stopPropagationCallback = function( e ) {
-		e.stopPropagation();
-	};
-
-jQuery.extend( jQuery.event, {
-
-	trigger: function( event, data, elem, onlyHandlers ) {
-
-		var i, cur, tmp, bubbleType, ontype, handle, special, lastElement,
-			eventPath = [ elem || document ],
-			type = hasOwn.call( event, "type" ) ? event.type : event,
-			namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : [];
-
-		cur = lastElement = tmp = elem = elem || document;
-
-		// Don't do events on text and comment nodes
-		if ( elem.nodeType === 3 || elem.nodeType === 8 ) {
-			return;
-		}
-
-		// focus/blur morphs to focusin/out; ensure we're not firing them right now
-		if ( rfocusMorph.test( type + jQuery.event.triggered ) ) {
-			return;
-		}
-
-		if ( type.indexOf( "." ) > -1 ) {
-
-			// Namespaced trigger; create a regexp to match event type in handle()
-			namespaces = type.split( "." );
-			type = namespaces.shift();
-			namespaces.sort();
-		}
-		ontype = type.indexOf( ":" ) < 0 && "on" + type;
-
-		// Caller can pass in a jQuery.Event object, Object, or just an event type string
-		event = event[ jQuery.expando ] ?
-			event :
-			new jQuery.Event( type, typeof event === "object" && event );
-
-		// Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true)
-		event.isTrigger = onlyHandlers ? 2 : 3;
-		event.namespace = namespaces.join( "." );
-		event.rnamespace = event.namespace ?
-			new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) :
-			null;
-
-		// Clean up the event in case it is being reused
-		event.result = undefined;
-		if ( !event.target ) {
-			event.target = elem;
-		}
-
-		// Clone any incoming data and prepend the event, creating the handler arg list
-		data = data == null ?
-			[ event ] :
-			jQuery.makeArray( data, [ event ] );
-
-		// Allow special events to draw outside the lines
-		special = jQuery.event.special[ type ] || {};
-		if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) {
-			return;
-		}
-
-		// Determine event propagation path in advance, per W3C events spec (#9951)
-		// Bubble up to document, then to window; watch for a global ownerDocument var (#9724)
-		if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) {
-
-			bubbleType = special.delegateType || type;
-			if ( !rfocusMorph.test( bubbleType + type ) ) {
-				cur = cur.parentNode;
-			}
-			for ( ; cur; cur = cur.parentNode ) {
-				eventPath.push( cur );
-				tmp = cur;
-			}
-
-			// Only add window if we got to document (e.g., not plain obj or detached DOM)
-			if ( tmp === ( elem.ownerDocument || document ) ) {
-				eventPath.push( tmp.defaultView || tmp.parentWindow || window );
-			}
-		}
-
-		// Fire handlers on the event path
-		i = 0;
-		while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) {
-			lastElement = cur;
-			event.type = i > 1 ?
-				bubbleType :
-				special.bindType || type;
-
-			// jQuery handler
-			handle = ( dataPriv.get( cur, "events" ) || Object.create( null ) )[ event.type ] &&
-				dataPriv.get( cur, "handle" );
-			if ( handle ) {
-				handle.apply( cur, data );
-			}
-
-			// Native handler
-			handle = ontype && cur[ ontype ];
-			if ( handle && handle.apply && acceptData( cur ) ) {
-				event.result = handle.apply( cur, data );
-				if ( event.result === false ) {
-					event.preventDefault();
-				}
-			}
-		}
-		event.type = type;
-
-		// If nobody prevented the default action, do it now
-		if ( !onlyHandlers && !event.isDefaultPrevented() ) {
-
-			if ( ( !special._default ||
-				special._default.apply( eventPath.pop(), data ) === false ) &&
-				acceptData( elem ) ) {
-
-				// Call a native DOM method on the target with the same name as the event.
-				// Don't do default actions on window, that's where global variables be (#6170)
-				if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) {
-
-					// Don't re-trigger an onFOO event when we call its FOO() method
-					tmp = elem[ ontype ];
-
-					if ( tmp ) {
-						elem[ ontype ] = null;
-					}
-
-					// Prevent re-triggering of the same event, since we already bubbled it above
-					jQuery.event.triggered = type;
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.addEventListener( type, stopPropagationCallback );
-					}
-
-					elem[ type ]();
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.removeEventListener( type, stopPropagationCallback );
-					}
-
-					jQuery.event.triggered = undefined;
-
-					if ( tmp ) {
-						elem[ ontype ] = tmp;
-					}
-				}
-			}
-		}
-
-		return event.result;
-	},
-
-	// Piggyback on a donor event to simulate a different one
-	// Used only for `focus(in | out)` events
-	simulate: function( type, elem, event ) {
-		var e = jQuery.extend(
-			new jQuery.Event(),
-			event,
-			{
-				type: type,
-				isSimulated: true
-			}
-		);
-
-		jQuery.event.trigger( e, null, elem );
-	}
-
-} );
-
-jQuery.fn.extend( {
-
-	trigger: function( type, data ) {
-		return this.each( function() {
-			jQuery.event.trigger( type, data, this );
-		} );
-	},
-	triggerHandler: function( type, data ) {
-		var elem = this[ 0 ];
-		if ( elem ) {
-			return jQuery.event.trigger( type, data, elem, true );
-		}
-	}
-} );
-
-
-// Support: Firefox <=44
-// Firefox doesn't have focus(in | out) events
-// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787
-//
-// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1
-// focus(in | out) events fire after focus & blur events,
-// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order
-// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857
-if ( !support.focusin ) {
-	jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) {
-
-		// Attach a single capturing handler on the document while someone wants focusin/focusout
-		var handler = function( event ) {
-			jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) );
-		};
-
-		jQuery.event.special[ fix ] = {
-			setup: function() {
-
-				// Handle: regular nodes (via `this.ownerDocument`), window
-				// (via `this.document`) & document (via `this`).
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix );
-
-				if ( !attaches ) {
-					doc.addEventListener( orig, handler, true );
-				}
-				dataPriv.access( doc, fix, ( attaches || 0 ) + 1 );
-			},
-			teardown: function() {
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix ) - 1;
-
-				if ( !attaches ) {
-					doc.removeEventListener( orig, handler, true );
-					dataPriv.remove( doc, fix );
-
-				} else {
-					dataPriv.access( doc, fix, attaches );
-				}
-			}
-		};
-	} );
-}
-var location = window.location;
-
-var nonce = { guid: Date.now() };
-
-var rquery = ( /\?/ );
-
-
-
-// Cross-browser xml parsing
-jQuery.parseXML = function( data ) {
-	var xml, parserErrorElem;
-	if ( !data || typeof data !== "string" ) {
-		return null;
-	}
-
-	// Support: IE 9 - 11 only
-	// IE throws on parseFromString with invalid input.
-	try {
-		xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" );
-	} catch ( e ) {}
-
-	parserErrorElem = xml && xml.getElementsByTagName( "parsererror" )[ 0 ];
-	if ( !xml || parserErrorElem ) {
-		jQuery.error( "Invalid XML: " + (
-			parserErrorElem ?
-				jQuery.map( parserErrorElem.childNodes, function( el ) {
-					return el.textContent;
-				} ).join( "\n" ) :
-				data
-		) );
-	}
-	return xml;
-};
-
-
-var
-	rbracket = /\[\]$/,
-	rCRLF = /\r?\n/g,
-	rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i,
-	rsubmittable = /^(?:input|select|textarea|keygen)/i;
-
-function buildParams( prefix, obj, traditional, add ) {
-	var name;
-
-	if ( Array.isArray( obj ) ) {
-
-		// Serialize array item.
-		jQuery.each( obj, function( i, v ) {
-			if ( traditional || rbracket.test( prefix ) ) {
-
-				// Treat each array item as a scalar.
-				add( prefix, v );
-
-			} else {
-
-				// Item is non-scalar (array or object), encode its numeric index.
-				buildParams(
-					prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]",
-					v,
-					traditional,
-					add
-				);
-			}
-		} );
-
-	} else if ( !traditional && toType( obj ) === "object" ) {
-
-		// Serialize object item.
-		for ( name in obj ) {
-			buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add );
-		}
-
-	} else {
-
-		// Serialize scalar item.
-		add( prefix, obj );
-	}
-}
-
-// Serialize an array of form elements or a set of
-// key/values into a query string
-jQuery.param = function( a, traditional ) {
-	var prefix,
-		s = [],
-		add = function( key, valueOrFunction ) {
-
-			// If value is a function, invoke it and use its return value
-			var value = isFunction( valueOrFunction ) ?
-				valueOrFunction() :
-				valueOrFunction;
-
-			s[ s.length ] = encodeURIComponent( key ) + "=" +
-				encodeURIComponent( value == null ? "" : value );
-		};
-
-	if ( a == null ) {
-		return "";
-	}
-
-	// If an array was passed in, assume that it is an array of form elements.
-	if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) {
-
-		// Serialize the form elements
-		jQuery.each( a, function() {
-			add( this.name, this.value );
-		} );
-
-	} else {
-
-		// If traditional, encode the "old" way (the way 1.3.2 or older
-		// did it), otherwise encode params recursively.
-		for ( prefix in a ) {
-			buildParams( prefix, a[ prefix ], traditional, add );
-		}
-	}
-
-	// Return the resulting serialization
-	return s.join( "&" );
-};
-
-jQuery.fn.extend( {
-	serialize: function() {
-		return jQuery.param( this.serializeArray() );
-	},
-	serializeArray: function() {
-		return this.map( function() {
-
-			// Can add propHook for "elements" to filter or add form elements
-			var elements = jQuery.prop( this, "elements" );
-			return elements ? jQuery.makeArray( elements ) : this;
-		} ).filter( function() {
-			var type = this.type;
-
-			// Use .is( ":disabled" ) so that fieldset[disabled] works
-			return this.name && !jQuery( this ).is( ":disabled" ) &&
-				rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) &&
-				( this.checked || !rcheckableType.test( type ) );
-		} ).map( function( _i, elem ) {
-			var val = jQuery( this ).val();
-
-			if ( val == null ) {
-				return null;
-			}
-
-			if ( Array.isArray( val ) ) {
-				return jQuery.map( val, function( val ) {
-					return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-				} );
-			}
-
-			return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-		} ).get();
-	}
-} );
-
-
-var
-	r20 = /%20/g,
-	rhash = /#.*$/,
-	rantiCache = /([?&])_=[^&]*/,
-	rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg,
-
-	// #7653, #8125, #8152: local protocol detection
-	rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/,
-	rnoContent = /^(?:GET|HEAD)$/,
-	rprotocol = /^\/\//,
-
-	/* Prefilters
-	 * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example)
-	 * 2) These are called:
-	 *    - BEFORE asking for a transport
-	 *    - AFTER param serialization (s.data is a string if s.processData is true)
-	 * 3) key is the dataType
-	 * 4) the catchall symbol "*" can be used
-	 * 5) execution will start with transport dataType and THEN continue down to "*" if needed
-	 */
-	prefilters = {},
-
-	/* Transports bindings
-	 * 1) key is the dataType
-	 * 2) the catchall symbol "*" can be used
-	 * 3) selection will start with transport dataType and THEN go to "*" if needed
-	 */
-	transports = {},
-
-	// Avoid comment-prolog char sequence (#10098); must appease lint and evade compression
-	allTypes = "*/".concat( "*" ),
-
-	// Anchor tag for parsing the document origin
-	originAnchor = document.createElement( "a" );
-
-originAnchor.href = location.href;
-
-// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport
-function addToPrefiltersOrTransports( structure ) {
-
-	// dataTypeExpression is optional and defaults to "*"
-	return function( dataTypeExpression, func ) {
-
-		if ( typeof dataTypeExpression !== "string" ) {
-			func = dataTypeExpression;
-			dataTypeExpression = "*";
-		}
-
-		var dataType,
-			i = 0,
-			dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || [];
-
-		if ( isFunction( func ) ) {
-
-			// For each dataType in the dataTypeExpression
-			while ( ( dataType = dataTypes[ i++ ] ) ) {
-
-				// Prepend if requested
-				if ( dataType[ 0 ] === "+" ) {
-					dataType = dataType.slice( 1 ) || "*";
-					( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func );
-
-				// Otherwise append
-				} else {
-					( structure[ dataType ] = structure[ dataType ] || [] ).push( func );
-				}
-			}
-		}
-	};
-}
-
-// Base inspection function for prefilters and transports
-function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) {
-
-	var inspected = {},
-		seekingTransport = ( structure === transports );
-
-	function inspect( dataType ) {
-		var selected;
-		inspected[ dataType ] = true;
-		jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) {
-			var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR );
-			if ( typeof dataTypeOrTransport === "string" &&
-				!seekingTransport && !inspected[ dataTypeOrTransport ] ) {
-
-				options.dataTypes.unshift( dataTypeOrTransport );
-				inspect( dataTypeOrTransport );
-				return false;
-			} else if ( seekingTransport ) {
-				return !( selected = dataTypeOrTransport );
-			}
-		} );
-		return selected;
-	}
-
-	return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" );
-}
-
-// A special extend for ajax options
-// that takes "flat" options (not to be deep extended)
-// Fixes #9887
-function ajaxExtend( target, src ) {
-	var key, deep,
-		flatOptions = jQuery.ajaxSettings.flatOptions || {};
-
-	for ( key in src ) {
-		if ( src[ key ] !== undefined ) {
-			( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ];
-		}
-	}
-	if ( deep ) {
-		jQuery.extend( true, target, deep );
-	}
-
-	return target;
-}
-
-/* Handles responses to an ajax request:
- * - finds the right dataType (mediates between content-type and expected dataType)
- * - returns the corresponding response
- */
-function ajaxHandleResponses( s, jqXHR, responses ) {
-
-	var ct, type, finalDataType, firstDataType,
-		contents = s.contents,
-		dataTypes = s.dataTypes;
-
-	// Remove auto dataType and get content-type in the process
-	while ( dataTypes[ 0 ] === "*" ) {
-		dataTypes.shift();
-		if ( ct === undefined ) {
-			ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" );
-		}
-	}
-
-	// Check if we're dealing with a known content-type
-	if ( ct ) {
-		for ( type in contents ) {
-			if ( contents[ type ] && contents[ type ].test( ct ) ) {
-				dataTypes.unshift( type );
-				break;
-			}
-		}
-	}
-
-	// Check to see if we have a response for the expected dataType
-	if ( dataTypes[ 0 ] in responses ) {
-		finalDataType = dataTypes[ 0 ];
-	} else {
-
-		// Try convertible dataTypes
-		for ( type in responses ) {
-			if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) {
-				finalDataType = type;
-				break;
-			}
-			if ( !firstDataType ) {
-				firstDataType = type;
-			}
-		}
-
-		// Or just use first one
-		finalDataType = finalDataType || firstDataType;
-	}
-
-	// If we found a dataType
-	// We add the dataType to the list if needed
-	// and return the corresponding response
-	if ( finalDataType ) {
-		if ( finalDataType !== dataTypes[ 0 ] ) {
-			dataTypes.unshift( finalDataType );
-		}
-		return responses[ finalDataType ];
-	}
-}
-
-/* Chain conversions given the request and the original response
- * Also sets the responseXXX fields on the jqXHR instance
- */
-function ajaxConvert( s, response, jqXHR, isSuccess ) {
-	var conv2, current, conv, tmp, prev,
-		converters = {},
-
-		// Work with a copy of dataTypes in case we need to modify it for conversion
-		dataTypes = s.dataTypes.slice();
-
-	// Create converters map with lowercased keys
-	if ( dataTypes[ 1 ] ) {
-		for ( conv in s.converters ) {
-			converters[ conv.toLowerCase() ] = s.converters[ conv ];
-		}
-	}
-
-	current = dataTypes.shift();
-
-	// Convert to each sequential dataType
-	while ( current ) {
-
-		if ( s.responseFields[ current ] ) {
-			jqXHR[ s.responseFields[ current ] ] = response;
-		}
-
-		// Apply the dataFilter if provided
-		if ( !prev && isSuccess && s.dataFilter ) {
-			response = s.dataFilter( response, s.dataType );
-		}
-
-		prev = current;
-		current = dataTypes.shift();
-
-		if ( current ) {
-
-			// There's only work to do if current dataType is non-auto
-			if ( current === "*" ) {
-
-				current = prev;
-
-			// Convert response if prev dataType is non-auto and differs from current
-			} else if ( prev !== "*" && prev !== current ) {
-
-				// Seek a direct converter
-				conv = converters[ prev + " " + current ] || converters[ "* " + current ];
-
-				// If none found, seek a pair
-				if ( !conv ) {
-					for ( conv2 in converters ) {
-
-						// If conv2 outputs current
-						tmp = conv2.split( " " );
-						if ( tmp[ 1 ] === current ) {
-
-							// If prev can be converted to accepted input
-							conv = converters[ prev + " " + tmp[ 0 ] ] ||
-								converters[ "* " + tmp[ 0 ] ];
-							if ( conv ) {
-
-								// Condense equivalence converters
-								if ( conv === true ) {
-									conv = converters[ conv2 ];
-
-								// Otherwise, insert the intermediate dataType
-								} else if ( converters[ conv2 ] !== true ) {
-									current = tmp[ 0 ];
-									dataTypes.unshift( tmp[ 1 ] );
-								}
-								break;
-							}
-						}
-					}
-				}
-
-				// Apply converter (if not an equivalence)
-				if ( conv !== true ) {
-
-					// Unless errors are allowed to bubble, catch and return them
-					if ( conv && s.throws ) {
-						response = conv( response );
-					} else {
-						try {
-							response = conv( response );
-						} catch ( e ) {
-							return {
-								state: "parsererror",
-								error: conv ? e : "No conversion from " + prev + " to " + current
-							};
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return { state: "success", data: response };
-}
-
-jQuery.extend( {
-
-	// Counter for holding the number of active queries
-	active: 0,
-
-	// Last-Modified header cache for next request
-	lastModified: {},
-	etag: {},
-
-	ajaxSettings: {
-		url: location.href,
-		type: "GET",
-		isLocal: rlocalProtocol.test( location.protocol ),
-		global: true,
-		processData: true,
-		async: true,
-		contentType: "application/x-www-form-urlencoded; charset=UTF-8",
-
-		/*
-		timeout: 0,
-		data: null,
-		dataType: null,
-		username: null,
-		password: null,
-		cache: null,
-		throws: false,
-		traditional: false,
-		headers: {},
-		*/
-
-		accepts: {
-			"*": allTypes,
-			text: "text/plain",
-			html: "text/html",
-			xml: "application/xml, text/xml",
-			json: "application/json, text/javascript"
-		},
-
-		contents: {
-			xml: /\bxml\b/,
-			html: /\bhtml/,
-			json: /\bjson\b/
-		},
-
-		responseFields: {
-			xml: "responseXML",
-			text: "responseText",
-			json: "responseJSON"
-		},
-
-		// Data converters
-		// Keys separate source (or catchall "*") and destination types with a single space
-		converters: {
-
-			// Convert anything to text
-			"* text": String,
-
-			// Text to html (true = no transformation)
-			"text html": true,
-
-			// Evaluate text as a json expression
-			"text json": JSON.parse,
-
-			// Parse text as xml
-			"text xml": jQuery.parseXML
-		},
-
-		// For options that shouldn't be deep extended:
-		// you can add your own custom options here if
-		// and when you create one that shouldn't be
-		// deep extended (see ajaxExtend)
-		flatOptions: {
-			url: true,
-			context: true
-		}
-	},
-
-	// Creates a full fledged settings object into target
-	// with both ajaxSettings and settings fields.
-	// If target is omitted, writes into ajaxSettings.
-	ajaxSetup: function( target, settings ) {
-		return settings ?
-
-			// Building a settings object
-			ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) :
-
-			// Extending ajaxSettings
-			ajaxExtend( jQuery.ajaxSettings, target );
-	},
-
-	ajaxPrefilter: addToPrefiltersOrTransports( prefilters ),
-	ajaxTransport: addToPrefiltersOrTransports( transports ),
-
-	// Main method
-	ajax: function( url, options ) {
-
-		// If url is an object, simulate pre-1.5 signature
-		if ( typeof url === "object" ) {
-			options = url;
-			url = undefined;
-		}
-
-		// Force options to be an object
-		options = options || {};
-
-		var transport,
-
-			// URL without anti-cache param
-			cacheURL,
-
-			// Response headers
-			responseHeadersString,
-			responseHeaders,
-
-			// timeout handle
-			timeoutTimer,
-
-			// Url cleanup var
-			urlAnchor,
-
-			// Request state (becomes false upon send and true upon completion)
-			completed,
-
-			// To know if global events are to be dispatched
-			fireGlobals,
-
-			// Loop variable
-			i,
-
-			// uncached part of the url
-			uncached,
-
-			// Create the final options object
-			s = jQuery.ajaxSetup( {}, options ),
-
-			// Callbacks context
-			callbackContext = s.context || s,
-
-			// Context for global events is callbackContext if it is a DOM node or jQuery collection
-			globalEventContext = s.context &&
-				( callbackContext.nodeType || callbackContext.jquery ) ?
-				jQuery( callbackContext ) :
-				jQuery.event,
-
-			// Deferreds
-			deferred = jQuery.Deferred(),
-			completeDeferred = jQuery.Callbacks( "once memory" ),
-
-			// Status-dependent callbacks
-			statusCode = s.statusCode || {},
-
-			// Headers (they are sent all at once)
-			requestHeaders = {},
-			requestHeadersNames = {},
-
-			// Default abort message
-			strAbort = "canceled",
-
-			// Fake xhr
-			jqXHR = {
-				readyState: 0,
-
-				// Builds headers hashtable if needed
-				getResponseHeader: function( key ) {
-					var match;
-					if ( completed ) {
-						if ( !responseHeaders ) {
-							responseHeaders = {};
-							while ( ( match = rheaders.exec( responseHeadersString ) ) ) {
-								responseHeaders[ match[ 1 ].toLowerCase() + " " ] =
-									( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] )
-										.concat( match[ 2 ] );
-							}
-						}
-						match = responseHeaders[ key.toLowerCase() + " " ];
-					}
-					return match == null ? null : match.join( ", " );
-				},
-
-				// Raw string
-				getAllResponseHeaders: function() {
-					return completed ? responseHeadersString : null;
-				},
-
-				// Caches the header
-				setRequestHeader: function( name, value ) {
-					if ( completed == null ) {
-						name = requestHeadersNames[ name.toLowerCase() ] =
-							requestHeadersNames[ name.toLowerCase() ] || name;
-						requestHeaders[ name ] = value;
-					}
-					return this;
-				},
-
-				// Overrides response content-type header
-				overrideMimeType: function( type ) {
-					if ( completed == null ) {
-						s.mimeType = type;
-					}
-					return this;
-				},
-
-				// Status-dependent callbacks
-				statusCode: function( map ) {
-					var code;
-					if ( map ) {
-						if ( completed ) {
-
-							// Execute the appropriate callbacks
-							jqXHR.always( map[ jqXHR.status ] );
-						} else {
-
-							// Lazy-add the new callbacks in a way that preserves old ones
-							for ( code in map ) {
-								statusCode[ code ] = [ statusCode[ code ], map[ code ] ];
-							}
-						}
-					}
-					return this;
-				},
-
-				// Cancel the request
-				abort: function( statusText ) {
-					var finalText = statusText || strAbort;
-					if ( transport ) {
-						transport.abort( finalText );
-					}
-					done( 0, finalText );
-					return this;
-				}
-			};
-
-		// Attach deferreds
-		deferred.promise( jqXHR );
-
-		// Add protocol if not provided (prefilters might expect it)
-		// Handle falsy url in the settings object (#10093: consistency with old signature)
-		// We also use the url parameter if available
-		s.url = ( ( url || s.url || location.href ) + "" )
-			.replace( rprotocol, location.protocol + "//" );
-
-		// Alias method option to type as per ticket #12004
-		s.type = options.method || options.type || s.method || s.type;
-
-		// Extract dataTypes list
-		s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ];
-
-		// A cross-domain request is in order when the origin doesn't match the current origin.
-		if ( s.crossDomain == null ) {
-			urlAnchor = document.createElement( "a" );
-
-			// Support: IE <=8 - 11, Edge 12 - 15
-			// IE throws exception on accessing the href property if url is malformed,
-			// e.g. http://example.com:80x/
-			try {
-				urlAnchor.href = s.url;
-
-				// Support: IE <=8 - 11 only
-				// Anchor's host property isn't correctly set when s.url is relative
-				urlAnchor.href = urlAnchor.href;
-				s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !==
-					urlAnchor.protocol + "//" + urlAnchor.host;
-			} catch ( e ) {
-
-				// If there is an error parsing the URL, assume it is crossDomain,
-				// it can be rejected by the transport if it is invalid
-				s.crossDomain = true;
-			}
-		}
-
-		// Convert data if not already a string
-		if ( s.data && s.processData && typeof s.data !== "string" ) {
-			s.data = jQuery.param( s.data, s.traditional );
-		}
-
-		// Apply prefilters
-		inspectPrefiltersOrTransports( prefilters, s, options, jqXHR );
-
-		// If request was aborted inside a prefilter, stop there
-		if ( completed ) {
-			return jqXHR;
-		}
-
-		// We can fire global events as of now if asked to
-		// Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118)
-		fireGlobals = jQuery.event && s.global;
-
-		// Watch for a new set of requests
-		if ( fireGlobals && jQuery.active++ === 0 ) {
-			jQuery.event.trigger( "ajaxStart" );
-		}
-
-		// Uppercase the type
-		s.type = s.type.toUpperCase();
-
-		// Determine if request has content
-		s.hasContent = !rnoContent.test( s.type );
-
-		// Save the URL in case we're toying with the If-Modified-Since
-		// and/or If-None-Match header later on
-		// Remove hash to simplify url manipulation
-		cacheURL = s.url.replace( rhash, "" );
-
-		// More options handling for requests with no content
-		if ( !s.hasContent ) {
-
-			// Remember the hash so we can put it back
-			uncached = s.url.slice( cacheURL.length );
-
-			// If data is available and should be processed, append data to url
-			if ( s.data && ( s.processData || typeof s.data === "string" ) ) {
-				cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data;
-
-				// #9682: remove data so that it's not used in an eventual retry
-				delete s.data;
-			}
-
-			// Add or update anti-cache param if needed
-			if ( s.cache === false ) {
-				cacheURL = cacheURL.replace( rantiCache, "$1" );
-				uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) +
-					uncached;
-			}
-
-			// Put hash and anti-cache on the URL that will be requested (gh-1732)
-			s.url = cacheURL + uncached;
-
-		// Change '%20' to '+' if this is encoded form body content (gh-2658)
-		} else if ( s.data && s.processData &&
-			( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) {
-			s.data = s.data.replace( r20, "+" );
-		}
-
-		// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-		if ( s.ifModified ) {
-			if ( jQuery.lastModified[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] );
-			}
-			if ( jQuery.etag[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] );
-			}
-		}
-
-		// Set the correct header, if data is being sent
-		if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) {
-			jqXHR.setRequestHeader( "Content-Type", s.contentType );
-		}
-
-		// Set the Accepts header for the server, depending on the dataType
-		jqXHR.setRequestHeader(
-			"Accept",
-			s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ?
-				s.accepts[ s.dataTypes[ 0 ] ] +
-					( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) :
-				s.accepts[ "*" ]
-		);
-
-		// Check for headers option
-		for ( i in s.headers ) {
-			jqXHR.setRequestHeader( i, s.headers[ i ] );
-		}
-
-		// Allow custom headers/mimetypes and early abort
-		if ( s.beforeSend &&
-			( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) {
-
-			// Abort if not done already and return
-			return jqXHR.abort();
-		}
-
-		// Aborting is no longer a cancellation
-		strAbort = "abort";
-
-		// Install callbacks on deferreds
-		completeDeferred.add( s.complete );
-		jqXHR.done( s.success );
-		jqXHR.fail( s.error );
-
-		// Get transport
-		transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR );
-
-		// If no transport, we auto-abort
-		if ( !transport ) {
-			done( -1, "No Transport" );
-		} else {
-			jqXHR.readyState = 1;
-
-			// Send global event
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] );
-			}
-
-			// If request was aborted inside ajaxSend, stop there
-			if ( completed ) {
-				return jqXHR;
-			}
-
-			// Timeout
-			if ( s.async && s.timeout > 0 ) {
-				timeoutTimer = window.setTimeout( function() {
-					jqXHR.abort( "timeout" );
-				}, s.timeout );
-			}
-
-			try {
-				completed = false;
-				transport.send( requestHeaders, done );
-			} catch ( e ) {
-
-				// Rethrow post-completion exceptions
-				if ( completed ) {
-					throw e;
-				}
-
-				// Propagate others as results
-				done( -1, e );
-			}
-		}
-
-		// Callback for when everything is done
-		function done( status, nativeStatusText, responses, headers ) {
-			var isSuccess, success, error, response, modified,
-				statusText = nativeStatusText;
-
-			// Ignore repeat invocations
-			if ( completed ) {
-				return;
-			}
-
-			completed = true;
-
-			// Clear timeout if it exists
-			if ( timeoutTimer ) {
-				window.clearTimeout( timeoutTimer );
-			}
-
-			// Dereference transport for early garbage collection
-			// (no matter how long the jqXHR object will be used)
-			transport = undefined;
-
-			// Cache response headers
-			responseHeadersString = headers || "";
-
-			// Set readyState
-			jqXHR.readyState = status > 0 ? 4 : 0;
-
-			// Determine if successful
-			isSuccess = status >= 200 && status < 300 || status === 304;
-
-			// Get response data
-			if ( responses ) {
-				response = ajaxHandleResponses( s, jqXHR, responses );
-			}
-
-			// Use a noop converter for missing script but not if jsonp
-			if ( !isSuccess &&
-				jQuery.inArray( "script", s.dataTypes ) > -1 &&
-				jQuery.inArray( "json", s.dataTypes ) < 0 ) {
-				s.converters[ "text script" ] = function() {};
-			}
-
-			// Convert no matter what (that way responseXXX fields are always set)
-			response = ajaxConvert( s, response, jqXHR, isSuccess );
-
-			// If successful, handle type chaining
-			if ( isSuccess ) {
-
-				// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-				if ( s.ifModified ) {
-					modified = jqXHR.getResponseHeader( "Last-Modified" );
-					if ( modified ) {
-						jQuery.lastModified[ cacheURL ] = modified;
-					}
-					modified = jqXHR.getResponseHeader( "etag" );
-					if ( modified ) {
-						jQuery.etag[ cacheURL ] = modified;
-					}
-				}
-
-				// if no content
-				if ( status === 204 || s.type === "HEAD" ) {
-					statusText = "nocontent";
-
-				// if not modified
-				} else if ( status === 304 ) {
-					statusText = "notmodified";
-
-				// If we have data, let's convert it
-				} else {
-					statusText = response.state;
-					success = response.data;
-					error = response.error;
-					isSuccess = !error;
-				}
-			} else {
-
-				// Extract error from statusText and normalize for non-aborts
-				error = statusText;
-				if ( status || !statusText ) {
-					statusText = "error";
-					if ( status < 0 ) {
-						status = 0;
-					}
-				}
-			}
-
-			// Set data for the fake xhr object
-			jqXHR.status = status;
-			jqXHR.statusText = ( nativeStatusText || statusText ) + "";
-
-			// Success/Error
-			if ( isSuccess ) {
-				deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] );
-			} else {
-				deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] );
-			}
-
-			// Status-dependent callbacks
-			jqXHR.statusCode( statusCode );
-			statusCode = undefined;
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError",
-					[ jqXHR, s, isSuccess ? success : error ] );
-			}
-
-			// Complete
-			completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] );
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] );
-
-				// Handle the global AJAX counter
-				if ( !( --jQuery.active ) ) {
-					jQuery.event.trigger( "ajaxStop" );
-				}
-			}
-		}
-
-		return jqXHR;
-	},
-
-	getJSON: function( url, data, callback ) {
-		return jQuery.get( url, data, callback, "json" );
-	},
-
-	getScript: function( url, callback ) {
-		return jQuery.get( url, undefined, callback, "script" );
-	}
-} );
-
-jQuery.each( [ "get", "post" ], function( _i, method ) {
-	jQuery[ method ] = function( url, data, callback, type ) {
-
-		// Shift arguments if data argument was omitted
-		if ( isFunction( data ) ) {
-			type = type || callback;
-			callback = data;
-			data = undefined;
-		}
-
-		// The url can be an options object (which then must have .url)
-		return jQuery.ajax( jQuery.extend( {
-			url: url,
-			type: method,
-			dataType: type,
-			data: data,
-			success: callback
-		}, jQuery.isPlainObject( url ) && url ) );
-	};
-} );
-
-jQuery.ajaxPrefilter( function( s ) {
-	var i;
-	for ( i in s.headers ) {
-		if ( i.toLowerCase() === "content-type" ) {
-			s.contentType = s.headers[ i ] || "";
-		}
-	}
-} );
-
-
-jQuery._evalUrl = function( url, options, doc ) {
-	return jQuery.ajax( {
-		url: url,
-
-		// Make this explicit, since user can override this through ajaxSetup (#11264)
-		type: "GET",
-		dataType: "script",
-		cache: true,
-		async: false,
-		global: false,
-
-		// Only evaluate the response if it is successful (gh-4126)
-		// dataFilter is not invoked for failure responses, so using it instead
-		// of the default converter is kludgy but it works.
-		converters: {
-			"text script": function() {}
-		},
-		dataFilter: function( response ) {
-			jQuery.globalEval( response, options, doc );
-		}
-	} );
-};
-
-
-jQuery.fn.extend( {
-	wrapAll: function( html ) {
-		var wrap;
-
-		if ( this[ 0 ] ) {
-			if ( isFunction( html ) ) {
-				html = html.call( this[ 0 ] );
-			}
-
-			// The elements to wrap the target around
-			wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true );
-
-			if ( this[ 0 ].parentNode ) {
-				wrap.insertBefore( this[ 0 ] );
-			}
-
-			wrap.map( function() {
-				var elem = this;
-
-				while ( elem.firstElementChild ) {
-					elem = elem.firstElementChild;
-				}
-
-				return elem;
-			} ).append( this );
-		}
-
-		return this;
-	},
-
-	wrapInner: function( html ) {
-		if ( isFunction( html ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).wrapInner( html.call( this, i ) );
-			} );
-		}
-
-		return this.each( function() {
-			var self = jQuery( this ),
-				contents = self.contents();
-
-			if ( contents.length ) {
-				contents.wrapAll( html );
-
-			} else {
-				self.append( html );
-			}
-		} );
-	},
-
-	wrap: function( html ) {
-		var htmlIsFunction = isFunction( html );
-
-		return this.each( function( i ) {
-			jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html );
-		} );
-	},
-
-	unwrap: function( selector ) {
-		this.parent( selector ).not( "body" ).each( function() {
-			jQuery( this ).replaceWith( this.childNodes );
-		} );
-		return this;
-	}
-} );
-
-
-jQuery.expr.pseudos.hidden = function( elem ) {
-	return !jQuery.expr.pseudos.visible( elem );
-};
-jQuery.expr.pseudos.visible = function( elem ) {
-	return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length );
-};
-
-
-
-
-jQuery.ajaxSettings.xhr = function() {
-	try {
-		return new window.XMLHttpRequest();
-	} catch ( e ) {}
-};
-
-var xhrSuccessStatus = {
-
-		// File protocol always yields status code 0, assume 200
-		0: 200,
-
-		// Support: IE <=9 only
-		// #1450: sometimes IE returns 1223 when it should be 204
-		1223: 204
-	},
-	xhrSupported = jQuery.ajaxSettings.xhr();
-
-support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported );
-support.ajax = xhrSupported = !!xhrSupported;
-
-jQuery.ajaxTransport( function( options ) {
-	var callback, errorCallback;
-
-	// Cross domain only allowed if supported through XMLHttpRequest
-	if ( support.cors || xhrSupported && !options.crossDomain ) {
-		return {
-			send: function( headers, complete ) {
-				var i,
-					xhr = options.xhr();
-
-				xhr.open(
-					options.type,
-					options.url,
-					options.async,
-					options.username,
-					options.password
-				);
-
-				// Apply custom fields if provided
-				if ( options.xhrFields ) {
-					for ( i in options.xhrFields ) {
-						xhr[ i ] = options.xhrFields[ i ];
-					}
-				}
-
-				// Override mime type if needed
-				if ( options.mimeType && xhr.overrideMimeType ) {
-					xhr.overrideMimeType( options.mimeType );
-				}
-
-				// X-Requested-With header
-				// For cross-domain requests, seeing as conditions for a preflight are
-				// akin to a jigsaw puzzle, we simply never set it to be sure.
-				// (it can always be set on a per-request basis or even using ajaxSetup)
-				// For same-domain requests, won't change header if already provided.
-				if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) {
-					headers[ "X-Requested-With" ] = "XMLHttpRequest";
-				}
-
-				// Set headers
-				for ( i in headers ) {
-					xhr.setRequestHeader( i, headers[ i ] );
-				}
-
-				// Callback
-				callback = function( type ) {
-					return function() {
-						if ( callback ) {
-							callback = errorCallback = xhr.onload =
-								xhr.onerror = xhr.onabort = xhr.ontimeout =
-									xhr.onreadystatechange = null;
-
-							if ( type === "abort" ) {
-								xhr.abort();
-							} else if ( type === "error" ) {
-
-								// Support: IE <=9 only
-								// On a manual native abort, IE9 throws
-								// errors on any property access that is not readyState
-								if ( typeof xhr.status !== "number" ) {
-									complete( 0, "error" );
-								} else {
-									complete(
-
-										// File: protocol always yields status 0; see #8605, #14207
-										xhr.status,
-										xhr.statusText
-									);
-								}
-							} else {
-								complete(
-									xhrSuccessStatus[ xhr.status ] || xhr.status,
-									xhr.statusText,
-
-									// Support: IE <=9 only
-									// IE9 has no XHR2 but throws on binary (trac-11426)
-									// For XHR2 non-text, let the caller handle it (gh-2498)
-									( xhr.responseType || "text" ) !== "text"  ||
-									typeof xhr.responseText !== "string" ?
-										{ binary: xhr.response } :
-										{ text: xhr.responseText },
-									xhr.getAllResponseHeaders()
-								);
-							}
-						}
-					};
-				};
-
-				// Listen to events
-				xhr.onload = callback();
-				errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" );
-
-				// Support: IE 9 only
-				// Use onreadystatechange to replace onabort
-				// to handle uncaught aborts
-				if ( xhr.onabort !== undefined ) {
-					xhr.onabort = errorCallback;
-				} else {
-					xhr.onreadystatechange = function() {
-
-						// Check readyState before timeout as it changes
-						if ( xhr.readyState === 4 ) {
-
-							// Allow onerror to be called first,
-							// but that will not handle a native abort
-							// Also, save errorCallback to a variable
-							// as xhr.onerror cannot be accessed
-							window.setTimeout( function() {
-								if ( callback ) {
-									errorCallback();
-								}
-							} );
-						}
-					};
-				}
-
-				// Create the abort callback
-				callback = callback( "abort" );
-
-				try {
-
-					// Do send the request (this may raise an exception)
-					xhr.send( options.hasContent && options.data || null );
-				} catch ( e ) {
-
-					// #14683: Only rethrow if this hasn't been notified as an error yet
-					if ( callback ) {
-						throw e;
-					}
-				}
-			},
-
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432)
-jQuery.ajaxPrefilter( function( s ) {
-	if ( s.crossDomain ) {
-		s.contents.script = false;
-	}
-} );
-
-// Install script dataType
-jQuery.ajaxSetup( {
-	accepts: {
-		script: "text/javascript, application/javascript, " +
-			"application/ecmascript, application/x-ecmascript"
-	},
-	contents: {
-		script: /\b(?:java|ecma)script\b/
-	},
-	converters: {
-		"text script": function( text ) {
-			jQuery.globalEval( text );
-			return text;
-		}
-	}
-} );
-
-// Handle cache's special case and crossDomain
-jQuery.ajaxPrefilter( "script", function( s ) {
-	if ( s.cache === undefined ) {
-		s.cache = false;
-	}
-	if ( s.crossDomain ) {
-		s.type = "GET";
-	}
-} );
-
-// Bind script tag hack transport
-jQuery.ajaxTransport( "script", function( s ) {
-
-	// This transport only deals with cross domain or forced-by-attrs requests
-	if ( s.crossDomain || s.scriptAttrs ) {
-		var script, callback;
-		return {
-			send: function( _, complete ) {
-				script = jQuery( "<script>" )
-					.attr( s.scriptAttrs || {} )
-					.prop( { charset: s.scriptCharset, src: s.url } )
-					.on( "load error", callback = function( evt ) {
-						script.remove();
-						callback = null;
-						if ( evt ) {
-							complete( evt.type === "error" ? 404 : 200, evt.type );
-						}
-					} );
-
-				// Use native DOM manipulation to avoid our domManip AJAX trickery
-				document.head.appendChild( script[ 0 ] );
-			},
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-var oldCallbacks = [],
-	rjsonp = /(=)\?(?=&|$)|\?\?/;
-
-// Default jsonp settings
-jQuery.ajaxSetup( {
-	jsonp: "callback",
-	jsonpCallback: function() {
-		var callback = oldCallbacks.pop() || ( jQuery.expando + "_" + ( nonce.guid++ ) );
-		this[ callback ] = true;
-		return callback;
-	}
-} );
-
-// Detect, normalize options and install callbacks for jsonp requests
-jQuery.ajaxPrefilter( "json jsonp", function( s, originalSettings, jqXHR ) {
-
-	var callbackName, overwritten, responseContainer,
-		jsonProp = s.jsonp !== false && ( rjsonp.test( s.url ) ?
-			"url" :
-			typeof s.data === "string" &&
-				( s.contentType || "" )
-					.indexOf( "application/x-www-form-urlencoded" ) === 0 &&
-				rjsonp.test( s.data ) && "data"
-		);
-
-	// Handle iff the expected data type is "jsonp" or we have a parameter to set
-	if ( jsonProp || s.dataTypes[ 0 ] === "jsonp" ) {
-
-		// Get callback name, remembering preexisting value associated with it
-		callbackName = s.jsonpCallback = isFunction( s.jsonpCallback ) ?
-			s.jsonpCallback() :
-			s.jsonpCallback;
-
-		// Insert callback into url or form data
-		if ( jsonProp ) {
-			s[ jsonProp ] = s[ jsonProp ].replace( rjsonp, "$1" + callbackName );
-		} else if ( s.jsonp !== false ) {
-			s.url += ( rquery.test( s.url ) ? "&" : "?" ) + s.jsonp + "=" + callbackName;
-		}
-
-		// Use data converter to retrieve json after script execution
-		s.converters[ "script json" ] = function() {
-			if ( !responseContainer ) {
-				jQuery.error( callbackName + " was not called" );
-			}
-			return responseContainer[ 0 ];
-		};
-
-		// Force json dataType
-		s.dataTypes[ 0 ] = "json";
-
-		// Install callback
-		overwritten = window[ callbackName ];
-		window[ callbackName ] = function() {
-			responseContainer = arguments;
-		};
-
-		// Clean-up function (fires after converters)
-		jqXHR.always( function() {
-
-			// If previous value didn't exist - remove it
-			if ( overwritten === undefined ) {
-				jQuery( window ).removeProp( callbackName );
-
-			// Otherwise restore preexisting value
-			} else {
-				window[ callbackName ] = overwritten;
-			}
-
-			// Save back as free
-			if ( s[ callbackName ] ) {
-
-				// Make sure that re-using the options doesn't screw things around
-				s.jsonpCallback = originalSettings.jsonpCallback;
-
-				// Save the callback name for future use
-				oldCallbacks.push( callbackName );
-			}
-
-			// Call if it was a function and we have a response
-			if ( responseContainer && isFunction( overwritten ) ) {
-				overwritten( responseContainer[ 0 ] );
-			}
-
-			responseContainer = overwritten = undefined;
-		} );
-
-		// Delegate to script
-		return "script";
-	}
-} );
-
-
-
-
-// Support: Safari 8 only
-// In Safari 8 documents created via document.implementation.createHTMLDocument
-// collapse sibling forms: the second one becomes a child of the first one.
-// Because of that, this security measure has to be disabled in Safari 8.
-// https://bugs.webkit.org/show_bug.cgi?id=137337
-support.createHTMLDocument = ( function() {
-	var body = document.implementation.createHTMLDocument( "" ).body;
-	body.innerHTML = "<form></form><form></form>";
-	return body.childNodes.length === 2;
-} )();
-
-
-// Argument "data" should be string of html
-// context (optional): If specified, the fragment will be created in this context,
-// defaults to document
-// keepScripts (optional): If true, will include scripts passed in the html string
-jQuery.parseHTML = function( data, context, keepScripts ) {
-	if ( typeof data !== "string" ) {
-		return [];
-	}
-	if ( typeof context === "boolean" ) {
-		keepScripts = context;
-		context = false;
-	}
-
-	var base, parsed, scripts;
-
-	if ( !context ) {
-
-		// Stop scripts or inline event handlers from being executed immediately
-		// by using document.implementation
-		if ( support.createHTMLDocument ) {
-			context = document.implementation.createHTMLDocument( "" );
-
-			// Set the base href for the created document
-			// so any parsed elements with URLs
-			// are based on the document's URL (gh-2965)
-			base = context.createElement( "base" );
-			base.href = document.location.href;
-			context.head.appendChild( base );
-		} else {
-			context = document;
-		}
-	}
-
-	parsed = rsingleTag.exec( data );
-	scripts = !keepScripts && [];
-
-	// Single tag
-	if ( parsed ) {
-		return [ context.createElement( parsed[ 1 ] ) ];
-	}
-
-	parsed = buildFragment( [ data ], context, scripts );
-
-	if ( scripts && scripts.length ) {
-		jQuery( scripts ).remove();
-	}
-
-	return jQuery.merge( [], parsed.childNodes );
-};
-
-
-/**
- * Load a url into a page
- */
-jQuery.fn.load = function( url, params, callback ) {
-	var selector, type, response,
-		self = this,
-		off = url.indexOf( " " );
-
-	if ( off > -1 ) {
-		selector = stripAndCollapse( url.slice( off ) );
-		url = url.slice( 0, off );
-	}
-
-	// If it's a function
-	if ( isFunction( params ) ) {
-
-		// We assume that it's the callback
-		callback = params;
-		params = undefined;
-
-	// Otherwise, build a param string
-	} else if ( params && typeof params === "object" ) {
-		type = "POST";
-	}
-
-	// If we have elements to modify, make the request
-	if ( self.length > 0 ) {
-		jQuery.ajax( {
-			url: url,
-
-			// If "type" variable is undefined, then "GET" method will be used.
-			// Make value of this field explicit since
-			// user can override it through ajaxSetup method
-			type: type || "GET",
-			dataType: "html",
-			data: params
-		} ).done( function( responseText ) {
-
-			// Save response for use in complete callback
-			response = arguments;
-
-			self.html( selector ?
-
-				// If a selector was specified, locate the right elements in a dummy div
-				// Exclude scripts to avoid IE 'Permission Denied' errors
-				jQuery( "<div>" ).append( jQuery.parseHTML( responseText ) ).find( selector ) :
-
-				// Otherwise use the full result
-				responseText );
-
-		// If the request succeeds, this function gets "data", "status", "jqXHR"
-		// but they are ignored because response was set above.
-		// If it fails, this function gets "jqXHR", "status", "error"
-		} ).always( callback && function( jqXHR, status ) {
-			self.each( function() {
-				callback.apply( this, response || [ jqXHR.responseText, status, jqXHR ] );
-			} );
-		} );
-	}
-
-	return this;
-};
-
-
-
-
-jQuery.expr.pseudos.animated = function( elem ) {
-	return jQuery.grep( jQuery.timers, function( fn ) {
-		return elem === fn.elem;
-	} ).length;
-};
-
-
-
-
-jQuery.offset = {
-	setOffset: function( elem, options, i ) {
-		var curPosition, curLeft, curCSSTop, curTop, curOffset, curCSSLeft, calculatePosition,
-			position = jQuery.css( elem, "position" ),
-			curElem = jQuery( elem ),
-			props = {};
-
-		// Set position first, in-case top/left are set even on static elem
-		if ( position === "static" ) {
-			elem.style.position = "relative";
-		}
-
-		curOffset = curElem.offset();
-		curCSSTop = jQuery.css( elem, "top" );
-		curCSSLeft = jQuery.css( elem, "left" );
-		calculatePosition = ( position === "absolute" || position === "fixed" ) &&
-			( curCSSTop + curCSSLeft ).indexOf( "auto" ) > -1;
-
-		// Need to be able to calculate position if either
-		// top or left is auto and position is either absolute or fixed
-		if ( calculatePosition ) {
-			curPosition = curElem.position();
-			curTop = curPosition.top;
-			curLeft = curPosition.left;
-
-		} else {
-			curTop = parseFloat( curCSSTop ) || 0;
-			curLeft = parseFloat( curCSSLeft ) || 0;
-		}
-
-		if ( isFunction( options ) ) {
-
-			// Use jQuery.extend here to allow modification of coordinates argument (gh-1848)
-			options = options.call( elem, i, jQuery.extend( {}, curOffset ) );
-		}
-
-		if ( options.top != null ) {
-			props.top = ( options.top - curOffset.top ) + curTop;
-		}
-		if ( options.left != null ) {
-			props.left = ( options.left - curOffset.left ) + curLeft;
-		}
-
-		if ( "using" in options ) {
-			options.using.call( elem, props );
-
-		} else {
-			curElem.css( props );
-		}
-	}
-};
-
-jQuery.fn.extend( {
-
-	// offset() relates an element's border box to the document origin
-	offset: function( options ) {
-
-		// Preserve chaining for setter
-		if ( arguments.length ) {
-			return options === undefined ?
-				this :
-				this.each( function( i ) {
-					jQuery.offset.setOffset( this, options, i );
-				} );
-		}
-
-		var rect, win,
-			elem = this[ 0 ];
-
-		if ( !elem ) {
-			return;
-		}
-
-		// Return zeros for disconnected and hidden (display: none) elements (gh-2310)
-		// Support: IE <=11 only
-		// Running getBoundingClientRect on a
-		// disconnected node in IE throws an error
-		if ( !elem.getClientRects().length ) {
-			return { top: 0, left: 0 };
-		}
-
-		// Get document-relative position by adding viewport scroll to viewport-relative gBCR
-		rect = elem.getBoundingClientRect();
-		win = elem.ownerDocument.defaultView;
-		return {
-			top: rect.top + win.pageYOffset,
-			left: rect.left + win.pageXOffset
-		};
-	},
-
-	// position() relates an element's margin box to its offset parent's padding box
-	// This corresponds to the behavior of CSS absolute positioning
-	position: function() {
-		if ( !this[ 0 ] ) {
-			return;
-		}
-
-		var offsetParent, offset, doc,
-			elem = this[ 0 ],
-			parentOffset = { top: 0, left: 0 };
-
-		// position:fixed elements are offset from the viewport, which itself always has zero offset
-		if ( jQuery.css( elem, "position" ) === "fixed" ) {
-
-			// Assume position:fixed implies availability of getBoundingClientRect
-			offset = elem.getBoundingClientRect();
-
-		} else {
-			offset = this.offset();
-
-			// Account for the *real* offset parent, which can be the document or its root element
-			// when a statically positioned element is identified
-			doc = elem.ownerDocument;
-			offsetParent = elem.offsetParent || doc.documentElement;
-			while ( offsetParent &&
-				( offsetParent === doc.body || offsetParent === doc.documentElement ) &&
-				jQuery.css( offsetParent, "position" ) === "static" ) {
-
-				offsetParent = offsetParent.parentNode;
-			}
-			if ( offsetParent && offsetParent !== elem && offsetParent.nodeType === 1 ) {
-
-				// Incorporate borders into its offset, since they are outside its content origin
-				parentOffset = jQuery( offsetParent ).offset();
-				parentOffset.top += jQuery.css( offsetParent, "borderTopWidth", true );
-				parentOffset.left += jQuery.css( offsetParent, "borderLeftWidth", true );
-			}
-		}
-
-		// Subtract parent offsets and element margins
-		return {
-			top: offset.top - parentOffset.top - jQuery.css( elem, "marginTop", true ),
-			left: offset.left - parentOffset.left - jQuery.css( elem, "marginLeft", true )
-		};
-	},
-
-	// This method will return documentElement in the following cases:
-	// 1) For the element inside the iframe without offsetParent, this method will return
-	//    documentElement of the parent window
-	// 2) For the hidden or detached element
-	// 3) For body or html element, i.e. in case of the html node - it will return itself
-	//
-	// but those exceptions were never presented as a real life use-cases
-	// and might be considered as more preferable results.
-	//
-	// This logic, however, is not guaranteed and can change at any point in the future
-	offsetParent: function() {
-		return this.map( function() {
-			var offsetParent = this.offsetParent;
-
-			while ( offsetParent && jQuery.css( offsetParent, "position" ) === "static" ) {
-				offsetParent = offsetParent.offsetParent;
-			}
-
-			return offsetParent || documentElement;
-		} );
-	}
-} );
-
-// Create scrollLeft and scrollTop methods
-jQuery.each( { scrollLeft: "pageXOffset", scrollTop: "pageYOffset" }, function( method, prop ) {
-	var top = "pageYOffset" === prop;
-
-	jQuery.fn[ method ] = function( val ) {
-		return access( this, function( elem, method, val ) {
-
-			// Coalesce documents and windows
-			var win;
-			if ( isWindow( elem ) ) {
-				win = elem;
-			} else if ( elem.nodeType === 9 ) {
-				win = elem.defaultView;
-			}
-
-			if ( val === undefined ) {
-				return win ? win[ prop ] : elem[ method ];
-			}
-
-			if ( win ) {
-				win.scrollTo(
-					!top ? val : win.pageXOffset,
-					top ? val : win.pageYOffset
-				);
-
-			} else {
-				elem[ method ] = val;
-			}
-		}, method, val, arguments.length );
-	};
-} );
-
-// Support: Safari <=7 - 9.1, Chrome <=37 - 49
-// Add the top/left cssHooks using jQuery.fn.position
-// Webkit bug: https://bugs.webkit.org/show_bug.cgi?id=29084
-// Blink bug: https://bugs.chromium.org/p/chromium/issues/detail?id=589347
-// getComputedStyle returns percent when specified for top/left/bottom/right;
-// rather than make the css module depend on the offset module, just check for it here
-jQuery.each( [ "top", "left" ], function( _i, prop ) {
-	jQuery.cssHooks[ prop ] = addGetHookIf( support.pixelPosition,
-		function( elem, computed ) {
-			if ( computed ) {
-				computed = curCSS( elem, prop );
-
-				// If curCSS returns percentage, fallback to offset
-				return rnumnonpx.test( computed ) ?
-					jQuery( elem ).position()[ prop ] + "px" :
-					computed;
-			}
-		}
-	);
-} );
-
-
-// Create innerHeight, innerWidth, height, width, outerHeight and outerWidth methods
-jQuery.each( { Height: "height", Width: "width" }, function( name, type ) {
-	jQuery.each( {
-		padding: "inner" + name,
-		content: type,
-		"": "outer" + name
-	}, function( defaultExtra, funcName ) {
-
-		// Margin is only for outerHeight, outerWidth
-		jQuery.fn[ funcName ] = function( margin, value ) {
-			var chainable = arguments.length && ( defaultExtra || typeof margin !== "boolean" ),
-				extra = defaultExtra || ( margin === true || value === true ? "margin" : "border" );
-
-			return access( this, function( elem, type, value ) {
-				var doc;
-
-				if ( isWindow( elem ) ) {
-
-					// $( window ).outerWidth/Height return w/h including scrollbars (gh-1729)
-					return funcName.indexOf( "outer" ) === 0 ?
-						elem[ "inner" + name ] :
-						elem.document.documentElement[ "client" + name ];
-				}
-
-				// Get document width or height
-				if ( elem.nodeType === 9 ) {
-					doc = elem.documentElement;
-
-					// Either scroll[Width/Height] or offset[Width/Height] or client[Width/Height],
-					// whichever is greatest
-					return Math.max(
-						elem.body[ "scroll" + name ], doc[ "scroll" + name ],
-						elem.body[ "offset" + name ], doc[ "offset" + name ],
-						doc[ "client" + name ]
-					);
-				}
-
-				return value === undefined ?
-
-					// Get width or height on the element, requesting but not forcing parseFloat
-					jQuery.css( elem, type, extra ) :
-
-					// Set width or height on the element
-					jQuery.style( elem, type, value, extra );
-			}, type, chainable ? margin : undefined, chainable );
-		};
-	} );
-} );
-
-
-jQuery.each( [
-	"ajaxStart",
-	"ajaxStop",
-	"ajaxComplete",
-	"ajaxError",
-	"ajaxSuccess",
-	"ajaxSend"
-], function( _i, type ) {
-	jQuery.fn[ type ] = function( fn ) {
-		return this.on( type, fn );
-	};
-} );
-
-
-
-
-jQuery.fn.extend( {
-
-	bind: function( types, data, fn ) {
-		return this.on( types, null, data, fn );
-	},
-	unbind: function( types, fn ) {
-		return this.off( types, null, fn );
-	},
-
-	delegate: function( selector, types, data, fn ) {
-		return this.on( types, selector, data, fn );
-	},
-	undelegate: function( selector, types, fn ) {
-
-		// ( namespace ) or ( selector, types [, fn] )
-		return arguments.length === 1 ?
-			this.off( selector, "**" ) :
-			this.off( types, selector || "**", fn );
-	},
-
-	hover: function( fnOver, fnOut ) {
-		return this.mouseenter( fnOver ).mouseleave( fnOut || fnOver );
-	}
-} );
-
-jQuery.each(
-	( "blur focus focusin focusout resize scroll click dblclick " +
-	"mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " +
-	"change select submit keydown keypress keyup contextmenu" ).split( " " ),
-	function( _i, name ) {
-
-		// Handle event binding
-		jQuery.fn[ name ] = function( data, fn ) {
-			return arguments.length > 0 ?
-				this.on( name, null, data, fn ) :
-				this.trigger( name );
-		};
-	}
-);
-
-
-
-
-// Support: Android <=4.0 only
-// Make sure we trim BOM and NBSP
-var rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g;
-
-// Bind a function to a context, optionally partially applying any
-// arguments.
-// jQuery.proxy is deprecated to promote standards (specifically Function#bind)
-// However, it is not slated for removal any time soon
-jQuery.proxy = function( fn, context ) {
-	var tmp, args, proxy;
-
-	if ( typeof context === "string" ) {
-		tmp = fn[ context ];
-		context = fn;
-		fn = tmp;
-	}
-
-	// Quick check to determine if target is callable, in the spec
-	// this throws a TypeError, but we will just return undefined.
-	if ( !isFunction( fn ) ) {
-		return undefined;
-	}
-
-	// Simulated bind
-	args = slice.call( arguments, 2 );
-	proxy = function() {
-		return fn.apply( context || this, args.concat( slice.call( arguments ) ) );
-	};
-
-	// Set the guid of unique handler to the same of original handler, so it can be removed
-	proxy.guid = fn.guid = fn.guid || jQuery.guid++;
-
-	return proxy;
-};
-
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diff --git a/v0.4.0/_static/jquery.js b/v0.4.0/_static/jquery.js
deleted file mode 100644
index c4c6022f2..000000000
--- a/v0.4.0/_static/jquery.js
+++ /dev/null
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diff --git a/v0.4.0/_static/language_data.js b/v0.4.0/_static/language_data.js
deleted file mode 100644
index 2e22b06ab..000000000
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-/*
- * language_data.js
- * ~~~~~~~~~~~~~~~~
- *
- * This script contains the language-specific data used by searchtools.js,
- * namely the list of stopwords, stemmer, scorer and splitter.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-
-var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
-
-
-/* Non-minified version is copied as a separate JS file, is available */
-
-/**
- * Porter Stemmer
- */
-var Stemmer = function() {
-
-  var step2list = {
-    ational: 'ate',
-    tional: 'tion',
-    enci: 'ence',
-    anci: 'ance',
-    izer: 'ize',
-    bli: 'ble',
-    alli: 'al',
-    entli: 'ent',
-    eli: 'e',
-    ousli: 'ous',
-    ization: 'ize',
-    ation: 'ate',
-    ator: 'ate',
-    alism: 'al',
-    iveness: 'ive',
-    fulness: 'ful',
-    ousness: 'ous',
-    aliti: 'al',
-    iviti: 'ive',
-    biliti: 'ble',
-    logi: 'log'
-  };
-
-  var step3list = {
-    icate: 'ic',
-    ative: '',
-    alize: 'al',
-    iciti: 'ic',
-    ical: 'ic',
-    ful: '',
-    ness: ''
-  };
-
-  var c = "[^aeiou]";          // consonant
-  var v = "[aeiouy]";          // vowel
-  var C = c + "[^aeiouy]*";    // consonant sequence
-  var V = v + "[aeiou]*";      // vowel sequence
-
-  var mgr0 = "^(" + C + ")?" + V + C;                      // [C]VC... is m>0
-  var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$";    // [C]VC[V] is m=1
-  var mgr1 = "^(" + C + ")?" + V + C + V + C;              // [C]VCVC... is m>1
-  var s_v   = "^(" + C + ")?" + v;                         // vowel in stem
-
-  this.stemWord = function (w) {
-    var stem;
-    var suffix;
-    var firstch;
-    var origword = w;
-
-    if (w.length < 3)
-      return w;
-
-    var re;
-    var re2;
-    var re3;
-    var re4;
-
-    firstch = w.substr(0,1);
-    if (firstch == "y")
-      w = firstch.toUpperCase() + w.substr(1);
-
-    // Step 1a
-    re = /^(.+?)(ss|i)es$/;
-    re2 = /^(.+?)([^s])s$/;
-
-    if (re.test(w))
-      w = w.replace(re,"$1$2");
-    else if (re2.test(w))
-      w = w.replace(re2,"$1$2");
-
-    // Step 1b
-    re = /^(.+?)eed$/;
-    re2 = /^(.+?)(ed|ing)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      re = new RegExp(mgr0);
-      if (re.test(fp[1])) {
-        re = /.$/;
-        w = w.replace(re,"");
-      }
-    }
-    else if (re2.test(w)) {
-      var fp = re2.exec(w);
-      stem = fp[1];
-      re2 = new RegExp(s_v);
-      if (re2.test(stem)) {
-        w = stem;
-        re2 = /(at|bl|iz)$/;
-        re3 = new RegExp("([^aeiouylsz])\\1$");
-        re4 = new RegExp("^" + C + v + "[^aeiouwxy]$");
-        if (re2.test(w))
-          w = w + "e";
-        else if (re3.test(w)) {
-          re = /.$/;
-          w = w.replace(re,"");
-        }
-        else if (re4.test(w))
-          w = w + "e";
-      }
-    }
-
-    // Step 1c
-    re = /^(.+?)y$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(s_v);
-      if (re.test(stem))
-        w = stem + "i";
-    }
-
-    // Step 2
-    re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      suffix = fp[2];
-      re = new RegExp(mgr0);
-      if (re.test(stem))
-        w = stem + step2list[suffix];
-    }
-
-    // Step 3
-    re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      suffix = fp[2];
-      re = new RegExp(mgr0);
-      if (re.test(stem))
-        w = stem + step3list[suffix];
-    }
-
-    // Step 4
-    re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/;
-    re2 = /^(.+?)(s|t)(ion)$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(mgr1);
-      if (re.test(stem))
-        w = stem;
-    }
-    else if (re2.test(w)) {
-      var fp = re2.exec(w);
-      stem = fp[1] + fp[2];
-      re2 = new RegExp(mgr1);
-      if (re2.test(stem))
-        w = stem;
-    }
-
-    // Step 5
-    re = /^(.+?)e$/;
-    if (re.test(w)) {
-      var fp = re.exec(w);
-      stem = fp[1];
-      re = new RegExp(mgr1);
-      re2 = new RegExp(meq1);
-      re3 = new RegExp("^" + C + v + "[^aeiouwxy]$");
-      if (re.test(stem) || (re2.test(stem) && !(re3.test(stem))))
-        w = stem;
-    }
-    re = /ll$/;
-    re2 = new RegExp(mgr1);
-    if (re.test(w) && re2.test(w)) {
-      re = /.$/;
-      w = w.replace(re,"");
-    }
-
-    // and turn initial Y back to y
-    if (firstch == "y")
-      w = firstch.toLowerCase() + w.substr(1);
-    return w;
-  }
-}
-
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index 691aeb82d..000000000
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diff --git a/v0.4.0/_static/searchtools.js b/v0.4.0/_static/searchtools.js
deleted file mode 100644
index e89e34d4e..000000000
--- a/v0.4.0/_static/searchtools.js
+++ /dev/null
@@ -1,566 +0,0 @@
-/*
- * searchtools.js
- * ~~~~~~~~~~~~~~~~
- *
- * Sphinx JavaScript utilities for the full-text search.
- *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
- */
-"use strict";
-
-/**
- * Simple result scoring code.
- */
-if (typeof Scorer === "undefined") {
-  var Scorer = {
-    // Implement the following function to further tweak the score for each result
-    // The function takes a result array [docname, title, anchor, descr, score, filename]
-    // and returns the new score.
-    /*
-    score: result => {
-      const [docname, title, anchor, descr, score, filename] = result
-      return score
-    },
-    */
-
-    // query matches the full name of an object
-    objNameMatch: 11,
-    // or matches in the last dotted part of the object name
-    objPartialMatch: 6,
-    // Additive scores depending on the priority of the object
-    objPrio: {
-      0: 15, // used to be importantResults
-      1: 5, // used to be objectResults
-      2: -5, // used to be unimportantResults
-    },
-    //  Used when the priority is not in the mapping.
-    objPrioDefault: 0,
-
-    // query found in title
-    title: 15,
-    partialTitle: 7,
-    // query found in terms
-    term: 5,
-    partialTerm: 2,
-  };
-}
-
-const _removeChildren = (element) => {
-  while (element && element.lastChild) element.removeChild(element.lastChild);
-};
-
-/**
- * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping
- */
-const _escapeRegExp = (string) =>
-  string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string
-
-const _displayItem = (item, searchTerms) => {
-  const docBuilder = DOCUMENTATION_OPTIONS.BUILDER;
-  const docUrlRoot = DOCUMENTATION_OPTIONS.URL_ROOT;
-  const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX;
-  const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX;
-  const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
-
-  const [docName, title, anchor, descr, score, _filename] = item;
-
-  let listItem = document.createElement("li");
-  let requestUrl;
-  let linkUrl;
-  if (docBuilder === "dirhtml") {
-    // dirhtml builder
-    let dirname = docName + "/";
-    if (dirname.match(/\/index\/$/))
-      dirname = dirname.substring(0, dirname.length - 6);
-    else if (dirname === "index/") dirname = "";
-    requestUrl = docUrlRoot + dirname;
-    linkUrl = requestUrl;
-  } else {
-    // normal html builders
-    requestUrl = docUrlRoot + docName + docFileSuffix;
-    linkUrl = docName + docLinkSuffix;
-  }
-  let linkEl = listItem.appendChild(document.createElement("a"));
-  linkEl.href = linkUrl + anchor;
-  linkEl.dataset.score = score;
-  linkEl.innerHTML = title;
-  if (descr)
-    listItem.appendChild(document.createElement("span")).innerHTML =
-      " (" + descr + ")";
-  else if (showSearchSummary)
-    fetch(requestUrl)
-      .then((responseData) => responseData.text())
-      .then((data) => {
-        if (data)
-          listItem.appendChild(
-            Search.makeSearchSummary(data, searchTerms)
-          );
-      });
-  Search.output.appendChild(listItem);
-};
-const _finishSearch = (resultCount) => {
-  Search.stopPulse();
-  Search.title.innerText = _("Search Results");
-  if (!resultCount)
-    Search.status.innerText = Documentation.gettext(
-      "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
-    );
-  else
-    Search.status.innerText = _(
-      `Search finished, found ${resultCount} page(s) matching the search query.`
-    );
-};
-const _displayNextItem = (
-  results,
-  resultCount,
-  searchTerms
-) => {
-  // results left, load the summary and display it
-  // this is intended to be dynamic (don't sub resultsCount)
-  if (results.length) {
-    _displayItem(results.pop(), searchTerms);
-    setTimeout(
-      () => _displayNextItem(results, resultCount, searchTerms),
-      5
-    );
-  }
-  // search finished, update title and status message
-  else _finishSearch(resultCount);
-};
-
-/**
- * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
- * custom function per language.
- *
- * The regular expression works by splitting the string on consecutive characters
- * that are not Unicode letters, numbers, underscores, or emoji characters.
- * This is the same as ``\W+`` in Python, preserving the surrogate pair area.
- */
-if (typeof splitQuery === "undefined") {
-  var splitQuery = (query) => query
-      .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu)
-      .filter(term => term)  // remove remaining empty strings
-}
-
-/**
- * Search Module
- */
-const Search = {
-  _index: null,
-  _queued_query: null,
-  _pulse_status: -1,
-
-  htmlToText: (htmlString) => {
-    const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
-    htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() });
-    const docContent = htmlElement.querySelector('[role="main"]');
-    if (docContent !== undefined) return docContent.textContent;
-    console.warn(
-      "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template."
-    );
-    return "";
-  },
-
-  init: () => {
-    const query = new URLSearchParams(window.location.search).get("q");
-    document
-      .querySelectorAll('input[name="q"]')
-      .forEach((el) => (el.value = query));
-    if (query) Search.performSearch(query);
-  },
-
-  loadIndex: (url) =>
-    (document.body.appendChild(document.createElement("script")).src = url),
-
-  setIndex: (index) => {
-    Search._index = index;
-    if (Search._queued_query !== null) {
-      const query = Search._queued_query;
-      Search._queued_query = null;
-      Search.query(query);
-    }
-  },
-
-  hasIndex: () => Search._index !== null,
-
-  deferQuery: (query) => (Search._queued_query = query),
-
-  stopPulse: () => (Search._pulse_status = -1),
-
-  startPulse: () => {
-    if (Search._pulse_status >= 0) return;
-
-    const pulse = () => {
-      Search._pulse_status = (Search._pulse_status + 1) % 4;
-      Search.dots.innerText = ".".repeat(Search._pulse_status);
-      if (Search._pulse_status >= 0) window.setTimeout(pulse, 500);
-    };
-    pulse();
-  },
-
-  /**
-   * perform a search for something (or wait until index is loaded)
-   */
-  performSearch: (query) => {
-    // create the required interface elements
-    const searchText = document.createElement("h2");
-    searchText.textContent = _("Searching");
-    const searchSummary = document.createElement("p");
-    searchSummary.classList.add("search-summary");
-    searchSummary.innerText = "";
-    const searchList = document.createElement("ul");
-    searchList.classList.add("search");
-
-    const out = document.getElementById("search-results");
-    Search.title = out.appendChild(searchText);
-    Search.dots = Search.title.appendChild(document.createElement("span"));
-    Search.status = out.appendChild(searchSummary);
-    Search.output = out.appendChild(searchList);
-
-    const searchProgress = document.getElementById("search-progress");
-    // Some themes don't use the search progress node
-    if (searchProgress) {
-      searchProgress.innerText = _("Preparing search...");
-    }
-    Search.startPulse();
-
-    // index already loaded, the browser was quick!
-    if (Search.hasIndex()) Search.query(query);
-    else Search.deferQuery(query);
-  },
-
-  /**
-   * execute search (requires search index to be loaded)
-   */
-  query: (query) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-    const allTitles = Search._index.alltitles;
-    const indexEntries = Search._index.indexentries;
-
-    // stem the search terms and add them to the correct list
-    const stemmer = new Stemmer();
-    const searchTerms = new Set();
-    const excludedTerms = new Set();
-    const highlightTerms = new Set();
-    const objectTerms = new Set(splitQuery(query.toLowerCase().trim()));
-    splitQuery(query.trim()).forEach((queryTerm) => {
-      const queryTermLower = queryTerm.toLowerCase();
-
-      // maybe skip this "word"
-      // stopwords array is from language_data.js
-      if (
-        stopwords.indexOf(queryTermLower) !== -1 ||
-        queryTerm.match(/^\d+$/)
-      )
-        return;
-
-      // stem the word
-      let word = stemmer.stemWord(queryTermLower);
-      // select the correct list
-      if (word[0] === "-") excludedTerms.add(word.substr(1));
-      else {
-        searchTerms.add(word);
-        highlightTerms.add(queryTermLower);
-      }
-    });
-
-    if (SPHINX_HIGHLIGHT_ENABLED) {  // set in sphinx_highlight.js
-      localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" "))
-    }
-
-    // console.debug("SEARCH: searching for:");
-    // console.info("required: ", [...searchTerms]);
-    // console.info("excluded: ", [...excludedTerms]);
-
-    // array of [docname, title, anchor, descr, score, filename]
-    let results = [];
-    _removeChildren(document.getElementById("search-progress"));
-
-    const queryLower = query.toLowerCase();
-    for (const [title, foundTitles] of Object.entries(allTitles)) {
-      if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) {
-        for (const [file, id] of foundTitles) {
-          let score = Math.round(100 * queryLower.length / title.length)
-          results.push([
-            docNames[file],
-            titles[file] !== title ? `${titles[file]} > ${title}` : title,
-            id !== null ? "#" + id : "",
-            null,
-            score,
-            filenames[file],
-          ]);
-        }
-      }
-    }
-
-    // search for explicit entries in index directives
-    for (const [entry, foundEntries] of Object.entries(indexEntries)) {
-      if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
-        for (const [file, id] of foundEntries) {
-          let score = Math.round(100 * queryLower.length / entry.length)
-          results.push([
-            docNames[file],
-            titles[file],
-            id ? "#" + id : "",
-            null,
-            score,
-            filenames[file],
-          ]);
-        }
-      }
-    }
-
-    // lookup as object
-    objectTerms.forEach((term) =>
-      results.push(...Search.performObjectSearch(term, objectTerms))
-    );
-
-    // lookup as search terms in fulltext
-    results.push(...Search.performTermsSearch(searchTerms, excludedTerms));
-
-    // let the scorer override scores with a custom scoring function
-    if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item)));
-
-    // now sort the results by score (in opposite order of appearance, since the
-    // display function below uses pop() to retrieve items) and then
-    // alphabetically
-    results.sort((a, b) => {
-      const leftScore = a[4];
-      const rightScore = b[4];
-      if (leftScore === rightScore) {
-        // same score: sort alphabetically
-        const leftTitle = a[1].toLowerCase();
-        const rightTitle = b[1].toLowerCase();
-        if (leftTitle === rightTitle) return 0;
-        return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
-      }
-      return leftScore > rightScore ? 1 : -1;
-    });
-
-    // remove duplicate search results
-    // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
-    let seen = new Set();
-    results = results.reverse().reduce((acc, result) => {
-      let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(',');
-      if (!seen.has(resultStr)) {
-        acc.push(result);
-        seen.add(resultStr);
-      }
-      return acc;
-    }, []);
-
-    results = results.reverse();
-
-    // for debugging
-    //Search.lastresults = results.slice();  // a copy
-    // console.info("search results:", Search.lastresults);
-
-    // print the results
-    _displayNextItem(results, results.length, searchTerms);
-  },
-
-  /**
-   * search for object names
-   */
-  performObjectSearch: (object, objectTerms) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const objects = Search._index.objects;
-    const objNames = Search._index.objnames;
-    const titles = Search._index.titles;
-
-    const results = [];
-
-    const objectSearchCallback = (prefix, match) => {
-      const name = match[4]
-      const fullname = (prefix ? prefix + "." : "") + name;
-      const fullnameLower = fullname.toLowerCase();
-      if (fullnameLower.indexOf(object) < 0) return;
-
-      let score = 0;
-      const parts = fullnameLower.split(".");
-
-      // check for different match types: exact matches of full name or
-      // "last name" (i.e. last dotted part)
-      if (fullnameLower === object || parts.slice(-1)[0] === object)
-        score += Scorer.objNameMatch;
-      else if (parts.slice(-1)[0].indexOf(object) > -1)
-        score += Scorer.objPartialMatch; // matches in last name
-
-      const objName = objNames[match[1]][2];
-      const title = titles[match[0]];
-
-      // If more than one term searched for, we require other words to be
-      // found in the name/title/description
-      const otherTerms = new Set(objectTerms);
-      otherTerms.delete(object);
-      if (otherTerms.size > 0) {
-        const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase();
-        if (
-          [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0)
-        )
-          return;
-      }
-
-      let anchor = match[3];
-      if (anchor === "") anchor = fullname;
-      else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname;
-
-      const descr = objName + _(", in ") + title;
-
-      // add custom score for some objects according to scorer
-      if (Scorer.objPrio.hasOwnProperty(match[2]))
-        score += Scorer.objPrio[match[2]];
-      else score += Scorer.objPrioDefault;
-
-      results.push([
-        docNames[match[0]],
-        fullname,
-        "#" + anchor,
-        descr,
-        score,
-        filenames[match[0]],
-      ]);
-    };
-    Object.keys(objects).forEach((prefix) =>
-      objects[prefix].forEach((array) =>
-        objectSearchCallback(prefix, array)
-      )
-    );
-    return results;
-  },
-
-  /**
-   * search for full-text terms in the index
-   */
-  performTermsSearch: (searchTerms, excludedTerms) => {
-    // prepare search
-    const terms = Search._index.terms;
-    const titleTerms = Search._index.titleterms;
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-
-    const scoreMap = new Map();
-    const fileMap = new Map();
-
-    // perform the search on the required terms
-    searchTerms.forEach((word) => {
-      const files = [];
-      const arr = [
-        { files: terms[word], score: Scorer.term },
-        { files: titleTerms[word], score: Scorer.title },
-      ];
-      // add support for partial matches
-      if (word.length > 2) {
-        const escapedWord = _escapeRegExp(word);
-        Object.keys(terms).forEach((term) => {
-          if (term.match(escapedWord) && !terms[word])
-            arr.push({ files: terms[term], score: Scorer.partialTerm });
-        });
-        Object.keys(titleTerms).forEach((term) => {
-          if (term.match(escapedWord) && !titleTerms[word])
-            arr.push({ files: titleTerms[word], score: Scorer.partialTitle });
-        });
-      }
-
-      // no match but word was a required one
-      if (arr.every((record) => record.files === undefined)) return;
-
-      // found search word in contents
-      arr.forEach((record) => {
-        if (record.files === undefined) return;
-
-        let recordFiles = record.files;
-        if (recordFiles.length === undefined) recordFiles = [recordFiles];
-        files.push(...recordFiles);
-
-        // set score for the word in each file
-        recordFiles.forEach((file) => {
-          if (!scoreMap.has(file)) scoreMap.set(file, {});
-          scoreMap.get(file)[word] = record.score;
-        });
-      });
-
-      // create the mapping
-      files.forEach((file) => {
-        if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1)
-          fileMap.get(file).push(word);
-        else fileMap.set(file, [word]);
-      });
-    });
-
-    // now check if the files don't contain excluded terms
-    const results = [];
-    for (const [file, wordList] of fileMap) {
-      // check if all requirements are matched
-
-      // as search terms with length < 3 are discarded
-      const filteredTermCount = [...searchTerms].filter(
-        (term) => term.length > 2
-      ).length;
-      if (
-        wordList.length !== searchTerms.size &&
-        wordList.length !== filteredTermCount
-      )
-        continue;
-
-      // ensure that none of the excluded terms is in the search result
-      if (
-        [...excludedTerms].some(
-          (term) =>
-            terms[term] === file ||
-            titleTerms[term] === file ||
-            (terms[term] || []).includes(file) ||
-            (titleTerms[term] || []).includes(file)
-        )
-      )
-        break;
-
-      // select one (max) score for the file.
-      const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w]));
-      // add result to the result list
-      results.push([
-        docNames[file],
-        titles[file],
-        "",
-        null,
-        score,
-        filenames[file],
-      ]);
-    }
-    return results;
-  },
-
-  /**
-   * helper function to return a node containing the
-   * search summary for a given text. keywords is a list
-   * of stemmed words.
-   */
-  makeSearchSummary: (htmlText, keywords) => {
-    const text = Search.htmlToText(htmlText);
-    if (text === "") return null;
-
-    const textLower = text.toLowerCase();
-    const actualStartPosition = [...keywords]
-      .map((k) => textLower.indexOf(k.toLowerCase()))
-      .filter((i) => i > -1)
-      .slice(-1)[0];
-    const startWithContext = Math.max(actualStartPosition - 120, 0);
-
-    const top = startWithContext === 0 ? "" : "...";
-    const tail = startWithContext + 240 < text.length ? "..." : "";
-
-    let summary = document.createElement("p");
-    summary.classList.add("context");
-    summary.textContent = top + text.substr(startWithContext, 240).trim() + tail;
-
-    return summary;
-  },
-};
-
-_ready(Search.init);
diff --git a/v0.4.0/_static/sphinx_highlight.js b/v0.4.0/_static/sphinx_highlight.js
deleted file mode 100644
index aae669d7e..000000000
--- a/v0.4.0/_static/sphinx_highlight.js
+++ /dev/null
@@ -1,144 +0,0 @@
-/* Highlighting utilities for Sphinx HTML documentation. */
-"use strict";
-
-const SPHINX_HIGHLIGHT_ENABLED = true
-
-/**
- * highlight a given string on a node by wrapping it in
- * span elements with the given class name.
- */
-const _highlight = (node, addItems, text, className) => {
-  if (node.nodeType === Node.TEXT_NODE) {
-    const val = node.nodeValue;
-    const parent = node.parentNode;
-    const pos = val.toLowerCase().indexOf(text);
-    if (
-      pos >= 0 &&
-      !parent.classList.contains(className) &&
-      !parent.classList.contains("nohighlight")
-    ) {
-      let span;
-
-      const closestNode = parent.closest("body, svg, foreignObject");
-      const isInSVG = closestNode && closestNode.matches("svg");
-      if (isInSVG) {
-        span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
-      } else {
-        span = document.createElement("span");
-        span.classList.add(className);
-      }
-
-      span.appendChild(document.createTextNode(val.substr(pos, text.length)));
-      parent.insertBefore(
-        span,
-        parent.insertBefore(
-          document.createTextNode(val.substr(pos + text.length)),
-          node.nextSibling
-        )
-      );
-      node.nodeValue = val.substr(0, pos);
-
-      if (isInSVG) {
-        const rect = document.createElementNS(
-          "http://www.w3.org/2000/svg",
-          "rect"
-        );
-        const bbox = parent.getBBox();
-        rect.x.baseVal.value = bbox.x;
-        rect.y.baseVal.value = bbox.y;
-        rect.width.baseVal.value = bbox.width;
-        rect.height.baseVal.value = bbox.height;
-        rect.setAttribute("class", className);
-        addItems.push({ parent: parent, target: rect });
-      }
-    }
-  } else if (node.matches && !node.matches("button, select, textarea")) {
-    node.childNodes.forEach((el) => _highlight(el, addItems, text, className));
-  }
-};
-const _highlightText = (thisNode, text, className) => {
-  let addItems = [];
-  _highlight(thisNode, addItems, text, className);
-  addItems.forEach((obj) =>
-    obj.parent.insertAdjacentElement("beforebegin", obj.target)
-  );
-};
-
-/**
- * Small JavaScript module for the documentation.
- */
-const SphinxHighlight = {
-
-  /**
-   * highlight the search words provided in localstorage in the text
-   */
-  highlightSearchWords: () => {
-    if (!SPHINX_HIGHLIGHT_ENABLED) return;  // bail if no highlight
-
-    // get and clear terms from localstorage
-    const url = new URL(window.location);
-    const highlight =
-        localStorage.getItem("sphinx_highlight_terms")
-        || url.searchParams.get("highlight")
-        || "";
-    localStorage.removeItem("sphinx_highlight_terms")
-    url.searchParams.delete("highlight");
-    window.history.replaceState({}, "", url);
-
-    // get individual terms from highlight string
-    const terms = highlight.toLowerCase().split(/\s+/).filter(x => x);
-    if (terms.length === 0) return; // nothing to do
-
-    // There should never be more than one element matching "div.body"
-    const divBody = document.querySelectorAll("div.body");
-    const body = divBody.length ? divBody[0] : document.querySelector("body");
-    window.setTimeout(() => {
-      terms.forEach((term) => _highlightText(body, term, "highlighted"));
-    }, 10);
-
-    const searchBox = document.getElementById("searchbox");
-    if (searchBox === null) return;
-    searchBox.appendChild(
-      document
-        .createRange()
-        .createContextualFragment(
-          '<p class="highlight-link">' +
-            '<a href="javascript:SphinxHighlight.hideSearchWords()">' +
-            _("Hide Search Matches") +
-            "</a></p>"
-        )
-    );
-  },
-
-  /**
-   * helper function to hide the search marks again
-   */
-  hideSearchWords: () => {
-    document
-      .querySelectorAll("#searchbox .highlight-link")
-      .forEach((el) => el.remove());
-    document
-      .querySelectorAll("span.highlighted")
-      .forEach((el) => el.classList.remove("highlighted"));
-    localStorage.removeItem("sphinx_highlight_terms")
-  },
-
-  initEscapeListener: () => {
-    // only install a listener if it is really needed
-    if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return;
-
-    document.addEventListener("keydown", (event) => {
-      // bail for input elements
-      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
-      // bail with special keys
-      if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return;
-      if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) {
-        SphinxHighlight.hideSearchWords();
-        event.preventDefault();
-      }
-    });
-  },
-};
-
-_ready(SphinxHighlight.highlightSearchWords);
-_ready(SphinxHighlight.initEscapeListener);
diff --git a/v0.4.0/_static/underscore-1.13.1.js b/v0.4.0/_static/underscore-1.13.1.js
deleted file mode 100644
index ffd77af96..000000000
--- a/v0.4.0/_static/underscore-1.13.1.js
+++ /dev/null
@@ -1,2042 +0,0 @@
-(function (global, factory) {
-  typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() :
-  typeof define === 'function' && define.amd ? define('underscore', factory) :
-  (global = typeof globalThis !== 'undefined' ? globalThis : global || self, (function () {
-    var current = global._;
-    var exports = global._ = factory();
-    exports.noConflict = function () { global._ = current; return exports; };
-  }()));
-}(this, (function () {
-  //     Underscore.js 1.13.1
-  //     https://underscorejs.org
-  //     (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors
-  //     Underscore may be freely distributed under the MIT license.
-
-  // Current version.
-  var VERSION = '1.13.1';
-
-  // Establish the root object, `window` (`self`) in the browser, `global`
-  // on the server, or `this` in some virtual machines. We use `self`
-  // instead of `window` for `WebWorker` support.
-  var root = typeof self == 'object' && self.self === self && self ||
-            typeof global == 'object' && global.global === global && global ||
-            Function('return this')() ||
-            {};
-
-  // Save bytes in the minified (but not gzipped) version:
-  var ArrayProto = Array.prototype, ObjProto = Object.prototype;
-  var SymbolProto = typeof Symbol !== 'undefined' ? Symbol.prototype : null;
-
-  // Create quick reference variables for speed access to core prototypes.
-  var push = ArrayProto.push,
-      slice = ArrayProto.slice,
-      toString = ObjProto.toString,
-      hasOwnProperty = ObjProto.hasOwnProperty;
-
-  // Modern feature detection.
-  var supportsArrayBuffer = typeof ArrayBuffer !== 'undefined',
-      supportsDataView = typeof DataView !== 'undefined';
-
-  // All **ECMAScript 5+** native function implementations that we hope to use
-  // are declared here.
-  var nativeIsArray = Array.isArray,
-      nativeKeys = Object.keys,
-      nativeCreate = Object.create,
-      nativeIsView = supportsArrayBuffer && ArrayBuffer.isView;
-
-  // Create references to these builtin functions because we override them.
-  var _isNaN = isNaN,
-      _isFinite = isFinite;
-
-  // Keys in IE < 9 that won't be iterated by `for key in ...` and thus missed.
-  var hasEnumBug = !{toString: null}.propertyIsEnumerable('toString');
-  var nonEnumerableProps = ['valueOf', 'isPrototypeOf', 'toString',
-    'propertyIsEnumerable', 'hasOwnProperty', 'toLocaleString'];
-
-  // The largest integer that can be represented exactly.
-  var MAX_ARRAY_INDEX = Math.pow(2, 53) - 1;
-
-  // Some functions take a variable number of arguments, or a few expected
-  // arguments at the beginning and then a variable number of values to operate
-  // on. This helper accumulates all remaining arguments past the function’s
-  // argument length (or an explicit `startIndex`), into an array that becomes
-  // the last argument. Similar to ES6’s "rest parameter".
-  function restArguments(func, startIndex) {
-    startIndex = startIndex == null ? func.length - 1 : +startIndex;
-    return function() {
-      var length = Math.max(arguments.length - startIndex, 0),
-          rest = Array(length),
-          index = 0;
-      for (; index < length; index++) {
-        rest[index] = arguments[index + startIndex];
-      }
-      switch (startIndex) {
-        case 0: return func.call(this, rest);
-        case 1: return func.call(this, arguments[0], rest);
-        case 2: return func.call(this, arguments[0], arguments[1], rest);
-      }
-      var args = Array(startIndex + 1);
-      for (index = 0; index < startIndex; index++) {
-        args[index] = arguments[index];
-      }
-      args[startIndex] = rest;
-      return func.apply(this, args);
-    };
-  }
-
-  // Is a given variable an object?
-  function isObject(obj) {
-    var type = typeof obj;
-    return type === 'function' || type === 'object' && !!obj;
-  }
-
-  // Is a given value equal to null?
-  function isNull(obj) {
-    return obj === null;
-  }
-
-  // Is a given variable undefined?
-  function isUndefined(obj) {
-    return obj === void 0;
-  }
-
-  // Is a given value a boolean?
-  function isBoolean(obj) {
-    return obj === true || obj === false || toString.call(obj) === '[object Boolean]';
-  }
-
-  // Is a given value a DOM element?
-  function isElement(obj) {
-    return !!(obj && obj.nodeType === 1);
-  }
-
-  // Internal function for creating a `toString`-based type tester.
-  function tagTester(name) {
-    var tag = '[object ' + name + ']';
-    return function(obj) {
-      return toString.call(obj) === tag;
-    };
-  }
-
-  var isString = tagTester('String');
-
-  var isNumber = tagTester('Number');
-
-  var isDate = tagTester('Date');
-
-  var isRegExp = tagTester('RegExp');
-
-  var isError = tagTester('Error');
-
-  var isSymbol = tagTester('Symbol');
-
-  var isArrayBuffer = tagTester('ArrayBuffer');
-
-  var isFunction = tagTester('Function');
-
-  // Optimize `isFunction` if appropriate. Work around some `typeof` bugs in old
-  // v8, IE 11 (#1621), Safari 8 (#1929), and PhantomJS (#2236).
-  var nodelist = root.document && root.document.childNodes;
-  if (typeof /./ != 'function' && typeof Int8Array != 'object' && typeof nodelist != 'function') {
-    isFunction = function(obj) {
-      return typeof obj == 'function' || false;
-    };
-  }
-
-  var isFunction$1 = isFunction;
-
-  var hasObjectTag = tagTester('Object');
-
-  // In IE 10 - Edge 13, `DataView` has string tag `'[object Object]'`.
-  // In IE 11, the most common among them, this problem also applies to
-  // `Map`, `WeakMap` and `Set`.
-  var hasStringTagBug = (
-        supportsDataView && hasObjectTag(new DataView(new ArrayBuffer(8)))
-      ),
-      isIE11 = (typeof Map !== 'undefined' && hasObjectTag(new Map));
-
-  var isDataView = tagTester('DataView');
-
-  // In IE 10 - Edge 13, we need a different heuristic
-  // to determine whether an object is a `DataView`.
-  function ie10IsDataView(obj) {
-    return obj != null && isFunction$1(obj.getInt8) && isArrayBuffer(obj.buffer);
-  }
-
-  var isDataView$1 = (hasStringTagBug ? ie10IsDataView : isDataView);
-
-  // Is a given value an array?
-  // Delegates to ECMA5's native `Array.isArray`.
-  var isArray = nativeIsArray || tagTester('Array');
-
-  // Internal function to check whether `key` is an own property name of `obj`.
-  function has$1(obj, key) {
-    return obj != null && hasOwnProperty.call(obj, key);
-  }
-
-  var isArguments = tagTester('Arguments');
-
-  // Define a fallback version of the method in browsers (ahem, IE < 9), where
-  // there isn't any inspectable "Arguments" type.
-  (function() {
-    if (!isArguments(arguments)) {
-      isArguments = function(obj) {
-        return has$1(obj, 'callee');
-      };
-    }
-  }());
-
-  var isArguments$1 = isArguments;
-
-  // Is a given object a finite number?
-  function isFinite$1(obj) {
-    return !isSymbol(obj) && _isFinite(obj) && !isNaN(parseFloat(obj));
-  }
-
-  // Is the given value `NaN`?
-  function isNaN$1(obj) {
-    return isNumber(obj) && _isNaN(obj);
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function constant(value) {
-    return function() {
-      return value;
-    };
-  }
-
-  // Common internal logic for `isArrayLike` and `isBufferLike`.
-  function createSizePropertyCheck(getSizeProperty) {
-    return function(collection) {
-      var sizeProperty = getSizeProperty(collection);
-      return typeof sizeProperty == 'number' && sizeProperty >= 0 && sizeProperty <= MAX_ARRAY_INDEX;
-    }
-  }
-
-  // Internal helper to generate a function to obtain property `key` from `obj`.
-  function shallowProperty(key) {
-    return function(obj) {
-      return obj == null ? void 0 : obj[key];
-    };
-  }
-
-  // Internal helper to obtain the `byteLength` property of an object.
-  var getByteLength = shallowProperty('byteLength');
-
-  // Internal helper to determine whether we should spend extensive checks against
-  // `ArrayBuffer` et al.
-  var isBufferLike = createSizePropertyCheck(getByteLength);
-
-  // Is a given value a typed array?
-  var typedArrayPattern = /\[object ((I|Ui)nt(8|16|32)|Float(32|64)|Uint8Clamped|Big(I|Ui)nt64)Array\]/;
-  function isTypedArray(obj) {
-    // `ArrayBuffer.isView` is the most future-proof, so use it when available.
-    // Otherwise, fall back on the above regular expression.
-    return nativeIsView ? (nativeIsView(obj) && !isDataView$1(obj)) :
-                  isBufferLike(obj) && typedArrayPattern.test(toString.call(obj));
-  }
-
-  var isTypedArray$1 = supportsArrayBuffer ? isTypedArray : constant(false);
-
-  // Internal helper to obtain the `length` property of an object.
-  var getLength = shallowProperty('length');
-
-  // Internal helper to create a simple lookup structure.
-  // `collectNonEnumProps` used to depend on `_.contains`, but this led to
-  // circular imports. `emulatedSet` is a one-off solution that only works for
-  // arrays of strings.
-  function emulatedSet(keys) {
-    var hash = {};
-    for (var l = keys.length, i = 0; i < l; ++i) hash[keys[i]] = true;
-    return {
-      contains: function(key) { return hash[key]; },
-      push: function(key) {
-        hash[key] = true;
-        return keys.push(key);
-      }
-    };
-  }
-
-  // Internal helper. Checks `keys` for the presence of keys in IE < 9 that won't
-  // be iterated by `for key in ...` and thus missed. Extends `keys` in place if
-  // needed.
-  function collectNonEnumProps(obj, keys) {
-    keys = emulatedSet(keys);
-    var nonEnumIdx = nonEnumerableProps.length;
-    var constructor = obj.constructor;
-    var proto = isFunction$1(constructor) && constructor.prototype || ObjProto;
-
-    // Constructor is a special case.
-    var prop = 'constructor';
-    if (has$1(obj, prop) && !keys.contains(prop)) keys.push(prop);
-
-    while (nonEnumIdx--) {
-      prop = nonEnumerableProps[nonEnumIdx];
-      if (prop in obj && obj[prop] !== proto[prop] && !keys.contains(prop)) {
-        keys.push(prop);
-      }
-    }
-  }
-
-  // Retrieve the names of an object's own properties.
-  // Delegates to **ECMAScript 5**'s native `Object.keys`.
-  function keys(obj) {
-    if (!isObject(obj)) return [];
-    if (nativeKeys) return nativeKeys(obj);
-    var keys = [];
-    for (var key in obj) if (has$1(obj, key)) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Is a given array, string, or object empty?
-  // An "empty" object has no enumerable own-properties.
-  function isEmpty(obj) {
-    if (obj == null) return true;
-    // Skip the more expensive `toString`-based type checks if `obj` has no
-    // `.length`.
-    var length = getLength(obj);
-    if (typeof length == 'number' && (
-      isArray(obj) || isString(obj) || isArguments$1(obj)
-    )) return length === 0;
-    return getLength(keys(obj)) === 0;
-  }
-
-  // Returns whether an object has a given set of `key:value` pairs.
-  function isMatch(object, attrs) {
-    var _keys = keys(attrs), length = _keys.length;
-    if (object == null) return !length;
-    var obj = Object(object);
-    for (var i = 0; i < length; i++) {
-      var key = _keys[i];
-      if (attrs[key] !== obj[key] || !(key in obj)) return false;
-    }
-    return true;
-  }
-
-  // If Underscore is called as a function, it returns a wrapped object that can
-  // be used OO-style. This wrapper holds altered versions of all functions added
-  // through `_.mixin`. Wrapped objects may be chained.
-  function _$1(obj) {
-    if (obj instanceof _$1) return obj;
-    if (!(this instanceof _$1)) return new _$1(obj);
-    this._wrapped = obj;
-  }
-
-  _$1.VERSION = VERSION;
-
-  // Extracts the result from a wrapped and chained object.
-  _$1.prototype.value = function() {
-    return this._wrapped;
-  };
-
-  // Provide unwrapping proxies for some methods used in engine operations
-  // such as arithmetic and JSON stringification.
-  _$1.prototype.valueOf = _$1.prototype.toJSON = _$1.prototype.value;
-
-  _$1.prototype.toString = function() {
-    return String(this._wrapped);
-  };
-
-  // Internal function to wrap or shallow-copy an ArrayBuffer,
-  // typed array or DataView to a new view, reusing the buffer.
-  function toBufferView(bufferSource) {
-    return new Uint8Array(
-      bufferSource.buffer || bufferSource,
-      bufferSource.byteOffset || 0,
-      getByteLength(bufferSource)
-    );
-  }
-
-  // We use this string twice, so give it a name for minification.
-  var tagDataView = '[object DataView]';
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function eq(a, b, aStack, bStack) {
-    // Identical objects are equal. `0 === -0`, but they aren't identical.
-    // See the [Harmony `egal` proposal](https://wiki.ecmascript.org/doku.php?id=harmony:egal).
-    if (a === b) return a !== 0 || 1 / a === 1 / b;
-    // `null` or `undefined` only equal to itself (strict comparison).
-    if (a == null || b == null) return false;
-    // `NaN`s are equivalent, but non-reflexive.
-    if (a !== a) return b !== b;
-    // Exhaust primitive checks
-    var type = typeof a;
-    if (type !== 'function' && type !== 'object' && typeof b != 'object') return false;
-    return deepEq(a, b, aStack, bStack);
-  }
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function deepEq(a, b, aStack, bStack) {
-    // Unwrap any wrapped objects.
-    if (a instanceof _$1) a = a._wrapped;
-    if (b instanceof _$1) b = b._wrapped;
-    // Compare `[[Class]]` names.
-    var className = toString.call(a);
-    if (className !== toString.call(b)) return false;
-    // Work around a bug in IE 10 - Edge 13.
-    if (hasStringTagBug && className == '[object Object]' && isDataView$1(a)) {
-      if (!isDataView$1(b)) return false;
-      className = tagDataView;
-    }
-    switch (className) {
-      // These types are compared by value.
-      case '[object RegExp]':
-        // RegExps are coerced to strings for comparison (Note: '' + /a/i === '/a/i')
-      case '[object String]':
-        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
-        // equivalent to `new String("5")`.
-        return '' + a === '' + b;
-      case '[object Number]':
-        // `NaN`s are equivalent, but non-reflexive.
-        // Object(NaN) is equivalent to NaN.
-        if (+a !== +a) return +b !== +b;
-        // An `egal` comparison is performed for other numeric values.
-        return +a === 0 ? 1 / +a === 1 / b : +a === +b;
-      case '[object Date]':
-      case '[object Boolean]':
-        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
-        // millisecond representations. Note that invalid dates with millisecond representations
-        // of `NaN` are not equivalent.
-        return +a === +b;
-      case '[object Symbol]':
-        return SymbolProto.valueOf.call(a) === SymbolProto.valueOf.call(b);
-      case '[object ArrayBuffer]':
-      case tagDataView:
-        // Coerce to typed array so we can fall through.
-        return deepEq(toBufferView(a), toBufferView(b), aStack, bStack);
-    }
-
-    var areArrays = className === '[object Array]';
-    if (!areArrays && isTypedArray$1(a)) {
-        var byteLength = getByteLength(a);
-        if (byteLength !== getByteLength(b)) return false;
-        if (a.buffer === b.buffer && a.byteOffset === b.byteOffset) return true;
-        areArrays = true;
-    }
-    if (!areArrays) {
-      if (typeof a != 'object' || typeof b != 'object') return false;
-
-      // Objects with different constructors are not equivalent, but `Object`s or `Array`s
-      // from different frames are.
-      var aCtor = a.constructor, bCtor = b.constructor;
-      if (aCtor !== bCtor && !(isFunction$1(aCtor) && aCtor instanceof aCtor &&
-                               isFunction$1(bCtor) && bCtor instanceof bCtor)
-                          && ('constructor' in a && 'constructor' in b)) {
-        return false;
-      }
-    }
-    // Assume equality for cyclic structures. The algorithm for detecting cyclic
-    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
-
-    // Initializing stack of traversed objects.
-    // It's done here since we only need them for objects and arrays comparison.
-    aStack = aStack || [];
-    bStack = bStack || [];
-    var length = aStack.length;
-    while (length--) {
-      // Linear search. Performance is inversely proportional to the number of
-      // unique nested structures.
-      if (aStack[length] === a) return bStack[length] === b;
-    }
-
-    // Add the first object to the stack of traversed objects.
-    aStack.push(a);
-    bStack.push(b);
-
-    // Recursively compare objects and arrays.
-    if (areArrays) {
-      // Compare array lengths to determine if a deep comparison is necessary.
-      length = a.length;
-      if (length !== b.length) return false;
-      // Deep compare the contents, ignoring non-numeric properties.
-      while (length--) {
-        if (!eq(a[length], b[length], aStack, bStack)) return false;
-      }
-    } else {
-      // Deep compare objects.
-      var _keys = keys(a), key;
-      length = _keys.length;
-      // Ensure that both objects contain the same number of properties before comparing deep equality.
-      if (keys(b).length !== length) return false;
-      while (length--) {
-        // Deep compare each member
-        key = _keys[length];
-        if (!(has$1(b, key) && eq(a[key], b[key], aStack, bStack))) return false;
-      }
-    }
-    // Remove the first object from the stack of traversed objects.
-    aStack.pop();
-    bStack.pop();
-    return true;
-  }
-
-  // Perform a deep comparison to check if two objects are equal.
-  function isEqual(a, b) {
-    return eq(a, b);
-  }
-
-  // Retrieve all the enumerable property names of an object.
-  function allKeys(obj) {
-    if (!isObject(obj)) return [];
-    var keys = [];
-    for (var key in obj) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Since the regular `Object.prototype.toString` type tests don't work for
-  // some types in IE 11, we use a fingerprinting heuristic instead, based
-  // on the methods. It's not great, but it's the best we got.
-  // The fingerprint method lists are defined below.
-  function ie11fingerprint(methods) {
-    var length = getLength(methods);
-    return function(obj) {
-      if (obj == null) return false;
-      // `Map`, `WeakMap` and `Set` have no enumerable keys.
-      var keys = allKeys(obj);
-      if (getLength(keys)) return false;
-      for (var i = 0; i < length; i++) {
-        if (!isFunction$1(obj[methods[i]])) return false;
-      }
-      // If we are testing against `WeakMap`, we need to ensure that
-      // `obj` doesn't have a `forEach` method in order to distinguish
-      // it from a regular `Map`.
-      return methods !== weakMapMethods || !isFunction$1(obj[forEachName]);
-    };
-  }
-
-  // In the interest of compact minification, we write
-  // each string in the fingerprints only once.
-  var forEachName = 'forEach',
-      hasName = 'has',
-      commonInit = ['clear', 'delete'],
-      mapTail = ['get', hasName, 'set'];
-
-  // `Map`, `WeakMap` and `Set` each have slightly different
-  // combinations of the above sublists.
-  var mapMethods = commonInit.concat(forEachName, mapTail),
-      weakMapMethods = commonInit.concat(mapTail),
-      setMethods = ['add'].concat(commonInit, forEachName, hasName);
-
-  var isMap = isIE11 ? ie11fingerprint(mapMethods) : tagTester('Map');
-
-  var isWeakMap = isIE11 ? ie11fingerprint(weakMapMethods) : tagTester('WeakMap');
-
-  var isSet = isIE11 ? ie11fingerprint(setMethods) : tagTester('Set');
-
-  var isWeakSet = tagTester('WeakSet');
-
-  // Retrieve the values of an object's properties.
-  function values(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var values = Array(length);
-    for (var i = 0; i < length; i++) {
-      values[i] = obj[_keys[i]];
-    }
-    return values;
-  }
-
-  // Convert an object into a list of `[key, value]` pairs.
-  // The opposite of `_.object` with one argument.
-  function pairs(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var pairs = Array(length);
-    for (var i = 0; i < length; i++) {
-      pairs[i] = [_keys[i], obj[_keys[i]]];
-    }
-    return pairs;
-  }
-
-  // Invert the keys and values of an object. The values must be serializable.
-  function invert(obj) {
-    var result = {};
-    var _keys = keys(obj);
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      result[obj[_keys[i]]] = _keys[i];
-    }
-    return result;
-  }
-
-  // Return a sorted list of the function names available on the object.
-  function functions(obj) {
-    var names = [];
-    for (var key in obj) {
-      if (isFunction$1(obj[key])) names.push(key);
-    }
-    return names.sort();
-  }
-
-  // An internal function for creating assigner functions.
-  function createAssigner(keysFunc, defaults) {
-    return function(obj) {
-      var length = arguments.length;
-      if (defaults) obj = Object(obj);
-      if (length < 2 || obj == null) return obj;
-      for (var index = 1; index < length; index++) {
-        var source = arguments[index],
-            keys = keysFunc(source),
-            l = keys.length;
-        for (var i = 0; i < l; i++) {
-          var key = keys[i];
-          if (!defaults || obj[key] === void 0) obj[key] = source[key];
-        }
-      }
-      return obj;
-    };
-  }
-
-  // Extend a given object with all the properties in passed-in object(s).
-  var extend = createAssigner(allKeys);
-
-  // Assigns a given object with all the own properties in the passed-in
-  // object(s).
-  // (https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Object/assign)
-  var extendOwn = createAssigner(keys);
-
-  // Fill in a given object with default properties.
-  var defaults = createAssigner(allKeys, true);
-
-  // Create a naked function reference for surrogate-prototype-swapping.
-  function ctor() {
-    return function(){};
-  }
-
-  // An internal function for creating a new object that inherits from another.
-  function baseCreate(prototype) {
-    if (!isObject(prototype)) return {};
-    if (nativeCreate) return nativeCreate(prototype);
-    var Ctor = ctor();
-    Ctor.prototype = prototype;
-    var result = new Ctor;
-    Ctor.prototype = null;
-    return result;
-  }
-
-  // Creates an object that inherits from the given prototype object.
-  // If additional properties are provided then they will be added to the
-  // created object.
-  function create(prototype, props) {
-    var result = baseCreate(prototype);
-    if (props) extendOwn(result, props);
-    return result;
-  }
-
-  // Create a (shallow-cloned) duplicate of an object.
-  function clone(obj) {
-    if (!isObject(obj)) return obj;
-    return isArray(obj) ? obj.slice() : extend({}, obj);
-  }
-
-  // Invokes `interceptor` with the `obj` and then returns `obj`.
-  // The primary purpose of this method is to "tap into" a method chain, in
-  // order to perform operations on intermediate results within the chain.
-  function tap(obj, interceptor) {
-    interceptor(obj);
-    return obj;
-  }
-
-  // Normalize a (deep) property `path` to array.
-  // Like `_.iteratee`, this function can be customized.
-  function toPath$1(path) {
-    return isArray(path) ? path : [path];
-  }
-  _$1.toPath = toPath$1;
-
-  // Internal wrapper for `_.toPath` to enable minification.
-  // Similar to `cb` for `_.iteratee`.
-  function toPath(path) {
-    return _$1.toPath(path);
-  }
-
-  // Internal function to obtain a nested property in `obj` along `path`.
-  function deepGet(obj, path) {
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      if (obj == null) return void 0;
-      obj = obj[path[i]];
-    }
-    return length ? obj : void 0;
-  }
-
-  // Get the value of the (deep) property on `path` from `object`.
-  // If any property in `path` does not exist or if the value is
-  // `undefined`, return `defaultValue` instead.
-  // The `path` is normalized through `_.toPath`.
-  function get(object, path, defaultValue) {
-    var value = deepGet(object, toPath(path));
-    return isUndefined(value) ? defaultValue : value;
-  }
-
-  // Shortcut function for checking if an object has a given property directly on
-  // itself (in other words, not on a prototype). Unlike the internal `has`
-  // function, this public version can also traverse nested properties.
-  function has(obj, path) {
-    path = toPath(path);
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      var key = path[i];
-      if (!has$1(obj, key)) return false;
-      obj = obj[key];
-    }
-    return !!length;
-  }
-
-  // Keep the identity function around for default iteratees.
-  function identity(value) {
-    return value;
-  }
-
-  // Returns a predicate for checking whether an object has a given set of
-  // `key:value` pairs.
-  function matcher(attrs) {
-    attrs = extendOwn({}, attrs);
-    return function(obj) {
-      return isMatch(obj, attrs);
-    };
-  }
-
-  // Creates a function that, when passed an object, will traverse that object’s
-  // properties down the given `path`, specified as an array of keys or indices.
-  function property(path) {
-    path = toPath(path);
-    return function(obj) {
-      return deepGet(obj, path);
-    };
-  }
-
-  // Internal function that returns an efficient (for current engines) version
-  // of the passed-in callback, to be repeatedly applied in other Underscore
-  // functions.
-  function optimizeCb(func, context, argCount) {
-    if (context === void 0) return func;
-    switch (argCount == null ? 3 : argCount) {
-      case 1: return function(value) {
-        return func.call(context, value);
-      };
-      // The 2-argument case is omitted because we’re not using it.
-      case 3: return function(value, index, collection) {
-        return func.call(context, value, index, collection);
-      };
-      case 4: return function(accumulator, value, index, collection) {
-        return func.call(context, accumulator, value, index, collection);
-      };
-    }
-    return function() {
-      return func.apply(context, arguments);
-    };
-  }
-
-  // An internal function to generate callbacks that can be applied to each
-  // element in a collection, returning the desired result — either `_.identity`,
-  // an arbitrary callback, a property matcher, or a property accessor.
-  function baseIteratee(value, context, argCount) {
-    if (value == null) return identity;
-    if (isFunction$1(value)) return optimizeCb(value, context, argCount);
-    if (isObject(value) && !isArray(value)) return matcher(value);
-    return property(value);
-  }
-
-  // External wrapper for our callback generator. Users may customize
-  // `_.iteratee` if they want additional predicate/iteratee shorthand styles.
-  // This abstraction hides the internal-only `argCount` argument.
-  function iteratee(value, context) {
-    return baseIteratee(value, context, Infinity);
-  }
-  _$1.iteratee = iteratee;
-
-  // The function we call internally to generate a callback. It invokes
-  // `_.iteratee` if overridden, otherwise `baseIteratee`.
-  function cb(value, context, argCount) {
-    if (_$1.iteratee !== iteratee) return _$1.iteratee(value, context);
-    return baseIteratee(value, context, argCount);
-  }
-
-  // Returns the results of applying the `iteratee` to each element of `obj`.
-  // In contrast to `_.map` it returns an object.
-  function mapObject(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = keys(obj),
-        length = _keys.length,
-        results = {};
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys[index];
-      results[currentKey] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function noop(){}
-
-  // Generates a function for a given object that returns a given property.
-  function propertyOf(obj) {
-    if (obj == null) return noop;
-    return function(path) {
-      return get(obj, path);
-    };
-  }
-
-  // Run a function **n** times.
-  function times(n, iteratee, context) {
-    var accum = Array(Math.max(0, n));
-    iteratee = optimizeCb(iteratee, context, 1);
-    for (var i = 0; i < n; i++) accum[i] = iteratee(i);
-    return accum;
-  }
-
-  // Return a random integer between `min` and `max` (inclusive).
-  function random(min, max) {
-    if (max == null) {
-      max = min;
-      min = 0;
-    }
-    return min + Math.floor(Math.random() * (max - min + 1));
-  }
-
-  // A (possibly faster) way to get the current timestamp as an integer.
-  var now = Date.now || function() {
-    return new Date().getTime();
-  };
-
-  // Internal helper to generate functions for escaping and unescaping strings
-  // to/from HTML interpolation.
-  function createEscaper(map) {
-    var escaper = function(match) {
-      return map[match];
-    };
-    // Regexes for identifying a key that needs to be escaped.
-    var source = '(?:' + keys(map).join('|') + ')';
-    var testRegexp = RegExp(source);
-    var replaceRegexp = RegExp(source, 'g');
-    return function(string) {
-      string = string == null ? '' : '' + string;
-      return testRegexp.test(string) ? string.replace(replaceRegexp, escaper) : string;
-    };
-  }
-
-  // Internal list of HTML entities for escaping.
-  var escapeMap = {
-    '&': '&amp;',
-    '<': '&lt;',
-    '>': '&gt;',
-    '"': '&quot;',
-    "'": '&#x27;',
-    '`': '&#x60;'
-  };
-
-  // Function for escaping strings to HTML interpolation.
-  var _escape = createEscaper(escapeMap);
-
-  // Internal list of HTML entities for unescaping.
-  var unescapeMap = invert(escapeMap);
-
-  // Function for unescaping strings from HTML interpolation.
-  var _unescape = createEscaper(unescapeMap);
-
-  // By default, Underscore uses ERB-style template delimiters. Change the
-  // following template settings to use alternative delimiters.
-  var templateSettings = _$1.templateSettings = {
-    evaluate: /<%([\s\S]+?)%>/g,
-    interpolate: /<%=([\s\S]+?)%>/g,
-    escape: /<%-([\s\S]+?)%>/g
-  };
-
-  // When customizing `_.templateSettings`, if you don't want to define an
-  // interpolation, evaluation or escaping regex, we need one that is
-  // guaranteed not to match.
-  var noMatch = /(.)^/;
-
-  // Certain characters need to be escaped so that they can be put into a
-  // string literal.
-  var escapes = {
-    "'": "'",
-    '\\': '\\',
-    '\r': 'r',
-    '\n': 'n',
-    '\u2028': 'u2028',
-    '\u2029': 'u2029'
-  };
-
-  var escapeRegExp = /\\|'|\r|\n|\u2028|\u2029/g;
-
-  function escapeChar(match) {
-    return '\\' + escapes[match];
-  }
-
-  // In order to prevent third-party code injection through
-  // `_.templateSettings.variable`, we test it against the following regular
-  // expression. It is intentionally a bit more liberal than just matching valid
-  // identifiers, but still prevents possible loopholes through defaults or
-  // destructuring assignment.
-  var bareIdentifier = /^\s*(\w|\$)+\s*$/;
-
-  // JavaScript micro-templating, similar to John Resig's implementation.
-  // Underscore templating handles arbitrary delimiters, preserves whitespace,
-  // and correctly escapes quotes within interpolated code.
-  // NB: `oldSettings` only exists for backwards compatibility.
-  function template(text, settings, oldSettings) {
-    if (!settings && oldSettings) settings = oldSettings;
-    settings = defaults({}, settings, _$1.templateSettings);
-
-    // Combine delimiters into one regular expression via alternation.
-    var matcher = RegExp([
-      (settings.escape || noMatch).source,
-      (settings.interpolate || noMatch).source,
-      (settings.evaluate || noMatch).source
-    ].join('|') + '|$', 'g');
-
-    // Compile the template source, escaping string literals appropriately.
-    var index = 0;
-    var source = "__p+='";
-    text.replace(matcher, function(match, escape, interpolate, evaluate, offset) {
-      source += text.slice(index, offset).replace(escapeRegExp, escapeChar);
-      index = offset + match.length;
-
-      if (escape) {
-        source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'";
-      } else if (interpolate) {
-        source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'";
-      } else if (evaluate) {
-        source += "';\n" + evaluate + "\n__p+='";
-      }
-
-      // Adobe VMs need the match returned to produce the correct offset.
-      return match;
-    });
-    source += "';\n";
-
-    var argument = settings.variable;
-    if (argument) {
-      // Insure against third-party code injection. (CVE-2021-23358)
-      if (!bareIdentifier.test(argument)) throw new Error(
-        'variable is not a bare identifier: ' + argument
-      );
-    } else {
-      // If a variable is not specified, place data values in local scope.
-      source = 'with(obj||{}){\n' + source + '}\n';
-      argument = 'obj';
-    }
-
-    source = "var __t,__p='',__j=Array.prototype.join," +
-      "print=function(){__p+=__j.call(arguments,'');};\n" +
-      source + 'return __p;\n';
-
-    var render;
-    try {
-      render = new Function(argument, '_', source);
-    } catch (e) {
-      e.source = source;
-      throw e;
-    }
-
-    var template = function(data) {
-      return render.call(this, data, _$1);
-    };
-
-    // Provide the compiled source as a convenience for precompilation.
-    template.source = 'function(' + argument + '){\n' + source + '}';
-
-    return template;
-  }
-
-  // Traverses the children of `obj` along `path`. If a child is a function, it
-  // is invoked with its parent as context. Returns the value of the final
-  // child, or `fallback` if any child is undefined.
-  function result(obj, path, fallback) {
-    path = toPath(path);
-    var length = path.length;
-    if (!length) {
-      return isFunction$1(fallback) ? fallback.call(obj) : fallback;
-    }
-    for (var i = 0; i < length; i++) {
-      var prop = obj == null ? void 0 : obj[path[i]];
-      if (prop === void 0) {
-        prop = fallback;
-        i = length; // Ensure we don't continue iterating.
-      }
-      obj = isFunction$1(prop) ? prop.call(obj) : prop;
-    }
-    return obj;
-  }
-
-  // Generate a unique integer id (unique within the entire client session).
-  // Useful for temporary DOM ids.
-  var idCounter = 0;
-  function uniqueId(prefix) {
-    var id = ++idCounter + '';
-    return prefix ? prefix + id : id;
-  }
-
-  // Start chaining a wrapped Underscore object.
-  function chain(obj) {
-    var instance = _$1(obj);
-    instance._chain = true;
-    return instance;
-  }
-
-  // Internal function to execute `sourceFunc` bound to `context` with optional
-  // `args`. Determines whether to execute a function as a constructor or as a
-  // normal function.
-  function executeBound(sourceFunc, boundFunc, context, callingContext, args) {
-    if (!(callingContext instanceof boundFunc)) return sourceFunc.apply(context, args);
-    var self = baseCreate(sourceFunc.prototype);
-    var result = sourceFunc.apply(self, args);
-    if (isObject(result)) return result;
-    return self;
-  }
-
-  // Partially apply a function by creating a version that has had some of its
-  // arguments pre-filled, without changing its dynamic `this` context. `_` acts
-  // as a placeholder by default, allowing any combination of arguments to be
-  // pre-filled. Set `_.partial.placeholder` for a custom placeholder argument.
-  var partial = restArguments(function(func, boundArgs) {
-    var placeholder = partial.placeholder;
-    var bound = function() {
-      var position = 0, length = boundArgs.length;
-      var args = Array(length);
-      for (var i = 0; i < length; i++) {
-        args[i] = boundArgs[i] === placeholder ? arguments[position++] : boundArgs[i];
-      }
-      while (position < arguments.length) args.push(arguments[position++]);
-      return executeBound(func, bound, this, this, args);
-    };
-    return bound;
-  });
-
-  partial.placeholder = _$1;
-
-  // Create a function bound to a given object (assigning `this`, and arguments,
-  // optionally).
-  var bind = restArguments(function(func, context, args) {
-    if (!isFunction$1(func)) throw new TypeError('Bind must be called on a function');
-    var bound = restArguments(function(callArgs) {
-      return executeBound(func, bound, context, this, args.concat(callArgs));
-    });
-    return bound;
-  });
-
-  // Internal helper for collection methods to determine whether a collection
-  // should be iterated as an array or as an object.
-  // Related: https://people.mozilla.org/~jorendorff/es6-draft.html#sec-tolength
-  // Avoids a very nasty iOS 8 JIT bug on ARM-64. #2094
-  var isArrayLike = createSizePropertyCheck(getLength);
-
-  // Internal implementation of a recursive `flatten` function.
-  function flatten$1(input, depth, strict, output) {
-    output = output || [];
-    if (!depth && depth !== 0) {
-      depth = Infinity;
-    } else if (depth <= 0) {
-      return output.concat(input);
-    }
-    var idx = output.length;
-    for (var i = 0, length = getLength(input); i < length; i++) {
-      var value = input[i];
-      if (isArrayLike(value) && (isArray(value) || isArguments$1(value))) {
-        // Flatten current level of array or arguments object.
-        if (depth > 1) {
-          flatten$1(value, depth - 1, strict, output);
-          idx = output.length;
-        } else {
-          var j = 0, len = value.length;
-          while (j < len) output[idx++] = value[j++];
-        }
-      } else if (!strict) {
-        output[idx++] = value;
-      }
-    }
-    return output;
-  }
-
-  // Bind a number of an object's methods to that object. Remaining arguments
-  // are the method names to be bound. Useful for ensuring that all callbacks
-  // defined on an object belong to it.
-  var bindAll = restArguments(function(obj, keys) {
-    keys = flatten$1(keys, false, false);
-    var index = keys.length;
-    if (index < 1) throw new Error('bindAll must be passed function names');
-    while (index--) {
-      var key = keys[index];
-      obj[key] = bind(obj[key], obj);
-    }
-    return obj;
-  });
-
-  // Memoize an expensive function by storing its results.
-  function memoize(func, hasher) {
-    var memoize = function(key) {
-      var cache = memoize.cache;
-      var address = '' + (hasher ? hasher.apply(this, arguments) : key);
-      if (!has$1(cache, address)) cache[address] = func.apply(this, arguments);
-      return cache[address];
-    };
-    memoize.cache = {};
-    return memoize;
-  }
-
-  // Delays a function for the given number of milliseconds, and then calls
-  // it with the arguments supplied.
-  var delay = restArguments(function(func, wait, args) {
-    return setTimeout(function() {
-      return func.apply(null, args);
-    }, wait);
-  });
-
-  // Defers a function, scheduling it to run after the current call stack has
-  // cleared.
-  var defer = partial(delay, _$1, 1);
-
-  // Returns a function, that, when invoked, will only be triggered at most once
-  // during a given window of time. Normally, the throttled function will run
-  // as much as it can, without ever going more than once per `wait` duration;
-  // but if you'd like to disable the execution on the leading edge, pass
-  // `{leading: false}`. To disable execution on the trailing edge, ditto.
-  function throttle(func, wait, options) {
-    var timeout, context, args, result;
-    var previous = 0;
-    if (!options) options = {};
-
-    var later = function() {
-      previous = options.leading === false ? 0 : now();
-      timeout = null;
-      result = func.apply(context, args);
-      if (!timeout) context = args = null;
-    };
-
-    var throttled = function() {
-      var _now = now();
-      if (!previous && options.leading === false) previous = _now;
-      var remaining = wait - (_now - previous);
-      context = this;
-      args = arguments;
-      if (remaining <= 0 || remaining > wait) {
-        if (timeout) {
-          clearTimeout(timeout);
-          timeout = null;
-        }
-        previous = _now;
-        result = func.apply(context, args);
-        if (!timeout) context = args = null;
-      } else if (!timeout && options.trailing !== false) {
-        timeout = setTimeout(later, remaining);
-      }
-      return result;
-    };
-
-    throttled.cancel = function() {
-      clearTimeout(timeout);
-      previous = 0;
-      timeout = context = args = null;
-    };
-
-    return throttled;
-  }
-
-  // When a sequence of calls of the returned function ends, the argument
-  // function is triggered. The end of a sequence is defined by the `wait`
-  // parameter. If `immediate` is passed, the argument function will be
-  // triggered at the beginning of the sequence instead of at the end.
-  function debounce(func, wait, immediate) {
-    var timeout, previous, args, result, context;
-
-    var later = function() {
-      var passed = now() - previous;
-      if (wait > passed) {
-        timeout = setTimeout(later, wait - passed);
-      } else {
-        timeout = null;
-        if (!immediate) result = func.apply(context, args);
-        // This check is needed because `func` can recursively invoke `debounced`.
-        if (!timeout) args = context = null;
-      }
-    };
-
-    var debounced = restArguments(function(_args) {
-      context = this;
-      args = _args;
-      previous = now();
-      if (!timeout) {
-        timeout = setTimeout(later, wait);
-        if (immediate) result = func.apply(context, args);
-      }
-      return result;
-    });
-
-    debounced.cancel = function() {
-      clearTimeout(timeout);
-      timeout = args = context = null;
-    };
-
-    return debounced;
-  }
-
-  // Returns the first function passed as an argument to the second,
-  // allowing you to adjust arguments, run code before and after, and
-  // conditionally execute the original function.
-  function wrap(func, wrapper) {
-    return partial(wrapper, func);
-  }
-
-  // Returns a negated version of the passed-in predicate.
-  function negate(predicate) {
-    return function() {
-      return !predicate.apply(this, arguments);
-    };
-  }
-
-  // Returns a function that is the composition of a list of functions, each
-  // consuming the return value of the function that follows.
-  function compose() {
-    var args = arguments;
-    var start = args.length - 1;
-    return function() {
-      var i = start;
-      var result = args[start].apply(this, arguments);
-      while (i--) result = args[i].call(this, result);
-      return result;
-    };
-  }
-
-  // Returns a function that will only be executed on and after the Nth call.
-  function after(times, func) {
-    return function() {
-      if (--times < 1) {
-        return func.apply(this, arguments);
-      }
-    };
-  }
-
-  // Returns a function that will only be executed up to (but not including) the
-  // Nth call.
-  function before(times, func) {
-    var memo;
-    return function() {
-      if (--times > 0) {
-        memo = func.apply(this, arguments);
-      }
-      if (times <= 1) func = null;
-      return memo;
-    };
-  }
-
-  // Returns a function that will be executed at most one time, no matter how
-  // often you call it. Useful for lazy initialization.
-  var once = partial(before, 2);
-
-  // Returns the first key on an object that passes a truth test.
-  function findKey(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = keys(obj), key;
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      key = _keys[i];
-      if (predicate(obj[key], key, obj)) return key;
-    }
-  }
-
-  // Internal function to generate `_.findIndex` and `_.findLastIndex`.
-  function createPredicateIndexFinder(dir) {
-    return function(array, predicate, context) {
-      predicate = cb(predicate, context);
-      var length = getLength(array);
-      var index = dir > 0 ? 0 : length - 1;
-      for (; index >= 0 && index < length; index += dir) {
-        if (predicate(array[index], index, array)) return index;
-      }
-      return -1;
-    };
-  }
-
-  // Returns the first index on an array-like that passes a truth test.
-  var findIndex = createPredicateIndexFinder(1);
-
-  // Returns the last index on an array-like that passes a truth test.
-  var findLastIndex = createPredicateIndexFinder(-1);
-
-  // Use a comparator function to figure out the smallest index at which
-  // an object should be inserted so as to maintain order. Uses binary search.
-  function sortedIndex(array, obj, iteratee, context) {
-    iteratee = cb(iteratee, context, 1);
-    var value = iteratee(obj);
-    var low = 0, high = getLength(array);
-    while (low < high) {
-      var mid = Math.floor((low + high) / 2);
-      if (iteratee(array[mid]) < value) low = mid + 1; else high = mid;
-    }
-    return low;
-  }
-
-  // Internal function to generate the `_.indexOf` and `_.lastIndexOf` functions.
-  function createIndexFinder(dir, predicateFind, sortedIndex) {
-    return function(array, item, idx) {
-      var i = 0, length = getLength(array);
-      if (typeof idx == 'number') {
-        if (dir > 0) {
-          i = idx >= 0 ? idx : Math.max(idx + length, i);
-        } else {
-          length = idx >= 0 ? Math.min(idx + 1, length) : idx + length + 1;
-        }
-      } else if (sortedIndex && idx && length) {
-        idx = sortedIndex(array, item);
-        return array[idx] === item ? idx : -1;
-      }
-      if (item !== item) {
-        idx = predicateFind(slice.call(array, i, length), isNaN$1);
-        return idx >= 0 ? idx + i : -1;
-      }
-      for (idx = dir > 0 ? i : length - 1; idx >= 0 && idx < length; idx += dir) {
-        if (array[idx] === item) return idx;
-      }
-      return -1;
-    };
-  }
-
-  // Return the position of the first occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  // If the array is large and already in sort order, pass `true`
-  // for **isSorted** to use binary search.
-  var indexOf = createIndexFinder(1, findIndex, sortedIndex);
-
-  // Return the position of the last occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  var lastIndexOf = createIndexFinder(-1, findLastIndex);
-
-  // Return the first value which passes a truth test.
-  function find(obj, predicate, context) {
-    var keyFinder = isArrayLike(obj) ? findIndex : findKey;
-    var key = keyFinder(obj, predicate, context);
-    if (key !== void 0 && key !== -1) return obj[key];
-  }
-
-  // Convenience version of a common use case of `_.find`: getting the first
-  // object containing specific `key:value` pairs.
-  function findWhere(obj, attrs) {
-    return find(obj, matcher(attrs));
-  }
-
-  // The cornerstone for collection functions, an `each`
-  // implementation, aka `forEach`.
-  // Handles raw objects in addition to array-likes. Treats all
-  // sparse array-likes as if they were dense.
-  function each(obj, iteratee, context) {
-    iteratee = optimizeCb(iteratee, context);
-    var i, length;
-    if (isArrayLike(obj)) {
-      for (i = 0, length = obj.length; i < length; i++) {
-        iteratee(obj[i], i, obj);
-      }
-    } else {
-      var _keys = keys(obj);
-      for (i = 0, length = _keys.length; i < length; i++) {
-        iteratee(obj[_keys[i]], _keys[i], obj);
-      }
-    }
-    return obj;
-  }
-
-  // Return the results of applying the iteratee to each element.
-  function map(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length,
-        results = Array(length);
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      results[index] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Internal helper to create a reducing function, iterating left or right.
-  function createReduce(dir) {
-    // Wrap code that reassigns argument variables in a separate function than
-    // the one that accesses `arguments.length` to avoid a perf hit. (#1991)
-    var reducer = function(obj, iteratee, memo, initial) {
-      var _keys = !isArrayLike(obj) && keys(obj),
-          length = (_keys || obj).length,
-          index = dir > 0 ? 0 : length - 1;
-      if (!initial) {
-        memo = obj[_keys ? _keys[index] : index];
-        index += dir;
-      }
-      for (; index >= 0 && index < length; index += dir) {
-        var currentKey = _keys ? _keys[index] : index;
-        memo = iteratee(memo, obj[currentKey], currentKey, obj);
-      }
-      return memo;
-    };
-
-    return function(obj, iteratee, memo, context) {
-      var initial = arguments.length >= 3;
-      return reducer(obj, optimizeCb(iteratee, context, 4), memo, initial);
-    };
-  }
-
-  // **Reduce** builds up a single result from a list of values, aka `inject`,
-  // or `foldl`.
-  var reduce = createReduce(1);
-
-  // The right-associative version of reduce, also known as `foldr`.
-  var reduceRight = createReduce(-1);
-
-  // Return all the elements that pass a truth test.
-  function filter(obj, predicate, context) {
-    var results = [];
-    predicate = cb(predicate, context);
-    each(obj, function(value, index, list) {
-      if (predicate(value, index, list)) results.push(value);
-    });
-    return results;
-  }
-
-  // Return all the elements for which a truth test fails.
-  function reject(obj, predicate, context) {
-    return filter(obj, negate(cb(predicate)), context);
-  }
-
-  // Determine whether all of the elements pass a truth test.
-  function every(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (!predicate(obj[currentKey], currentKey, obj)) return false;
-    }
-    return true;
-  }
-
-  // Determine if at least one element in the object passes a truth test.
-  function some(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (predicate(obj[currentKey], currentKey, obj)) return true;
-    }
-    return false;
-  }
-
-  // Determine if the array or object contains a given item (using `===`).
-  function contains(obj, item, fromIndex, guard) {
-    if (!isArrayLike(obj)) obj = values(obj);
-    if (typeof fromIndex != 'number' || guard) fromIndex = 0;
-    return indexOf(obj, item, fromIndex) >= 0;
-  }
-
-  // Invoke a method (with arguments) on every item in a collection.
-  var invoke = restArguments(function(obj, path, args) {
-    var contextPath, func;
-    if (isFunction$1(path)) {
-      func = path;
-    } else {
-      path = toPath(path);
-      contextPath = path.slice(0, -1);
-      path = path[path.length - 1];
-    }
-    return map(obj, function(context) {
-      var method = func;
-      if (!method) {
-        if (contextPath && contextPath.length) {
-          context = deepGet(context, contextPath);
-        }
-        if (context == null) return void 0;
-        method = context[path];
-      }
-      return method == null ? method : method.apply(context, args);
-    });
-  });
-
-  // Convenience version of a common use case of `_.map`: fetching a property.
-  function pluck(obj, key) {
-    return map(obj, property(key));
-  }
-
-  // Convenience version of a common use case of `_.filter`: selecting only
-  // objects containing specific `key:value` pairs.
-  function where(obj, attrs) {
-    return filter(obj, matcher(attrs));
-  }
-
-  // Return the maximum element (or element-based computation).
-  function max(obj, iteratee, context) {
-    var result = -Infinity, lastComputed = -Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value > result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed > lastComputed || computed === -Infinity && result === -Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Return the minimum element (or element-based computation).
-  function min(obj, iteratee, context) {
-    var result = Infinity, lastComputed = Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value < result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed < lastComputed || computed === Infinity && result === Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Sample **n** random values from a collection using the modern version of the
-  // [Fisher-Yates shuffle](https://en.wikipedia.org/wiki/Fisher–Yates_shuffle).
-  // If **n** is not specified, returns a single random element.
-  // The internal `guard` argument allows it to work with `_.map`.
-  function sample(obj, n, guard) {
-    if (n == null || guard) {
-      if (!isArrayLike(obj)) obj = values(obj);
-      return obj[random(obj.length - 1)];
-    }
-    var sample = isArrayLike(obj) ? clone(obj) : values(obj);
-    var length = getLength(sample);
-    n = Math.max(Math.min(n, length), 0);
-    var last = length - 1;
-    for (var index = 0; index < n; index++) {
-      var rand = random(index, last);
-      var temp = sample[index];
-      sample[index] = sample[rand];
-      sample[rand] = temp;
-    }
-    return sample.slice(0, n);
-  }
-
-  // Shuffle a collection.
-  function shuffle(obj) {
-    return sample(obj, Infinity);
-  }
-
-  // Sort the object's values by a criterion produced by an iteratee.
-  function sortBy(obj, iteratee, context) {
-    var index = 0;
-    iteratee = cb(iteratee, context);
-    return pluck(map(obj, function(value, key, list) {
-      return {
-        value: value,
-        index: index++,
-        criteria: iteratee(value, key, list)
-      };
-    }).sort(function(left, right) {
-      var a = left.criteria;
-      var b = right.criteria;
-      if (a !== b) {
-        if (a > b || a === void 0) return 1;
-        if (a < b || b === void 0) return -1;
-      }
-      return left.index - right.index;
-    }), 'value');
-  }
-
-  // An internal function used for aggregate "group by" operations.
-  function group(behavior, partition) {
-    return function(obj, iteratee, context) {
-      var result = partition ? [[], []] : {};
-      iteratee = cb(iteratee, context);
-      each(obj, function(value, index) {
-        var key = iteratee(value, index, obj);
-        behavior(result, value, key);
-      });
-      return result;
-    };
-  }
-
-  // Groups the object's values by a criterion. Pass either a string attribute
-  // to group by, or a function that returns the criterion.
-  var groupBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key].push(value); else result[key] = [value];
-  });
-
-  // Indexes the object's values by a criterion, similar to `_.groupBy`, but for
-  // when you know that your index values will be unique.
-  var indexBy = group(function(result, value, key) {
-    result[key] = value;
-  });
-
-  // Counts instances of an object that group by a certain criterion. Pass
-  // either a string attribute to count by, or a function that returns the
-  // criterion.
-  var countBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key]++; else result[key] = 1;
-  });
-
-  // Split a collection into two arrays: one whose elements all pass the given
-  // truth test, and one whose elements all do not pass the truth test.
-  var partition = group(function(result, value, pass) {
-    result[pass ? 0 : 1].push(value);
-  }, true);
-
-  // Safely create a real, live array from anything iterable.
-  var reStrSymbol = /[^\ud800-\udfff]|[\ud800-\udbff][\udc00-\udfff]|[\ud800-\udfff]/g;
-  function toArray(obj) {
-    if (!obj) return [];
-    if (isArray(obj)) return slice.call(obj);
-    if (isString(obj)) {
-      // Keep surrogate pair characters together.
-      return obj.match(reStrSymbol);
-    }
-    if (isArrayLike(obj)) return map(obj, identity);
-    return values(obj);
-  }
-
-  // Return the number of elements in a collection.
-  function size(obj) {
-    if (obj == null) return 0;
-    return isArrayLike(obj) ? obj.length : keys(obj).length;
-  }
-
-  // Internal `_.pick` helper function to determine whether `key` is an enumerable
-  // property name of `obj`.
-  function keyInObj(value, key, obj) {
-    return key in obj;
-  }
-
-  // Return a copy of the object only containing the allowed properties.
-  var pick = restArguments(function(obj, keys) {
-    var result = {}, iteratee = keys[0];
-    if (obj == null) return result;
-    if (isFunction$1(iteratee)) {
-      if (keys.length > 1) iteratee = optimizeCb(iteratee, keys[1]);
-      keys = allKeys(obj);
-    } else {
-      iteratee = keyInObj;
-      keys = flatten$1(keys, false, false);
-      obj = Object(obj);
-    }
-    for (var i = 0, length = keys.length; i < length; i++) {
-      var key = keys[i];
-      var value = obj[key];
-      if (iteratee(value, key, obj)) result[key] = value;
-    }
-    return result;
-  });
-
-  // Return a copy of the object without the disallowed properties.
-  var omit = restArguments(function(obj, keys) {
-    var iteratee = keys[0], context;
-    if (isFunction$1(iteratee)) {
-      iteratee = negate(iteratee);
-      if (keys.length > 1) context = keys[1];
-    } else {
-      keys = map(flatten$1(keys, false, false), String);
-      iteratee = function(value, key) {
-        return !contains(keys, key);
-      };
-    }
-    return pick(obj, iteratee, context);
-  });
-
-  // Returns everything but the last entry of the array. Especially useful on
-  // the arguments object. Passing **n** will return all the values in
-  // the array, excluding the last N.
-  function initial(array, n, guard) {
-    return slice.call(array, 0, Math.max(0, array.length - (n == null || guard ? 1 : n)));
-  }
-
-  // Get the first element of an array. Passing **n** will return the first N
-  // values in the array. The **guard** check allows it to work with `_.map`.
-  function first(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[0];
-    return initial(array, array.length - n);
-  }
-
-  // Returns everything but the first entry of the `array`. Especially useful on
-  // the `arguments` object. Passing an **n** will return the rest N values in the
-  // `array`.
-  function rest(array, n, guard) {
-    return slice.call(array, n == null || guard ? 1 : n);
-  }
-
-  // Get the last element of an array. Passing **n** will return the last N
-  // values in the array.
-  function last(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[array.length - 1];
-    return rest(array, Math.max(0, array.length - n));
-  }
-
-  // Trim out all falsy values from an array.
-  function compact(array) {
-    return filter(array, Boolean);
-  }
-
-  // Flatten out an array, either recursively (by default), or up to `depth`.
-  // Passing `true` or `false` as `depth` means `1` or `Infinity`, respectively.
-  function flatten(array, depth) {
-    return flatten$1(array, depth, false);
-  }
-
-  // Take the difference between one array and a number of other arrays.
-  // Only the elements present in just the first array will remain.
-  var difference = restArguments(function(array, rest) {
-    rest = flatten$1(rest, true, true);
-    return filter(array, function(value){
-      return !contains(rest, value);
-    });
-  });
-
-  // Return a version of the array that does not contain the specified value(s).
-  var without = restArguments(function(array, otherArrays) {
-    return difference(array, otherArrays);
-  });
-
-  // Produce a duplicate-free version of the array. If the array has already
-  // been sorted, you have the option of using a faster algorithm.
-  // The faster algorithm will not work with an iteratee if the iteratee
-  // is not a one-to-one function, so providing an iteratee will disable
-  // the faster algorithm.
-  function uniq(array, isSorted, iteratee, context) {
-    if (!isBoolean(isSorted)) {
-      context = iteratee;
-      iteratee = isSorted;
-      isSorted = false;
-    }
-    if (iteratee != null) iteratee = cb(iteratee, context);
-    var result = [];
-    var seen = [];
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var value = array[i],
-          computed = iteratee ? iteratee(value, i, array) : value;
-      if (isSorted && !iteratee) {
-        if (!i || seen !== computed) result.push(value);
-        seen = computed;
-      } else if (iteratee) {
-        if (!contains(seen, computed)) {
-          seen.push(computed);
-          result.push(value);
-        }
-      } else if (!contains(result, value)) {
-        result.push(value);
-      }
-    }
-    return result;
-  }
-
-  // Produce an array that contains the union: each distinct element from all of
-  // the passed-in arrays.
-  var union = restArguments(function(arrays) {
-    return uniq(flatten$1(arrays, true, true));
-  });
-
-  // Produce an array that contains every item shared between all the
-  // passed-in arrays.
-  function intersection(array) {
-    var result = [];
-    var argsLength = arguments.length;
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var item = array[i];
-      if (contains(result, item)) continue;
-      var j;
-      for (j = 1; j < argsLength; j++) {
-        if (!contains(arguments[j], item)) break;
-      }
-      if (j === argsLength) result.push(item);
-    }
-    return result;
-  }
-
-  // Complement of zip. Unzip accepts an array of arrays and groups
-  // each array's elements on shared indices.
-  function unzip(array) {
-    var length = array && max(array, getLength).length || 0;
-    var result = Array(length);
-
-    for (var index = 0; index < length; index++) {
-      result[index] = pluck(array, index);
-    }
-    return result;
-  }
-
-  // Zip together multiple lists into a single array -- elements that share
-  // an index go together.
-  var zip = restArguments(unzip);
-
-  // Converts lists into objects. Pass either a single array of `[key, value]`
-  // pairs, or two parallel arrays of the same length -- one of keys, and one of
-  // the corresponding values. Passing by pairs is the reverse of `_.pairs`.
-  function object(list, values) {
-    var result = {};
-    for (var i = 0, length = getLength(list); i < length; i++) {
-      if (values) {
-        result[list[i]] = values[i];
-      } else {
-        result[list[i][0]] = list[i][1];
-      }
-    }
-    return result;
-  }
-
-  // Generate an integer Array containing an arithmetic progression. A port of
-  // the native Python `range()` function. See
-  // [the Python documentation](https://docs.python.org/library/functions.html#range).
-  function range(start, stop, step) {
-    if (stop == null) {
-      stop = start || 0;
-      start = 0;
-    }
-    if (!step) {
-      step = stop < start ? -1 : 1;
-    }
-
-    var length = Math.max(Math.ceil((stop - start) / step), 0);
-    var range = Array(length);
-
-    for (var idx = 0; idx < length; idx++, start += step) {
-      range[idx] = start;
-    }
-
-    return range;
-  }
-
-  // Chunk a single array into multiple arrays, each containing `count` or fewer
-  // items.
-  function chunk(array, count) {
-    if (count == null || count < 1) return [];
-    var result = [];
-    var i = 0, length = array.length;
-    while (i < length) {
-      result.push(slice.call(array, i, i += count));
-    }
-    return result;
-  }
-
-  // Helper function to continue chaining intermediate results.
-  function chainResult(instance, obj) {
-    return instance._chain ? _$1(obj).chain() : obj;
-  }
-
-  // Add your own custom functions to the Underscore object.
-  function mixin(obj) {
-    each(functions(obj), function(name) {
-      var func = _$1[name] = obj[name];
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diff --git a/v0.4.0/_static/underscore.js b/v0.4.0/_static/underscore.js
deleted file mode 100644
index cf177d428..000000000
--- a/v0.4.0/_static/underscore.js
+++ /dev/null
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-  <section id="contributing">
-<h1>Contributing<a class="headerlink" href="#contributing" title="Permalink to this heading">¶</a></h1>
-<section id="thanks-for-your-help">
-<h2>Thanks for Your Help!<a class="headerlink" href="#thanks-for-your-help" title="Permalink to this heading">¶</a></h2>
-<p>Contributing is so kind of you. In SaltProc, all contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome.</p>
-<p>The <a class="reference external" href="https://github.com/arfc/saltproc/issues">GitHub “issues” tab</a> contains some issues labeled “Difficulty:1-Beginner”. Those are open issues that would be a good quick way to get started. Browse them to see if you want to get started on one.</p>
-<section id="bug-reports">
-<h3>Bug Reports<a class="headerlink" href="#bug-reports" title="Permalink to this heading">¶</a></h3>
-<p>Is something in the code not working? Consider making a bug report! In particular:</p>
-<ul class="simple">
-<li><p>Please include a short but detailed, self-contained Python snippet or explanation for reproducing the problem.</p></li>
-<li><p>Explain what the expected behavior was, and what you saw instead.</p></li>
-</ul>
-</section>
-<section id="feature-requests">
-<h3>Feature Requests<a class="headerlink" href="#feature-requests" title="Permalink to this heading">¶</a></h3>
-<p>If you have an idea that could add to or improve SaltProc, and know how to implement it, consider making a Feature Request!</p>
-</section>
-<section id="discussion">
-<h3>Discussion<a class="headerlink" href="#discussion" title="Permalink to this heading">¶</a></h3>
-<p>If you</p>
-<ul class="simple">
-<li><p>have feedback or a feature idea that aren’t concrete/focused enough to go into a Feature Request Issue</p></li>
-<li><p>want to show off cool work you have done with the software</p></li>
-</ul>
-<p>please use our <a class="reference external" href="https://github.com/arfc/saltproc/discussions">Discussions page</a>!</p>
-<section id="instructions-for-setting-up-a-development-environment">
-<h4>Instructions for setting up a development environment<a class="headerlink" href="#instructions-for-setting-up-a-development-environment" title="Permalink to this heading">¶</a></h4>
-<p>The SaltProc is compatible with Python &gt;=3.5. Anaconda is the recommended distribution to use to work on SAltProc; we will assume that if you want to use another distribution or your own set up, you can translate the instructions.</p>
-<p>You can download Anaconda at <a class="reference external" href="https://www.continuum.io/Downloads">https://www.continuum.io/Downloads</a> for the full install. You can also download a mini Anaconda install for a bare-bones install – this is good for a build server or if you don’t have much space. The mini Anaconda installs are available at <a class="reference external" href="https://conda.io/miniconda.html">https://conda.io/miniconda.html</a>.</p>
-<p>Once your Anaconda package is installed and available, create a Python 3.6 environment in Anaconda –</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">conda</span> <span class="n">create</span> <span class="o">-</span><span class="n">q</span> <span class="o">-</span><span class="n">n</span> <span class="n">saltproc</span><span class="o">-</span><span class="n">test</span><span class="o">-</span><span class="n">environment</span> <span class="n">python</span><span class="o">=</span><span class="mf">3.6</span> <span class="n">scipy</span> <span class="n">numpy</span> <span class="n">matplotlib</span> <span class="n">pytest</span> <span class="n">pytables</span> <span class="n">flake8</span>
-</pre></div>
-</div>
-<p>Each of these commands will take a bit of time – give it a few minutes to download and install the packages and their dependences. Once complete, switch to each and install additional packages needed to run and test.</p>
-<p>Activate the 3.6 environment and install pyne, networkx and pydotplus</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">source</span> <span class="n">activate</span> <span class="n">saltproc</span><span class="o">-</span><span class="n">test</span><span class="o">-</span><span class="n">environment</span>
-<span class="n">conda</span> <span class="n">install</span> <span class="o">-</span><span class="n">c</span> <span class="n">conda</span><span class="o">-</span><span class="n">forge</span> <span class="n">pyne</span> <span class="n">networkx</span> <span class="n">pydotplus</span>
-</pre></div>
-</div>
-</section>
-<section id="setup-serpent-monte-carlo-code-environment">
-<h4>Setup Serpent Monte Carlo code environment<a class="headerlink" href="#setup-serpent-monte-carlo-code-environment" title="Permalink to this heading">¶</a></h4>
-<p>The SaltProc assumes that Serpent directory is added in <code class="docutils literal notranslate"><span class="pre">$PATH</span></code> as follows:</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">export</span> <span class="n">PATH</span><span class="o">=</span><span class="s2">&quot;/path/to/serpent/executable:$PATH&quot;</span>
-</pre></div>
-</div>
-</section>
-<section id="run-the-tests">
-<h4>Run the tests<a class="headerlink" href="#run-the-tests" title="Permalink to this heading">¶</a></h4>
-<p>Tests are automatically detected and run with pytest. Start in the root directory where you have cloned the saltproc repository and run in development environment</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">source</span> <span class="n">active</span> <span class="n">saltproc</span><span class="o">-</span><span class="n">test</span><span class="o">-</span><span class="n">environment</span>
-<span class="n">py</span><span class="o">.</span><span class="n">test</span> <span class="n">saltproc</span>
-</pre></div>
-</div>
-</section>
-<section id="run-style-tests-with-flake8">
-<h4>Run style tests with flake8<a class="headerlink" href="#run-style-tests-with-flake8" title="Permalink to this heading">¶</a></h4>
-<p>Adherance to style checks in flake8 is encouraged though not strictly enforced. While you should not feel compelled to fix existing failures, please do not add additional flake8 issues.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">run</span> <span class="n">flake8</span> <span class="kn">from</span> <span class="nn">the</span> <span class="n">root</span> <span class="n">of</span> <span class="n">the</span> <span class="n">pyrk</span> <span class="n">working</span> <span class="n">directory</span> <span class="n">to</span> <span class="n">get</span> <span class="nb">all</span> <span class="n">flake8</span> <span class="n">issues</span>
-<span class="n">run</span> <span class="n">flake8</span> <span class="ow">and</span> <span class="n">provide</span> <span class="n">a</span> <span class="n">filename</span> <span class="n">to</span> <span class="n">just</span> <span class="n">run</span> <span class="n">checks</span> <span class="n">on</span> <span class="n">that</span> <span class="n">file</span>
-</pre></div>
-</div>
-</section>
-<section id="pull-requests">
-<h4>Pull Requests<a class="headerlink" href="#pull-requests" title="Permalink to this heading">¶</a></h4>
-<p>Please use the provided pull request template. In particular:</p>
-<ul class="simple">
-<li><p><strong>Make sure the test suite passes</strong> on your computer. To do so, run <code class="docutils literal notranslate"><span class="pre">py.test</span> <span class="pre">saltproc</span></code> in the repository directory. At a minumum, you must run the tests requring serpent locally as they are not tested by our CI</p></li>
-<li><p>Describe your feature/change/fix in the release notes (located in <code class="docutils literal notranslate"><span class="pre">doc/releasenotes</span></code>) for the currently in-development release version. Use the descriptive comments and examples as reference.</p></li>
-<li><p>Please reference relevant Github issues in your commit message using <code class="docutils literal notranslate"><span class="pre">GH1234</span></code> or <code class="docutils literal notranslate"><span class="pre">#1234</span></code>.</p></li>
-<li><p>Changes should be PEP8 compatible <a class="reference external" href="http://www.python.org/dev/peps/pep-0008/">PEP8</a>.</p></li>
-<li><p>Keep style fixes to a separate commit to make your PR more readable.</p></li>
-<li><p>Docstrings ideally follow the <a class="reference external" href="https://pythonhosted.org/an_example_pypi_project/sphinx.html#function-definitions">sphinx autodoc</a></p></li>
-<li><p>Write tests.</p></li>
-<li><p>When writing tests, please make sure they are in a <code class="docutils literal notranslate"><span class="pre">tests</span></code> directory.</p></li>
-<li><p>When you start working on a PR, start by creating a new branch pointing at the latest commit on github master.</p></li>
-<li><p>The SaltProc copyright policy is detailed in the <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/LICENSE">LICENSE</a>.</p></li>
-</ul>
-</section>
-</section>
-<section id="more-developer-docs">
-<h3>More developer docs<a class="headerlink" href="#more-developer-docs" title="Permalink to this heading">¶</a></h3>
-<ul class="simple">
-<li><p>We are working on it.</p></li>
-</ul>
-</section>
-<section id="meta">
-<h3>Meta<a class="headerlink" href="#meta" title="Permalink to this heading">¶</a></h3>
-<p>Note, this contributing file was adapted from the one at the <a class="reference external" href="https://github.com/pydata/pandas">pandas</a> repo. Thanks pandas!</p>
-</section>
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-           <div itemprop="articleBody">
-             
-  <section id="examples">
-<h1>Examples<a class="headerlink" href="#examples" title="Permalink to this heading">¶</a></h1>
-<p>A number of examples are present in the <a class="reference external" href="https://github.com/arfc/saltproc/tree/master/examples">examples directory</a> provided with the source code.</p>
-<p>Transatomic Power Molten Salt Reactor example can be run with:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span> /path/to/saltproc
-python saltproc -i examples/tap/tap_main.json
-</pre></div>
-</div>
-<p>In the example above, <code class="docutils literal notranslate"><span class="pre">path/to/saltproc</span></code> is, of course, the path to the main
-saltproc directory, containing <code class="docutils literal notranslate"><span class="pre">setup.py</span></code>. The <code class="docutils literal notranslate"><span class="pre">tap_main.json</span></code> is the main
-Saltproc input file, which contains paths to Serpent input file
-(<code class="docutils literal notranslate"><span class="pre">tap.serpent</span></code>), DOT-file with reprocessing scheme (<code class="docutils literal notranslate"><span class="pre">tap.dot</span></code>), and
-reprocessing system components’ detailed description (<code class="docutils literal notranslate"><span class="pre">tap_objects.json</span></code>).</p>
-<p>Similarly, Molten Salt Breeder Reactor example can be run with:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python saltproc -i examples/msbr/msbr_main.json
-</pre></div>
-</div>
-</section>
-
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diff --git a/v0.4.0/genindex.html b/v0.4.0/genindex.html
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-
-<div class="genindex-jumpbox">
- <a href="#_"><strong>_</strong></a>
- | <a href="#A"><strong>A</strong></a>
- | <a href="#C"><strong>C</strong></a>
- | <a href="#D"><strong>D</strong></a>
- | <a href="#E"><strong>E</strong></a>
- | <a href="#G"><strong>G</strong></a>
- | <a href="#H"><strong>H</strong></a>
- | <a href="#I"><strong>I</strong></a>
- | <a href="#K"><strong>K</strong></a>
- | <a href="#L"><strong>L</strong></a>
- | <a href="#M"><strong>M</strong></a>
- | <a href="#P"><strong>P</strong></a>
- | <a href="#Q"><strong>Q</strong></a>
- | <a href="#R"><strong>R</strong></a>
- | <a href="#S"><strong>S</strong></a>
- | <a href="#T"><strong>T</strong></a>
- | <a href="#W"><strong>W</strong></a>
- 
-</div>
-<h2 id="_">_</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__">__add__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__">__deepcopy__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__">__eq__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.__init__">__init__() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-        <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__">(saltproc.materialflow.Materialflow method)</a>
-</li>
-        <li><a href="src/saltproc.process.html#saltproc.process.Process.__init__">(saltproc.process.Process method)</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor.__init__">(saltproc.reactor.Reactor method)</a>
-</li>
-        <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.__init__">(saltproc.separator.Separator method)</a>
-</li>
-        <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.__init__">(saltproc.simulation.Simulation method)</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.__init__">(saltproc.sparger.Sparger method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__">__rmul__() (saltproc.materialflow.Materialflow method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="A">A</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.area">area (saltproc.sparger.Sparger attribute)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="C">C</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.calc_rem_efficiency">calc_rem_efficiency() (saltproc.process.Process method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.separator.html#id0">(saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency">[1]</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#id0">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par">change_sim_par() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.check_mass_conservation">check_mass_conservation() (saltproc.process.Process method)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.check_restart">check_restart() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.check_switch_geo_trigger">check_switch_geo_trigger() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.convert_nuclide_name_serpent_to_zam">convert_nuclide_name_serpent_to_zam() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs">copy_pymat_attrs() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile">create_iter_matfile() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_nuclide_name_map_zam_to_serpent">create_nuclide_name_map_zam_to_serpent() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="D">D</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.db">db (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.db">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.deltap">deltap (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode">Depcode (class in saltproc.depcode)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent">DepcodeSerpent (class in saltproc.depcode)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id1">description() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.description">[1]</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id1">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.description">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.sparger.html#id2">diffusivity (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.diffusivity">[1]</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.do">do (saltproc.separator.Separator attribute)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.dp">dp (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.dp">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="E">E</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id2">eff() (saltproc.separator.Separator method)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.eff">[1]</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id3">(saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eff">[1]</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id4">eps() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.eps">[1]</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#id5">exp_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.exp_const">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="G">G</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id6">gas_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.gas_const">[1]</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass">get_mass() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name">get_nuc_name() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="H">H</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#id7">h_const (saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.h_const">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="I">I</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">insert_path_to_geometry() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="K">K</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#id3">k (saltproc.separator.Separator attribute)</a>, <a href="src/saltproc.separator.html#saltproc.separator.Separator.k">[1]</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="L">L</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.length">length (saltproc.sparger.Sparger attribute)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="M">M</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow">Materialflow (class in saltproc.materialflow)</a>
-</li>
-      <li>
-    module
-
-      <ul>
-        <li><a href="src/saltproc.html#module-saltproc">saltproc</a>
-</li>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">saltproc.app</a>
-</li>
-        <li><a href="src/saltproc.depcode.html#module-saltproc.depcode">saltproc.depcode</a>
-</li>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">saltproc.materialflow</a>
-</li>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">saltproc.process</a>
-</li>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">saltproc.reactor</a>
-</li>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">saltproc.separator</a>
-</li>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">saltproc.simulation</a>
-</li>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">saltproc.sparger</a>
-</li>
-        <li><a href="src/saltproc.tests.html#module-saltproc.tests">saltproc.tests</a>
-</li>
-        <li><a href="src/saltproc.tests.test_app.html#module-saltproc.tests.test_app">saltproc.tests.test_app</a>
-</li>
-        <li><a href="src/saltproc.tests.test_depcode.html#module-saltproc.tests.test_depcode">saltproc.tests.test_depcode</a>
-</li>
-        <li><a href="src/saltproc.tests.test_materialflow.html#module-saltproc.tests.test_materialflow">saltproc.tests.test_materialflow</a>
-</li>
-        <li><a href="src/saltproc.tests.test_process.html#module-saltproc.tests.test_process">saltproc.tests.test_process</a>
-</li>
-        <li><a href="src/saltproc.tests.test_separator.html#module-saltproc.tests.test_separator">saltproc.tests.test_separator</a>
-</li>
-        <li><a href="src/saltproc.tests.test_simulation.html#module-saltproc.tests.test_simulation">saltproc.tests.test_simulation</a>
-</li>
-        <li><a href="src/saltproc.tests.test_sparger.html#module-saltproc.tests.test_sparger">saltproc.tests.test_sparger</a>
-</li>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">saltproc.version</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="P">P</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.parse_arguments">parse_arguments() (in module saltproc.app)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr">print_attr() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process">Process (class in saltproc.process)</a>
-</li>
-  </ul></td>
-</tr></table>
-
-<h2 id="Q">Q</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_he">q_he (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_he">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.q_salt">q_salt (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.q_salt">(saltproc.sparger.Sparger attribute)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="R">R</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.reactor.html#saltproc.reactor.Reactor">Reactor (class in saltproc.reactor)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp">read_dep_comp() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_info">read_depcode_info() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_step_param">read_depcode_step_param() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_dot">read_dot() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_feeds_from_input">read_feeds_from_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.read_k_eds_delta">read_k_eds_delta() (saltproc.simulation.Simulation method)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_main_input">read_main_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_plaintext_file">read_plaintext_file() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.read_processes_from_input">read_processes_from_input() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.refill">refill() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.process.html#saltproc.process.Process.rem_elements">rem_elements() (saltproc.process.Process method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">replace_burnup_parameters() (saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.reprocessing">reprocessing() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.app.html#saltproc.app.run">run() (in module saltproc.app)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode">run_depcode() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="S">S</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc
-
-      <ul>
-        <li><a href="src/saltproc.html#module-saltproc">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.app
-
-      <ul>
-        <li><a href="src/saltproc.app.html#module-saltproc.app">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.depcode
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#module-saltproc.depcode">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.materialflow
-
-      <ul>
-        <li><a href="src/saltproc.materialflow.html#module-saltproc.materialflow">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.process
-
-      <ul>
-        <li><a href="src/saltproc.process.html#module-saltproc.process">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.reactor
-
-      <ul>
-        <li><a href="src/saltproc.reactor.html#module-saltproc.reactor">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.separator
-
-      <ul>
-        <li><a href="src/saltproc.separator.html#module-saltproc.separator">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.simulation
-
-      <ul>
-        <li><a href="src/saltproc.simulation.html#module-saltproc.simulation">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.sparger
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#module-saltproc.sparger">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests
-
-      <ul>
-        <li><a href="src/saltproc.tests.html#module-saltproc.tests">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_app
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_app.html#module-saltproc.tests.test_app">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_depcode
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_depcode.html#module-saltproc.tests.test_depcode">module</a>
-</li>
-      </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li>
-    saltproc.tests.test_materialflow
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_materialflow.html#module-saltproc.tests.test_materialflow">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_process
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_process.html#module-saltproc.tests.test_process">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_separator
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_separator.html#module-saltproc.tests.test_separator">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_simulation
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_simulation.html#module-saltproc.tests.test_simulation">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.tests.test_sparger
-
-      <ul>
-        <li><a href="src/saltproc.tests.test_sparger.html#module-saltproc.tests.test_sparger">module</a>
-</li>
-      </ul></li>
-      <li>
-    saltproc.version
-
-      <ul>
-        <li><a href="src/saltproc.version.html#module-saltproc.version">module</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow">scale_matflow() (saltproc.materialflow.Materialflow method)</a>
-</li>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator">Separator (class in saltproc.separator)</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#id8">sherwood() (saltproc.sparger.Sparger method)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.sherwood">[1]</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation">Simulation (class in saltproc.simulation)</a>
-</li>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger">Sparger (class in saltproc.sparger)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_after_repr">store_after_repr() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_mat_data">store_mat_data() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_init_info">store_run_init_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.simulation.html#saltproc.simulation.Simulation.store_run_step_info">store_run_step_info() (saltproc.simulation.Simulation method)</a>
-</li>
-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.switch_to_next_geometry">switch_to_next_geometry() (saltproc.depcode.Depcode method)</a>
-
-      <ul>
-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.switch_to_next_geometry">(saltproc.depcode.DepcodeSerpent method)</a>
-</li>
-      </ul></li>
-  </ul></td>
-</tr></table>
-
-<h2 id="T">T</h2>
-<table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.separator.html#saltproc.separator.Separator.temp_room">temp_room (saltproc.separator.Separator attribute)</a>
-
-      <ul>
-        <li><a href="src/saltproc.sparger.html#id9">(saltproc.sparger.Sparger attribute)</a>, <a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_room">[1]</a>
-</li>
-      </ul></li>
-      <li><a href="src/saltproc.sparger.html#saltproc.sparger.Sparger.temp_salt">temp_salt (saltproc.sparger.Sparger attribute)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par">test_change_sim_par() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_check_switch_geo_trigger">test_check_switch_geo_trigger() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_convert_nuclide_name_serpent_to_zam">test_convert_nuclide_name_serpent_to_zam() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs">test_copy_pymat_attrs() (in module saltproc.tests.test_materialflow)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile">test_create_iter_matfile() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_nuclide_name_map_zam_to_serpent">test_create_nuclide_name_map_zam_to_serpent() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass">test_get_mass() (in module saltproc.tests.test_materialflow)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name">test_get_nuc_name() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry">test_insert_path_to_geometry() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp">test_read_dep_comp() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info">test_read_depcode_info() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param">test_read_depcode_step_param() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot">test_read_dot() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input">test_read_feeds_from_input() (in module saltproc.tests.test_app)</a>
-</li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta">test_read_k_eds_delta() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input">test_read_main_input() (in module saltproc.tests.test_app)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_plaintext_file">test_read_plaintext_file() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input">test_read_processes_from_input() (in module saltproc.tests.test_app)</a>
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-</li>
-      <li><a href="src/saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements">test_rem_elements() (in module saltproc.tests.test_process)</a>
-
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-        <li><a href="src/saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements">(in module saltproc.tests.test_separator)</a>
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-</li>
-      </ul></li>
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-</li>
-      <li><a href="src/saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing">test_reprocessing() (in module saltproc.tests.test_app)</a>
-</li>
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-</li>
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-</li>
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-</li>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_init_info">test_store_run_init_info() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_step_info">test_store_run_step_info() (in module saltproc.tests.test_simulation)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_switch_to_next_geometry">test_switch_to_next_geometry() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input">test_write_depcode_input() (in module saltproc.tests.test_depcode)</a>
-</li>
-      <li><a href="src/saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file">test_write_mat_file() (in module saltproc.tests.test_depcode)</a>
-</li>
-  </ul></td>
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-
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-      <li><a href="src/saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file">write_mat_file() (saltproc.depcode.Depcode method)</a>
-
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-        <li><a href="src/saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file">(saltproc.depcode.DepcodeSerpent method)</a>
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-  <section id="saltproc">
-<h1>SaltProc<a class="headerlink" href="#saltproc" title="Permalink to this heading">¶</a></h1>
-<p><strong>SaltProc</strong> is a python package for liquid-fueled nuclear reactor depletion
-calculations. It couples directly with the Serpent 2 Monte Carlo depletion
-software to enable online reprocessing system modeling in depletion
-calculation.</p>
-<p><strong>SaltProc</strong> welcomes your contributions. It already relies on many libraries
-in the Scientific Python ecosystem including <a class="reference external" href="http://pyne.io/">pyne</a>, <a class="reference external" href="http://numpy.org">numpy</a>, <a class="reference external" href="http://matplotlib.org">matplotlib</a>,
-<a class="reference external" href="http://networkx.github.io">networkx</a>, and <a class="reference external" href="https://pydotplus.readthedocs.io/">pydotplus</a>.</p>
-<section id="documentation">
-<h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
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-<li class="toctree-l1"><a class="reference internal" href="overview.html">Overview</a></li>
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-<li class="toctree-l1"><a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">How to cite</a></li>
-</ul>
-</div>
-</section>
-<section id="indices-and-tables">
-<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
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-<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
-<li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
-</ul>
-</section>
-<section id="citation">
-<h2>Citation<a class="headerlink" href="#citation" title="Permalink to this heading">¶</a></h2>
-<p>Up-to-date information about citing SaltProc can be found within the <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CITATION.md">citation</a>
-file.</p>
-</section>
-<section id="get-in-touch">
-<h2>Get in touch<a class="headerlink" href="#get-in-touch" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>Please report bugs, suggest feature ideas, and browse the source code <a class="reference external" href="http://github.com/arfc/saltproc">on GitHub</a>.</p></li>
-<li><p>There, new contributors can also find <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/CONTRIBUTING.md">a guide to contributing</a>.</p></li>
-<li><p>Good start point for new contributors is <a class="reference external" href="https://github.com/arfc/saltproc/issues?q=is%3Aopen+is%3Aissue">current open issues</a>.</p></li>
-</ul>
-</section>
-<section id="acknowledgment">
-<h2>Acknowledgment<a class="headerlink" href="#acknowledgment" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc uses <a class="reference external" href="https://github.com/uwescience/shablona">Shablona</a> template which is universal solution for small
-scientific python projects developed at University of Washington <a class="reference external" href="https://escience.washington.edu">eScience Insititute</a>.</p>
-<p><a class="reference external" href="https://docs.openmc.org/en/stable/index.html">OpenMC’s docpages</a> heavily inspired the strucutre and format for SaltProc’s docpages.</p>
-<p>We make our versioned documentation using <a class="reference external" href="https://github.com/Holzhaus/sphinx-multiversion">sphinx-multiversion</a>.</p>
-</section>
-<section id="license">
-<h2>License<a class="headerlink" href="#license" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc is available under the open source <a class="reference external" href="https://raw.githubusercontent.com/arfc/saltproc/master/LICENSE">BSD 3-clause License</a>.</p>
-</section>
-</section>
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-  <section id="installation">
-<h1>Installation<a class="headerlink" href="#installation" title="Permalink to this heading">¶</a></h1>
-<p>SaltProc has the following dependencies:</p>
-<blockquote>
-<div><ol class="arabic simple">
-<li><p><a class="reference external" href="http://python.org">Python</a> (&gt;=3.5)</p></li>
-<li><p><a class="reference external" href="http://montecarlo.vtt.fi">Serpent</a> (&gt;=2.1.31)</p></li>
-<li><p><a class="reference external" href="http://pyne.io">PyNE</a> (&gt;=0.5.11)</p></li>
-<li><p><a class="reference external" href="http://numpy.org">NumPy</a> (&gt;=1.14.0)</p></li>
-<li><p><a class="reference external" href="http://pytables.org">PyTables</a></p></li>
-<li><p><a class="reference external" href="http://networkx.github.io">NetworkX</a></p></li>
-<li><p><a class="reference external" href="https://pydotplus.readthedocs.io/">PyDotPlus</a></p></li>
-<li><p><a class="reference external" href="https://github.com/Julian/jsonschema">jsonschema</a></p></li>
-</ol>
-</div></blockquote>
-<dl class="simple">
-<dt>Optional Depenendencies:</dt><dd><ol class="arabic simple">
-<li><p><a class="reference external" href="https://docs.pytest.org">pytest</a> (for testing)</p></li>
-<li><p><a class="reference external" href="https://www.sphinx-doc.org">sphinx</a> and <a class="reference external" href="https://sphinx-rtd-theme.readthedocs.io">sphinx-rtd-theme</a> (for building documentation)</p></li>
-<li><p><a class="reference external" href="http://matplotlib.org">matplotlib</a></p></li>
-<li><p><a class="reference external" href="http://vitables.org">ViTables</a></p></li>
-</ol>
-</dd>
-</dl>
-<p>Clone the source from the SaltProc repository from <a class="reference external" href="http://github.com/arfc/saltproc">GitHub</a>.</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone git@github.com:arfc/saltproc.git
-</pre></div>
-</div>
-<p>All of the dependencies are readily available through the <a class="reference external" href="https://docs.conda.io/en/latest/">conda package manager</a>.</p>
-<div class="admonition note">
-<p class="admonition-title">Note</p>
-<p>We recommend using the <a class="reference external" href="https://github.com/mamba-org/mamba">mamba</a> CLI tool to install packages quickly. SaltProc has a compltex package dependency structure which can result is long environment solve times in the default <code class="docutils literal notranslate"><span class="pre">conda</span></code> solver. <code class="docutils literal notranslate"><span class="pre">mamba</span></code> is a reimplementation of <code class="docutils literal notranslate"><span class="pre">conda</span></code> in <code class="docutils literal notranslate"><span class="pre">C++</span></code> and we have found it is significantly faster.</p>
-</div>
-<p>You can download the required ones using <code class="docutils literal notranslate"><span class="pre">conda</span></code> on the provided <code class="docutils literal notranslate"><span class="pre">environment.yml</span></code>
-file in the repository:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span> saltproc/
-conda env create -f environment.yml
-</pre></div>
-</div>
-<p>Once all the dependencies are installed, SaltProc can be installed by
-running the following commands from within the cloned directory
-repository (assuming the <cite>saltproc-env</cite> environment is active):</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip install .
-</pre></div>
-</div>
-<p>Please let us know if you run into trouble.</p>
-<section id="cross-section-configuration">
-<h2>Cross Section Configuration<a class="headerlink" href="#cross-section-configuration" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc can use any cross section library that Serpent can. See <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries">this page on the Serpent wiki</a> for information on how to configure the libraries.</p>
-</section>
-<section id="testing">
-<h2>Testing<a class="headerlink" href="#testing" title="Permalink to this heading">¶</a></h2>
-<p>The SaltProc test suite has two types of tests: unit tests and regression tests.
-The unit tests check that the individual functions and classes of the <code class="docutils literal notranslate"><span class="pre">saltproc</span></code>
-module return the correct type of variables and correct values, where applicable.
-The regression tests run a full SaltProc simulation and check the final result
-with a precalculated result.
-The integration tests require the <a class="reference external" href="https://www.oecd-nea.org/dbforms/data/eva/evatapes/jeff_31/JEFF312/">JEFF 3.1.2 cross section library</a> as well
-as neutron induces and spontaneous fission product yield data from JEFF 3.3.
-The publicly available versions of JEFF 3.1.2  cannot be used with Serpent right
-out of the box due to <a class="reference external" href="https://serpent.vtt.fi/mediawiki/index.php/Installing_and_running_Serpent#Setting_up_the_data_libraries">Serpent’s notation for isomeric states</a>. The scripts in
-<code class="docutils literal notranslate"><span class="pre">scripts/xsdata</span></code> download all necessary libraries and perform all the necessary processing on them for use in Serpent 2.
-We recommend using them for your convenience.
-See the <a class="reference external" href="https://github.com/arfc/saltproc/blob/master/scripts/README.md">README</a> for more information.</p>
-<p>To run the tests, execute:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pytest saltproc/
-</pre></div>
-</div>
-<p>from the root directory of SaltProc. If you just want to run the unit tests, execute</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pytest --ignore saltproc/tests/integration_tests saltproc/
-</pre></div>
-</div>
-</section>
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-<li class="toctree-l2"><a class="reference internal" href="#updates">Updates</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#the-future">The Future</a></li>
-</ul>
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-  <section id="overview">
-<h1>Overview<a class="headerlink" href="#overview" title="Permalink to this heading">¶</a></h1>
-<p>SaltProc couples directly with the Monte Carlo neutron transport code Serpent 2
-and enables sophisticated, multi-component online fuel reprocessing system
-modeling. SaltProc is the first open-source tool for liquid-fueled MSR
-depletion simulation with the following capabilities:</p>
-<ul class="simple">
-<li><p>neutron poison removal with user-defined efficiency,</p></li>
-<li><p>make-up mass loss by fresh fuel injection,</p></li>
-<li><p>reactivity control by adjusting fuel feed rate or geometry change,</p></li>
-<li><p>can model any reactor design,</p></li>
-<li><p>potentially, can couple with any depletion tool (i.e., MCNP, SCALE, OpenMC).</p></li>
-</ul>
-<section id="how-saltproc-works">
-<h2>How SaltProc works<a class="headerlink" href="#how-saltproc-works" title="Permalink to this heading">¶</a></h2>
-<p>SaltProc is a driver for Serpent to simulate online fuel salt reprocessing for
-Molten Salt Reactors. It performs following major functions:</p>
-<blockquote>
-<div><ul class="simple">
-<li><p>runs SERPENT</p></li>
-<li><p>parses and stores Serpent output data in HDF5</p></li>
-<li><p>modifies parsed material composition (<cite>reprocesses</cite>)</p></li>
-<li><p>creates Serpent input file</p></li>
-</ul>
-</div></blockquote>
-<p>The code logic flow is the following:</p>
-<blockquote>
-<div><ol class="arabic simple">
-<li><p>Runs Serpent (<cite>saltproc.depcode.run_depcode()</cite>)</p></li>
-<li><p>Parses through the output <cite>*_dep.m</cite> file and creates PyNE Material object
-for each burnable material.</p></li>
-<li><p>Processes Fuel (<cite>saltproc.app.reprocessing()</cite> and <cite>saltproc.refill</cite>):</p></li>
-</ol>
-<blockquote>
-<div><ul class="simple">
-<li><p>Passes fuel composition throughout Processes objects (reprocessing system
-components) to remove poisons with specific efficiency.</p></li>
-<li><p>Adds back fissile and/or fertile material to make-up loss of material.</p></li>
-</ul>
-</div></blockquote>
-<ol class="arabic simple" start="4">
-<li><p>Records data:</p></li>
-</ol>
-<blockquote>
-<div><ul class="simple">
-<li><p>Depleted fuel composition (<cite>materials/fuel/before_reproc</cite> table in HDF5)</p></li>
-<li><p>Reprocessed fuel composition (<cite>materials/fuel/after_reproc</cite> table in
-HDF5)</p></li>
-<li><p>Multiplication factor at the beginning and at the end of depletion step
-(<cite>simulation_parameters/keff_bds</cite>, <cite>simulation_parameters/keff_eds</cite>)</p></li>
-<li><p>Effective Delayed Neutron Fraction (<span class="math notranslate nohighlight">\(\beta_{eff}\)</span>) at the end of
-the depletion step (<cite>simulation_parameters/beta_eff_eds</cite>)</p></li>
-<li><p>Waste and feed streams from each <cite>Process</cite> (<cite>materials/in_out_streams/</cite>)</p></li>
-</ul>
-</div></blockquote>
-<ol class="arabic simple" start="5">
-<li><p>Repeats 1-4.</p></li>
-</ol>
-</div></blockquote>
-</section>
-<section id="updates">
-<h2>Updates<a class="headerlink" href="#updates" title="Permalink to this heading">¶</a></h2>
-<p>March 2021:</p>
-<p>Besides the existing flexibility like fixed removal efficiency definition for
-each target isotope defined in the object input file, Saltproc code now
-comprises <cite>Sparging System package</cite> that calculates removal efficiencies for
-various target isotopes (i.e., Xe, Kr, and H). To enable this feature, use
-the <cite>“self”</cite> command in the input file in the <cite>“efficiency”</cite> object names of
-Sparger and Separator components. Each component can be employed separately.
-An example is given below. In the example, capacity and mass flow rate are in
-<cite>g/s</cite> unit while volume is in <cite>cm</cite><span class="math notranslate nohighlight">\(^3\)</span> unit.</p>
-<dl class="simple">
-<dt>“sparger”: { “capacity”: 9920000,</dt><dd><p>“efficiency”: “self”,
-“mass_flowrate”: 9920000,
-“volume”: 10000000 },</p>
-</dd>
-<dt>“entrainment_separator”: { “capacity”: 9920000,</dt><dd><p>“efficiency”: “self”,
-“mass_flowrate”: 9920000,
-“volume”: 11 }</p>
-</dd>
-</dl>
-</section>
-<section id="the-future">
-<h2>The Future<a class="headerlink" href="#the-future" title="Permalink to this heading">¶</a></h2>
-<p>A number of features will be implemented in SaltProc soon. Support of various
-depletion codes (e.g., OpenMC) will be added.</p>
-<div class="admonition warning">
-<p class="admonition-title">Warning</p>
-<p>SaltProc is a relatively new project and is still under heavy development.
-Although we will make our best effort to maintain compatibility with the
-current API, inevitably the API will change in future versions as SaltProc
-matures.</p>
-</div>
-</section>
-</section>
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-<h1>Release notes for v0.3.0<a class="headerlink" href="#release-notes-for-v0-3-0" title="Permalink to this heading">¶</a></h1>
-<p>This release of SaltProc adds several new features, including a refactor of <code class="docutils literal notranslate"><span class="pre">depcode</span></code>, updated documentation, and installation guides. Make sure you apply <a class="reference external" href="https://ttuki.vtt.fi/serpent/viewtopic.php?f=25&amp;t=3682&amp;start=20#p12675">this bug fix</a> in your Serpent2 code if you haven’t already.</p>
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-<li><p>Adds a script for creating a Serpent2 compatible cross section library</p></li>
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-<h2>Bug Fixes<a class="headerlink" href="#bug-fixes" title="Permalink to this heading">¶</a></h2>
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-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/86">Remove cruft in master</a></p></li>
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/89">Update Geometry file syntax to Serpent 2 standards</a></p></li>
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/75">Update issue and PR templates</a></p></li>
-<li><p><cite>Fix incorrect variable call in ``app.read_dot`</cite> &lt;<a class="reference external" href="https://github.com/arfc/saltproc/pull/63">https://github.com/arfc/saltproc/pull/63</a>&gt;`__</p></li>
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-<h2>Commit list<a class="headerlink" href="#commit-list" title="Permalink to this heading">¶</a></h2>
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-<li><p>Isotope find by &#64;jbae11 in <a class="reference external" href="https://github.com/arfc/saltproc/pull/23">https://github.com/arfc/saltproc/pull/23</a></p></li>
-<li><p>Saltproc capability addition and UI improvement by &#64;jbae11 in <a class="reference external" href="https://github.com/arfc/saltproc/pull/29">https://github.com/arfc/saltproc/pull/29</a></p></li>
-<li><p>Completely refactored and changed after latest Teddy’s release (0.2.0) by &#64;andrewryh in <a class="reference external" href="https://github.com/arfc/saltproc/pull/37">https://github.com/arfc/saltproc/pull/37</a></p></li>
-<li><p>Update README.md only to address #41 by &#64;andrewryh in <a class="reference external" href="https://github.com/arfc/saltproc/pull/45">https://github.com/arfc/saltproc/pull/45</a></p></li>
-<li><p>Bringing SaltProc repository up to date by &#64;andrewryh in <a class="reference external" href="https://github.com/arfc/saltproc/pull/47">https://github.com/arfc/saltproc/pull/47</a></p></li>
-<li><p>Scripts and input files for sensitivity analysis of msbr design by &#64;mehmeturkmen in <a class="reference external" href="https://github.com/arfc/saltproc/pull/48">https://github.com/arfc/saltproc/pull/48</a></p></li>
-<li><p>Saltproc multiple run flexibility by &#64;mehmeturkmen in <a class="reference external" href="https://github.com/arfc/saltproc/pull/49">https://github.com/arfc/saltproc/pull/49</a></p></li>
-<li><p>Adding sparging system to saltproc by &#64;mehmeturkmen in <a class="reference external" href="https://github.com/arfc/saltproc/pull/50">https://github.com/arfc/saltproc/pull/50</a></p></li>
-<li><p>The updated “overview.rst” file for the latest change in Saltproc by &#64;mehmeturkmen in <a class="reference external" href="https://github.com/arfc/saltproc/pull/53">https://github.com/arfc/saltproc/pull/53</a></p></li>
-<li><p>Improved separator using Jiaqi’s new correlation by &#64;mehmeturkmen in <a class="reference external" href="https://github.com/arfc/saltproc/pull/54">https://github.com/arfc/saltproc/pull/54</a></p></li>
-<li><p>Create ci.yml by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/61">https://github.com/arfc/saltproc/pull/61</a></p></li>
-<li><p>Call <code class="docutils literal notranslate"><span class="pre">name</span></code> instead of <code class="docutils literal notranslate"><span class="pre">__string__</span></code> to assign <code class="docutils literal notranslate"><span class="pre">mat_name</span></code> by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/63">https://github.com/arfc/saltproc/pull/63</a></p></li>
-<li><p>Add issue + PR templates by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/66">https://github.com/arfc/saltproc/pull/66</a></p></li>
-<li><p>Update README and Contributing by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/71">https://github.com/arfc/saltproc/pull/71</a></p></li>
-<li><p>Refactor depcode by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/64">https://github.com/arfc/saltproc/pull/64</a></p></li>
-<li><p>2nd attempt: Update issue template formatting. by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/75">https://github.com/arfc/saltproc/pull/75</a></p></li>
-<li><p>Update example and integration test input files to serpent 2 syntax by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/89">https://github.com/arfc/saltproc/pull/89</a></p></li>
-<li><p>Remove cruft files from <code class="docutils literal notranslate"><span class="pre">master</span></code> branch by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/86">https://github.com/arfc/saltproc/pull/86</a></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">doc</span></code> additions, docstring typo fixes, cross section processing scripts by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/90">https://github.com/arfc/saltproc/pull/90</a></p></li>
-<li><p>Patch #90 (pep8 issues, docstring consistency) by &#64;yardasol in <a class="reference external" href="https://github.com/arfc/saltproc/pull/92">https://github.com/arfc/saltproc/pull/92</a></p></li>
-</ul>
-</section>
-<section id="contributors">
-<h2>Contributors<a class="headerlink" href="#contributors" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>&#64;yardasol</p></li>
-<li><p>&#64;mehmeturkmen</p></li>
-<li><p>&#64;andrewryh</p></li>
-<li><p>&#64;jbae11</p></li>
-</ul>
-<p><strong>Full Changelog</strong>: <a class="reference external" href="https://github.com/arfc/saltproc/compare/v0.2.0...v0.3.0">https://github.com/arfc/saltproc/compare/v0.2.0…v0.3.0</a></p>
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-  <section id="release-notes-for-v0-4-0">
-<h1>Release notes for v0.4.0<a class="headerlink" href="#release-notes-for-v0-4-0" title="Permalink to this heading">¶</a></h1>
-<div class="admonition note">
-<p class="admonition-title">Note</p>
-<p>These release notes are currently in production.</p>
-</div>
-<section id="summary">
-<h2>Summary<a class="headerlink" href="#summary" title="Permalink to this heading">¶</a></h2>
-<p>This version of SaltProc refactors the code in preparation for supporting <code class="docutils literal notranslate"><span class="pre">OpenMC</span></code>.</p>
-</section>
-<section id="dependency-changes">
-<h2>Dependency Changes<a class="headerlink" href="#dependency-changes" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>Saltproc now requires the following packages</p>
-<ul>
-<li><p>(new) → <a class="reference external" href="https://github.com/Julian/jsonschema">jsonschema</a></p></li>
-</ul>
-</li>
-</ul>
-</section>
-<section id="new-features">
-<h2>New Features<a class="headerlink" href="#new-features" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/98">Refactor app.py and simulation.py to prepare for OpenMC support</a> by <a class="reference external" href="https://github.com/yardasol">&#64;yardasol</a></p></li>
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/98">New input file format that is checked against a verifiable JSON Schema</a> by <a class="reference external" href="https://github.com/yardasol">&#64;yardasol</a></p></li>
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/115">Release notes in the online docs</a> by <a class="reference external" href="https://github.com/yardasol">&#64;yardasol</a></p></li>
-</ul>
-</section>
-<section id="bug-fixes">
-<h2>Bug Fixes<a class="headerlink" href="#bug-fixes" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p><a class="reference external" href="https://github.com/arfc/saltproc/pull/100">Fix typos in process_j312.bash</a></p></li>
-</ul>
-</section>
-<section id="script-changes">
-<h2>Script Changes<a class="headerlink" href="#script-changes" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>The following scripts have been renamed:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">process_j312.sh</span></code> → <code class="docutils literal notranslate"><span class="pre">process_j312.bash</span></code></p></li>
-</ul>
-</li>
-</ul>
-</section>
-<section id="python-api-changes">
-<h2>Python API Changes<a class="headerlink" href="#python-api-changes" title="Permalink to this heading">¶</a></h2>
-<ul class="simple">
-<li><p>New tests for previously untested functions in <code class="docutils literal notranslate"><span class="pre">simulation.py</span></code>:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">test_check_switch_geo_trigger</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">test_store_after_repr</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">test_store_mat_data</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">test_store_run_init_info</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">test_store_run_step_info</span></code></p></li>
-</ul>
-</li>
-<li><p>The following class methods have been added/(re)moved:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.check_restart()</span></code> → <code class="docutils literal notranslate"><span class="pre">Simulation.check_restart()</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Simulation.switch_to_next_geometry</span></code> → <code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.switch_to_next_geometry</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Simulation.runsim_no_reproc</span></code> → <code class="docutils literal notranslate"><span class="pre">test/integration_tests/test_no_reproc_run.py::runsim_no_reproc</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Simulation.store_run_step_info</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Simulation.store_run_init_info</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">Depcode.switch_to_next_geometry</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">Depcode.read_depcode_info</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">Depcode.read_repcode_step_param</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.sss_meta_zzz</span></code> → <code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.convert_nuclide_name_serpent_to_zam</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.get_tra_or_dec</span></code> → <code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.create_nuclide_name_map_zam_to_serpent</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_template</span></code> → <code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_plaintext_file</span></code></p></li>
-</ul>
-</li>
-<li><p>Updated input file structure:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.depcode_inp</span></code> dictionary</p>
-<ul>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">App.depcode_inp['codename']</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.exec_path</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.template_file</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.neutron_pop</span></code> → <code class="docutils literal notranslate"><span class="pre">App.depcode_inp['npop']</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.active_cycles</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.inactive_cycles</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.geo_file</span></code> → <code class="docutils literal notranslate"><span class="pre">App.depcode_inp['geo_file_paths']</span></code></p></li>
-</ul>
-</li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.simulation_inp</span></code> dictionary:</p>
-<ul>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">App.simulation['sim_name']</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.db_file</span></code> → <code class="docutils literal notranslate"><span class="pre">App.simulation['db_name']</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.restart_flag</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.adjust_geo</span></code></p></li>
-</ul>
-</li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.reactor_inp</span></code> dictionary</p>
-<ul>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">App.reactor_inp['volume']</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">App.reactor_inp['mass_flowrate']</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.power_levels</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">App.depl_hist</span></code> → <code class="docutils literal notranslate"><span class="pre">App.reactor_inp['dep_step_length_cumulative']</span></code></p></li>
-</ul>
-</li>
-</ul>
-</li>
-<li><p>The following class attributes have been added/(re)moved:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">Depcode</span></code> class:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">template_path</span></code> → <code class="docutils literal notranslate"><span class="pre">template_inputfile_path</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">input_path</span></code> → <code class="docutils literal notranslate"><span class="pre">iter_inputfile</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">geo_file</span></code> → <code class="docutils literal notranslate"><span class="pre">geo_files</span></code></p></li>
-</ul>
-</li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Simulation</span></code> class:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">h5_file</span></code> → <code class="docutils literal notranslate"><span class="pre">db_path</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">restart_flag</span></code></p></li>
-<li><p>(new) → <code class="docutils literal notranslate"><span class="pre">adjust_geo</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">iter_matfile</span></code> → (removed)</p></li>
-</ul>
-</li>
-</ul>
-</li>
-<li><p>The signatures for the following class methods have changed to better make use of object data encapsulation:</p>
-<ul>
-<li><p><code class="docutils literal notranslate"><span class="pre">Depcode.read_dep_comp</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Depcode.write_depcode_input</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">Depcode.write_mat_file</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_template</span></code></p></li>
-<li><p><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.create_nuclide_map_serpent_to_zam</span></code></p></li>
-</ul>
-</li>
-</ul>
-</section>
-<section id="contributors">
-<h2>Contributors<a class="headerlink" href="#contributors" title="Permalink to this heading">¶</a></h2>
-<p>The following people contributed code to this release of SaltProc:</p>
-<ul class="simple">
-<li><p><a class="reference external" href="https://github.com/yardasol">&#64;yardasol</a></p></li>
-</ul>
-</section>
-<section id="reviewers">
-<h2>Reviewers<a class="headerlink" href="#reviewers" title="Permalink to this heading">¶</a></h2>
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\ No newline at end of file
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-</ul>
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-</ul>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html">saltproc.separator module</a><ul>
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diff --git a/v0.4.0/src/saltproc.app.html b/v0.4.0/src/saltproc.app.html
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-  <section id="module-saltproc.app">
-<span id="saltproc-app-module"></span><h1>saltproc.app module<a class="headerlink" href="#module-saltproc.app" title="Permalink to this heading">¶</a></h1>
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.parse_arguments">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">parse_arguments</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#parse_arguments"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.parse_arguments" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses arguments from command line.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><ul class="simple">
-<li><p><strong>n</strong> (<em>int</em>) – Number of nodes for use in depletion code simulation.</p></li>
-<li><p><strong>d</strong> (<em>int</em>) – Number of cores for use in depletion code simulation.</p></li>
-<li><p><strong>i</strong> (<em>str</em>) – Path and name of main SaltProc input file (json format).</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_dot">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dot_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_dot" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads directed graph that describes fuel reprocessing system structure
-from <cite>*.dot</cite> file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>dot_file</strong> (<em>str</em>) – Path to <cite>.dot</cite> file with reprocessing system structure.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>mat_name</strong> (<em>str</em>) – Name of burnable material which reprocessing scheme described in <cite>.dot</cite>
-file.</p></li>
-<li><p><strong>paths_list</strong> (<em>list</em>) – List of lists containing all possible paths between <cite>core_outlet</cite> and
-<cite>core_inlet</cite>.</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_feeds_from_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_feeds_from_input</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_feeds_from_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_feeds_from_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">feed</span></code> data from <cite>.json</cite> file with <cite>Materialflow</cite> objects
-description. Then returns dictionary of <cite>Materialflow</cite> objects describing
-fresh fuel feeds.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects with feeds.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties of feed.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_main_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_main_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">main_inp_file</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_main_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_main_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads main SaltProc input file (json format).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>main_inp_file</strong> (<em>str</em>) – Path to SaltProc main input file and name of this file.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.read_processes_from_input">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">read_processes_from_input</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#read_processes_from_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.read_processes_from_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses <code class="docutils literal notranslate"><span class="pre">removal</span></code> data from <cite>.json</cite> file with <cite>Process</cite> objects
-description. Then returns dictionary of <cite>Process</cite> objects describing
-extraction process efficiency for each target chemical element.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>mats</strong> – Dictionary that contains <cite>Process</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Process</cite> object holding extraction process parameters.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to Process</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.refill">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">refill</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extracted_mass</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#refill"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.refill" title="Permalink to this definition">¶</a></dt>
-<dd><p>Makes up material loss in removal processes by adding fresh fuel.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object after performing all removals.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>extracted_mass</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <p>Name of burnable material.
-<code class="docutils literal notranslate"><span class="pre">value</span></code></p>
-<blockquote>
-<div><p>Mass removed as waste in reprocessing function for each material.</p>
-</div></blockquote>
-</p></li>
-<li><p><strong>waste_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Process name.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>refilled_mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object after adding fresh fuel.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.reprocessing">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">reprocessing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#reprocessing"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.reprocessing" title="Permalink to this definition">¶</a></dt>
-<dd><p>Applies reprocessing scheme to burnable materials.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects with burnable material
-data right after irradiation in the core.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul>
-<li><p><strong>waste</strong> (<em>dict of str to Materialflow</em>) –</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Process name.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</li>
-<li><p><strong>extracted_mass</strong> (<em>dict of str to Materialflow</em>) –</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Mass removed as waste in reprocessing function for each material
-(g).</p>
-</dd>
-</dl>
-</li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.app.run">
-<span class="sig-prename descclassname"><span class="pre">saltproc.app.</span></span><span class="sig-name descname"><span class="pre">run</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/app.html#run"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.app.run" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inititializes main run.</p>
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.depcode">
-<span id="saltproc-depcode-module"></span><h1>saltproc.depcode module<a class="headerlink" href="#module-saltproc.depcode" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.depcode.</span></span><span class="sig-name descname"><span class="pre">Depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_inputfile_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_inputfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">ABC</span></code></p>
-<p>Abstract class for interfacing with monte-carlo particle transport
-codes. Contains information about input, output, geometry, and template
-files for running depletion simulations. Also contains neutron
-population, active, and inactive cycles. Contains methods to read template
-and output files, and write new input files for the depletion code.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">codename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exec_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_inputfile_path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_inputfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Depcode object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>codename</strong> (<em>str</em>) – Name of depletion code.</p></li>
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to depletion code executable.</p></li>
-<li><p><strong>template_inputfile_path</strong> (<em>str</em>) – Path to depletion code input file template.</p></li>
-<li><p><strong>iter_inputfile</strong> (<em>str</em>) – Name of depletion code input file for depletion code rerunning.</p></li>
-<li><p><strong>iter_matfile</strong> (<em>str</em>) – Name of iterative, rewritable material file for depletion code
-rerunning. This file is modified during  the simulation.</p></li>
-<li><p><strong>geo_files</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-<li><p><strong>npop</strong> (<em>int</em><em>, </em><em>optional</em>) – Size of neutron population per cycle for Monte Carlo.</p></li>
-<li><p><strong>active_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of active cycles.</p></li>
-<li><p><strong>inactive_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of inactive cycles.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.read_dep_comp">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_dep_comp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.read_dep_comp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.read_dep_comp" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the depleted material data from the depcode simulation
-and returns a dictionary with a <cite>Materialflow</cite> object for each
-burnable material.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – Controls at which moment in the depletion step to read the data.
-If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.read_depcode_info">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_depcode_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.read_depcode_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.read_depcode_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses initial depletion code info data from depletion code
-output and stores it in the <cite>Depcode</cite> object’s <code class="docutils literal notranslate"><span class="pre">sim_info</span></code> attribute.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.read_depcode_step_param">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">read_depcode_step_param</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.read_depcode_step_param"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.read_depcode_step_param" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses data from depletion code output for each step and stores
-it in <cite>Depcode</cite> object’s <code class="docutils literal notranslate"><span class="pre">param</span></code> attributes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.run_depcode">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">run_depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cores</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.run_depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.run_depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs depletion code as a subprocess with the given parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for depletion code run.</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for depletion code run.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.switch_to_next_geometry">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts line with path to next depletion code geometry file at the
-beginning of the depletion code iteration input file.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.write_depcode_input">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_depcode_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.write_depcode_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.write_depcode_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes prepared data into depletion code input file(s).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.Depcode.write_mat_file">
-<em class="property"><span class="pre">abstract</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">write_mat_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dep_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#Depcode.write_mat_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.Depcode.write_mat_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes the iteration input file containing the burnable materials
-composition used in depletion runs and updated after each depletion
-step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>dep_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.depcode.</span></span><span class="sig-name descname"><span class="pre">DepcodeSerpent</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">exec_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sss2'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_inputfile_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'reactor.serpent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_inputfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_reactor'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_mat'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="#saltproc.depcode.Depcode" title="saltproc.depcode.Depcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">Depcode</span></code></a></p>
-<p>Class contains information about input, output, geometry, and
-template files for running Serpent2 depletion simulations.
-Also contains neutrons population, active, and inactive cycles.
-Contains methods to read template and output files,
-write new input files for Serpent2.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">exec_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'sss2'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template_inputfile_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'reactor.serpent'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_inputfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_reactor'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iter_matfile</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'data/saltproc_mat'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geo_files</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">npop</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inactive_cycles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the DepcodeSerpent object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>exec_path</strong> (<em>str</em>) – Path to Serpent2 executable.</p></li>
-<li><p><strong>template_inputfile_path</strong> (<em>str</em>) – Path to user input file for Serpent2.</p></li>
-<li><p><strong>iter_inputfile</strong> (<em>str</em>) – Name of Serpent2 input file for Serpent2 rerunning.</p></li>
-<li><p><strong>iter_matfile</strong> (<em>str</em>) – Name of iterative, rewritable material file for Serpent2
-rerunning. This file is modified during  the simulation.</p></li>
-<li><p><strong>geo_files</strong> (<em>str</em><em> or </em><em>list</em><em>, </em><em>optional</em>) – Path to file that contains the reactor geometry.
-List of <cite>str</cite> if reactivity control by
-switching geometry is <cite>On</cite> or just <cite>str</cite> otherwise.</p></li>
-<li><p><strong>npop</strong> (<em>int</em><em>, </em><em>optional</em>) – Size of neutron population per cycle for Monte Carlo.</p></li>
-<li><p><strong>active_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of active cycles.</p></li>
-<li><p><strong>inactive_cycles</strong> (<em>int</em><em>, </em><em>optional</em>) – Number of inactive cycles.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.change_sim_par">
-<span class="sig-name descname"><span class="pre">change_sim_par</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.change_sim_par"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.change_sim_par" title="Permalink to this definition">¶</a></dt>
-<dd><p>Finds simulation parameters (neutron population, cycles) in the
-Serpent2 template file and change them to the parameters from the
-SaltProc input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s Serpent2 template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>input_data</strong> – List of strings containing Serpent2 input file with new
-simulation parameters.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.convert_nuclide_name_serpent_to_zam">
-<span class="sig-name descname"><span class="pre">convert_nuclide_name_serpent_to_zam</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.convert_nuclide_name_serpent_to_zam"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.convert_nuclide_name_serpent_to_zam" title="Permalink to this definition">¶</a></dt>
-<dd><p>Checks Serpent2-specific meta stable-flag for zzaaam. For instance,
-47310 instead of 471101 for <cite>Ag-110m1</cite>. Metastable isotopes represented
-with <cite>aaa</cite> started with <code class="docutils literal notranslate"><span class="pre">3</span></code>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Name of nuclide in Serpent2 form. For instance, <cite>47310</cite>.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>nuc_zzaam</strong> – Name of nuclide in <cite>zzaaam</cite> form (<cite>471101</cite>).</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>int</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.create_iter_matfile">
-<span class="sig-name descname"><span class="pre">create_iter_matfile</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.create_iter_matfile"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.create_iter_matfile" title="Permalink to this definition">¶</a></dt>
-<dd><p>Finds <code class="docutils literal notranslate"><span class="pre">include</span></code> line with path to material file, copies content of
-this file to iteration material file, changes path in <code class="docutils literal notranslate"><span class="pre">include</span></code> line
-to newly created iteration material file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>input_data</strong> – List of strings containing modified user template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.create_nuclide_name_map_zam_to_serpent">
-<span class="sig-name descname"><span class="pre">create_nuclide_name_map_zam_to_serpent</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.create_nuclide_name_map_zam_to_serpent"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.create_nuclide_name_map_zam_to_serpent" title="Permalink to this definition">¶</a></dt>
-<dd><p>Create a map that accepts nuclide names in <cite>zzaaam</cite> format and
-returns the Serpent2 nuclide code format. Uses Serpent2 <cite>*.out</cite> file
-with list of all nuclides in simulation.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>nuclide_map</strong> – Contains mapping for nuclide names from <cite>zzaaam</cite> to Serpent2
-format imported from Serpent2 ouput file:</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The key is nuclide name in <cite>zzaaam</cite> format. For example,
-<cite>922350</cite> or <cite>982510</cite>.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Serpent2-oriented name. For instance, 92235.09c for transport
-isotope or 982510 for decay only isotope).</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.get_nuc_name">
-<span class="sig-name descname"><span class="pre">get_nuc_name</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nuc_code</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.get_nuc_name"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.get_nuc_name" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns nuclide name in human-readable notation: chemical symbol
-(one or two characters), dash, and the atomic weight. Lastly, if the
-nuclide is in metastable state, the letter <cite>m</cite> is concatenated with
-number of excited state. For example, <cite>Am-242m1</cite>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>nuc_code</strong> (<em>str</em>) – Name of nuclide in Serpent2 form. For instance, <cite>Am-242m</cite>.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><ul class="simple">
-<li><p><strong>nuc_name</strong> (<em>str</em>) – Name of nuclide in human-readable notation (<cite>Am-242m1</cite>).</p></li>
-<li><p><strong>nuc_zzaaam</strong> (<em>str</em>) – Name of nuclide in <cite>zzaaam</cite> form (<cite>952421</cite>).</p></li>
-</ul>
-</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.insert_path_to_geometry">
-<span class="sig-name descname"><span class="pre">insert_path_to_geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.insert_path_to_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts <code class="docutils literal notranslate"><span class="pre">include</span> <span class="pre">&lt;first_geometry_file&gt;</span></code> line on the 6th line of
-Serpent2 input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user’s template file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>template_data</strong> – List of strings containing modified path to geometry
-in user’s template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_dep_comp">
-<span class="sig-name descname"><span class="pre">read_dep_comp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">read_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_dep_comp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_dep_comp" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the Serpent2 <cite>*_dep.m</cite> file and returns a dictionary with
-a <cite>Materialflow</cite> object for each burnable material.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>read_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – Controls at which moment in the depletion step to read the data.
-If <cite>True</cite>, the function reads data at the end of the
-depletion step. Otherwise, the function reads data at the
-beginning of the depletion step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>mats</strong> – Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of str to Materialflow</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_depcode_info">
-<span class="sig-name descname"><span class="pre">read_depcode_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_depcode_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_depcode_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses initial simulation info data from Serpent2 output and stores
-it in the <cite>DepcodeSerpent</cite> object’s <code class="docutils literal notranslate"><span class="pre">sim_info</span></code> attributes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_depcode_step_param">
-<span class="sig-name descname"><span class="pre">read_depcode_step_param</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_depcode_step_param"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_depcode_step_param" title="Permalink to this definition">¶</a></dt>
-<dd><p>Parses data from Serpent2 output for each step and stores it in
-<cite>DepcodeSerpent</cite> object’s <code class="docutils literal notranslate"><span class="pre">param</span></code> attributes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.read_plaintext_file">
-<span class="sig-name descname"><span class="pre">read_plaintext_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">file_path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.read_plaintext_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.read_plaintext_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads the content of a plaintext file for use by other methods.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>file_path</strong> (<em>str</em>) – Path to file.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>file_data</strong> – List of strings containing file lines.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.replace_burnup_parameters">
-<span class="sig-name descname"><span class="pre">replace_burnup_parameters</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">template_data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">current_depstep_idx</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.replace_burnup_parameters"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds or replaces the <code class="docutils literal notranslate"><span class="pre">set</span> <span class="pre">power</span> <span class="pre">P</span> <span class="pre">dep</span> <span class="pre">daystep</span> <span class="pre">DEPSTEP</span></code> line in
-the Serpent2 input file. This line defines depletion history and power
-levels with respect to the depletion step in the single run and
-activates depletion calculation mode.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>template_data</strong> (<em>list</em>) – List of strings parsed from user template file.</p></li>
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>current_depstep_idx</strong> (<em>int</em>) – Current depletion step.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>template_data</strong> – List of strings containing modified in this function template file.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>list</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.run_depcode">
-<span class="sig-name descname"><span class="pre">run_depcode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cores</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodes</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.run_depcode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.run_depcode" title="Permalink to this definition">¶</a></dt>
-<dd><p>Runs Serpent2 as a subprocess with the given parameters.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for Serpent2 run (<cite>-omp</cite> flag in Serpent2).</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for Serpent2 run (<cite>-mpi</cite> flag in Serpent2).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.switch_to_next_geometry">
-<span class="sig-name descname"><span class="pre">switch_to_next_geometry</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.switch_to_next_geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.switch_to_next_geometry" title="Permalink to this definition">¶</a></dt>
-<dd><p>Inserts line with path to next Serpent geometry file at the
-beginning of the Serpent iteration input file.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.write_depcode_input">
-<span class="sig-name descname"><span class="pre">write_depcode_input</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reactor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.write_depcode_input"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.write_depcode_input" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes prepared data into the depletion code input file.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>reactor</strong> (<a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor" title="saltproc.reactor.Reactor"><em>Reactor</em></a>) – Contains information about power load curve and cumulative
-depletion time for the integration test.</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-<li><p><strong>restart</strong> (<em>bool</em>) – Is the current simulation restarted?</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.depcode.DepcodeSerpent.write_mat_file">
-<span class="sig-name descname"><span class="pre">write_mat_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dep_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_end_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/depcode.html#DepcodeSerpent.write_mat_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.depcode.DepcodeSerpent.write_mat_file" title="Permalink to this definition">¶</a></dt>
-<dd><p>Writes the iteration input file containing the burnable materials
-composition used in Serpent2 runs and updated after each depletion
-step.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>dep_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_end_time</strong> (<em>float</em>) – Current time at the end of the depletion step (d).</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="saltproc-package">
-<h1>saltproc package<a class="headerlink" href="#saltproc-package" title="Permalink to this heading">¶</a></h1>
-<section id="subpackages">
-<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.html">saltproc.tests package</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.html#submodules">Submodules</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_app.html">saltproc.tests.test_app module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot"><code class="docutils literal notranslate"><span class="pre">test_read_dot()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input"><code class="docutils literal notranslate"><span class="pre">test_read_main_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_processes_from_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill"><code class="docutils literal notranslate"><span class="pre">test_refill()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing"><code class="docutils literal notranslate"><span class="pre">test_reprocessing()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_depcode.html">saltproc.tests.test_depcode module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par"><code class="docutils literal notranslate"><span class="pre">test_change_sim_par()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_convert_nuclide_name_serpent_to_zam"><code class="docutils literal notranslate"><span class="pre">test_convert_nuclide_name_serpent_to_zam()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">test_create_iter_matfile()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_nuclide_name_map_zam_to_serpent"><code class="docutils literal notranslate"><span class="pre">test_create_nuclide_name_map_zam_to_serpent()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name"><code class="docutils literal notranslate"><span class="pre">test_get_nuc_name()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">test_insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp"><code class="docutils literal notranslate"><span class="pre">test_read_dep_comp()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_info()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_plaintext_file"><code class="docutils literal notranslate"><span class="pre">test_read_plaintext_file()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_replace_burnup_parameters"><code class="docutils literal notranslate"><span class="pre">test_replace_burnup_parameters()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">test_switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_depcode_input"><code class="docutils literal notranslate"><span class="pre">test_write_depcode_input()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_write_mat_file"><code class="docutils literal notranslate"><span class="pre">test_write_mat_file()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_materialflow.html">saltproc.tests.test_materialflow module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">test_copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_get_mass"><code class="docutils literal notranslate"><span class="pre">test_get_mass()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_materialflow.html#saltproc.tests.test_materialflow.test_scale_matflow"><code class="docutils literal notranslate"><span class="pre">test_scale_matflow()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_process.html">saltproc.tests.test_process module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_process.html#saltproc.tests.test_process.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_separator.html">saltproc.tests.test_separator module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_separator.html#saltproc.tests.test_separator.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_simulation.html">saltproc.tests.test_simulation module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_check_switch_geo_trigger"><code class="docutils literal notranslate"><span class="pre">test_check_switch_geo_trigger()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_read_k_eds_delta"><code class="docutils literal notranslate"><span class="pre">test_read_k_eds_delta()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_after_repr"><code class="docutils literal notranslate"><span class="pre">test_store_after_repr()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_mat_data"><code class="docutils literal notranslate"><span class="pre">test_store_mat_data()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_init_info"><code class="docutils literal notranslate"><span class="pre">test_store_run_init_info()</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_simulation.html#saltproc.tests.test_simulation.test_store_run_step_info"><code class="docutils literal notranslate"><span class="pre">test_store_run_step_info()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.tests.test_sparger.html">saltproc.tests.test_sparger module</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="saltproc.tests.test_sparger.html#saltproc.tests.test_sparger.test_rem_elements"><code class="docutils literal notranslate"><span class="pre">test_rem_elements()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.html#module-saltproc.tests">Module contents</a></li>
-</ul>
-</li>
-</ul>
-</div>
-</section>
-<section id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.app.html">saltproc.app module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.parse_arguments"><code class="docutils literal notranslate"><span class="pre">parse_arguments()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_dot"><code class="docutils literal notranslate"><span class="pre">read_dot()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_main_input"><code class="docutils literal notranslate"><span class="pre">read_main_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">read_processes_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.refill"><code class="docutils literal notranslate"><span class="pre">refill()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.reprocessing"><code class="docutils literal notranslate"><span class="pre">reprocessing()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.app.html#saltproc.app.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.depcode.html">saltproc.depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode"><code class="docutils literal notranslate"><span class="pre">Depcode</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.__init__"><code class="docutils literal notranslate"><span class="pre">Depcode.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.read_dep_comp"><code class="docutils literal notranslate"><span class="pre">Depcode.read_dep_comp()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_info"><code class="docutils literal notranslate"><span class="pre">Depcode.read_depcode_info()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">Depcode.read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.run_depcode"><code class="docutils literal notranslate"><span class="pre">Depcode.run_depcode()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">Depcode.switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.write_depcode_input"><code class="docutils literal notranslate"><span class="pre">Depcode.write_depcode_input()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.Depcode.write_mat_file"><code class="docutils literal notranslate"><span class="pre">Depcode.write_mat_file()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.__init__"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.change_sim_par"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.change_sim_par()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.convert_nuclide_name_serpent_to_zam"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.convert_nuclide_name_serpent_to_zam()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.create_iter_matfile()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.create_nuclide_name_map_zam_to_serpent"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.create_nuclide_name_map_zam_to_serpent()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.get_nuc_name"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.get_nuc_name()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_dep_comp"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_dep_comp()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_info"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_info()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_depcode_step_param()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.read_plaintext_file"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.read_plaintext_file()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.replace_burnup_parameters"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.replace_burnup_parameters()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.run_depcode"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.run_depcode()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.switch_to_next_geometry"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.switch_to_next_geometry()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_depcode_input"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.write_depcode_input()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.depcode.html#saltproc.depcode.DepcodeSerpent.write_mat_file"><code class="docutils literal notranslate"><span class="pre">DepcodeSerpent.write_mat_file()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.materialflow.html">saltproc.materialflow module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow"><code class="docutils literal notranslate"><span class="pre">Materialflow</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__add__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__add__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__deepcopy__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__deepcopy__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__eq__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__eq__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__init__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.__rmul__"><code class="docutils literal notranslate"><span class="pre">Materialflow.__rmul__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.copy_pymat_attrs"><code class="docutils literal notranslate"><span class="pre">Materialflow.copy_pymat_attrs()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.get_mass"><code class="docutils literal notranslate"><span class="pre">Materialflow.get_mass()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.print_attr"><code class="docutils literal notranslate"><span class="pre">Materialflow.print_attr()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.materialflow.html#saltproc.materialflow.Materialflow.scale_matflow"><code class="docutils literal notranslate"><span class="pre">Materialflow.scale_matflow()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.process.html">saltproc.process module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process"><code class="docutils literal notranslate"><span class="pre">Process</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.__init__"><code class="docutils literal notranslate"><span class="pre">Process.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Process.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.check_mass_conservation"><code class="docutils literal notranslate"><span class="pre">Process.check_mass_conservation()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.process.html#saltproc.process.Process.rem_elements"><code class="docutils literal notranslate"><span class="pre">Process.rem_elements()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.reactor.html">saltproc.reactor module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor"><code class="docutils literal notranslate"><span class="pre">Reactor</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.reactor.html#saltproc.reactor.Reactor.__init__"><code class="docutils literal notranslate"><span class="pre">Reactor.__init__()</span></code></a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.separator.html">saltproc.separator module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator"><code class="docutils literal notranslate"><span class="pre">Separator</span></code></a><ul>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_salt"><code class="docutils literal notranslate"><span class="pre">Separator.q_salt</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.q_he"><code class="docutils literal notranslate"><span class="pre">Separator.q_he</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.do"><code class="docutils literal notranslate"><span class="pre">Separator.do</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.dp"><code class="docutils literal notranslate"><span class="pre">Separator.dp</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.db"><code class="docutils literal notranslate"><span class="pre">Separator.db</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.deltap"><code class="docutils literal notranslate"><span class="pre">Separator.deltap</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.temp_room"><code class="docutils literal notranslate"><span class="pre">Separator.temp_room</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.k"><code class="docutils literal notranslate"><span class="pre">Separator.k</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.eff"><code class="docutils literal notranslate"><span class="pre">Separator.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.description"><code class="docutils literal notranslate"><span class="pre">Separator.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Separator.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.separator.html#saltproc.separator.Separator.__init__"><code class="docutils literal notranslate"><span class="pre">Separator.__init__()</span></code></a></li>
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-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.calc_rem_efficiency"><code class="docutils literal notranslate"><span class="pre">Sparger.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#saltproc.sparger.Sparger.__init__"><code class="docutils literal notranslate"><span class="pre">Sparger.__init__()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id0"><code class="docutils literal notranslate"><span class="pre">Sparger.calc_rem_efficiency()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id1"><code class="docutils literal notranslate"><span class="pre">Sparger.description()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id2"><code class="docutils literal notranslate"><span class="pre">Sparger.diffusivity</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id3"><code class="docutils literal notranslate"><span class="pre">Sparger.eff()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id4"><code class="docutils literal notranslate"><span class="pre">Sparger.eps()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id5"><code class="docutils literal notranslate"><span class="pre">Sparger.exp_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id6"><code class="docutils literal notranslate"><span class="pre">Sparger.gas_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id7"><code class="docutils literal notranslate"><span class="pre">Sparger.h_const</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id8"><code class="docutils literal notranslate"><span class="pre">Sparger.sherwood()</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="saltproc.sparger.html#id9"><code class="docutils literal notranslate"><span class="pre">Sparger.temp_room</span></code></a></li>
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-  <section id="module-saltproc.materialflow">
-<span id="saltproc-materialflow-module"></span><h1>saltproc.materialflow module<a class="headerlink" href="#module-saltproc.materialflow" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.materialflow.</span></span><span class="sig-name descname"><span class="pre">Materialflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Material</span></code></p>
-<p>Class contains information about burnable material flow. Based on PyNE
-Material.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__add__">
-<span class="sig-name descname"><span class="pre">__add__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__add__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__add__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python adding operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>x</strong> (<em>obj</em>) – Materialflow object #1.</p></li>
-<li><p><strong>y</strong> (<em>obj</em>) – Materialflow object #2.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow which is a sum of isotope masses from <cite>x</cite> and <cite>y</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__deepcopy__">
-<span class="sig-name descname"><span class="pre">__deepcopy__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">memo</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__deepcopy__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__deepcopy__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Return a deep copy of compound object <cite>self</cite>.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>self</strong> (<em>obj</em>) – Compound object.</p></li>
-<li><p><strong>memo</strong> (<em>dict</em><em>, </em><em>optional</em>) – Id-to-object correspondence to control for recursion.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>New compound object copied from <cite>self</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__eq__">
-<span class="sig-name descname"><span class="pre">__eq__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">other</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__eq__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__eq__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python <code class="docutils literal notranslate"><span class="pre">=</span></code> operation to compare two Materialflow
-objects. Compares objects total mass, density, atoms_per_molecule,
-temperature, mass flowrate, and masses of important isotopes:
-uranium-235 and uranium-238.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>other</strong> (<em>obj</em>) – Materialflow object to compare with.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Are the objects equal?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">comp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">density</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">atoms_per_molecule</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">-1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">metadata</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vol</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">void_frac</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">burnup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>PyNE.Material</strong> (<em>class</em>) – PyNE Material parent class containing nuclide vector, density,
-mass, atoms_per_molecule, metadata</p></li>
-<li><p><strong>temp</strong> (<em>float</em>) – temperature of the material flow (K)</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>void_frac</strong> (<em>float</em>) – void fraction in the material (%)</p></li>
-<li><p><strong>burnup</strong> (<em>float</em>) – material burnup at the end of depletion step [MWd/kgU]</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.__rmul__">
-<span class="sig-name descname"><span class="pre">__rmul__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scaling_factor</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.__rmul__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.__rmul__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides Python multiplication operation for Materialflow objects.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>scaling_factor</strong> (<em>float</em><em> or </em><em>int</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Materialflow object which has mass of each isotope and
-mass_flowrate scaled by <cite>other</cite>.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>obj</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.copy_pymat_attrs">
-<span class="sig-name descname"><span class="pre">copy_pymat_attrs</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">src</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.copy_pymat_attrs"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.copy_pymat_attrs" title="Permalink to this definition">¶</a></dt>
-<dd><p>Copies PyNE attributites from source object (<cite>src</cite>) to target
-object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>src</strong> (<em>obj</em>) – Materialflow object to copy attributes from.</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.get_mass">
-<span class="sig-name descname"><span class="pre">get_mass</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.get_mass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.get_mass" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns total mass of the material descibed in Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p>The mass of the object.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.print_attr">
-<span class="sig-name descname"><span class="pre">print_attr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.print_attr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.print_attr" title="Permalink to this definition">¶</a></dt>
-<dd><p>Prints various attributes of Materialflow object.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.materialflow.Materialflow.scale_matflow">
-<span class="sig-name descname"><span class="pre">scale_matflow</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">f</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/materialflow.html#Materialflow.scale_matflow"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.materialflow.Materialflow.scale_matflow" title="Permalink to this definition">¶</a></dt>
-<dd><p>Returns nuclide vector dictionary, obtained from object attrs and
-then scaled by factor.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>f</strong> (<em>float</em>) – Scaling factor.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><p><strong>new_mat_comp</strong> – Materialflow nuclide component dictionary of relative mass.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>The keys are preserved from PyNE Material (integers
-representing nuclides in id-form).</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Each nuclide’s mass fraction, multiplied by
-factor f.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>dict of int to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.process">
-<span id="saltproc-process-module"></span><h1>saltproc.process module<a class="headerlink" href="#module-saltproc.process" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.process.Process">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.process.</span></span><span class="sig-name descname"><span class="pre">Process</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class describes process which must be applied to Materialflow to change
-burnable material composition.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Process object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – mass flow rate of the material flow (g/s)</p></li>
-<li><p><strong>capacity</strong> (<em>float</em>) – maximum mass flow rate of the material flow which current process
-can handle (g/s)</p></li>
-<li><p><strong>volume</strong> (<em>float</em>) – total volume of the current facility (<span class="math notranslate nohighlight">\(cm^3\)</span>)</p></li>
-<li><p><strong>efficiency</strong> (<em>dict</em><em> of </em><em>str to float</em>) – <dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>element name for removal (not isotope)</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficency for the isotope (weight fraction)</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>optional_parameter</strong> (<em>float</em>) – user can define any castom parameter in the input file describing
-processes and use it in efficiency function</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Based on data from json file with Processes description calculate
-value (float) of the removal efficiency. If it was str describing
-efficiecny as a function (eps(x,m,t,P,L)) then calculating value. If it
-constant (float in processes.json) then just keep it as is.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.check_mass_conservation">
-<span class="sig-name descname"><span class="pre">check_mass_conservation</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.check_mass_conservation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.check_mass_conservation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Checking that Process.outflow + Process.waste_stream is equal
-Process.inflow and the total mass is being conserved. Returns <cite>True</cite> if
-the mass conserved or <cite>False</cite> if its mismatched.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.process.Process.rem_elements">
-<span class="sig-name descname"><span class="pre">rem_elements</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">inflow</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/process.html#Process.rem_elements"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.process.Process.rem_elements" title="Permalink to this definition">¶</a></dt>
-<dd><p>Updates Materialflow object <cite>inflow</cite> after removal target isotopes
-with specific efficiency in single component of fuel reprocessing
-system and returns waste stream Materialflow object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>inflow</strong> (<em>Materialflow obj</em>) – Target material stream to remove poisons from.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Waste stream from the reprocessing system component.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>Materialflow object</p>
-</dd>
-</dl>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
-
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-          </div>
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-  <section id="module-saltproc.reactor">
-<span id="saltproc-reactor-module"></span><h1>saltproc.reactor module<a class="headerlink" href="#module-saltproc.reactor" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.reactor.</span></span><span class="sig-name descname"><span class="pre">Reactor</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step_length_cumulative</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class contains information about current state of the reactor.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.reactor.Reactor.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volume</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mass_flowrate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power_levels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[0.0]</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step_length_cumulative</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">[1]</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/reactor.html#Reactor.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.reactor.Reactor.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the class.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>volume</strong> (<em>float</em>) – Total volume of the reactor core (<span class="math notranslate nohighlight">\(cm^3\)</span>).</p></li>
-<li><p><strong>mass_flowrate</strong> (<em>float</em>) – Total mass flowrate through reactor core (g/s).</p></li>
-<li><p><strong>power_levels</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Normalized power level for each depletion step (W).</p></li>
-<li><p><strong>dep_step_length_cumulative</strong> (array [<span class="math notranslate nohighlight">\(N_{steps}\)</span> x1]) – Cumulative depletion time (d).</p></li>
-</ul>
-</dd>
-</dl>
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diff --git a/v0.4.0/src/saltproc.separator.html b/v0.4.0/src/saltproc.separator.html
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-  <section id="module-saltproc.separator">
-<span id="saltproc-separator-module"></span><h1>saltproc.separator module<a class="headerlink" href="#module-saltproc.separator" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.separator.Separator">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.separator.</span></span><span class="sig-name descname"><span class="pre">Separator</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Class evaluates gas removal efficiency in separator (bubble separator).</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.separator.Separator.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.do">
-<span class="sig-name descname"><span class="pre">do</span></span><a class="headerlink" href="#saltproc.separator.Separator.do" title="Permalink to this definition">¶</a></dt>
-<dd><p>gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.separator.Separator.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.separator.Separator.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.deltap">
-<span class="sig-name descname"><span class="pre">deltap</span></span><a class="headerlink" href="#saltproc.separator.Separator.deltap" title="Permalink to this definition">¶</a></dt>
-<dd><p>Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.separator.Separator.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.k">
-<span class="sig-name descname"><span class="pre">k</span></span><a class="headerlink" href="#saltproc.separator.Separator.k" title="Permalink to this definition">¶</a></dt>
-<dd><p>Slope of the initial swirling (use 1 for this).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency from Jiaqi’s correlation. [1]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.separator.Separator.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.02</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">deltap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">400000.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.separator.Separator.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Separator object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>do</strong> (<em>float</em>) – gas outlet diameter (m)
-Ranging from 1~3cm in our simulations
-Default: 0.02</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>deltap</strong> (<em>float</em>) – Pressure difference between the inlet and the gas outlet (Pa)
-(from 2e5 to 5e5 Pa)
-Default: 4e5</p></li>
-<li><p><strong>temp_room</strong> (<em>real</em>) – room temperature (Kelvin)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>jl</strong> (<em>float</em>) – liquid superficial velocity (m/s)</p></li>
-<li><p><strong>alpha</strong> (<em>float</em>) – void fraction</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides the existing method in Process class to provide
-efficiency values of target isotopes calculated in eff() function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in
-sensitivity analysis</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>pltdict</strong> – contains instances’ information</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to str</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/separator.html#Separator.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas/bubble separation efficiency from Jiaqi’s correlation</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary that contains removal efficiency of each target
-element.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id3">
-<span class="sig-name descname"><span class="pre">k</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">1.0</span></em><a class="headerlink" href="#id3" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
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-
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-  <section id="module-saltproc.simulation">
-<span id="saltproc-simulation-module"></span><h1>saltproc.simulation module<a class="headerlink" href="#module-saltproc.simulation" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.simulation.</span></span><span class="sig-name descname"><span class="pre">Simulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'depcode'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">core_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">adjust_geo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression_params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
-<p>Class for handling simulation information. Contains information
-for running simulation wiht parallelism. Also contains the simulation
-name, a <cite>Depcode</cite> object, and the filename for the simulation database.
-Contains methods to store simulation metadata and depletion results in
-a database, predict reactor criticality at next depletion step, and
-switch simulation geometry.</p>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sim_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'default'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sim_depcode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'depcode'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">core_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">node_number</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'db_saltproc.h5'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">restart_flag</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">adjust_geo</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compression_params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">Filters(complevel=9,</span> <span class="pre">complib='blosc',</span> <span class="pre">shuffle=True,</span> <span class="pre">bitshuffle=False,</span> <span class="pre">fletcher32=True,</span> <span class="pre">least_significant_digit=None)</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Simulation object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>sim_name</strong> (<em>str</em>) – Name to identify the simulation. May contain information such as
-the number of a reference case, a paper name, or some other
-specific information identify the simulation.</p></li>
-<li><p><strong>sim_depcode</strong> (<cite>Depcode</cite> object) – An instance of one of the <cite>Depcode</cite> child classes</p></li>
-<li><p><strong>cores</strong> (<em>int</em>) – Number of cores to use for depletion code run (<cite>-omp</cite> flag in
-Serpent).</p></li>
-<li><p><strong>nodes</strong> (<em>int</em>) – Number of nodes to use for depletion code run (<cite>-mpi</cite> flag in
-Serpent).</p></li>
-<li><p><strong>db_path</strong> (<em>str</em>) – Path of HDF5 database that stores simulation information and
-data.</p></li>
-<li><p><strong>restart_flag</strong> (<em>bool</em>) – This value determines our initial condition. If <cite>True</cite>, then
-then we run the simulation starting from the inital material
-composition in the material input file inside our <cite>depcode</cite>
-object. If <cite>False</cite>, then we runthe simulation starting from
-the final material composition resulting within the <cite>.h5</cite>
-database.</p></li>
-<li><p><strong>adjust_geo</strong> (<em>bool</em>) – This value determines if we switch reactor geometry when keff
-drops below 1.0</p></li>
-<li><p><strong>compression_params</strong> (<em>Pytables filter object</em>) – Compression parameters for HDF5 database.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.check_restart">
-<span class="sig-name descname"><span class="pre">check_restart</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.check_restart"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.check_restart" title="Permalink to this definition">¶</a></dt>
-<dd><p>If the user set <cite>restart_flag</cite>
-for <cite>False</cite> clean out iteration files and database from previous run.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>restart_flag</strong> (<em>bool</em>) – Is the current simulation restarted?</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.check_switch_geo_trigger">
-<span class="sig-name descname"><span class="pre">check_switch_geo_trigger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_time</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">switch_time</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.check_switch_geo_trigger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.check_switch_geo_trigger" title="Permalink to this definition">¶</a></dt>
-<dd><p>Compares the current timestep with the user defined times
-at which to switch reactor geometry, and returns <cite>True</cite> if there
-is a match.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>current_timestep</strong> (<em>int</em>) – Current time after depletion started.</p></li>
-<li><p><strong>switch_time</strong> (<em>list</em>) – List containing moments in time when geometry have to be switched.</p></li>
-</ul>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>is the next geometry must be used at the next step?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.read_k_eds_delta">
-<span class="sig-name descname"><span class="pre">read_k_eds_delta</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">current_timestep</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.read_k_eds_delta"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.read_k_eds_delta" title="Permalink to this definition">¶</a></dt>
-<dd><p>Reads from database delta between previous and current <cite>keff</cite> at the
-end of depletion step and returns <cite>True</cite> if predicted <cite>keff</cite> at the
-next depletion step drops below 1.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>current_timestep</strong> (<em>int</em>) – Number of current depletion time step.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>Is the reactor will become subcritical at the next step?</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>bool</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_after_repr">
-<span class="sig-name descname"><span class="pre">store_after_repr</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">after_mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waste_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_after_repr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_after_repr" title="Permalink to this definition">¶</a></dt>
-<dd><p>Add data for waste streams [grams per depletion step] of each
-process to the HDF5 database after reprocessing.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>after_mats</strong> (<cite>Materialflow</cite>) – <cite>Materialflow</cite> object representing a material stream after
-performing reprocessing.</p></li>
-<li><p><strong>waste_dict</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that maps <cite>Process</cite> objects to waste <cite>Materialflow</cite>
-objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p><cite>Process</cite> name (<cite>str</cite>)</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object containing waste streams data.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion time step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_mat_data">
-<span class="sig-name descname"><span class="pre">store_mat_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mats</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dep_step</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">store_at_end</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_mat_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_mat_data" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initialize the HDF5/Pytables database (if it doesn’t exist) or
-append the following data at the current depletion step to the
-database: burnable material composition, mass, density, volume,
-temperature, burnup,  mass_flowrate, void_fraction.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>mats</strong> (<em>dict</em><em> of </em><em>str to Materialflow</em>) – <p>Dictionary that contains <cite>Materialflow</cite> objects.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of burnable material.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p><cite>Materialflow</cite> object holding composition and properties.</p>
-</dd>
-</dl>
-</p></li>
-<li><p><strong>dep_step</strong> (<em>int</em>) – Current depletion step.</p></li>
-<li><p><strong>store_at_end</strong> (<em>bool</em><em>, </em><em>optional</em>) – Controls at which moment in the depletion step to store data from.
-If <cite>True</cite>, the function stores data from the end of the
-depletion step. Otherwise, the function stores data from the
-beginning of the depletion step.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_init_info">
-<span class="sig-name descname"><span class="pre">store_run_init_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_init_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_init_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds the following depletion code and SaltProc simulation parameters
-to the database:
-neutron population, active cycles, inactive cycles, depletion code
-version simulation title, depetion code input file path, depletion code
-working directory, cross section data path, # of OMP threads, # of MPI
-tasks, memory optimization mode (Serpent), depletion timestep size.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.simulation.Simulation.store_run_step_info">
-<span class="sig-name descname"><span class="pre">store_run_step_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/simulation.html#Simulation.store_run_step_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.simulation.Simulation.store_run_step_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>Adds the following depletion code and SaltProc simulation
-data at the current depletion step to the database:
-execution time, memory usage, multiplication factor, breeding ratio,
-delayed neutron precursor data, fission mass, cumulative depletion
-time, power level.</p>
-</dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="module-saltproc.sparger">
-<span id="saltproc-sparger-module"></span><h1>saltproc.sparger module<a class="headerlink" href="#module-saltproc.sparger" title="Permalink to this heading">¶</a></h1>
-<dl class="py class">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">saltproc.sparger.</span></span><span class="sig-name descname"><span class="pre">Sparger</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference internal" href="saltproc.process.html#saltproc.process.Process" title="saltproc.process.Process"><code class="xref py py-class docutils literal notranslate"><span class="pre">Process</span></code></a></p>
-<p>Class evaluates gas removal efficiency in sparger (bubble generator).</p>
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.h_const">
-<span class="sig-name descname"><span class="pre">h_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.h_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>Henry’s law constant.</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.gas_const">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.gas_const" title="Permalink to this definition">¶</a></dt>
-<dd><p>universal gas constant (Pa.m^3/mol-K)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.diffusivity">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.diffusivity" title="Permalink to this definition">¶</a></dt>
-<dd><p>liquid phase diffusivity (cm^2/s)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_room">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_room" title="Permalink to this definition">¶</a></dt>
-<dd><p>room temperature (Kelvin)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>real</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.exp_const">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.exp_const" title="Permalink to this definition">¶</a></dt>
-<dd><dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>exponential constant from following reference</p>
-</dd>
-</dl>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_salt">
-<span class="sig-name descname"><span class="pre">q_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric salt flow rate (m^3/s)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.q_he">
-<span class="sig-name descname"><span class="pre">q_he</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.q_he" title="Permalink to this definition">¶</a></dt>
-<dd><p>volumetric helium flow rate (m^3/s)
-Default: 0.005</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.length">
-<span class="sig-name descname"><span class="pre">length</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.length" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor length (m)
-Default: 10</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.dp">
-<span class="sig-name descname"><span class="pre">dp</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.dp" title="Permalink to this definition">¶</a></dt>
-<dd><p>sparger/contractor (pipe) diameter (m)
-Default: 0.1</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.db">
-<span class="sig-name descname"><span class="pre">db</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.db" title="Permalink to this definition">¶</a></dt>
-<dd><p>bubble diameter (m) for bubble generator/separator
-Default: 0.001</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.temp_salt">
-<span class="sig-name descname"><span class="pre">temp_salt</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.temp_salt" title="Permalink to this definition">¶</a></dt>
-<dd><p>salt temperature (K)
-Default: 900</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.area">
-<span class="sig-name descname"><span class="pre">area</span></span><a class="headerlink" href="#saltproc.sparger.Sparger.area" title="Permalink to this definition">¶</a></dt>
-<dd><p>contactor cross-section (m^2)</p>
-<dl class="field-list simple">
-<dt class="field-odd">Type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eps">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eps" title="Permalink to this definition">¶</a></dt>
-<dd><p>Defines gas removal efficiency for sparger (bubble generator)
-using Eq. 4 from Peebles report (ORNL-TM-2245). [2]</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.eff">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.eff" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.sherwood">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.sherwood" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations from different sources.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.description">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.description" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains a dictionary of plot properties.</p>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.calc_rem_efficiency">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.calc_rem_efficiency" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides exiting method in Parent class.</p>
-</dd></dl>
-
-<div class="admonition-references admonition">
-<p class="admonition-title">References</p>
-<p>[1] Henry’s law constants (Pa.m3/mol) for Xe, Kr, H from
-Sander, R.: Compilation of Henry’s law constants (version 4.0)
-for water as solvent, Atmos. Chem. Phys., 15, 4399–4981,
-<a class="reference external" href="https://doi.org/10.5194/acp-15-4399-2015">https://doi.org/10.5194/acp-15-4399-2015</a>, 2015.
-[2] Peebles, F. , 1968, “ Removal of Xenon-135 From Circulating
-Fuel Salt of the MSBR by Mass Transfer to Helium Bubbles,” Oak Ridge
-National Laboratory, Oak Ridge, TN, Report No. ORNL-TM-2245.
-[3] Jiaqi Chen and Caleb S. Brooks. Milestone 1.2 Report: CFD
-Sensitivity Analysis. In preparation</p>
-</div>
-<dl class="py method">
-<dt class="sig sig-object py" id="saltproc.sparger.Sparger.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">q_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">q_he</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.005</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">length</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">db</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.001</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">temp_salt</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">900</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">corr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Jiaqi'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">initial_data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.sparger.Sparger.__init__" title="Permalink to this definition">¶</a></dt>
-<dd><p>Initializes the Sparger object.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>q_salt</strong> (<em>float</em>) – volumetric salt flow rate (m^3/s)
-Default: 0.1</p></li>
-<li><p><strong>q_he</strong> (<em>float</em>) – volumetric helium flow rate (m^3/s)
-Default: 0.005</p></li>
-<li><p><strong>length</strong> (<em>float</em>) – sparger/contractor length (m)
-Default: 10</p></li>
-<li><p><strong>dp</strong> (<em>float</em>) – sparger/contractor (pipe) diameter (m)
-Default: 0.1</p></li>
-<li><p><strong>db</strong> (<em>float</em>) – bubble diameter (m) for bubble generator/separator
-Default: 0.001</p></li>
-<li><p><strong>temp_salt</strong> (<em>float</em>) – salt temperature (K)
-Default: 900</p></li>
-<li><p><strong>area</strong> (<em>float</em>) – contactor cross-section (m^2)</p></li>
-<li><p><strong>corr</strong> (<em>string</em>) – Sherwood correlations: ORNL-TM-2245 or Jaiqi’s
-(1) milestone report from Jiaqi [3]
-(2) ORNL-TM-2245 Eq.36 [2]
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p></li>
-</ul>
-</dd>
-</dl>
-<div class="admonition-notes admonition">
-<p class="admonition-title">Notes</p>
-<p>Default values comes from Jiaqi’s simulation</p>
-</div>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-name descname"><span class="pre">calc_rem_efficiency</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">el_name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.calc_rem_efficiency"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition">¶</a></dt>
-<dd><p>Overrides the existing method in Process class to provide
-efficiency values of target isotopes calculated in eff() function.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>el_name</strong> (<em>str</em>) – Name of target element to be removed.</p>
-</dd>
-<dt class="field-even">Returns</dt>
-<dd class="field-even"><p><strong>efficiency</strong> – Extraction efficiency for el_name element.</p>
-</dd>
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id1">
-<span class="sig-name descname"><span class="pre">description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition">¶</a></dt>
-<dd><p>Class attributes’ descriptions for plotting purpose in sensitivity
-analysis
-:returns: <strong>pltdict</strong> – contains instances’ information
-:rtype: dict of str to str</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id2">
-<span class="sig-name descname"><span class="pre">diffusivity</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">2.5e-09</span></em><a class="headerlink" href="#id2" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id3">
-<span class="sig-name descname"><span class="pre">eff</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eff"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiencies for target isotopes.
-In this function, vl, mu, rho, number_sh, number_sc, number_re and kl
-are average liquid velocity (m/s), kinematic viscosity (Pa.s),
-density (kg/m^3), sherwood number from slide 8 developed by Jiaqi,
-schmidt number, reynold number and liquid phase mass transfer
-coefficient (m/s), respectively.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><p><strong>rem_eff</strong> – Dictionary containing removal efficiency of each target isotope.</p>
-<dl class="simple">
-<dt><code class="docutils literal notranslate"><span class="pre">key</span></code></dt><dd><p>Name of target isotope.</p>
-</dd>
-<dt><code class="docutils literal notranslate"><span class="pre">value</span></code></dt><dd><p>removal efficiency.</p>
-</dd>
-</dl>
-</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>dict of str to float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id4">
-<span class="sig-name descname"><span class="pre">eps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">h_const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">kl_const</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.eps"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id4" title="Permalink to this definition">¶</a></dt>
-<dd><p>Evaluates gas removal efficiency using Eq. 4
-from Peebles report (ORNL-TM-2245).</p>
-<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><strong>efficiency</strong> – removal efficiency of a specific chemical element.</p>
-</dd>
-<dt class="field-even">Return type</dt>
-<dd class="field-even"><p>float</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id5">
-<span class="sig-name descname"><span class="pre">exp_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">0,</span> <span class="pre">'Kr':</span> <span class="pre">1900,</span> <span class="pre">'Xe':</span> <span class="pre">2300}</span></em><a class="headerlink" href="#id5" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id6">
-<span class="sig-name descname"><span class="pre">gas_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">8.314</span></em><a class="headerlink" href="#id6" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id7">
-<span class="sig-name descname"><span class="pre">h_const</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'H':</span> <span class="pre">2.6e-06,</span> <span class="pre">'Kr':</span> <span class="pre">2.5e-05,</span> <span class="pre">'Xe':</span> <span class="pre">4.3e-05}</span></em><a class="headerlink" href="#id7" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py method">
-<dt class="sig sig-object py" id="id8">
-<span class="sig-name descname"><span class="pre">sherwood</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/sparger.html#Sparger.sherwood"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id8" title="Permalink to this definition">¶</a></dt>
-<dd><p>Contains Sherwood number correlations.
-Sherwood correlations: ORNL-TM-2245 or Jaiqi
-(1) Jaiqi Ph.D. dissertation
-(2) ORNL-TM-2245 Eq.36
-default: Sherwood correlation from ORNL-TM-2245 Eq.36</p>
-</dd></dl>
-
-<dl class="py attribute">
-<dt class="sig sig-object py" id="id9">
-<span class="sig-name descname"><span class="pre">temp_room</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">298.15</span></em><a class="headerlink" href="#id9" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-</dd></dl>
-
-</section>
-
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-  <section id="saltproc-tests-package">
-<h1>saltproc.tests package<a class="headerlink" href="#saltproc-tests-package" title="Permalink to this heading">¶</a></h1>
-<section id="submodules">
-<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading">¶</a></h2>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_app.html">saltproc.tests.test_app module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_dot"><code class="docutils literal notranslate"><span class="pre">test_read_dot()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_feeds_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_feeds_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_main_input"><code class="docutils literal notranslate"><span class="pre">test_read_main_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_read_processes_from_input"><code class="docutils literal notranslate"><span class="pre">test_read_processes_from_input()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_refill"><code class="docutils literal notranslate"><span class="pre">test_refill()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_app.html#saltproc.tests.test_app.test_reprocessing"><code class="docutils literal notranslate"><span class="pre">test_reprocessing()</span></code></a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="saltproc.tests.test_depcode.html">saltproc.tests.test_depcode module</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_change_sim_par"><code class="docutils literal notranslate"><span class="pre">test_change_sim_par()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_convert_nuclide_name_serpent_to_zam"><code class="docutils literal notranslate"><span class="pre">test_convert_nuclide_name_serpent_to_zam()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_iter_matfile"><code class="docutils literal notranslate"><span class="pre">test_create_iter_matfile()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_create_nuclide_name_map_zam_to_serpent"><code class="docutils literal notranslate"><span class="pre">test_create_nuclide_name_map_zam_to_serpent()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_get_nuc_name"><code class="docutils literal notranslate"><span class="pre">test_get_nuc_name()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_insert_path_to_geometry"><code class="docutils literal notranslate"><span class="pre">test_insert_path_to_geometry()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_dep_comp"><code class="docutils literal notranslate"><span class="pre">test_read_dep_comp()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_info"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_info()</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="saltproc.tests.test_depcode.html#saltproc.tests.test_depcode.test_read_depcode_step_param"><code class="docutils literal notranslate"><span class="pre">test_read_depcode_step_param()</span></code></a></li>
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-<span id="saltproc-tests-test-app-module"></span><h1>saltproc.tests.test_app module<a class="headerlink" href="#module-saltproc.tests.test_app" title="Permalink to this heading">¶</a></h1>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_app.</span></span><span class="sig-name descname"><span class="pre">test_read_dot</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_app.html#test_read_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_app.test_read_dot" title="Permalink to this definition">¶</a></dt>
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-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_depcode.</span></span><span class="sig-name descname"><span class="pre">test_convert_nuclide_name_serpent_to_zam</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_depcode.html#test_convert_nuclide_name_serpent_to_zam"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_depcode.test_convert_nuclide_name_serpent_to_zam" title="Permalink to this definition">¶</a></dt>
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-  <section id="module-saltproc.tests.test_simulation">
-<span id="saltproc-tests-test-simulation-module"></span><h1>saltproc.tests.test_simulation module<a class="headerlink" href="#module-saltproc.tests.test_simulation" title="Permalink to this heading">¶</a></h1>
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_check_switch_geo_trigger">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_check_switch_geo_trigger</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_check_switch_geo_trigger"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_check_switch_geo_trigger" title="Permalink to this definition">¶</a></dt>
-<dd><p>This unit test checks that <code class="docutils literal notranslate"><span class="pre">check_switch_geo_trigger</span></code> functions
-consistently with its docstring.</p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_read_k_eds_delta">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_read_k_eds_delta</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_read_k_eds_delta"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_read_k_eds_delta" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_store_after_repr">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_store_after_repr</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_store_after_repr"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_store_after_repr" title="Permalink to this definition">¶</a></dt>
-<dd><p>This unit test checks that select entries that <a href="#id1"><span class="problematic" id="id2">``</span></a>store_after_repr_()`
-stores in the database match the corresponding entries from the input
-explicity in value and implicitly in type.</p>
-<dl class="simple">
-<dt>unchecked processes: waste_bypass</dt><dd><p>waste_core_inlet
-waste_core_outlet
-waste_heat_exchanger
-removal_tb_dy
-feed_pure_gd</p>
-</dd>
-</dl>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_store_mat_data">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_store_mat_data</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_store_mat_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_store_mat_data" title="Permalink to this definition">¶</a></dt>
-<dd><p>This unit test checks that select entries that <a href="#id3"><span class="problematic" id="id4">``</span></a>store_mat_data_()`
-stores in the database match the corresponding entries from the input
-explicity in value and implicitly in type.</p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_store_run_init_info">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_store_run_init_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_store_run_init_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_store_run_init_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>This unit test checks that the entries <a href="#id5"><span class="problematic" id="id6">``</span></a>store_run_init_info()`
-stores in the database match the corresponding entries from the input
-explicity in value and implicitly in type.</p>
-</dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="saltproc.tests.test_simulation.test_store_run_step_info">
-<span class="sig-prename descclassname"><span class="pre">saltproc.tests.test_simulation.</span></span><span class="sig-name descname"><span class="pre">test_store_run_step_info</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/saltproc/tests/test_simulation.html#test_store_run_step_info"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#saltproc.tests.test_simulation.test_store_run_step_info" title="Permalink to this definition">¶</a></dt>
-<dd><p>This unit test checks that the entries <a href="#id7"><span class="problematic" id="id8">``</span></a>store_run_step_info()`
-stores in the database match the corresponding entries from the input
-explicity in value and implicitly in type.</p>
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