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Makerere training

Materials for the Starsim training workshops at Makerere School of Public Health, July 2023

Installation

You can clone, fork, or download this repository to get a local copy of all the scripts.

Setting up and running

For some of these scripts, you will need to have HPVsim and Covasim installed. Follow the instructions at each of those locations to install them. You may wish to install them within a conda environment, then use that same conda environment when running the scripts.

Once you have installed HPVsim and Covasim, you can run test_install to make sure that everything is working correctly.

Other scripts do not require HPVsim or Covasim. Check the package imports at the top of each script to see what's required.

Structure

  • the folder hpvsim_uganda contains scripts for running HPVsim for Uganda.
  • the folder ltbi contains scripts for analysing latent TB infection data.