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Release notes for OpenScPCA-analysis

This document contains release notes for versioned releases of the OpenScPCA-analysis repository. We will also periodically release and tag dated snapshots of the repository, but these will not be reflected in this document.

v0.1.0

This is the initial versioned release of the OpenScPCA-analysis repository. The repository at this stage should be generally complete with respect to infrastructure, but the analysis is still only in the early stages.

With respect to infrastructure, the repository contains the following components:

  • detailed documentation in the docs directory explaining how to interact with the OpenScPCA project and how to set up and run analyses (published at https://openscpca.readthedocs.io/)
  • a create-analysis-module.py script for setting up new analysis modules
  • download-data.py and download-results.py scripts to download data and results from the OpenScPCA project
  • template notebooks, scripts, environment files, and Docker images for analysis modules

The repository contains the following analysis modules that are now in a relatively mature state:

  • hello-R
  • hello-python
  • simulate-sce
  • doublet-detection

The following additional modules are in active development:

  • cell-type-ewings
  • metacells