From 9e493f952cb2b70c3396f9dedb263cd598960e64 Mon Sep 17 00:00:00 2001 From: Rusty Conover Date: Sat, 12 Aug 2023 20:12:24 -0400 Subject: [PATCH 1/2] Python: improve Glue catalog using Boto3 types --- python/poetry.lock | 653 +++++++++++++++--------------- python/pyiceberg/catalog/glue.py | 184 ++++----- python/pyproject.toml | 7 +- python/tests/catalog/test_glue.py | 5 +- 4 files changed, 433 insertions(+), 416 deletions(-) diff --git a/python/poetry.lock b/python/poetry.lock index d6f41784451f..15d397271297 100644 --- a/python/poetry.lock +++ b/python/poetry.lock @@ -2,13 +2,13 @@ [[package]] name = "adlfs" -version = "2023.4.0" +version = "2023.8.0" description = "Access Azure Datalake Gen1 with fsspec and dask" optional = true python-versions = ">=3.8" files = [ - {file = "adlfs-2023.4.0-py3-none-any.whl", hash = "sha256:43f91a7478a7bb8e1521f4b9369ca6685cdae5392b2b382744f58a40c6d7c877"}, - {file = "adlfs-2023.4.0.tar.gz", hash = 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"sha256:205029e1cb334c21cb4ec64fc7599be48b859a0fd381a42443cdd600bfe8b16a"}, ] [package.dependencies] pyyaml = "*" -requests = ">=2.22.0,<3.0" +requests = ">=2.30.0,<3.0" types-PyYAML = "*" -urllib3 = ">=1.25.10" +urllib3 = ">=1.25.10,<3.0" [package.extras] tests = ["coverage (>=6.0.0)", "flake8", "mypy", "pytest (>=7.0.0)", "pytest-asyncio", "pytest-cov", "pytest-httpserver", "tomli", "tomli-w", "types-requests"] @@ -2767,23 +2776,23 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] name = "virtualenv" -version = "20.24.1" +version = "20.24.3" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.24.1-py3-none-any.whl", hash = "sha256:01aacf8decd346cf9a865ae85c0cdc7f64c8caa07ff0d8b1dfc1733d10677442"}, - {file = "virtualenv-20.24.1.tar.gz", hash = "sha256:2ef6a237c31629da6442b0bcaa3999748108c7166318d1f55cc9f8d7294e97bd"}, + {file = "virtualenv-20.24.3-py3-none-any.whl", hash = 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(>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] [[package]] name = "werkzeug" @@ -3061,7 +3070,7 @@ cffi = ["cffi (>=1.11)"] adlfs = ["adlfs"] duckdb = ["duckdb", "pyarrow"] dynamodb = ["boto3"] -glue = ["boto3"] +glue = ["boto3", "mypy-boto3-glue"] hive = ["thrift"] pandas = ["pandas", "pyarrow"] pyarrow = ["pyarrow"] @@ -3074,4 +3083,4 @@ zstandard = ["zstandard"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "3bc57dab7b6f6c9e86a978bf58ca83a60e0e85a4d672880dd73b8825bd3a654f" +content-hash = "02db0227559699785263f32fb65b7ab1d4c929faeb1c0ec68795e7aa3790effb" diff --git a/python/pyiceberg/catalog/glue.py b/python/pyiceberg/catalog/glue.py index 979bfc262ee4..365228566832 100644 --- a/python/pyiceberg/catalog/glue.py +++ b/python/pyiceberg/catalog/glue.py @@ -18,14 +18,22 @@ from typing import ( Any, - Dict, List, Optional, Set, Union, + cast, ) import boto3 +from mypy_boto3_glue.client import GlueClient +from mypy_boto3_glue.type_defs import ( + DatabaseInputTypeDef, + DatabaseTypeDef, + StorageDescriptorTypeDef, + TableInputTypeDef, + TableTypeDef, +) from pyiceberg.catalog import ( EXTERNAL_TABLE, @@ -56,109 +64,94 @@ from pyiceberg.table.sorting import UNSORTED_SORT_ORDER, SortOrder from pyiceberg.typedef import EMPTY_DICT -BOTO_SESSION_CONFIG_KEYS = ["aws_access_key_id", "aws_secret_access_key", "aws_session_token", "region_name", "profile_name"] - -GLUE_CLIENT = "glue" - - -PROP_GLUE_TABLE = "Table" -PROP_GLUE_TABLE_TYPE = "TableType" -PROP_GLUE_TABLE_DESCRIPTION = "Description" -PROP_GLUE_TABLE_PARAMETERS = "Parameters" -PROP_GLUE_TABLE_DATABASE_NAME = "DatabaseName" -PROP_GLUE_TABLE_NAME = "Name" -PROP_GLUE_TABLE_OWNER = "Owner" -PROP_GLUE_TABLE_STORAGE_DESCRIPTOR = "StorageDescriptor" - -PROP_GLUE_TABLELIST = "TableList" - -PROP_GLUE_DATABASE = "Database" -PROP_GLUE_DATABASE_LIST = "DatabaseList" -PROP_GLUE_DATABASE_NAME = "Name" -PROP_GLUE_DATABASE_LOCATION = "LocationUri" -PROP_GLUE_DATABASE_DESCRIPTION = "Description" -PROP_GLUE_DATABASE_PARAMETERS = "Parameters" - -PROP_GLUE_NEXT_TOKEN = "NextToken" - -GLUE_DESCRIPTION_KEY = "comment" - def _construct_parameters(metadata_location: str) -> Properties: return {TABLE_TYPE: ICEBERG.upper(), METADATA_LOCATION: metadata_location} -def _construct_create_table_input(table_name: str, metadata_location: str, properties: Properties) -> Dict[str, Any]: - table_input = { - PROP_GLUE_TABLE_NAME: table_name, - PROP_GLUE_TABLE_TYPE: EXTERNAL_TABLE, - PROP_GLUE_TABLE_PARAMETERS: _construct_parameters(metadata_location), +def _construct_create_table_input(table_name: str, metadata_location: str, properties: Properties) -> TableInputTypeDef: + table_input: TableInputTypeDef = { + "Name": table_name, + "TableType": EXTERNAL_TABLE, + "Parameters": _construct_parameters(metadata_location), } - if table_description := properties.get(GLUE_DESCRIPTION_KEY): - table_input[PROP_GLUE_TABLE_DESCRIPTION] = table_description + if "Description" in properties: + table_input["Description"] = properties["Description"] return table_input -def _construct_rename_table_input(to_table_name: str, glue_table: Dict[str, Any]) -> Dict[str, Any]: - rename_table_input = {PROP_GLUE_TABLE_NAME: to_table_name} +def _construct_rename_table_input(to_table_name: str, glue_table: TableTypeDef) -> TableInputTypeDef: + rename_table_input: TableInputTypeDef = {"Name": to_table_name} # use the same Glue info to create the new table, pointing to the old metadata - if table_type := glue_table.get(PROP_GLUE_TABLE_TYPE): - rename_table_input[PROP_GLUE_TABLE_TYPE] = table_type - if table_parameters := glue_table.get(PROP_GLUE_TABLE_PARAMETERS): - rename_table_input[PROP_GLUE_TABLE_PARAMETERS] = table_parameters - if table_owner := glue_table.get(PROP_GLUE_TABLE_OWNER): - rename_table_input[PROP_GLUE_TABLE_OWNER] = table_owner - if table_storage_descriptor := glue_table.get(PROP_GLUE_TABLE_STORAGE_DESCRIPTOR): - rename_table_input[PROP_GLUE_TABLE_STORAGE_DESCRIPTOR] = table_storage_descriptor - if table_description := glue_table.get(PROP_GLUE_TABLE_DESCRIPTION): - rename_table_input[PROP_GLUE_TABLE_DESCRIPTION] = table_description + rename_table_input["TableType"] = glue_table["TableType"] + if "Owner" in glue_table: + rename_table_input["Owner"] = glue_table["Owner"] + + if "Parameters" in glue_table: + rename_table_input["Parameters"] = glue_table["Parameters"] + + if "StorageDescriptor" in glue_table: + # It turns out the output of StorageDescriptor is not the same as the input type + # because the Column can have a different type, but for now it seems to work, so + # silence the type error. + rename_table_input["StorageDescriptor"] = cast(StorageDescriptorTypeDef, glue_table["StorageDescriptor"]) + + if "Description" in glue_table: + rename_table_input["Description"] = glue_table["Description"] + return rename_table_input -def _construct_database_input(database_name: str, properties: Properties) -> Dict[str, Any]: - database_input: Dict[str, Any] = {PROP_GLUE_DATABASE_NAME: database_name} +def _construct_database_input(database_name: str, properties: Properties) -> DatabaseInputTypeDef: + database_input: DatabaseInputTypeDef = {"Name": database_name} parameters = {} for k, v in properties.items(): - if k == GLUE_DESCRIPTION_KEY: - database_input[PROP_GLUE_DATABASE_DESCRIPTION] = v + if k == "Description": + database_input["Description"] = v elif k == LOCATION: - database_input[PROP_GLUE_DATABASE_LOCATION] = v + database_input["LocationUri"] = v else: parameters[k] = v - database_input[PROP_GLUE_DATABASE_PARAMETERS] = parameters + database_input["Parameters"] = parameters return database_input class GlueCatalog(Catalog): - def __init__(self, name: str, **properties: str): + def __init__(self, name: str, **properties: Any): super().__init__(name, **properties) - session_config = {k: v for k, v in properties.items() if k in BOTO_SESSION_CONFIG_KEYS} - session = boto3.Session(**session_config) - self.glue = session.client(GLUE_CLIENT) + session = boto3.Session( + profile_name=properties.get("profile_name"), + region_name=properties.get("region_name"), + botocore_session=properties.get("botocore_session"), + aws_access_key_id=properties.get("aws_access_key_id"), + aws_secret_access_key=properties.get("aws_secret_access_key"), + aws_session_token=properties.get("aws_session_token"), + ) + self.glue: GlueClient = session.client("glue") + + def _convert_glue_to_iceberg(self, glue_table: TableTypeDef) -> Table: + properties: Properties = glue_table["Parameters"] - def _convert_glue_to_iceberg(self, glue_table: Dict[str, Any]) -> Table: - properties: Properties = glue_table.get(PROP_GLUE_TABLE_PARAMETERS, {}) + database_name = glue_table["DatabaseName"] + table_name = glue_table["Name"] if TABLE_TYPE not in properties: raise NoSuchPropertyException( - f"Property {TABLE_TYPE} missing, could not determine type: " - f"{glue_table[PROP_GLUE_TABLE_DATABASE_NAME]}.{glue_table[PROP_GLUE_TABLE_NAME]}" + f"Property {TABLE_TYPE} missing, could not determine type: " f"{database_name}.{table_name}" ) glue_table_type = properties[TABLE_TYPE] if glue_table_type.lower() != ICEBERG: raise NoSuchIcebergTableError( - f"Property table_type is {glue_table_type}, expected {ICEBERG}: " - f"{glue_table[PROP_GLUE_TABLE_DATABASE_NAME]}.{glue_table[PROP_GLUE_TABLE_NAME]}" + f"Property table_type is {glue_table_type}, expected {ICEBERG}: " f"{database_name}.{table_name}" ) if METADATA_LOCATION not in properties: raise NoSuchPropertyException( - f"Table property {METADATA_LOCATION} is missing, cannot find metadata for: " - f"{glue_table[PROP_GLUE_TABLE_DATABASE_NAME]}.{glue_table[PROP_GLUE_TABLE_NAME]}" + f"Table property {METADATA_LOCATION} is missing, cannot find metadata for: " f"{database_name}.{table_name}" ) metadata_location = properties[METADATA_LOCATION] @@ -166,14 +159,14 @@ def _convert_glue_to_iceberg(self, glue_table: Dict[str, Any]) -> Table: file = io.new_input(metadata_location) metadata = FromInputFile.table_metadata(file) return Table( - identifier=(self.name, glue_table[PROP_GLUE_TABLE_DATABASE_NAME], glue_table[PROP_GLUE_TABLE_NAME]), + identifier=(self.name, database_name, table_name), metadata=metadata, metadata_location=metadata_location, io=self._load_file_io(metadata.properties, metadata_location), catalog=self, ) - def _create_glue_table(self, database_name: str, table_name: str, table_input: Dict[str, Any]) -> None: + def _create_glue_table(self, database_name: str, table_name: str, table_input: TableInputTypeDef) -> None: try: self.glue.create_table(DatabaseName=database_name, TableInput=table_input) except self.glue.exceptions.AlreadyExistsException as e: @@ -260,7 +253,7 @@ def load_table(self, identifier: Union[str, Identifier]) -> Table: except self.glue.exceptions.EntityNotFoundException as e: raise NoSuchTableError(f"Table does not exist: {database_name}.{table_name}") from e - return self._convert_glue_to_iceberg(load_table_response.get(PROP_GLUE_TABLE, {})) + return self._convert_glue_to_iceberg(load_table_response["Table"]) def drop_table(self, identifier: Union[str, Identifier]) -> None: """Drop a table. @@ -303,7 +296,7 @@ def rename_table(self, from_identifier: Union[str, Identifier], to_identifier: U except self.glue.exceptions.EntityNotFoundException as e: raise NoSuchTableError(f"Table does not exist: {from_database_name}.{from_table_name}") from e - glue_table = get_table_response[PROP_GLUE_TABLE] + glue_table = get_table_response["Table"] try: # verify that from_identifier is a valid iceberg table @@ -390,18 +383,24 @@ def list_tables(self, namespace: Union[str, Identifier]) -> List[Identifier]: NoSuchNamespaceError: If a namespace with the given name does not exist, or the identifier is invalid. """ database_name = self.identifier_to_database(namespace, NoSuchNamespaceError) - table_list = [] + table_list: List[TableTypeDef] = [] + next_token: Optional[str] = None try: table_list_response = self.glue.get_tables(DatabaseName=database_name) - next_token = table_list_response.get(PROP_GLUE_NEXT_TOKEN) - table_list += table_list_response.get(PROP_GLUE_TABLELIST, []) - while next_token: - table_list_response = self.glue.get_tables(DatabaseName=database_name, NextToken=next_token) - next_token = table_list_response.get(PROP_GLUE_NEXT_TOKEN) - table_list += table_list_response.get(PROP_GLUE_TABLELIST, []) + while True: + table_list_response = ( + self.glue.get_tables(DatabaseName=database_name) + if not next_token + else self.glue.get_tables(DatabaseName=database_name, NextToken=next_token) + ) + table_list.extend(table_list_response["TableList"]) + next_token = table_list_response.get("NextToken") + if not next_token: + break + except self.glue.exceptions.EntityNotFoundException as e: raise NoSuchNamespaceError(f"Database does not exist: {database_name}") from e - return [(database_name, table.get(PROP_GLUE_TABLE_NAME)) for table in table_list] + return [(database_name, table["Name"]) for table in table_list] def list_namespaces(self, namespace: Union[str, Identifier] = ()) -> List[Identifier]: """List namespaces from the given namespace. If not given, list top-level namespaces from the catalog. @@ -413,15 +412,18 @@ def list_namespaces(self, namespace: Union[str, Identifier] = ()) -> List[Identi if namespace: return [] - database_list = [] + database_list: List[DatabaseTypeDef] = [] databases_response = self.glue.get_databases() - next_token = databases_response.get(PROP_GLUE_NEXT_TOKEN) - database_list += databases_response.get(PROP_GLUE_DATABASE_LIST, []) - while next_token: - databases_response = self.glue.get_databases(NextToken=next_token) - next_token = databases_response.get(PROP_GLUE_NEXT_TOKEN) - database_list += databases_response.get(PROP_GLUE_DATABASE_LIST, []) - return [self.identifier_to_tuple(database.get(PROP_GLUE_DATABASE_NAME)) for database in database_list] + next_token: Optional[str] = None + + while True: + databases_response = self.glue.get_databases() if not next_token else self.glue.get_databases(NextToken=next_token) + database_list.extend(databases_response["DatabaseList"]) + next_token = databases_response.get("NextToken") + if not next_token: + break + + return [self.identifier_to_tuple(database["Name"]) for database in database_list] def load_namespace_properties(self, namespace: Union[str, Identifier]) -> Properties: """Get properties for a namespace. @@ -443,13 +445,13 @@ def load_namespace_properties(self, namespace: Union[str, Identifier]) -> Proper except self.glue.exceptions.InvalidInputException as e: raise NoSuchNamespaceError(f"Invalid input for namespace {database_name}") from e - database = database_response[PROP_GLUE_DATABASE] + database = database_response["Database"] - properties = dict(database.get(PROP_GLUE_DATABASE_PARAMETERS, {})) - if database_location := database.get(PROP_GLUE_DATABASE_LOCATION): - properties[LOCATION] = database_location - if database_description := database.get(PROP_GLUE_DATABASE_DESCRIPTION): - properties[GLUE_DESCRIPTION_KEY] = database_description + properties = dict(database.get("Parameters", {})) + if "LocationUri" in database: + properties["location"] = database["LocationUri"] + if "Description" in database: + properties["Description"] = database["Description"] return properties diff --git a/python/pyproject.toml b/python/pyproject.toml index 7eea9f42711b..3c528179a606 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -60,6 +60,7 @@ ray = { version = ">=2.0.0,<3.0.0", optional = true } python-snappy = { version = ">=0.6.0,<1.0.0", optional = true } thrift = { version = ">=0.13.0,<1.0.0", optional = true } boto3 = { version = ">=1.17.106", optional = true } +mypy-boto3-glue = { version = ">=1.28.18" } s3fs = { version = ">=2021.08.0,<2024.1.0", optional = true } # Upper bound set arbitrarily, to be reassessed in early 2024. adlfs = { version = ">=2021.07.0,<2024.1.0", optional = true } # Upper bound set arbitrarily, to be reassessed in early 2024. psycopg2-binary = { version = ">=2.9.6", optional = true } @@ -95,7 +96,7 @@ ray = ["ray", "pyarrow", "pandas"] snappy = ["python-snappy"] hive = ["thrift"] s3fs = ["s3fs"] -glue = ["boto3"] +glue = ["boto3", "mypy-boto3-glue"] adlfs = ["adlfs"] dynamodb = ["boto3"] zstandard = ["zstandard"] @@ -215,6 +216,10 @@ ignore_missing_imports = true module = "botocore.*" ignore_missing_imports = true +[[tool.mypy.overrides]] +module = "mypy_boto3_glue.*" +ignore_missing_imports = true + [[tool.mypy.overrides]] module = "moto" ignore_missing_imports = true diff --git a/python/tests/catalog/test_glue.py b/python/tests/catalog/test_glue.py index 2bb90e41a5a8..1d7027a216f2 100644 --- a/python/tests/catalog/test_glue.py +++ b/python/tests/catalog/test_glue.py @@ -14,7 +14,7 @@ # KIND, either express or implied. See the License for the # specific language governing permissions and limitations # under the License. -from typing import List +from typing import Any, Dict, List from unittest import mock import pytest @@ -441,12 +441,13 @@ def test_update_namespace_properties_overlap_update_removal( @mock_glue def test_passing_profile_name() -> None: - session_properties = { + session_properties: Dict[str, Any] = { "aws_access_key_id": "abc", "aws_secret_access_key": "def", "aws_session_token": "ghi", "region_name": "eu-central-1", "profile_name": "sandbox", + "botocore_session": None, } test_properties = {"type": "glue"} test_properties.update(session_properties) From f93af8f93e2576949883b7e84ef694fe36a98b61 Mon Sep 17 00:00:00 2001 From: Rusty Conover Date: Mon, 4 Sep 2023 18:27:00 -0400 Subject: [PATCH 2/2] fix: address PR feedback --- python/pyiceberg/catalog/glue.py | 9 ++++++--- python/pyproject.toml | 2 +- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/python/pyiceberg/catalog/glue.py b/python/pyiceberg/catalog/glue.py index c3a074804761..e0683632deec 100644 --- a/python/pyiceberg/catalog/glue.py +++ b/python/pyiceberg/catalog/glue.py @@ -85,6 +85,7 @@ def _construct_create_table_input(table_name: str, metadata_location: str, prope def _construct_rename_table_input(to_table_name: str, glue_table: TableTypeDef) -> TableInputTypeDef: rename_table_input: TableInputTypeDef = {"Name": to_table_name} # use the same Glue info to create the new table, pointing to the old metadata + assert glue_table["TableType"] rename_table_input["TableType"] = glue_table["TableType"] if "Owner" in glue_table: rename_table_input["Owner"] = glue_table["Owner"] @@ -135,23 +136,25 @@ def __init__(self, name: str, **properties: Any): def _convert_glue_to_iceberg(self, glue_table: TableTypeDef) -> Table: properties: Properties = glue_table["Parameters"] + assert glue_table["DatabaseName"] + assert glue_table["Parameters"] database_name = glue_table["DatabaseName"] table_name = glue_table["Name"] if TABLE_TYPE not in properties: raise NoSuchPropertyException( - f"Property {TABLE_TYPE} missing, could not determine type: " f"{database_name}.{table_name}" + f"Property {TABLE_TYPE} missing, could not determine type: {database_name}.{table_name}" ) glue_table_type = properties[TABLE_TYPE] if glue_table_type.lower() != ICEBERG: raise NoSuchIcebergTableError( - f"Property table_type is {glue_table_type}, expected {ICEBERG}: " f"{database_name}.{table_name}" + f"Property table_type is {glue_table_type}, expected {ICEBERG}: {database_name}.{table_name}" ) if METADATA_LOCATION not in properties: raise NoSuchPropertyException( - f"Table property {METADATA_LOCATION} is missing, cannot find metadata for: " f"{database_name}.{table_name}" + f"Table property {METADATA_LOCATION} is missing, cannot find metadata for: {database_name}.{table_name}" ) metadata_location = properties[METADATA_LOCATION] diff --git a/python/pyproject.toml b/python/pyproject.toml index 6e11117023f6..ec8c5c8c92a2 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -62,7 +62,7 @@ duckdb = { version = ">=0.5.0,<1.0.0", optional = true } ray = { version = ">=2.0.0,<3.0.0", optional = true } python-snappy = { version = ">=0.6.0,<1.0.0", optional = true } thrift = { version = ">=0.13.0,<1.0.0", optional = true } -mypy-boto3-glue = { version = ">=1.28.18" } +mypy-boto3-glue = { version = ">=1.28.18", optional = true } boto3 = { version = ">=1.24.59", optional = true } s3fs = { version = ">=2023.1.0,<2024.1.0", optional = true } adlfs = { version = ">=2023.1.0,<2024.1.0", optional = true }