diff --git a/.github/workflows/test_tsvtools.yml b/.github/workflows/test_tsvtools.yml new file mode 100644 index 000000000..bddbb80d2 --- /dev/null +++ b/.github/workflows/test_tsvtools.yml @@ -0,0 +1,48 @@ +name: TSV Tools Tests + +on: + push: + branches: ["dev"] + pull_request: + branches: ["dev"] + +permissions: + contents: read + +concurrency: + group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' + cancel-in-progress: true + +env: + POETRY_VERSION: '1.8.3' + PYTHON_VERSION: '3.11' + +jobs: + test-tsvtools: + runs-on: + - self-hosted + - Linux + - ubuntu + steps: + - uses: actions/checkout@v4 + - uses: snok/install-poetry@v1 + with: + version: ${{ env.POETRY_VERSION }} + virtualenvs-create: false + - uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + - name: Run tests for TSV tools + run: | + make env.conda + source /builds/miniconda3/etc/profile.d/conda.sh + conda activate "${{ github.workspace }}"/env + make install + cd tests + poetry run pytest --verbose \ + --junitxml=./test-reports/test_tsvtools_report.xml \ + --disable-warnings \ + --verbose \ + --basetemp=$HOME/tmp \ + --input_data_directory=/mnt/data/data_ci \ + test_tsvtools.py