Pacwave Notebook fixes & Tidal Test fixes #31
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Py 3.8, 3.9, 3.10, 3.11 | Windows Mac Linux | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| - doc_fixes | |
| jobs: | |
| set-os: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix_os: ${{ steps.set-matrix.outputs.matrix_os }} | |
| steps: | |
| - id: set-matrix | |
| run: | | |
| if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "develop" ]]; then | |
| echo "matrix_os=[ \"ubuntu-latest\"]" >> $GITHUB_OUTPUT | |
| else | |
| echo "matrix_os=[\"windows-latest\", \"ubuntu-latest\", \"macos-latest\"]" >> $GITHUB_OUTPUT | |
| fi | |
| check-changes: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| wave_io_hindcast_changed: ${{ steps.changes.outputs.wave_io_hindcast }} | |
| should-run-hindcast: ${{ steps.hindcast-logic.outputs.should-run-hindcast }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Check for changes in wave/io/hindcast | |
| id: changes | |
| uses: dorny/paths-filter@v3 | |
| with: | |
| filters: | | |
| wave_io_hindcast: | |
| - 'mhkit/wave/io/hindcast/**' | |
| - 'mhkit/tests/wave/io/hindcast/**' | |
| - id: hindcast-logic | |
| run: | | |
| if [[ "${{ github.event.pull_request.base.ref }}" == "master" || "${{ steps.changes.outputs.wave_io_hindcast }}" == "true" ]]; then | |
| echo "should-run-hindcast=true" >> "$GITHUB_OUTPUT" | |
| else | |
| echo "should-run-hindcast=false" >> "$GITHUB_OUTPUT" | |
| fi | |
| prepare-nonhindcast-cache: | |
| runs-on: ubuntu-latest | |
| env: | |
| PYTHON_VER: 3.10 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| python-version: ${{ env.PYTHON_VER }} | |
| activate-environment: TESTconda | |
| use-only-tar-bz2: true | |
| - name: Setup Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install numpy cython pip hdf5 libnetcdf cftime netcdf4 --strict-channel-priority | |
| pip install -e . --force-reinstall | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install coverage pytest coveralls . | |
| - name: Prepare non-hindcast API data | |
| shell: bash -l {0} | |
| run: | | |
| pytest mhkit/tests/river/test_io_usgs.py | |
| pytest mhkit/tests/tidal/test_io.py | |
| pytest mhkit/tests/wave/io/test_cdip.py | |
| - name: Upload data as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: data | |
| path: ~/.cache/mhkit | |
| prepare-wave-hindcast-cache: | |
| needs: [check-changes] | |
| runs-on: ubuntu-latest | |
| env: | |
| PYTHON_VER: 3.9 | |
| if: (needs.check-changes.outputs.should-run-hindcast == 'true') | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| activate-environment: TEST | |
| python-version: ${{ env.PYTHON_VER }} | |
| use-only-tar-bz2: true | |
| - name: Setup Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority | |
| pip install -e . --force-reinstall | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install coverage pytest coveralls . | |
| - name: Prepare Wave Hindcast data | |
| shell: bash -l {0} | |
| run: | | |
| pytest mhkit/tests/wave/io/hindcast/test_hindcast.py | |
| - name: Upload Wave Hindcast data as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wave-hindcast-data | |
| path: ~/.cache/mhkit | |
| prepare-wind-hindcast-cache: | |
| needs: [check-changes, prepare-wave-hindcast-cache] | |
| runs-on: ubuntu-latest | |
| env: | |
| PYTHON_VER: 3.9 | |
| if: (needs.check-changes.outputs.should-run-hindcast == 'true') | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| activate-environment: TEST | |
| python-version: ${{ env.PYTHON_VER }} | |
| use-only-tar-bz2: true | |
| - name: Setup Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install numpy cython pip pytest hdf5 libnetcdf cftime netcdf4 coverage --strict-channel-priority | |
| pip install -e . --no-deps --force-reinstall | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install coverage pytest coveralls . | |
| - name: Prepare Wind Hindcast data | |
| shell: bash -l {0} | |
| run: | | |
| pytest mhkit/tests/wave/io/hindcast/test_wind_toolkit.py | |
| - name: Upload Wind Hindcast data as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wind-hindcast-data | |
| path: ~/.cache/mhkit | |
| conda-build: | |
| name: conda-${{ matrix.os }}/${{ matrix.python-version }} | |
| needs: [set-os, prepare-nonhindcast-cache] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ${{fromJson(needs.set-os.outputs.matrix_os)}} | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| env: | |
| PYTHON_VER: ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| environment-file: environment.yml | |
| activate-environment: TEST | |
| python-version: ${{ matrix.python-version }} | |
| use-only-tar-bz2: false | |
| - name: Create and setup Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge pytest coverage=7.5.0 coveralls --strict-channel-priority | |
| pip install -e . --force-reinstall | |
| - name: Download data from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: data | |
| path: ~/.cache/mhkit | |
| - name: Run pytest & generate coverage report | |
| shell: bash -l {0} | |
| run: | | |
| coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini | |
| coverage lcov | |
| - name: Upload coverage data to coveralls.io | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| flag-name: conda-${{ runner.os }}-py${{ matrix.python-version }} | |
| parallel: true | |
| path-to-lcov: ./coverage.lcov | |
| pip-build: | |
| name: pip-${{ matrix.os }}/${{ matrix.python-version }} | |
| needs: [set-os, prepare-nonhindcast-cache] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ${{fromJson(needs.set-os.outputs.matrix_os)}} | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install HDF5 (macOS with Python 3.8) | |
| if: startsWith(runner.os, 'macOS') && matrix.python-version == '3.8' | |
| run: brew install hdf5 | |
| - name: Install NetCDF (macOS with Python 3.8) | |
| if: startsWith(runner.os, 'macOS') && matrix.python-version == '3.8' | |
| run: brew install netcdf | |
| - name: Set environment variables (macOS with Python 3.8) | |
| if: startsWith(runner.os, 'macOS') && matrix.python-version == '3.8' | |
| run: | | |
| echo "HDF5_DIR=$(brew --prefix hdf5)" >> $GITHUB_ENV | |
| echo "NETCDF4_DIR=$(brew --prefix netcdf)" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$(brew --prefix hdf5)/lib/pkgconfig:$(brew --prefix netcdf)/lib/pkgconfig:$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| - name: Set up Git repository | |
| uses: actions/checkout@v4 | |
| - name: Download data from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: data | |
| path: ~/.cache/mhkit | |
| - name: Update and install packages | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install coverage pytest coveralls . | |
| - name: Run pytest & generate coverage report | |
| shell: bash -l {0} | |
| run: | | |
| coverage run --rcfile=.github/workflows/.coveragerc --source=./mhkit/ -m pytest -c .github/workflows/pytest.ini | |
| coverage lcov | |
| - name: Upload coverage data to coveralls.io | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| flag-name: pip-${{ runner.os }}-py${{ matrix.python-version }} | |
| parallel: true | |
| path-to-lcov: ./coverage.lcov | |
| hindcast-calls: | |
| name: hindcast-${{ matrix.os }}/${{ matrix.python-version }} | |
| needs: | |
| [ | |
| check-changes, | |
| prepare-wave-hindcast-cache, | |
| prepare-wind-hindcast-cache, | |
| set-os, | |
| ] | |
| if: (needs.check-changes.outputs.should-run-hindcast == 'true') | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 1 | |
| fail-fast: false | |
| matrix: | |
| os: ${{fromJson(needs.set-os.outputs.matrix_os)}} | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| environment-file: environment.yml | |
| activate-environment: TEST | |
| python-version: ${{ matrix.python-version }} | |
| use-only-tar-bz2: false | |
| - name: Setup Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge pytest coverage=7.5.0 coveralls --strict-channel-priority | |
| pip install -e . --force-reinstall | |
| - name: Download Wave Hindcast data from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: wave-hindcast-data | |
| path: ~/.cache/mhkit/wave-hindcast | |
| - name: Download Wind Hindcast data from artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: wind-hindcast-data | |
| path: ~/.cache/mhkit/wind-hindcast | |
| - name: Consolidate hindcast data | |
| run: | | |
| mkdir -p ~/.cache/mhkit/hindcast | |
| mv ~/.cache/mhkit/wave-hindcast/hindcast/* ~/.cache/mhkit/hindcast/ | |
| mv ~/.cache/mhkit/wind-hindcast/hindcast/* ~/.cache/mhkit/hindcast/ | |
| shell: bash | |
| - name: Install MHKiT and run pytest | |
| shell: bash -l {0} | |
| run: | | |
| coverage run --rcfile=.github/workflows/.coveragehindcastrc -m pytest -c .github/workflows/pytest-hindcast.ini | |
| coverage lcov | |
| - name: Upload coverage data to coveralls.io | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| flag-name: hindcast-${{ runner.os }}-py${{ matrix.python-version }} | |
| parallel: true | |
| path-to-lcov: ./coverage.lcov | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: | |
| [ | |
| prepare-wave-hindcast-cache, | |
| prepare-wind-hindcast-cache, | |
| conda-build, | |
| pip-build, | |
| hindcast-calls, | |
| ] | |
| if: | | |
| always() && | |
| ( | |
| ( | |
| needs.conda-build.result == 'success' && | |
| needs.pip-build.result == 'success' && | |
| needs.prepare-wave-hindcast-cache.result == 'skipped' && | |
| needs.prepare-wind-hindcast-cache.result == 'skipped' && | |
| needs.hindcast-calls.result == 'skipped' | |
| ) || | |
| ( | |
| needs.conda-build.result == 'success' && | |
| needs.pip-build.result == 'success' && | |
| needs.prepare-wave-hindcast-cache.result == 'success' && | |
| needs.prepare-wind-hindcast-cache.result == 'success' && | |
| needs.hindcast-calls.result == 'success' | |
| ) | |
| ) | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@master | |
| with: | |
| parallel-finished: true | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |